D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

sul1 RNA (Rfam: RF03058)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

(CYNAY)
((U)GG)C
(C()C)
(N()NRN)
((N)NN)C
N(GNN)A

97.8
97.8
100.0
100.0
100.0
82.2

(CYNAY)
((U)GG)C
(C()C)
(N()NRN)

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 99.8 %
(± 0.0894 %)

Decision tree:

5-fold cross-validation: 92.7 %
(± 4.73 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 95.3 %
(± 4.62 %)

of URS0000D67D60_279238/1-56

URS0000D67D60_279238/1-56

CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA
....((((((((...)..))))))..)(.(((((((.(.....).)))))))...)
.........1.........2.........3.........4.........5......
12345678901234567890123456789012345678901234567890123456

abstract shape: `()()`

					Number of sequences
	Structure	ORBs			(out of 45)	(%)
1		(CYNAY)			44	97.8
>URS0000D67E30_641118/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCUGGCCGCCUAUCCGCCAGACAACG .....................................(.....)............ >URS0000D697B5_311403/1-56 CACGGACCCGGUGAAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGAUAACG .....................................(.....)............ >URS0000D68F94_12908/1-62 CUUGGACUCGGCGCCCCUGGGCUGCCGGGUGGCUAUCCCGUCCGCCGAUCCGUCGGGAAACU ...........................................(.....)............ >URS0000D672AF_266834/1-56 CCUGGACCCGGUGUAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG .....................................(.....)............ >URS0000D66603_314264/1-59 CAUGGACCCCGGGUGCAAGCCCCGGGUGGCUCUUCCGGCCGCCUAUCCGCCGGAUCAUU ........................................(.....)............ >URS0000D699E6_311402/1-56 CACGGACCCGGUGAAAUUCCGGGUGGCUAUUCUGGCCGCCAAUCCGCCAGACAACG .....................................(.....)............ >URS0000D6610A_395492/1-56 CACGGACCCGGUGAGACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG .....................................(.....)............ >URS0000D6B3BE_272630/1-56 CUCGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG .....................................(.....)............ >URS0000D68922_12908/1-64 CUUGGACCCGGCCCUGUUCGCAGGCGACGGGUGGCUAUCCCCGCCGCCGAUCCGCUGGGAAACU .............................................(.....)............ >URS0000D6D026_272943/1-58 UCAGGACCCGGGUGCGAUCCCCGGGUGGCUCCUCCGGCCGCCGAUCCGCCGGACAACC .......................................(.....)............ >URS0000D69BEC_318586/1-58 CAUGGAGCCGGGUGCAACUCCCGGCUGGCUGUUCCGGCCGCCGAUCCGCCGGACAACC .......................................(.....)............ >URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .....................................(.....)............ >URS0000D6D0CE_314266/1-56 CAUGGACCCGGUGCAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .....................................(.....)............ >URS0000D6C9FE_12908/1-56 CAAGGACCCGGUGUGAUUCCGGGUGGCUCUUCCGGCCGCUGAUCCGCCGGACCACG .....................................(.....)............ >URS0000D6A5F8_441620/1-56 CCUGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUCACG .....................................(.....)............ >URS0000D6C851_12908/1-64 CUUGGACCCGGCCCUGUUCGCAGGCGACGGGUGGCUAUCCCCGCCGCCGAUCCGCUGGGAAACC .............................................(.....)............ >URS0000D68C64_742159/1-53 AUUGGACCCGGCUUGCCGGGUGGCUCGGCCGGGCGCCUAUCCCUCGGACAACU ..................................(.....)............ >URS0000D67A0B_272630/1-53 GUCGGACCCGGUUUUUCGGGUGGCUCGGCCCGGCGCCAAUCCCCGGGACAACC ..................................(.....)............ >URS0000D6C901_351016/1-58 CAUGGAGCCGGGUGCGAUCCCCGGCUGGCUCUUCCGGCCGCCGAUCCGCCGGACAACA .......................................(.....)............ >URS0000D69AA8_426355/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG .....................................(.....)............ >URS0000D6905C_12908/1-57 CCUGGACCCGGCAGCGAUCCCGGAUGGCGCUUCCGGCCCCCGAUCCGCCGGACAACG ......................................(.....)............ >URS0000D6C964_391613/1-59 CAUGGAUUUCGGGUGCAAUCCCCGGAUGGCUCUUCCGGCCGCCUAUCCGCCGGAUCAUC ........................................(.....)............ >URS0000D6AA31_12908/1-64 CCUGGACCCGCGCCCCUGAGGGGCUUGCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGAGCAAU .............................................(.....)............ >URS0000D67C2B_12908/1-58 UCAGGACCCGGGUGCGAUCCCCGGGUGGCUCCUCCGGCCGCCGAUCCGCCGGACCACC .......................................(.....)............ >URS0000D68A15_349102/1-56 CUUGGACCCGGUGCGAUCCCGGGUGGCUAUUCCGGCCGCUGAUCCGCCGGACAACG .....................................(.....)............ >URS0000D6A4D5_12908/1-56 CAAGGACCCGGUGAGAUUCCGGGUGGCUAUCCCGGCCGCCAAUCCGCCGGGGAAAC .....................................(.....)............ >URS0000D69992_311402/1-53 AUCGGACUCGUUUUGACGAGUGGCUUCUCCGGGCGCCUAUCCCCCGGCCACAG ..................................(.....)............ >URS0000D6BDD8_272630/1-56 ACAGGACCCGGUGAAACCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG .....................................(.....)............ >URS0000D68B3E_12908/1-54 AAUGGACCCGGCUGGACCGGGUGGCUAUCCUGGGCGCCGAUCCCUCAGGGACAC ...................................(.....)............ >URS0000D65DBF_314231/1-56 CAUGGACCCGCAUCUUCCGCGGGUGGCUAUGCCGGGCGCCUAUCCCCCGGCCCAUC .....................................(.....)............ >URS0000D6A087_317655/1-53 ACCGGACCCGGCUCGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAACC ..................................(.....)............ >URS0000D682E5_318586/1-58 CAAGGACUCGGGUGCGAUUCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCAUU .......................................(.....)............ >URS0000D695E0_266779/1-56 ACUGGACCCGGUGAAACUCCGGGUGGCUCUUCCGGCCGCCGACCCGCCGGACAACA .....................................(.....)............ >URS0000D6A6E8_12908/1-57 CUUGGAUCCCGGUUUCAUCCCGGGUGGCUAUUCCGGCCGCCAAUCCGCCGGAGCGAC ......................................(.....)............ >URS0000D65E95_287752/1-53 CAUGGACCUGCCUUGGCAGGUGGCUAUGCCGGGCGCCUAUCCCUCGGCCAAUC ..................................(.....)............ >URS0000D6A92C_391600/1-62 CUUGGACCCGGCCUGUUUGAAGCGUCGGGUGGCUAUCCCGGCCGCCGAUCCGCCGGGAAACC ...........................................(.....)............ >URS0000D6C141_366394/1-56 CCCGGACCCGGUGAAACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG .....................................(.....)............ >URS0000D67501_349102/1-58 CAGGAGUCCGGGUGCAAAUCCCGGAUGGCGAGCCCGGCCGCUGACCUGCCGGGGUAAC .......................................(.....)............ >URS0000D6C820_395963/1-56 UUUGGACCCGGUGUAAUUCCGGGUGGCUCUUCCGGCCGCCAAUCCGCCGGAUAACG .....................................(.....)............ >URS0000D67E63_272630/1-56 GCCGGACCAGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUAACG .....................................(.....)............ >URS0000D6AE26_176299/1-56 CACGGACCCGGUGAAAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG .....................................(.....)............ >URS0000D6BBCD_216596/1-56 CACGGACCCGGUGAGAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG .....................................(.....)............ >URS0000D6ADE4_392499/1-54 GUCGGACCCGGCCGUGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAACC ...................................(.....)............ >URS0000D69540_314232/1-57 CAUGGACCUGGGGGUGACCUCGGGUGGCUCUUCCGGCCGCCUAUCCGCCGGACAACC ......................................(.....)............
2		(CYNAY) ((U)GG)C			40	88.9
>URS0000D6610A_395492/1-56 CACGGACCCGGUGAGACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)..........(.....)............ >URS0000D67501_349102/1-58 CAGGAGUCCGGGUGCAAAUCCCGGAUGGCGAGCCCGGCCGCUGACCUGCCGGGGUAAC ..(..(...................)..)..........(.....)............ >URS0000D6ADE4_392499/1-54 GUCGGACCCGGCCGUGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAACC ....((...............)..)..........(.....)............ >URS0000D67E63_272630/1-56 GCCGGACCAGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUAACG ....((.................)..)..........(.....)............ >URS0000D67A0B_272630/1-53 GUCGGACCCGGUUUUUCGGGUGGCUCGGCCCGGCGCCAAUCCCCGGGACAACC ....((..............)..)..........(.....)............ >URS0000D6C9FE_12908/1-56 CAAGGACCCGGUGUGAUUCCGGGUGGCUCUUCCGGCCGCUGAUCCGCCGGACCACG ....((.................)..)..........(.....)............ >URS0000D699E6_311402/1-56 CACGGACCCGGUGAAAUUCCGGGUGGCUAUUCUGGCCGCCAAUCCGCCAGACAACG ....((.................)..)..........(.....)............ >URS0000D6D026_272943/1-58 UCAGGACCCGGGUGCGAUCCCCGGGUGGCUCCUCCGGCCGCCGAUCCGCCGGACAACC ...(.(...................)..)..........(.....)............ >URS0000D69992_311402/1-53 AUCGGACUCGUUUUGACGAGUGGCUUCUCCGGGCGCCUAUCCCCCGGCCACAG ...((...............)..)..........(.....)............ >URS0000D68C64_742159/1-53 AUUGGACCCGGCUUGCCGGGUGGCUCGGCCGGGCGCCUAUCCCUCGGACAACU ...((...............)..)..........(.....)............ >URS0000D66603_314264/1-59 CAUGGACCCCGGGUGCAAGCCCCGGGUGGCUCUUCCGGCCGCCUAUCCGCCGGAUCAUU ....(.(...................)..)..........(.....)............ >URS0000D6C964_391613/1-59 CAUGGAUUUCGGGUGCAAUCCCCGGAUGGCUCUUCCGGCCGCCUAUCCGCCGGAUCAUC .....((...................)..)..........(.....)............ >URS0000D69AA8_426355/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ....((.................)..)..........(.....)............ >URS0000D6C901_351016/1-58 CAUGGAGCCGGGUGCGAUCCCCGGCUGGCUCUUCCGGCCGCCGAUCCGCCGGACAACA ....((...................)..)..........(.....)............ >URS0000D68A15_349102/1-56 CUUGGACCCGGUGCGAUCCCGGGUGGCUAUUCCGGCCGCUGAUCCGCCGGACAACG ....((.................)..)..........(.....)............ >URS0000D67C2B_12908/1-58 UCAGGACCCGGGUGCGAUCCCCGGGUGGCUCCUCCGGCCGCCGAUCCGCCGGACCACC ...(.(...................)..)..........(.....)............ >URS0000D69BEC_318586/1-58 CAUGGAGCCGGGUGCAACUCCCGGCUGGCUGUUCCGGCCGCCGAUCCGCCGGACAACC ....((...................)..)..........(.....)............ >URS0000D6A087_317655/1-53 ACCGGACCCGGCUCGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAACC ...((...............)..)..........(.....)............ >URS0000D65DBF_314231/1-56 CAUGGACCCGCAUCUUCCGCGGGUGGCUAUGCCGGGCGCCUAUCCCCCGGCCCAUC ....((.................)..)..........(.....)............ >URS0000D6A4D5_12908/1-56 CAAGGACCCGGUGAGAUUCCGGGUGGCUAUCCCGGCCGCCAAUCCGCCGGGGAAAC ....((.................)..)..........(.....)............ >URS0000D6BDD8_272630/1-56 ACAGGACCCGGUGAAACCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ...(.(.................)..)..........(.....)............ >URS0000D6C141_366394/1-56 CCCGGACCCGGUGAAACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)..........(.....)............ >URS0000D68B3E_12908/1-54 AAUGGACCCGGCUGGACCGGGUGGCUAUCCUGGGCGCCGAUCCCUCAGGGACAC ....((...............)..)..........(.....)............ >URS0000D6C820_395963/1-56 UUUGGACCCGGUGUAAUUCCGGGUGGCUCUUCCGGCCGCCAAUCCGCCGGAUAACG ....((.................)..)..........(.....)............ >URS0000D682E5_318586/1-58 CAAGGACUCGGGUGCGAUUCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCAUU ....((...................)..)..........(.....)............ >URS0000D695E0_266779/1-56 ACUGGACCCGGUGAAACUCCGGGUGGCUCUUCCGGCCGCCGACCCGCCGGACAACA ....((.................)..)..........(.....)............ >URS0000D6D0CE_314266/1-56 CAUGGACCCGGUGCAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA ....((.................)..)..........(.....)............ >URS0000D6A6E8_12908/1-57 CUUGGAUCCCGGUUUCAUCCCGGGUGGCUAUUCCGGCCGCCAAUCCGCCGGAGCGAC ...(..(.................)..)..........(.....)............ >URS0000D69540_314232/1-57 CAUGGACCUGGGGGUGACCUCGGGUGGCUCUUCCGGCCGCCUAUCCGCCGGACAACC ....((..................)..)..........(.....)............ >URS0000D65E95_287752/1-53 CAUGGACCUGCCUUGGCAGGUGGCUAUGCCGGGCGCCUAUCCCUCGGCCAAUC ...((...............)..)..........(.....)............ >URS0000D67E30_641118/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCUGGCCGCCUAUCCGCCAGACAACG ....((.................)..)..........(.....)............ >URS0000D672AF_266834/1-56 CCUGGACCCGGUGUAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)..........(.....)............ >URS0000D6B3BE_272630/1-56 CUCGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ....((.................)..)..........(.....)............ >URS0000D68F94_12908/1-62 CUUGGACUCGGCGCCCCUGGGCUGCCGGGUGGCUAUCCCGUCCGCCGAUCCGUCGGGAAACU ....((.......................)..)..........(.....)............ >URS0000D6AE26_176299/1-56 CACGGACCCGGUGAAAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)..........(.....)............ >URS0000D6A92C_391600/1-62 CUUGGACCCGGCCUGUUUGAAGCGUCGGGUGGCUAUCCCGGCCGCCGAUCCGCCGGGAAACC ....((.......................)..)..........(.....)............ >URS0000D6BBCD_216596/1-56 CACGGACCCGGUGAGAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)..........(.....)............ >URS0000D6A5F8_441620/1-56 CCUGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUCACG ....((.................)..)..........(.....)............ >URS0000D697B5_311403/1-56 CACGGACCCGGUGAAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGAUAACG ....((.................)..)..........(.....)............ >URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA ....((.................)..)..........(.....)............
3		(CYNAY) ((U)GG)C (C()C)			37	82.2
>URS0000D699E6_311402/1-56 CACGGACCCGGUGAAAUUCCGGGUGGCUAUUCUGGCCGCCAAUCCGCCAGACAACG ....((.................)..)........(.(.....).).......... >URS0000D67A0B_272630/1-53 GUCGGACCCGGUUUUUCGGGUGGCUCGGCCCGGCGCCAAUCCCCGGGACAACC ....((..............)..)........(.(.....).).......... >URS0000D6D026_272943/1-58 UCAGGACCCGGGUGCGAUCCCCGGGUGGCUCCUCCGGCCGCCGAUCCGCCGGACAACC ...(.(...................)..)........(.(.....).).......... >URS0000D69992_311402/1-53 AUCGGACUCGUUUUGACGAGUGGCUUCUCCGGGCGCCUAUCCCCCGGCCACAG ...((...............)..)........(.(.....).).......... >URS0000D6610A_395492/1-56 CACGGACCCGGUGAGACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)........(.(.....).).......... >URS0000D69BEC_318586/1-58 CAUGGAGCCGGGUGCAACUCCCGGCUGGCUGUUCCGGCCGCCGAUCCGCCGGACAACC ....((...................)..)........(.(.....).).......... >URS0000D65DBF_314231/1-56 CAUGGACCCGCAUCUUCCGCGGGUGGCUAUGCCGGGCGCCUAUCCCCCGGCCCAUC ....((.................)..)........(.(.....).).......... >URS0000D67C2B_12908/1-58 UCAGGACCCGGGUGCGAUCCCCGGGUGGCUCCUCCGGCCGCCGAUCCGCCGGACCACC ...(.(...................)..)........(.(.....).).......... >URS0000D68A15_349102/1-56 CUUGGACCCGGUGCGAUCCCGGGUGGCUAUUCCGGCCGCUGAUCCGCCGGACAACG ....((.................)..)........(.(.....).).......... >URS0000D6A4D5_12908/1-56 CAAGGACCCGGUGAGAUUCCGGGUGGCUAUCCCGGCCGCCAAUCCGCCGGGGAAAC ....((.................)..)........(.(.....).).......... >URS0000D6A087_317655/1-53 ACCGGACCCGGCUCGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAACC ...((...............)..)........(.(.....).).......... >URS0000D69AA8_426355/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ....((.................)..)........(.(.....).).......... >URS0000D68B3E_12908/1-54 AAUGGACCCGGCUGGACCGGGUGGCUAUCCUGGGCGCCGAUCCCUCAGGGACAC ....((...............)..)........(.(.....).).......... >URS0000D6C964_391613/1-59 CAUGGAUUUCGGGUGCAAUCCCCGGAUGGCUCUUCCGGCCGCCUAUCCGCCGGAUCAUC .....((...................)..)........(.(.....).).......... >URS0000D695E0_266779/1-56 ACUGGACCCGGUGAAACUCCGGGUGGCUCUUCCGGCCGCCGACCCGCCGGACAACA ....((.................)..)........(.(.....).).......... >URS0000D6C141_366394/1-56 CCCGGACCCGGUGAAACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)........(.(.....).).......... >URS0000D6D0CE_314266/1-56 CAUGGACCCGGUGCAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA ....((.................)..)........(.(.....).).......... >URS0000D6C820_395963/1-56 UUUGGACCCGGUGUAAUUCCGGGUGGCUCUUCCGGCCGCCAAUCCGCCGGAUAACG ....((.................)..)........(.(.....).).......... >URS0000D672AF_266834/1-56 CCUGGACCCGGUGUAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)........(.(.....).).......... >URS0000D65E95_287752/1-53 CAUGGACCUGCCUUGGCAGGUGGCUAUGCCGGGCGCCUAUCCCUCGGCCAAUC ...((...............)..)........(.(.....).).......... >URS0000D67E30_641118/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCUGGCCGCCUAUCCGCCAGACAACG ....((.................)..)........(.(.....).).......... >URS0000D6B3BE_272630/1-56 CUCGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ....((.................)..)........(.(.....).).......... >URS0000D6C901_351016/1-58 CAUGGAGCCGGGUGCGAUCCCCGGCUGGCUCUUCCGGCCGCCGAUCCGCCGGACAACA ....((...................)..)........(.(.....).).......... >URS0000D6BDD8_272630/1-56 ACAGGACCCGGUGAAACCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ...(.(.................)..)........(.(.....).).......... >URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA ....((.................)..)........(.(.....).).......... >URS0000D697B5_311403/1-56 CACGGACCCGGUGAAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGAUAACG ....((.................)..)........(.(.....).).......... >URS0000D66603_314264/1-59 CAUGGACCCCGGGUGCAAGCCCCGGGUGGCUCUUCCGGCCGCCUAUCCGCCGGAUCAUU ....(.(...................)..)........(.(.....).).......... >URS0000D67E63_272630/1-56 GCCGGACCAGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUAACG ....((.................)..)........(.(.....).).......... >URS0000D69540_314232/1-57 CAUGGACCUGGGGGUGACCUCGGGUGGCUCUUCCGGCCGCCUAUCCGCCGGACAACC ....((..................)..)........(.(.....).).......... >URS0000D6AE26_176299/1-56 CACGGACCCGGUGAAAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)........(.(.....).).......... >URS0000D682E5_318586/1-58 CAAGGACUCGGGUGCGAUUCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCAUU ....((...................)..)........(.(.....).).......... >URS0000D6BBCD_216596/1-56 CACGGACCCGGUGAGAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)........(.(.....).).......... >URS0000D6A5F8_441620/1-56 CCUGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUCACG ....((.................)..)........(.(.....).).......... >URS0000D6C9FE_12908/1-56 CAAGGACCCGGUGUGAUUCCGGGUGGCUCUUCCGGCCGCUGAUCCGCCGGACCACG ....((.................)..)........(.(.....).).......... >URS0000D6ADE4_392499/1-54 GUCGGACCCGGCCGUGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAACC ....((...............)..)........(.(.....).).......... >URS0000D6A6E8_12908/1-57 CUUGGAUCCCGGUUUCAUCCCGGGUGGCUAUUCCGGCCGCCAAUCCGCCGGAGCGAC ...(..(.................)..)........(.(.....).).......... >URS0000D68C64_742159/1-53 AUUGGACCCGGCUUGCCGGGUGGCUCGGCCGGGCGCCUAUCCCUCGGACAACU ...((...............)..)........(.(.....).)..........
4		(CYNAY) ((U)GG)C (C()C) (N()NRN)			25	55.6
>URS0000D6C9FE_12908/1-56 CAAGGACCCGGUGUGAUUCCGGGUGGCUCUUCCGGCCGCUGAUCCGCCGGACCACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D67E63_272630/1-56 GCCGGACCAGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUAACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D69AA8_426355/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D6A6E8_12908/1-57 CUUGGAUCCCGGUUUCAUCCCGGGUGGCUAUUCCGGCCGCCAAUCCGCCGGAGCGAC ...(..(.................)..)(.(.....(.(.....).).....)...) >URS0000D66603_314264/1-59 CAUGGACCCCGGGUGCAAGCCCCGGGUGGCUCUUCCGGCCGCCUAUCCGCCGGAUCAUU ....(.(...................)..)(.(.....(.(.....).).....)...) >URS0000D6A087_317655/1-53 ACCGGACCCGGCUCGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAACC ...((...............)..)(.(.....(.(.....).).....)...) >URS0000D6B3BE_272630/1-56 CUCGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D6D0CE_314266/1-56 CAUGGACCCGGUGCAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D6ADE4_392499/1-54 GUCGGACCCGGCCGUGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAACC ....((...............)..)(.(.....(.(.....).).....)...) >URS0000D697B5_311403/1-56 CACGGACCCGGUGAAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGAUAACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D67E30_641118/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCUGGCCGCCUAUCCGCCAGACAACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D6C820_395963/1-56 UUUGGACCCGGUGUAAUUCCGGGUGGCUCUUCCGGCCGCCAAUCCGCCGGAUAACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D6BDD8_272630/1-56 ACAGGACCCGGUGAAACCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ...(.(.................)..)(.(.....(.(.....).).....)...) >URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D699E6_311402/1-56 CACGGACCCGGUGAAAUUCCGGGUGGCUAUUCUGGCCGCCAAUCCGCCAGACAACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D6AE26_176299/1-56 CACGGACCCGGUGAAAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D6BBCD_216596/1-56 CACGGACCCGGUGAGAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D682E5_318586/1-58 CAAGGACUCGGGUGCGAUUCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCAUU ....((...................)..)(.(.....(.(.....).).....)...) >URS0000D68A15_349102/1-56 CUUGGACCCGGUGCGAUCCCGGGUGGCUAUUCCGGCCGCUGAUCCGCCGGACAACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D672AF_266834/1-56 CCUGGACCCGGUGUAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D6610A_395492/1-56 CACGGACCCGGUGAGACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D6C901_351016/1-58 CAUGGAGCCGGGUGCGAUCCCCGGCUGGCUCUUCCGGCCGCCGAUCCGCCGGACAACA ....((...................)..)(.(.....(.(.....).).....)...) >URS0000D6A5F8_441620/1-56 CCUGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUCACG ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D695E0_266779/1-56 ACUGGACCCGGUGAAACUCCGGGUGGCUCUUCCGGCCGCCGACCCGCCGGACAACA ....((.................)..)(.(.....(.(.....).).....)...) >URS0000D6C141_366394/1-56 CCCGGACCCGGUGAAACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((.................)..)(.(.....(.(.....).).....)...)
5		(CYNAY) ((U)GG)C (C()C) (N()NRN) ((N)NN)C			20	44.4
>URS0000D6C9FE_12908/1-56 CAAGGACCCGGUGUGAUUCCGGGUGGCUCUUCCGGCCGCUGAUCCGCCGGACCACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6BDD8_272630/1-56 ACAGGACCCGGUGAAACCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ...(.(....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6C820_395963/1-56 UUUGGACCCGGUGUAAUUCCGGGUGGCUCUUCCGGCCGCCAAUCCGCCGGAUAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6A5F8_441620/1-56 CCUGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUCACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6C141_366394/1-56 CCCGGACCCGGUGAAACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D672AF_266834/1-56 CCUGGACCCGGUGUAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6BBCD_216596/1-56 CACGGACCCGGUGAGAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6610A_395492/1-56 CACGGACCCGGUGAGACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D695E0_266779/1-56 ACUGGACCCGGUGAAACUCCGGGUGGCUCUUCCGGCCGCCGACCCGCCGGACAACA ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6AE26_176299/1-56 CACGGACCCGGUGAAAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D69AA8_426355/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6B3BE_272630/1-56 CUCGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D699E6_311402/1-56 CACGGACCCGGUGAAAUUCCGGGUGGCUAUUCUGGCCGCCAAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6D0CE_314266/1-56 CAUGGACCCGGUGCAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D67E63_272630/1-56 GCCGGACCAGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D68A15_349102/1-56 CUUGGACCCGGUGCGAUCCCGGGUGGCUAUUCCGGCCGCUGAUCCGCCGGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6A6E8_12908/1-57 CUUGGAUCCCGGUUUCAUCCCGGGUGGCUAUUCCGGCCGCCAAUCCGCCGGAGCGAC ...(..(....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D67E30_641118/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCUGGCCGCCUAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D697B5_311403/1-56 CACGGACCCGGUGAAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGAUAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA ....((....((...)..)....)..)(.(.....(.(.....).).....)...)
6		(CYNAY) ((U)GG)C (C()C) (N()NRN) ((N)NN)C N(GNN)A			19	42.2
>URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D68A15_349102/1-56 CUUGGACCCGGUGCGAUCCCGGGUGGCUAUUCCGGCCGCUGAUCCGCCGGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6AE26_176299/1-56 CACGGACCCGGUGAAAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6610A_395492/1-56 CACGGACCCGGUGAGACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D697B5_311403/1-56 CACGGACCCGGUGAAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGAUAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6C9FE_12908/1-56 CAAGGACCCGGUGUGAUUCCGGGUGGCUCUUCCGGCCGCUGAUCCGCCGGACCACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6C141_366394/1-56 CCCGGACCCGGUGAAACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D67E63_272630/1-56 GCCGGACCAGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D67E30_641118/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCUGGCCGCCUAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6D0CE_314266/1-56 CAUGGACCCGGUGCAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D699E6_311402/1-56 CACGGACCCGGUGAAAUUCCGGGUGGCUAUUCUGGCCGCCAAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6BBCD_216596/1-56 CACGGACCCGGUGAGAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D672AF_266834/1-56 CCUGGACCCGGUGUAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6C820_395963/1-56 UUUGGACCCGGUGUAAUUCCGGGUGGCUCUUCCGGCCGCCAAUCCGCCGGAUAACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6A5F8_441620/1-56 CCUGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUCACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6BDD8_272630/1-56 ACAGGACCCGGUGAAACCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ...(.(....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6B3BE_272630/1-56 CUCGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D695E0_266779/1-56 ACUGGACCCGGUGAAACUCCGGGUGGCUCUUCCGGCCGCCGACCCGCCGGACAACA ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D69AA8_426355/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG ....((....((...)..)....)..)(.(.....(.(.....).).....)...)

>URS0000D67E30_641118/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCUGGCCGCCUAUCCGCCAGACAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D697B5_311403/1-56 CACGGACCCGGUGAAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGAUAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D672AF_266834/1-56 CCUGGACCCGGUGUAACUCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D699E6_311402/1-56 CACGGACCCGGUGAAAUUCCGGGUGGCUAUUCUGGCCGCCAAUCCGCCAGACAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6610A_395492/1-56 CACGGACCCGGUGAGACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6B3BE_272630/1-56 CUCGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6D0CE_314266/1-56 CAUGGACCCGGUGCAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6C9FE_12908/1-56 CAAGGACCCGGUGUGAUUCCGGGUGGCUCUUCCGGCCGCUGAUCCGCCGGACCACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6A5F8_441620/1-56 CCUGGACCCGGUGCAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUCACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D69AA8_426355/1-56 CAAGGACCCGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D68A15_349102/1-56 CUUGGACCCGGUGCGAUCCCGGGUGGCUAUUCCGGCCGCUGAUCCGCCGGACAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6BDD8_272630/1-56 ACAGGACCCGGUGAAACCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCACG .....................................(.....)............ ...(.(.................)..)..........(.....)............ ...(.(.................)..)........(.(.....).).......... ...(.(.................)..)(.(.....(.(.....).).....)...) ...(.(....((...)..)....)..)(.(.....(.(.....).).....)...) ...(.(....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D695E0_266779/1-56 ACUGGACCCGGUGAAACUCCGGGUGGCUCUUCCGGCCGCCGACCCGCCGGACAACA .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6C141_366394/1-56 CCCGGACCCGGUGAAACCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6C820_395963/1-56 UUUGGACCCGGUGUAAUUCCGGGUGGCUCUUCCGGCCGCCAAUCCGCCGGAUAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D67E63_272630/1-56 GCCGGACCAGGUGAAAGCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGAUAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6AE26_176299/1-56 CACGGACCCGGUGAAAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6BBCD_216596/1-56 CACGGACCCGGUGAGAUCCCGGGUGGCUCUUCUGGCCGCCGAUCCGCCAGACAACG .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... ....((.................)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) ....((....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D6A6E8_12908/1-57 CUUGGAUCCCGGUUUCAUCCCGGGUGGCUAUUCCGGCCGCCAAUCCGCCGGAGCGAC ......................................(.....)............ ...(..(.................)..)..........(.....)............ ...(..(.................)..)........(.(.....).).......... ...(..(.................)..)(.(.....(.(.....).).....)...) ...(..(....((...)..)....)..)(.(.....(.(.....).).....)...) >URS0000D66603_314264/1-59 CAUGGACCCCGGGUGCAAGCCCCGGGUGGCUCUUCCGGCCGCCUAUCCGCCGGAUCAUU ........................................(.....)............ ....(.(...................)..)..........(.....)............ ....(.(...................)..)........(.(.....).).......... ....(.(...................)..)(.(.....(.(.....).).....)...) >URS0000D6C901_351016/1-58 CAUGGAGCCGGGUGCGAUCCCCGGCUGGCUCUUCCGGCCGCCGAUCCGCCGGACAACA .......................................(.....)............ ....((...................)..)..........(.....)............ ....((...................)..)........(.(.....).).......... ....((...................)..)(.(.....(.(.....).).....)...) >URS0000D6A087_317655/1-53 ACCGGACCCGGCUCGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAACC ..................................(.....)............ ...((...............)..)..........(.....)............ ...((...............)..)........(.(.....).).......... ...((...............)..)(.(.....(.(.....).).....)...) >URS0000D682E5_318586/1-58 CAAGGACUCGGGUGCGAUUCCCGGGUGGCUCUUCCGGCCGCCGAUCCGCCGGACCAUU .......................................(.....)............ ....((...................)..)..........(.....)............ ....((...................)..)........(.(.....).).......... ....((...................)..)(.(.....(.(.....).).....)...) >URS0000D6ADE4_392499/1-54 GUCGGACCCGGCCGUGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAACC ...................................(.....)............ ....((...............)..)..........(.....)............ ....((...............)..)........(.(.....).).......... ....((...............)..)(.(.....(.(.....).).....)...) >URS0000D6D026_272943/1-58 UCAGGACCCGGGUGCGAUCCCCGGGUGGCUCCUCCGGCCGCCGAUCCGCCGGACAACC .......................................(.....)............ ...(.(...................)..)..........(.....)............ ...(.(...................)..)........(.(.....).).......... >URS0000D69BEC_318586/1-58 CAUGGAGCCGGGUGCAACUCCCGGCUGGCUGUUCCGGCCGCCGAUCCGCCGGACAACC .......................................(.....)............ ....((...................)..)..........(.....)............ ....((...................)..)........(.(.....).).......... >URS0000D68C64_742159/1-53 AUUGGACCCGGCUUGCCGGGUGGCUCGGCCGGGCGCCUAUCCCUCGGACAACU ..................................(.....)............ ...((...............)..)..........(.....)............ ...((...............)..)........(.(.....).).......... >URS0000D67A0B_272630/1-53 GUCGGACCCGGUUUUUCGGGUGGCUCGGCCCGGCGCCAAUCCCCGGGACAACC ..................................(.....)............ ....((..............)..)..........(.....)............ ....((..............)..)........(.(.....).).......... >URS0000D6C964_391613/1-59 CAUGGAUUUCGGGUGCAAUCCCCGGAUGGCUCUUCCGGCCGCCUAUCCGCCGGAUCAUC ........................................(.....)............ .....((...................)..)..........(.....)............ .....((...................)..)........(.(.....).).......... >URS0000D67C2B_12908/1-58 UCAGGACCCGGGUGCGAUCCCCGGGUGGCUCCUCCGGCCGCCGAUCCGCCGGACCACC .......................................(.....)............ ...(.(...................)..)..........(.....)............ ...(.(...................)..)........(.(.....).).......... >URS0000D6A4D5_12908/1-56 CAAGGACCCGGUGAGAUUCCGGGUGGCUAUCCCGGCCGCCAAUCCGCCGGGGAAAC .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... >URS0000D69992_311402/1-53 AUCGGACUCGUUUUGACGAGUGGCUUCUCCGGGCGCCUAUCCCCCGGCCACAG ..................................(.....)............ ...((...............)..)..........(.....)............ ...((...............)..)........(.(.....).).......... >URS0000D68B3E_12908/1-54 AAUGGACCCGGCUGGACCGGGUGGCUAUCCUGGGCGCCGAUCCCUCAGGGACAC ...................................(.....)............ ....((...............)..)..........(.....)............ ....((...............)..)........(.(.....).).......... >URS0000D65DBF_314231/1-56 CAUGGACCCGCAUCUUCCGCGGGUGGCUAUGCCGGGCGCCUAUCCCCCGGCCCAUC .....................................(.....)............ ....((.................)..)..........(.....)............ ....((.................)..)........(.(.....).).......... >URS0000D65E95_287752/1-53 CAUGGACCUGCCUUGGCAGGUGGCUAUGCCGGGCGCCUAUCCCUCGGCCAAUC ..................................(.....)............ ...((...............)..)..........(.....)............ ...((...............)..)........(.(.....).).......... >URS0000D69540_314232/1-57 CAUGGACCUGGGGGUGACCUCGGGUGGCUCUUCCGGCCGCCUAUCCGCCGGACAACC ......................................(.....)............ ....((..................)..)..........(.....)............ ....((..................)..)........(.(.....).).......... >URS0000D68F94_12908/1-62 CUUGGACUCGGCGCCCCUGGGCUGCCGGGUGGCUAUCCCGUCCGCCGAUCCGUCGGGAAACU ...........................................(.....)............ ....((.......................)..)..........(.....)............ >URS0000D6A92C_391600/1-62 CUUGGACCCGGCCUGUUUGAAGCGUCGGGUGGCUAUCCCGGCCGCCGAUCCGCCGGGAAACC ...........................................(.....)............ ....((.......................)..)..........(.....)............ >URS0000D67501_349102/1-58 CAGGAGUCCGGGUGCAAAUCCCGGAUGGCGAGCCCGGCCGCUGACCUGCCGGGGUAAC .......................................(.....)............ ..(..(...................)..)..........(.....)............ >URS0000D68922_12908/1-64 CUUGGACCCGGCCCUGUUCGCAGGCGACGGGUGGCUAUCCCCGCCGCCGAUCCGCUGGGAAACU .............................................(.....)............ >URS0000D6C851_12908/1-64 CUUGGACCCGGCCCUGUUCGCAGGCGACGGGUGGCUAUCCCCGCCGCCGAUCCGCUGGGAAACC .............................................(.....)............ >URS0000D6905C_12908/1-57 CCUGGACCCGGCAGCGAUCCCGGAUGGCGCUUCCGGCCCCCGAUCCGCCGGACAACG ......................................(.....)............ >URS0000D6AA31_12908/1-64 CCUGGACCCGCGCCCCUGAGGGGCUUGCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGAGCAAU .............................................(.....)............

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	(CYNAY)			< 0.001		241

URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .........1.........2.........3.........4.........5...... 12345678901234567890123456789012345678901234567890123456
2	((U)GG)C			< 0.001		193

URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .........1.........2.........3.........4.........5...... 12345678901234567890123456789012345678901234567890123456
3	(C()C)			< 0.001		9.98

URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .........1.........2.........3.........4.........5...... 12345678901234567890123456789012345678901234567890123456
4	(N()NRN)			< 0.001		6.51

URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .........1.........2.........3.........4.........5...... 12345678901234567890123456789012345678901234567890123456
5	((N)NN)C			< 0.001		4.01

URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .........1.........2.........3.........4.........5...... 12345678901234567890123456789012345678901234567890123456
6	N(GNN)A			< 0.001		8.91

URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .........1.........2.........3.........4.........5...... 12345678901234567890123456789012345678901234567890123456
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	(CYNAY)			< 0.001		241

URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .........1.........2.........3.........4.........5...... 12345678901234567890123456789012345678901234567890123456
2	((N)GG)Y			< 0.001		25.5

URS0000D67D60_279238/1-56 CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA CAAGGACCCGGUGAAAUUCCGGGUGGCUAUUCCGGCCGCCGAUCCGCCGGACAACA .........1.........2.........3.........4.........5...... 12345678901234567890123456789012345678901234567890123456
3	(AGC()C)			1		14.7
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).