D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Hammerhead ribozyme (type III)   (Rfam: RF00008)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(().UGA.())
Y(GA(G))
(GNRN)
(.NN.)
(R()N)
((G)YN)C
100.0
98.8
97.6
100.0
100.0
84.1
(().UGA.())
Y(GA(G))
(GNRN)

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.8 %
(± 0.145 %)
Decision tree:

5-fold cross-validation: 93.9 %
(± 2.84 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 97.1 %
(± 1.25 %)
of AJ241831.1/281-334
AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
(.((((((..(((...)..)))...(..((((((....))))))..)))))).)
.........1.........2.........3.........4.........5....
123456789012345678901234567890123456789012345678901234

abstract shape: (()())

Number of sequences
Structure ORBs (out of 82) (%)
1 (().UGA.())
 76 92.7
>J02386.1/42-95
UGUCCGUAGUGGAUGUGUAUCCACUCUGAUGAGUCCAAAAGGACGAAACGGAUG
......(.(..............).....(................))......
>AJ005314.1/281-334
AAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUU
......((.............)...(....................))......
>AJ241833.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(....................).).....
>AJ550903.1/281-333
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(....................).).....
>AJ005322.1/281-334
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUU
......((.............)...(....................))......
>AF170516.1/283-335
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC
.....((.............)...(....................).).....
>AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
......((.............)...(....................))......
>AJ005299.1/282-335
UAAGAGUCUGUGCUAAGCACACUGAUGAAUCUCUGAAAUGAGACGAAACUCUUG
......((.............)...(....................))......
>AJ241845.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUG
......((.............)...(....................))......
>AJ005312.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUAUGAAAUGAGACGAAACUCAUA
......((.............)...(....................))......
>AJ005320.1/281-333
GAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(....................).).....
>AJ550911.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUC
......((.............)...(....................))......
>AF170520.1/282-335
GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
......((.............)...(....................))......
>AF170503.1/280-333
GAAAGGUCUGUGCUUAGCACACUGACGAGUUCCUGAAAUGGAACGAAACCUUUU
......((.............)...(....................))......
>AJ550906.1/282-334
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
.....((.............)...(....................).).....
>J02439.1/42-95
UGUCCGUAGUGGAUGUGUAUCCACUCUGAUGAGUCCGAAAGGACGAAACGGAUG
......(.(..............).....(................))......
>AJ550898.1/282-335
GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAAAUAAGACGAAACUCUUC
......((.............)...(....................))......
>M63666.1/246-192
CCGGUGUCUCAAGGUGCGUACCUUGACUGAUGAGUCCGAAAGGACGAAACACCAG
......(..(..............).....(................))......
>AJ005305.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGACGAGCCGCUGGGAUACGGCGAAACUUUUG
......((.............)...(....................))......
>AF170503.1/55-3
CAUAAGUCUGGGCUUAGCCACUGACGAGUCGCUGGGAUACGGCGAAACUUAUG
....((..............)....(.....................))....
>AF170523.1/55-3
CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((............)...(....................))......
>AJ241847.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUG
......((.............)...(....................))......
>AF170504.1/284-337
GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
......((.............)...(....................))......
>AF170519.1/55-3
CAUAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((............)...(....................))......
>D00685.1/1-46
GCCAGACGUGGACCCGGCCUGAUGAGUCCGAAAGGACGAAACAGUA
..((..............)...(.................).)...
>AJ005322.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGACGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(....................))......
>AJ005318.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGUGAAACUUAUG
......((.............)...(....................))......
>AJ241828.1/56-3
CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(....................))......
>AJ241831.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUG
......((.............)...(....................))......
>AJ005319.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(....................))......
>AF339740.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUG
......((.............)...(....................))......
>AJ550909.1/282-333
GAAGAGUCGCGCUUAGCGCACUGAUGAGUCUCUGAAUGAGACGAAACUCUUC
.....((.............)...(....................)).....
>AJ241839.1/282-334
GAUGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUA
.....((.............)...(....................).).....
>AF170509.1/56-3
CAUAAGUCUAGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(....................))......
>AJ005298.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((.............)...(....................))......
>AJ241819.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUG
......((.............)...(....................))......
>AJ005302.1/281-334
AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAUUGAGACGAAACUCUUG
......((.............)...(....................))......
>AF339739.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(....................))......
>AJ005303.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((.............)...(....................))......
>AJ005300.1/282-335
UAAGAGUCUGUGGUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
......((.............)...(....................))......
>AJ005312.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCUAAACUUUUG
......((.............)...(....................))......
>AJ550900.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG
......((.............)...(....................))......
>AJ536617.1/1-40
GGGUGGUGUGUACCACCCCUGAUGAGUCCGAAAGGACGAA
...((.............)...(..............)).
>AJ550899.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG
......((.............)...(....................))......
>M33000.1/55-110
ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCUAAAGGACGAAACAGCGC
........((..............).....(...............))........
>AJ550908.1/281-334
GAAGAGUCUGCGCUUAGCGCACUCAUGAGUCUCUGAGAUGAGACGAAACUCUUC
......((.............)......(.................))......
>AF170499.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(....................))......
>M33001.1/56-111
ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCUAAAGGACGAAACAGCGC
........((..............).....(...............))........
>AJ536620.1/1-40
GGGUGGUGUGUGCCACCCCUGAUGAGUCCGAAAGGACGAA
...((.............)...(..............)).
>AJ241840.1/56-3
CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(....................))......
>AJ005310.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(....................))......
>AJ241838.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAACUUUUG
......((.............)...(....................))......
>AJ550912.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAGAUGCGACGAAACUUUUG
......((.............)...(....................))......
>AJ550911.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAAACGCAACGAAACUUUUG
......((.............)...(....................))......
>AJ241843.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUG
......((.............)...(....................))......
>AJ550909.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUUGCUGCGAUGCAACGAAACUUAUG
......((.............)...(....................))......
>AJ550906.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
......((.............)...(....................))......
>M83545.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGUCGCUGAAAUGCGACGAAACUUAUG
......((.............)...(....................))......
>AJ550907.1/56-3
CAUAAGUCUGGGCUUAGCCUACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
......((.............)...(....................))......
>AJ536620.1/206-152
CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAAAAGGGCGAAACGGUAC
......(..(..............).....(................))......
>AJ005321.1/281-333
GAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(....................).).....
>AJ550901.1/282-334
GAAGAGUCGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC
.....((.............)...(....................).).....
>AJ536619.1/206-152
CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGAAAGGACGAAACGGUAC
......(..(..............).....(................))......
>AJ536614.1/206-152
UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAAAAGGGCGAAACGGUAC
......(..(..............).....(................))......
>AJ005294.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(....................).).....
>AJ536612.1/206-152
UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGAAAGGGCGAAACGGUAC
......(..(..............).....(................))......
>M17439.1/1-48
ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAGGACGAAACAGGAC
....(..(...........)...(.................)).....
>AJ241850.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAAGAGACGAAACUCUUU
.....((.............)...(....................).).....
>AJ550907.1/281-333
AAAGAGUCGCGCUUAGCGCACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
.....((.............)...(....................).).....
>AJ241841.1/57-3
CAAAAGUUUGGGCUAAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)....(....................))......
>Y12833.1/339-285
CCGCUAUAUGGGGAUGUGUGUCCCUACUGACGAGUUCAAAAGAACGAAAUAGUUA
......(..(..............).....(................))......
>AJ241830.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(....................).).....
>AJ550910.1/282-336
GAAGAGUCCUGCGCUUAGCGCACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
......(.(.............)...(....................))......
>AJ536615.1/1-44
GGGUGGUGUGUACCAUCCCUGAUGAGUCCAAAAGGACGAAAUGG
...((.............)...(.................).).
>AJ241823.1/282-335
AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUAAAAUGAGACGAAACUCUUU
......((.............)...(....................))......
>M83545.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
......((.............)...(....................))......
2 (().UGA.())
Y(GA(G))
 59 72.0
>AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
......((.............)...(..(..............)..))......
>AF339739.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(..(..............)..))......
>AJ005320.1/281-333
GAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(..(..............)..).).....
>AJ550911.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUC
......((.............)...(..(..............)..))......
>AF170509.1/56-3
CAUAAGUCUAGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(..(..............)..))......
>AF170499.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(..(..............)..))......
>AJ005318.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGUGAAACUUAUG
......((.............)...(..(..............)..))......
>AJ550903.1/281-333
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(..(..............)..).).....
>M33001.1/56-111
ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCUAAAGGACGAAACAGCGC
........((..............).....(..(...........)))........
>AJ241840.1/56-3
CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(..(..............)..))......
>AJ550912.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAGAUGCGACGAAACUUUUG
......((.............)...(..(..............)..))......
>AJ005310.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(..(..............)..))......
>AJ241828.1/56-3
CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(..(..............)..))......
>AJ241838.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAACUUUUG
......((.............)...(..(..............)..))......
>AJ005298.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((.............)...(..(..............)..))......
>AJ241843.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUG
......((.............)...(..(..............)..))......
>AJ005322.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGACGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(..(..............)..))......
>AJ550906.1/282-334
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
.....((.............)...(..(..............)..).).....
>AJ550900.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG
......((.............)...(..(..............)..))......
>AJ241845.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUG
......((.............)...(..(..............)..))......
>AJ241847.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUG
......((.............)...(..(..............)..))......
>AJ550909.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUUGCUGCGAUGCAACGAAACUUAUG
......((.............)...(..(..............)..))......
>AF170519.1/55-3
CAUAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((............)...(..(..............)..))......
>AJ550911.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAAACGCAACGAAACUUUUG
......((.............)...(..(..............)..))......
>AJ550907.1/56-3
CAUAAGUCUGGGCUUAGCCUACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
......((.............)...(..(..............)..))......
>AF339740.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUG
......((.............)...(..(..............)..))......
>AJ550906.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
......((.............)...(..(..............)..))......
>AJ005300.1/282-335
UAAGAGUCUGUGGUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
......((.............)...(..(..............)..))......
>AJ005303.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((.............)...(..(..............)..))......
>AJ005302.1/281-334
AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAUUGAGACGAAACUCUUG
......((.............)...(..(..............)..))......
>M83545.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGUCGCUGAAAUGCGACGAAACUUAUG
......((.............)...(..(..............)..))......
>AJ005314.1/281-334
AAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUU
......((.............)...(..(..............)..))......
>AJ005321.1/281-333
GAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(..(..............)..).).....
>AJ550898.1/282-335
GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAAAUAAGACGAAACUCUUC
......((.............)...(..(..............)..))......
>AJ550901.1/282-334
GAAGAGUCGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC
.....((.............)...(..(..............)..).).....
>AJ005294.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(..(..............)..).).....
>AJ241850.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAAGAGACGAAACUCUUU
.....((.............)...(..(..............)..).).....
>AJ550907.1/281-333
AAAGAGUCGCGCUUAGCGCACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
.....((.............)...(..(..............)..).).....
>AJ241823.1/282-335
AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUAAAAUGAGACGAAACUCUUU
......((.............)...(..(..............)..))......
>AJ241839.1/282-334
GAUGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUA
.....((.............)...(..(..............)..).).....
>AJ241841.1/57-3
CAAAAGUUUGGGCUAAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)....(..(..............)..))......
>M83545.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
......((.............)...(..(..............)..))......
>AJ005312.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUAUGAAAUGAGACGAAACUCAUA
......((.............)...(..(..............)..))......
>AF170503.1/280-333
GAAAGGUCUGUGCUUAGCACACUGACGAGUUCCUGAAAUGGAACGAAACCUUUU
......((.............)...(..(..............)..))......
>AJ241830.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(..(..............)..).).....
>AF170523.1/55-3
CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((............)...(..(..............)..))......
>AJ550910.1/282-336
GAAGAGUCCUGCGCUUAGCGCACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
......(.(.............)...(..(..............)..))......
>AF170504.1/284-337
GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
......((.............)...(..(..............)..))......
>AJ005305.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGACGAGCCGCUGGGAUACGGCGAAACUUUUG
......((.............)...(..(..............)..))......
>AF170516.1/283-335
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC
.....((.............)...(..(..............)..).).....
>AJ005319.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(..(..............)..))......
>AJ550899.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG
......((.............)...(..(..............)..))......
>AJ241819.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUG
......((.............)...(..(..............)..))......
>AF170520.1/282-335
GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
......((.............)...(..(..............)..))......
>AJ241833.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(..(..............)..).).....
>AJ005322.1/281-334
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUU
......((.............)...(..(..............)..))......
>AJ005312.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCUAAACUUUUG
......((.............)...(..(..............)..))......
>AJ241831.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUG
......((.............)...(..(..............)..))......
>M33000.1/55-110
ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCUAAAGGACGAAACAGCGC
........((..............).....(..(...........)))........
3 (().UGA.())
Y(GA(G))
(GNRN)
 54 65.9
>AF170499.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AJ550907.1/281-333
AAAGAGUCGCGCUUAGCGCACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
.....((.............)...(..(....(....)....)..).).....
>AJ550898.1/282-335
GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAAAUAAGACGAAACUCUUC
......((.............)...(..(....(....)....)..))......
>AJ005303.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AJ241840.1/56-3
CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AF170509.1/56-3
CAUAAGUCUAGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AF170516.1/283-335
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC
.....((.............)...(..(....(....)....)..).).....
>AJ550910.1/282-336
GAAGAGUCCUGCGCUUAGCGCACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
......(.(.............)...(..(....(....)....)..))......
>AJ550906.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AJ550911.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAAACGCAACGAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AJ005319.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AJ241828.1/56-3
CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AJ241839.1/282-334
GAUGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUA
.....((.............)...(..(....(....)....)..).).....
>AJ550906.1/282-334
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
.....((.............)...(..(....(....)....)..).).....
>AF170504.1/284-337
GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
......((.............)...(..(....(....)....)..))......
>AJ005320.1/281-333
GAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(..(....(....)....)..).).....
>AJ241838.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AF170503.1/280-333
GAAAGGUCUGUGCUUAGCACACUGACGAGUUCCUGAAAUGGAACGAAACCUUUU
......((.............)...(..(....(....)....)..))......
>AJ005305.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGACGAGCCGCUGGGAUACGGCGAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AJ550899.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
......((.............)...(..(....(....)....)..))......
>AJ005310.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AJ241819.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AJ550912.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAGAUGCGACGAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AJ241850.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAAGAGACGAAACUCUUU
.....((.............)...(..(....(....)....)..).).....
>AJ241841.1/57-3
CAAAAGUUUGGGCUAAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)....(..(....(....)....)..))......
>AJ241833.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(..(....(....)....)..).).....
>AJ005321.1/281-333
GAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(..(....(....)....)..).).....
>AJ005314.1/281-334
AAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUU
......((.............)...(..(....(....)....)..))......
>AJ241831.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUG
......((.............)...(..(....(....)....)..))......
>AJ005322.1/281-334
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUU
......((.............)...(..(....(....)....)..))......
>AJ005312.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCUAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AF339739.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AF170520.1/282-335
GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
......((.............)...(..(....(....)....)..))......
>AJ005298.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AJ241843.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUG
......((.............)...(..(....(....)....)..))......
>AJ241845.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUG
......((.............)...(..(....(....)....)..))......
>AJ241847.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUG
......((.............)...(..(....(....)....)..))......
>AF339740.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUG
......((.............)...(..(....(....)....)..))......
>AJ550907.1/56-3
CAUAAGUCUGGGCUUAGCCUACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AJ550911.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUC
......((.............)...(..(....(....)....)..))......
>AJ005302.1/281-334
AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAUUGAGACGAAACUCUUG
......((.............)...(..(....(....)....)..))......
>M83545.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGUCGCUGAAAUGCGACGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AJ005322.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGACGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AJ005300.1/282-335
UAAGAGUCUGUGGUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
......((.............)...(..(....(....)....)..))......
>AJ550909.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUUGCUGCGAUGCAACGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AJ550900.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>AJ005294.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(..(....(....)....)..).).....
>AJ550901.1/282-334
GAAGAGUCGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC
.....((.............)...(..(....(....)....)..).).....
>AJ005318.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGUGAAACUUAUG
......((.............)...(..(....(....)....)..))......
>M83545.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
......((.............)...(..(....(....)....)..))......
>AJ005312.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUAUGAAAUGAGACGAAACUCAUA
......((.............)...(..(....(....)....)..))......
>AJ550903.1/281-333
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(..(....(....)....)..).).....
>AJ241830.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(..(....(....)....)..).).....
4 (().UGA.())
Y(GA(G))
(GNRN)
(.NN.)
 49 59.8
>AJ550900.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AJ005319.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AJ550912.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAGAUGCGACGAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ550907.1/56-3
CAUAAGUCUGGGCUUAGCCUACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>M83545.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
......((....(...)....)...(..(....(....)....)..))......
>M83545.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGUCGCUGAAAUGCGACGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AJ550899.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AJ005305.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGACGAGCCGCUGGGAUACGGCGAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ005312.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCUAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ241845.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUG
......((....(...)....)...(..(....(....)....)..))......
>AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
......((....(...)....)...(..(....(....)....)..))......
>AJ241831.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUG
......((....(...)....)...(..(....(....)....)..))......
>AJ241828.1/56-3
CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AF170499.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ005298.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ005302.1/281-334
AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAUUGAGACGAAACUCUUG
......((....(...)....)...(..(....(....)....)..))......
>AF170509.1/56-3
CAUAAGUCUAGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AF170504.1/284-337
GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
......((....(...)....)...(..(....(....)....)..))......
>AJ005303.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ550907.1/281-333
AAAGAGUCGCGCUUAGCGCACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
......((....(..)...)....(..(....(....)....)..))......
>AJ005320.1/281-333
GAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
......((....(..)...)....(..(....(....)....)..))......
>AJ241819.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ005318.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGUGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AJ241838.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ241830.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
......((....(..)...)....(..(....(....)....)..))......
>AJ550911.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAAACGCAACGAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ550901.1/282-334
GAAGAGUCGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC
......((....(..)...)....(..(....(....)....)..))......
>AJ241850.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAAGAGACGAAACUCUUU
......((....(..)...)....(..(....(....)....)..))......
>AJ550903.1/281-333
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
......((....(..)...)....(..(....(....)....)..))......
>AJ241847.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ005321.1/281-333
GAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
......((....(..)...)....(..(....(....)....)..))......
>AF339739.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AJ241833.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
......((....(..)...)....(..(....(....)....)..))......
>AJ241840.1/56-3
CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ241839.1/282-334
GAUGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUA
......((....(..)...)....(..(....(....)....)..))......
>AJ241841.1/57-3
CAAAAGUUUGGGCUAAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((....(...)....)....(..(....(....)....)..))......
>AJ005294.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
......((....(..)...)....(..(....(....)....)..))......
>AJ005312.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUAUGAAAUGAGACGAAACUCAUA
......((....(...)....)...(..(....(....)....)..))......
>AF170516.1/283-335
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC
......(.(....(..)...)...(..(....(....)....)..))......
>AJ550906.1/282-334
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
......(.(....(..)...)...(..(....(....)....)..))......
>AJ550909.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUUGCUGCGAUGCAACGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AF339740.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AJ005322.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGACGAGCCGUUGAGAUACGGCGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AJ550898.1/282-335
GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAAAUAAGACGAAACUCUUC
......((....(...)....)...(..(....(....)....)..))......
>AJ550910.1/282-336
GAAGAGUCCUGCGCUUAGCGCACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
......(.(....(...)....)...(..(....(....)....)..))......
>AJ005300.1/282-335
UAAGAGUCUGUGGUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ005310.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
>AJ550906.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
......((....(...)....)...(..(....(....)....)..))......
>AJ241843.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUG
......((....(...)....)...(..(....(....)....)..))......
5 (().UGA.())
Y(GA(G))
(GNRN)
(.NN.)
(R()N)
 44 53.7
>AJ550910.1/282-336
GAAGAGUCCUGCGCUUAGCGCACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
(.(...(.(....(...)....)...(..(....(....)....)..))...).)
>AJ005300.1/282-335
UAAGAGUCUGUGGUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241833.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AF170499.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ005312.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCUAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ005298.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ005303.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241828.1/56-3
CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ005322.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGACGAGCCGUUGAGAUACGGCGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241843.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241847.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ005318.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGUGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241840.1/56-3
CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ550906.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ550912.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAGAUGCGACGAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ550911.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAAACGCAACGAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AF170504.1/284-337
GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241845.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AF339739.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ550898.1/282-335
GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAAAUAAGACGAAACUCUUC
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AF170516.1/283-335
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC
(.(...(.(....(..)...)...(..(....(....)....)..))...).)
>AJ005312.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUAUGAAAUGAGACGAAACUCAUA
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241841.1/57-3
CAAAAGUUUGGGCUAAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
(.(...((....(...)....)....(..(....(....)....)..))...).)
>AJ005310.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ550900.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241838.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ550906.1/282-334
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
(.(...(.(....(..)...)...(..(....(....)....)..))...).)
>AJ550901.1/282-334
GAAGAGUCGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AJ550903.1/281-333
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AJ241831.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ005294.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AJ241830.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AF339740.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ005302.1/281-334
AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAUUGAGACGAAACUCUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ550907.1/56-3
CAUAAGUCUGGGCUUAGCCUACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ005319.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241819.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>M83545.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGUCGCUGAAAUGCGACGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ550909.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUUGCUGCGAUGCAACGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>M83545.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241839.1/282-334
GAUGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUA
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AJ550899.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ005305.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGACGAGCCGCUGGGAUACGGCGAAACUUUUG
(.(...((....(...)....)...(..(....(....)....)..))...).)
6 (().UGA.())
Y(GA(G))
(GNRN)
(.NN.)
(R()N)
((G)YN)C
 32 39.0
>AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005300.1/282-335
UAAGAGUCUGUGGUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241845.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>M83545.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005302.1/281-334
AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAUUGAGACGAAACUCUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550899.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241843.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005312.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUAUGAAAUGAGACGAAACUCAUA
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550900.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005319.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005310.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550909.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUUGCUGCGAUGCAACGAAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>M83545.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGUCGCUGAAAUGCGACGAAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241819.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005312.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCUAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005305.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGACGAGCCGCUGGGAUACGGCGAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005303.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550906.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005322.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGACGAGCCGUUGAGAUACGGCGAAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005298.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AF339740.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241847.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AF170499.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550911.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAAACGCAACGAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005318.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGUGAAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241840.1/56-3
CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241831.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AF339739.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550912.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAGAUGCGACGAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241838.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAACUUUUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241828.1/56-3
CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AF170504.1/284-337
GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
(.(...((...((...)..).)...(..(....(....)....)..))...).)

>AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241845.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005312.1/282-335
GAUGAGUCUGUGCUAAGCACACUGAUGAGUCUAUGAAAUGAGACGAAACUCAUA
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005305.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGACGAGCCGCUGGGAUACGGCGAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241847.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGAAAUGAGACGAAACUCUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AF170504.1/284-337
GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005322.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGACGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005318.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGUGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241828.1/56-3
CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241831.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUCUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005319.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AF339740.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005298.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241819.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAAAUACGGCGAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005302.1/281-334
AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAUUGAGACGAAACUCUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AF339739.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGGCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005303.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005300.1/282-335
UAAGAGUCUGUGGUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005312.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCUAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550900.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGACAAGGCGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550899.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AF170499.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241840.1/56-3
CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ005310.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241838.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550912.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAGAUGCGACGAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550911.1/56-3
CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGAAACGCAACGAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241843.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCACUGAAAUGCGGCGAAACUUUUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550909.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUUGCUGCGAUGCAACGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ550906.1/56-3
CAUAAGUCUGGGCUUAGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>M83545.1/56-3
CAUAAGUCUGGGCUAAGCCCACUGAUGAGUCGCUGAAAUGCGACGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>M83545.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
(.(...((...((...)..).)...(..(....(....)....)..))...).)
>AJ241833.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......((....(..)...)....(..(....(....)....)..))......
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AJ550903.1/281-333
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......((....(..)...)....(..(....(....)....)..))......
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AF170516.1/283-335
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUC
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......(.(....(..)...)...(..(....(....)....)..))......
(.(...(.(....(..)...)...(..(....(....)....)..))...).)
>AJ550906.1/282-334
GAAGAGUCGUGCUUAGCACACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......(.(....(..)...)...(..(....(....)....)..))......
(.(...(.(....(..)...)...(..(....(....)....)..))...).)
>AJ550898.1/282-335
GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGAAAUAAGACGAAACUCUUC
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ241839.1/282-334
GAUGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCAUA
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......((....(..)...)....(..(....(....)....)..))......
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AJ550907.1/56-3
CAUAAGUCUGGGCUUAGCCUACUGAUGAGUCGCUGCGAUGCGACGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
(.(...((....(...)....)...(..(....(....)....)..))...).)
>AJ550901.1/282-334
GAAGAGUCGCGCUAAGCGCACUGAUGAGUCUUUGAGAUAAGACGAAACUCUUC
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......((....(..)...)....(..(....(....)....)..))......
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AJ005294.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......((....(..)...)....(..(....(....)....)..))......
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AJ241841.1/57-3
CAAAAGUUUGGGCUAAAGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUUUG
......((.............)....(....................))......
......((.............)....(..(..............)..))......
......((.............)....(..(....(....)....)..))......
......((....(...)....)....(..(....(....)....)..))......
(.(...((....(...)....)....(..(....(....)....)..))...).)
>AJ241830.1/282-334
AAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......((....(..)...)....(..(....(....)....)..))......
(.(...((....(..)...)....(..(....(....)....)..))...).)
>AJ550910.1/282-336
GAAGAGUCCUGCGCUUAGCGCACUGACGAGUCUCUGAGAUGAGACGAAACUCUUC
......(.(.............)...(....................))......
......(.(.............)...(..(..............)..))......
......(.(.............)...(..(....(....)....)..))......
......(.(....(...)....)...(..(....(....)....)..))......
(.(...(.(....(...)....)...(..(....(....)....)..))...).)
>AJ005320.1/281-333
GAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUU
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......((....(..)...)....(..(....(....)....)..))......
>AF170509.1/56-3
CAUAAGUCUAGGCUUAGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
......((....(...)....)...(..(....(....)....)..))......
>AJ005321.1/281-333
GAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUG
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......((....(..)...)....(..(....(....)....)..))......
>AJ241850.1/282-334
UAAGAGUCGUGCUAAGCACACUGAUGAGUCUCUGAAAAGAGACGAAACUCUUU
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......((....(..)...)....(..(....(....)....)..))......
>AJ550907.1/281-333
AAAGAGUCGCGCUUAGCGCACUGAUGAGUCUCUGAGAUGAGACGAAACUCUUC
.....((.............)...(....................).).....
.....((.............)...(..(..............)..).).....
.....((.............)...(..(....(....)....)..).).....
......((....(..)...)....(..(....(....)....)..))......
>AJ005314.1/281-334
AAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUU
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
>AJ005322.1/281-334
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUU
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
>AJ550911.1/282-335
GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGAAAUGAGACGAAACUCUUC
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
>AF170520.1/282-335
GAUAAGUCUGUGCUUAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUUAUC
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
>AF170503.1/280-333
GAAAGGUCUGUGCUUAGCACACUGACGAGUUCCUGAAAUGGAACGAAACCUUUU
......((.............)...(....................))......
......((.............)...(..(..............)..))......
......((.............)...(..(....(....)....)..))......
>AF170523.1/55-3
CAAAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUUUG
......((............)...(....................))......
......((............)...(..(..............)..))......
>AF170519.1/55-3
CAUAAGUCUGGGCUUAGCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUAUG
......((............)...(....................))......
......((............)...(..(..............)..))......
>M33000.1/55-110
ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCUAAAGGACGAAACAGCGC
........((..............).....(...............))........
........((..............).....(..(...........)))........
>M33001.1/56-111
ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCUAAAGGACGAAACAGCGC
........((..............).....(...............))........
........((..............).....(..(...........)))........
>AJ241823.1/282-335
AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUAAAAUGAGACGAAACUCUUU
......((.............)...(....................))......
......((.............)...(..(..............)..))......
>J02386.1/42-95
UGUCCGUAGUGGAUGUGUAUCCACUCUGAUGAGUCCAAAAGGACGAAACGGAUG
......(.(..............).....(................))......
>AJ005299.1/282-335
UAAGAGUCUGUGCUAAGCACACUGAUGAAUCUCUGAAAUGAGACGAAACUCUUG
......((.............)...(....................))......
>J02439.1/42-95
UGUCCGUAGUGGAUGUGUAUCCACUCUGAUGAGUCCGAAAGGACGAAACGGAUG
......(.(..............).....(................))......
>M63666.1/246-192
CCGGUGUCUCAAGGUGCGUACCUUGACUGAUGAGUCCGAAAGGACGAAACACCAG
......(..(..............).....(................))......
>AF170503.1/55-3
CAUAAGUCUGGGCUUAGCCACUGACGAGUCGCUGGGAUACGGCGAAACUUAUG
....((..............)....(.....................))....
>D00685.1/1-46
GCCAGACGUGGACCCGGCCUGAUGAGUCCGAAAGGACGAAACAGUA
..((..............)...(.................).)...
>AJ550909.1/282-333
GAAGAGUCGCGCUUAGCGCACUGAUGAGUCUCUGAAUGAGACGAAACUCUUC
.....((.............)...(....................)).....
>AJ536617.1/1-40
GGGUGGUGUGUACCACCCCUGAUGAGUCCGAAAGGACGAA
...((.............)...(..............)).
>AJ550908.1/281-334
GAAGAGUCUGCGCUUAGCGCACUCAUGAGUCUCUGAGAUGAGACGAAACUCUUC
......((.............)......(.................))......
>AJ536620.1/1-40
GGGUGGUGUGUGCCACCCCUGAUGAGUCCGAAAGGACGAA
...((.............)...(..............)).
>AJ536620.1/206-152
CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAAAAGGGCGAAACGGUAC
......(..(..............).....(................))......
>AJ536619.1/206-152
CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGAAAGGACGAAACGGUAC
......(..(..............).....(................))......
>AJ536614.1/206-152
UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAAAAGGGCGAAACGGUAC
......(..(..............).....(................))......
>AJ536612.1/206-152
UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGAAAGGGCGAAACGGUAC
......(..(..............).....(................))......
>M17439.1/1-48
ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAGGACGAAACAGGAC
....(..(...........)...(.................)).....
>Y12833.1/339-285
CCGCUAUAUGGGGAUGUGUGUCCCUACUGACGAGUUCAAAAGAACGAAAUAGUUA
......(..(..............).....(................))......
>AJ536615.1/1-44
GGGUGGUGUGUACCAUCCCUGAUGAGUCCAAAAGGACGAAAUGG
...((.............)...(.................).).

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (().UGA.()) < 0.001 571
AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
.........1.........2.........3.........4.........5....
123456789012345678901234567890123456789012345678901234
2 Y(GA(G)) < 0.001 42.1
AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
.........1.........2.........3.........4.........5....
123456789012345678901234567890123456789012345678901234
3 (.NN.) < 0.001 2.25
AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
.........1.........2.........3.........4.........5....
123456789012345678901234567890123456789012345678901234
4 (GNRN) < 0.001 9.42
AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
.........1.........2.........3.........4.........5....
123456789012345678901234567890123456789012345678901234
5 (R()N) < 0.001 2.95
AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
.........1.........2.........3.........4.........5....
123456789012345678901234567890123456789012345678901234
6 ((G)YN)C < 0.001 4.06
AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
.........1.........2.........3.........4.........5....
123456789012345678901234567890123456789012345678901234
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 .CUGAY. < 0.001 114
AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
.........1.........2.........3.........4.........5....
123456789012345678901234567890123456789012345678901234
2 (GA()GA) < 0.001 237
AJ241831.1/281-334
GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGAAAUGAGACGAAACUCUUA
.........1.........2.........3.........4.........5....
123456789012345678901234567890123456789012345678901234
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).