D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

mir-133 microRNA precursor family   (Rfam: RF00446)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
((G)UC)C
((C)CU)U
(UN()RN)
((U)U)U
((U)C)A
100.0
93.5
97.8
100.0
93.5
(UN()RN)

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 98.6 %
(± 0.213 %)
Decision tree:

5-fold cross-validation: 87.8 %
(± 5.15 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 90.7 %
(± 5.21 %)
of AAQQ01431588.1/1752-1838
AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
(((((..((((((((((((((.(..((..(((.((((((((..)))))))).)))..))..).))))))))))))))..)))))...
.........1.........2.........3.........4.........5.........6.........7.........8.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567

abstract shape: ()

Number of sequences
Structure ORBs (out of 46) (%)
1 ((G)UC)C
 42 91.3
>AL449263.6/10756-10670
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGACUGUCCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUGAU
..........................(..(........................)..).............................
>AASW01052175.1/117-202
AACGCUGUGUGUAGCUGGUUGACAUCGGGUCAGAUCUGUUUUUUAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCCAGUGGUUGCU
............................((.......................)..).............................
>AL672157.5/51527-51613
AAUGCUUUGCUGAAGCUGGUAAAAUGGAACCAAAUCAGCUGUUGGAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAU
..........................(..(........................)..).............................
>AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
..........................(..(........................)..).............................
>AAPT01020977.1/40328-40419
UUUACAACGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUUUAUUCGAGUAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
.................................((........................)..).............................
>AAYZ01364872.1/887-973
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCGACUCUGCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
..........................(..(........................)..).............................
>AC105947.11/187380-187294
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAU
..........................(..(........................)..).............................
>AL929326.9/103254-103340
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCACCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCUUUGAU
..........................(..(........................)..).............................
>AAVX01020289.1/2798-2712
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCAACUAUUCUAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAU
..........................(..(........................)..).............................
>CAAE01015003.1/756593-756507
CACGCCUUGCUGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCUGUGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGGCACA
..........................(..(..........................)..)...........................
>AAFR03005395.1/22086-22172
AAUGCUUUGCUAAAGCUGGUAAAAAGGAACCAAAUCACCUGUGCGAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUAAU
..........................(..(........................)..).............................
>AAPN01261137.1/7422-7509
UGAACCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUGCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCGGGGCCGACAU
..........................(..(.........................)..).............................
>AACT01005834.1/3375-3295
CUUGUGACGGUUGUUGGUAAAGAGGAUCGAACCUGAAAAAUGAUGGUUUGGUCCCCUUCAACCAGCUACCGAUGCAACGCA
........................(.(.......................)..)...........................
>AANI01016239.1/47521-47435
AACGCUGUGUGUAGUUGGUUGACAUCGGGUCAGAUCUAUUUCUGAAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAAG
............................((........................)..).............................
>AAIY01559715.1/853-939
GAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAGAUCGGCCGUAUGAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAG
..........................(..(........................)..).............................
>CAAE01007044.1/175-261
AAUGCUUUGCUGCAGCUGGUCAAAUGGAACCAGAUCUCCUUCUGUCUGGAUUUGGUCCCCUUCAACCAGUUGCAGCAUUGACGUCCU
..........................(..(........................)..).............................
>AAVX01266048.1/613-699
GAUGUUUUGCUGAAGCUGGUAAAAGAGAACCAGAUCGAUUGUUACACGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUCAU
..........................(..(........................)..).............................
>AL391221.15/84070-84157
UGCCCCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUUCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGGCAA
..........................(..(.........................)..).............................
>AAZO01007144.1/88847-88936
AAUGCUCUUCUUUAGCUGGUUGACGCCGGGCCAAGUUUAGCCGAUUCGAGUCAUUUGGUCCCCUUCAACCAGCUGUAGUUGGCAUUUAGA
.............................((..........................)..).............................
>AY865868.1/428-514
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAU
..........................(..(........................)..).............................
>AAQB01006401.1/332784-332872
CAACACUGAAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUUUAUUUGAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUC
.............................((.........................)..).............................
>AAEU02000272.1/43410-43324
AACGCUGUGUGUAGCUGGUUGACAUCGGGUCAGAUCUGUUUUUCCAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCCAGUGGUUGAU
............................((........................)..).............................
>BX276101.6/114604-114519
ACGCCUUGCUGUGGCUGGUCAAAUGGAACCAAGUCAGGUGUUUCUGCGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGUGAAU
.........................(..(..........................)..)...........................
>AAPU01010689.1/170290-170375
AACGCUGUGUGUAGUUGGUUGACAUCGGGUCAGAUCUGUUUUUCGAGAAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
............................((.......................)..).............................
>AADN03008235.1/118737-118822
GGUGCCUUCCUGGGGCUGGUAAAAAGGAACCAGAUCAACUACAACUGGAUUUGGUCCCCUUCAACCAGCUGCAGUGGGGCACGAGG
..........................(..(.......................)..).............................
>BAAF04047944.1/3038-2950
CUCGCCUUGCUGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCAGAGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGUGAAUCA
..........................(..(..........................)..).............................
>AY865873.1/326-412
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAC
..........................(..(........................)..).............................
>CAAK05040482.1/11317-11401
CACGGCUUAGUUGCUGGUAAAACGGAACCAAGUCGGGUGUUUGCGAGAGGUUUGGUCCCUUUCAACCAGCUACUGCGCCGUGAAU
........................(..(..........................)..)...........................
>AANH01006842.1/37352-37440
CACGCCUUGCCGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCUGUGAGGUUUGGUCCCCUUCAACCAGCUACUGCGCCGUGAAUUC
..........................(..(..........................)..).............................
>AAWZ02009612.1/61633-61719
GAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCACCUGUUAAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGUAUUGAU
..........................(..(........................)..).............................
>FJ469647.1/6244-6331
GGCCCCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUUCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGGCAA
..........................(..(.........................)..).............................
>AADN03003607.1/197879-197966
UAUGCUCUGCUCUGGCUGGUCAAACGGAACCAAGCCCGUCUUCUUCGGAGGUUUGGUCCCCUUCAACCAGCUAUAGCAGUGUUGAAAA
..........................(..(.........................)..).............................
>AAPP01015693.1/86515-86606
UCUGCAACGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUCUUUUCAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
.................................((........................)..).............................
>AAWZ02024324.1/1942-2028
UAUGUGUCCCUAGGGCUGGUAAAAAGGAACCAGAUCGACUGGCAACUGGAUUUGGUCCCCUUCAACCAGCUGUGGUGGCACGUGAAA
..........................(..(........................)..).............................
>AAGJ04155436.1/18887-18799
AAUGUAGCGCUUUAGCUGGUAAACGGGAACCAAAUCGUGAAGUAAAUGCGGAUUUGGUCCCCUUCAACCAGCCGUAGCACUGCAUUCUA
..........................(..(..........................)..).............................
>AAPN01136163.1/2110-2024
GGCCAGCUGCUGGGGCUGGUCAAAAGGAACCAGAUCGCCUCUCCACCUGAUUUGGUCCCCUUCAACCGGCUGCAGCGGGUUGCCGGC
..........................(..(........................)..).............................
>AAFR03002451.1/32623-32536
UGCACCUUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUGACUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGACAU
..........................(..(.........................)..).............................
>AAIZ01001189.1/55294-55207
AACGGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUUUUAUCAAGUAUUUGGUCCCCUUCAACCAGCUGUAUCAGUGGUUGAUU
.............................((........................)..).............................
>AAWZ02017015.1/25332-25245
UGAGUCCUGCUCUGGCUGGUCAAAGGGAACCACGGCUGUCUUCCUUGAAGGUUUGGUCCCCUUUAACCAGCUACAGCAGUCCUGAUAU
..........................(..(.........................)..).............................
>AADK01000091.1/43441-43353
CGUUGUUCGCUUUAGCUGGUUGACUUCGGGUCAAAUUGUCAUUUUCAUAUCAUUUGGUCCCCUUCAACCAGCUGUAGUUAACAUCUGCU
.............................(.(........................)..).............................
>AY865870.1/382-467
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAU
..........................(..(.......................)..).............................
>AC147912.2/162581-162667
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCACCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGGAUUGCAUUGAG
..........................(..(........................)..).............................
2 ((G)UC)C
((C)CU)U
 38 82.6
>AAFR03005395.1/22086-22172
AAUGCUUUGCUAAAGCUGGUAAAAAGGAACCAAAUCACCUGUGCGAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUAAU
......................(..((..(........................)..))..).........................
>AC105947.11/187380-187294
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAU
......................(..((..(........................)..))..).........................
>AAPN01261137.1/7422-7509
UGAACCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUGCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCGGGGCCGACAU
......................(..((..(.........................)..))..).........................
>AL929326.9/103254-103340
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCACCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCUUUGAU
......................(..((..(........................)..))..).........................
>AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
......................(..((..(........................)..))..).........................
>AL449263.6/10756-10670
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGACUGUCCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUGAU
......................(..((..(........................)..))..).........................
>AANH01006842.1/37352-37440
CACGCCUUGCCGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCUGUGAGGUUUGGUCCCCUUCAACCAGCUACUGCGCCGUGAAUUC
......................(..((..(..........................)..))..).........................
>FJ469647.1/6244-6331
GGCCCCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUUCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGGCAA
......................(..((..(.........................)..))..).........................
>AAPT01020977.1/40328-40419
UUUACAACGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUUUAUUCGAGUAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
..........................(....(.((........................)..))..).........................
>AANI01016239.1/47521-47435
AACGCUGUGUGUAGUUGGUUGACAUCGGGUCAGAUCUAUUUCUGAAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAAG
.....................(....(.((........................)..))..).........................
>AAVX01020289.1/2798-2712
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCAACUAUUCUAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAU
......................(..((..(........................)..))..).........................
>AAPU01010689.1/170290-170375
AACGCUGUGUGUAGUUGGUUGACAUCGGGUCAGAUCUGUUUUUCGAGAAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
.....................(....(.((.......................)..))..).........................
>AASW01052175.1/117-202
AACGCUGUGUGUAGCUGGUUGACAUCGGGUCAGAUCUGUUUUUUAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCCAGUGGUUGCU
.....................(....(.((.......................)..))..).........................
>AAPN01136163.1/2110-2024
GGCCAGCUGCUGGGGCUGGUCAAAAGGAACCAGAUCGCCUCUCCACCUGAUUUGGUCCCCUUCAACCGGCUGCAGCGGGUUGCCGGC
......................(..((..(........................)..))..).........................
>AADN03003607.1/197879-197966
UAUGCUCUGCUCUGGCUGGUCAAACGGAACCAAGCCCGUCUUCUUCGGAGGUUUGGUCCCCUUCAACCAGCUAUAGCAGUGUUGAAAA
......................(..((..(.........................)..))..).........................
>AAWZ02024324.1/1942-2028
UAUGUGUCCCUAGGGCUGGUAAAAAGGAACCAGAUCGACUGGCAACUGGAUUUGGUCCCCUUCAACCAGCUGUGGUGGCACGUGAAA
......................(..((..(........................)..))..).........................
>AACT01005834.1/3375-3295
CUUGUGACGGUUGUUGGUAAAGAGGAUCGAACCUGAAAAAUGAUGGUUUGGUCCCCUUCAACCAGCUACCGAUGCAACGCA
....................(.(.(.(.......................)..))..).......................
>AAYZ01364872.1/887-973
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCGACUCUGCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
......................(..((..(........................)..))..).........................
>AADN03008235.1/118737-118822
GGUGCCUUCCUGGGGCUGGUAAAAAGGAACCAGAUCAACUACAACUGGAUUUGGUCCCCUUCAACCAGCUGCAGUGGGGCACGAGG
......................(..((..(.......................)..))..).........................
>AAFR03002451.1/32623-32536
UGCACCUUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUGACUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGACAU
......................(..((..(.........................)..))..).........................
>AC147912.2/162581-162667
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCACCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGGAUUGCAUUGAG
......................(..((..(........................)..))..).........................
>AAZO01007144.1/88847-88936
AAUGCUCUUCUUUAGCUGGUUGACGCCGGGCCAAGUUUAGCCGAUUCGAGUCAUUUGGUCCCCUUCAACCAGCUGUAGUUGGCAUUUAGA
......................(....(.((..........................)..))..).........................
>CAAE01007044.1/175-261
AAUGCUUUGCUGCAGCUGGUCAAAUGGAACCAGAUCUCCUUCUGUCUGGAUUUGGUCCCCUUCAACCAGUUGCAGCAUUGACGUCCU
......................(..((..(........................)..))..).........................
>AL672157.5/51527-51613
AAUGCUUUGCUGAAGCUGGUAAAAUGGAACCAAAUCAGCUGUUGGAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAU
......................(..((..(........................)..))..).........................
>AL391221.15/84070-84157
UGCCCCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUUCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGGCAA
......................(..((..(.........................)..))..).........................
>AAIY01559715.1/853-939
GAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAGAUCGGCCGUAUGAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAG
......................(..((..(........................)..))..).........................
>BAAF04047944.1/3038-2950
CUCGCCUUGCUGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCAGAGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGUGAAUCA
......................(..((..(..........................)..))..).........................
>AY865868.1/428-514
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAU
......................(..((..(........................)..))..).........................
>AAPP01015693.1/86515-86606
UCUGCAACGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUCUUUUCAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
..........................(....(.((........................)..))..).........................
>AAIZ01001189.1/55294-55207
AACGGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUUUUAUCAAGUAUUUGGUCCCCUUCAACCAGCUGUAUCAGUGGUUGAUU
......................(....(.((........................)..))..).........................
>BX276101.6/114604-114519
ACGCCUUGCUGUGGCUGGUCAAAUGGAACCAAGUCAGGUGUUUCUGCGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGUGAAU
.....................(..((..(..........................)..))..).......................
>AAEU02000272.1/43410-43324
AACGCUGUGUGUAGCUGGUUGACAUCGGGUCAGAUCUGUUUUUCCAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCCAGUGGUUGAU
.....................(....(.((........................)..))..).........................
>AAQB01006401.1/332784-332872
CAACACUGAAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUUUAUUUGAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUC
......................(....(.((.........................)..))..).........................
>AY865870.1/382-467
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAU
......................(..((..(.......................)..))..).........................
>AADK01000091.1/43441-43353
CGUUGUUCGCUUUAGCUGGUUGACUUCGGGUCAAAUUGUCAUUUUCAUAUCAUUUGGUCCCCUUCAACCAGCUGUAGUUAACAUCUGCU
......................(.....((.(........................)..))..).........................
>AAGJ04155436.1/18887-18799
AAUGUAGCGCUUUAGCUGGUAAACGGGAACCAAAUCGUGAAGUAAAUGCGGAUUUGGUCCCCUUCAACCAGCCGUAGCACUGCAUUCUA
......................(..((..(..........................)..))..).........................
>AY865873.1/326-412
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAC
......................(..((..(........................)..))..).........................
>AAWZ02009612.1/61633-61719
GAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCACCUGUUAAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGUAUUGAU
......................(..((..(........................)..))..).........................
3 ((G)UC)C
((C)CU)U
(UN()RN)
 28 60.9
>AL449263.6/10756-10670
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGACUGUCCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUGAU
....(..(..............(..((..(........................)..))..)..............)..).......
>AY865868.1/428-514
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAU
....(..(..............(..((..(........................)..))..)..............)..).......
>AAPT01020977.1/40328-40419
UUUACAACGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUUUAUUCGAGUAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
.(..(.....................(....(.((........................)..))..).....................)..)
>AC105947.11/187380-187294
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAU
....(..(..............(..((..(........................)..))..)..............)..).......
>AADN03008235.1/118737-118822
GGUGCCUUCCUGGGGCUGGUAAAAAGGAACCAGAUCAACUACAACUGGAUUUGGUCCCCUUCAACCAGCUGCAGUGGGGCACGAGG
.....(..(.............(..((..(.......................)..))..).............)..)........
>AAVX01020289.1/2798-2712
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCAACUAUUCUAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAU
....(..(..............(..((..(........................)..))..)..............)..).......
>BX276101.6/114604-114519
ACGCCUUGCUGUGGCUGGUCAAAUGGAACCAAGUCAGGUGUUUCUGCGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGUGAAU
....(..(.............(..((..(..........................)..))..).............)..)......
>AAPP01015693.1/86515-86606
UCUGCAACGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUCUUUUCAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
.(..(.....................(....(.((........................)..))..).....................)..)
>AAEU02000272.1/43410-43324
AACGCUGUGUGUAGCUGGUUGACAUCGGGUCAGAUCUGUUUUUCCAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCCAGUGGUUGAU
......(..(...........(....(.((........................)..))..)...........)..)..........
>AY865870.1/382-467
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAU
....(..(..............(..((..(.......................)..))..)..............)..).......
>AAFR03005395.1/22086-22172
AAUGCUUUGCUAAAGCUGGUAAAAAGGAACCAAAUCACCUGUGCGAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUAAU
....(..(..............(..((..(........................)..))..)..............)..).......
>AAGJ04155436.1/18887-18799
AAUGUAGCGCUUUAGCUGGUAAACGGGAACCAAAUCGUGAAGUAAAUGCGGAUUUGGUCCCCUUCAACCAGCCGUAGCACUGCAUUCUA
..........(..(........(..((..(..........................)..))..)........)..).............
>AAFR03002451.1/32623-32536
UGCACCUUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUGACUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGACAU
.....(..(.............(..((..(.........................)..))..).............)..)........
>AAYZ01364872.1/887-973
AAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCGACUCUGCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
....(..(..............(..((..(........................)..))..)..............)..).......
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>BAAF04047944.1/3038-2950
CUCGCCUUGCUGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCAGAGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGUGAAUCA
..........................(..(..........................)..).............................
......................(..((..(..........................)..))..).........................
.....(..(.............(..((..(..........................)..))..).............)..)........
.....(..(.............(..((..(.(....(...............).).)..))..).............)..)........
>AADK01000091.1/43441-43353
CGUUGUUCGCUUUAGCUGGUUGACUUCGGGUCAAAUUGUCAUUUUCAUAUCAUUUGGUCCCCUUCAACCAGCUGUAGUUAACAUCUGCU
.............................(.(........................)..).............................
......................(.....((.(........................)..))..).........................
.(..(.................(.....((.(........................)..))..).................)..)....
.(..(.................(.....((.(.(.(................).).)..))..).................)..)....
>AAPT01020977.1/40328-40419
UUUACAACGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUUUAUUCGAGUAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
.................................((........................)..).............................
..........................(....(.((........................)..))..).........................
.(..(.....................(....(.((........................)..))..).....................)..)
>AAZO01007144.1/88847-88936
AAUGCUCUUCUUUAGCUGGUUGACGCCGGGCCAAGUUUAGCCGAUUCGAGUCAUUUGGUCCCCUUCAACCAGCUGUAGUUGGCAUUUAGA
.............................((..........................)..).............................
......................(....(.((..........................)..))..).........................
..........(..(........(....(.((..........................)..))..)........)..).............
>BX276101.6/114604-114519
ACGCCUUGCUGUGGCUGGUCAAAUGGAACCAAGUCAGGUGUUUCUGCGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGUGAAU
.........................(..(..........................)..)...........................
.....................(..((..(..........................)..))..).......................
....(..(.............(..((..(..........................)..))..).............)..)......
>AANH01006842.1/37352-37440
CACGCCUUGCCGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCUGUGAGGUUUGGUCCCCUUCAACCAGCUACUGCGCCGUGAAUUC
..........................(..(..........................)..).............................
......................(..((..(..........................)..))..).........................
.....(..(.............(..((..(..........................)..))..).............)..)........
>AAPP01015693.1/86515-86606
UCUGCAACGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUCUUUUCAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
.................................((........................)..).............................
..........................(....(.((........................)..))..).........................
.(..(.....................(....(.((........................)..))..).....................)..)
>AAGJ04155436.1/18887-18799
AAUGUAGCGCUUUAGCUGGUAAACGGGAACCAAAUCGUGAAGUAAAUGCGGAUUUGGUCCCCUUCAACCAGCCGUAGCACUGCAUUCUA
..........................(..(..........................)..).............................
......................(..((..(..........................)..))..).........................
..........(..(........(..((..(..........................)..))..)........)..).............
>AY865870.1/382-467
AAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAU
..........................(..(.......................)..).............................
......................(..((..(.......................)..))..).........................
....(..(..............(..((..(.......................)..))..)..............)..).......
>AAPN01261137.1/7422-7509
UGAACCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUGCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCGGGGCCGACAU
..........................(..(.........................)..).............................
......................(..((..(.........................)..))..).........................
>AACT01005834.1/3375-3295
CUUGUGACGGUUGUUGGUAAAGAGGAUCGAACCUGAAAAAUGAUGGUUUGGUCCCCUUCAACCAGCUACCGAUGCAACGCA
........................(.(.......................)..)...........................
....................(.(.(.(.......................)..))..).......................
>AANI01016239.1/47521-47435
AACGCUGUGUGUAGUUGGUUGACAUCGGGUCAGAUCUAUUUCUGAAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAAG
............................((........................)..).............................
.....................(....(.((........................)..))..).........................
>AL391221.15/84070-84157
UGCCCCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUUCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGGCAA
..........................(..(.........................)..).............................
......................(..((..(.........................)..))..).........................
>AAQB01006401.1/332784-332872
CAACACUGAAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUUUAUUUGAAGCAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUC
.............................((.........................)..).............................
......................(....(.((.........................)..))..).........................
>AAPU01010689.1/170290-170375
AACGCUGUGUGUAGUUGGUUGACAUCGGGUCAGAUCUGUUUUUCGAGAAUUUGGUCCCCUUCAACCAGCUGUAGCAGUGGUUGAUG
............................((.......................)..).............................
.....................(....(.((.......................)..))..).........................
>FJ469647.1/6244-6331
GGCCCCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUUCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGGCAA
..........................(..(.........................)..).............................
......................(..((..(.........................)..))..).........................
>AADN03003607.1/197879-197966
UAUGCUCUGCUCUGGCUGGUCAAACGGAACCAAGCCCGUCUUCUUCGGAGGUUUGGUCCCCUUCAACCAGCUAUAGCAGUGUUGAAAA
..........................(..(.........................)..).............................
......................(..((..(.........................)..))..).........................
>AAPN01136163.1/2110-2024
GGCCAGCUGCUGGGGCUGGUCAAAAGGAACCAGAUCGCCUCUCCACCUGAUUUGGUCCCCUUCAACCGGCUGCAGCGGGUUGCCGGC
..........................(..(........................)..).............................
......................(..((..(........................)..))..).........................
>AAIZ01001189.1/55294-55207
AACGGCUGUAUGUAGCUGGUUGACAUCGGGUCAGAUCUAUUUUAUCAAGUAUUUGGUCCCCUUCAACCAGCUGUAUCAGUGGUUGAUU
.............................((........................)..).............................
......................(....(.((........................)..))..).........................
>CAAE01015003.1/756593-756507
CACGCCUUGCUGUGGCUGGUCAAACGGAACCAAGUCAGGUGUUUCUGUGAGGUUUGGUCCCCUUCAACCAGCUACUGCGUCGGCACA
..........................(..(..........................)..)...........................
>AAVX01266048.1/613-699
GAUGUUUUGCUGAAGCUGGUAAAAGAGAACCAGAUCGAUUGUUACACGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUCAU
..........................(..(........................)..).............................
>CAAK05040482.1/11317-11401
CACGGCUUAGUUGCUGGUAAAACGGAACCAAGUCGGGUGUUUGCGAGAGGUUUGGUCCCUUUCAACCAGCUACUGCGCCGUGAAU
........................(..(..........................)..)...........................
>AAWZ02017015.1/25332-25245
UGAGUCCUGCUCUGGCUGGUCAAAGGGAACCACGGCUGUCUUCCUUGAAGGUUUGGUCCCCUUUAACCAGCUACAGCAGUCCUGAUAU
..........................(..(.........................)..).............................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 ((G)UC)C < 0.001 4.5
AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.......
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2 ((C)CU)U < 0.001 11.5
AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.......
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3 (UN()RN) < 0.001 4.14
AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.......
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4 ((U)U)U < 0.001 1.59
AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.......
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5 ((U)C)A < 0.001 4.6
AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 ((G)UC)C < 0.001 4.5
AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.......
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2 ((U)YR)A < 0.001 14.8
AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.......
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3 ((Y)C)C < 0.001 5.68
AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.......
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4 ((U)C)A < 0.001 4.6
AAQQ01431588.1/1752-1838
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
AAUGCUUUGCUGAAGCUGGUCAAAUGGAACCAAAUCGGCUGCUCACUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGCGCAUUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).