D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

TPP riboswitch (THI element)   (Rfam: RF00059)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(().GA.())
(UNRN)
(()(G)R)N
94.3
92.5
90.6
(().GA.())
(UNRN)

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 97 %
(± 0.631 %)

Testing accuracy: 63.5 %
Decision tree:

5-fold cross-validation: 81.6 %
(± 5.32 %)

Testing accuracy: 69.7 %
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 78 %
(± 4.31 %)

Testing accuracy: 68.4 %
of CP000568.1/733772-733877
CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
((((((((((((((((((((...))))..)..((((((((..))))))))..)))))))).(((((((((((....))))))))))).)))))))((((...))))
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456

abstract shape: ((()())())()

Number of sequences
Structure ORBs (out of 106) (%)
1 (().GA.())
 90 84.9
>AB118748.1/319-422
UGGAGGGGUACCGGGUGUACGAGGCAGAGUCCGGUCGUUCUGAGAUUAUACUGUCAUAACUUGAUCUAGAUAAUACUAGCGAAAGGACAUGCGUGGCAUUGAUU
............((.....)..(.......))........................................................................
>AY123045.1/16666-16547
AGUCCCUGUCAGGGGAGUCUCGCCAGAGAGACUGAGAGGCUAAUAGCGAUUUUCGCGGCUUAGCGACCCUUAGAACCUGACCCAGCUGAUACUGGCGUAGGAAGACUCGUAUCUUGAUGA
..............((................)....(..........................))......................................................
>AF269819.1/1816-1718
AUUUGCUACUAGGGGAGCCAAAAGGCUGAGAUGAAUGUAUUCAGACCCUUAUAACCUGAUUUGGUUAAUACCAACGUAGGAAAGUAGUUAUUAACUAUU
.............((...........)..(...............))....................................................
>M73546.1/221-329
UUUAACCACUAGGGGUGUCCUUCAUAAGGGCUGAGAUAAAAGUGUGACUUUUAGACCCUCAUAACUUGAACAGGUUCAGACCUGCGUAGGGAAGUGGAGCGUAUUUGUG
..............((...............)...(.................))......................................................
>AL627265.1/128216-128117
CCGAACUCAACGGGGUGCCGCGCUCAUGCGCGCGCUGAGAAAAUACCCGUCGAACCUGAUCCGGAUAAUGCCGGCGAAGGGAUUUGAGGCUACCUCUCAA
..............((...................)..(....)).......................................................
>BX571861.1/7126-7022
GCCAUCUCAACGGGGUGCUGGCUGUUUAAAACAGCCUUGCUGAGAGUAAACCCGCCGAACCUGAUCCGGCUAAUACCGGCGUAGGGAUUUGAGCUGCUAACUAUU
..............(.(......................)...(.......))....................................................
>AL766847.1/94269-94358
AUAGGACAUUUGGGGUGCGUAACAGCUGAGAUUAUACCCAUUGAACUUGAUACAGUUAGUACUGUCGAAGGGAAAUGUGUGCCAUUACAA
..............((..........)..(......))....................................................
>AL939124.1/163164-163269
AUAUUCCGACAGGGGAGCGCCACAGCGCUGAGAGUGCGGCACCGGCCGCAGACCCUCCGAACCUGGCCCAGGUCAUUCUGGGUAGGGAGAUCGGUCACCACUCGAG
.............((..............)...(................).).....................................................
>AF264948.1/14680-14561
GGUUCCUGUCAGGGGAGUCUCGCCAGAGAGACUGAGAGGCUGAUAGCGAUUUUCGCGGCUUAGCGACCCUUAGAACCUGACCCAGCUGAUACUGGCGUAGGAAGACUCGUAUCUUGAUAA
..............((................)....(..........................))......................................................
>AL445066.1/239884-239777
AACUAGGCGAGGGGGAGCUCCAUAAGGGGGCUGAGAGGAUCCGGAUGGAUCGACCCCUGGAACCUGAUCCGGGUAAUACCGGCGGAGGGAAUCGUAUGAUGAAUGAGA
..............((...............)...(...............)).......................................................
>X54035.1/52-153
GAUGACCACAAGGGGAGCAUUAAAGCUGAGAGUGAGCGGUUUCGUUCUGACCCUUUGAACCUGUUAGUUAACGCUGGCGUAGGGAUGUGGCAAAUGCAAUAG
..............((..........)..(...................))...................................................
>AF070520.1/2088-2190
GCGCAUUCCGAGGGGAGCACUAGACGGUGCUGAGAUGGCGUUGAGCCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAAAGAAGGCCGCCA
..............((..............)..(................))...................................................
>BX842573.1/168419-168309
GGGUACCCACGCGGGAGCGCACGCCGAGUGCGCUGAGAGGACGGCUCGGGGCCGUCGACCGUACGAACCUGACCGGGUAAUGCCGGCGUAGGGAGUUGCAAAUGACCAUCA
..............((.................)....(.................)).....................................................
>BX927152.1/148798-148691
AUACUAGGCACGGGGUGCCAACCGGAUGGAAAAAUUCCGGAGGCUGAGAAAACACCCGUUGAACCUGCUCUAGCUCGUACUAGCGAAGGGAUGGCCUUAACGUGGCUA
..............(.(..........................)...(....))......................................................
>AF269570.1/1830-1729
UAGUAUCAUUAGGGGUGCAAUUCAAUUUGCUGAGAGAAAGUCUACUUUCAACCCUUGAACCUGUUGGUUAGCACCAGCGUAGGAAAGUGAGCAAUAUUGAUA
.............((...............)..(................))..................................................
>BX842649.1/277414-277318
ACCUGACGCUAGGGGUGUUGGUGAAUUCACCGACUGAGAAUAACCCUUUGAACCUGAUAGAGAUAAUGCUCGCGCAGGGAAGCAAGAAUAGAAAGAU
........(.(...................................).....(........................))..................
>AL596164.1/123476-123581
AAGAAAAACUAGGGGGGCCGAUUCUGGCUGAGAUAGGAAGGUAAUGCUUUCUGACCCUUUGAACCUGUUUGUUAGUGCAAGCGUAGGGAAGUGAAUGUGAAAGUGA
..............((............)....(...................))...................................................
>AL583918.1/38806-38668
ACUUCAGUACACGGGAGUCCCCAGGCAGUCCGAAUCUGCGGGGCUGAGAGUGGGCACAGCCAGAGUGACUGAACCUACCCUUACCCUCCCACACCUGAUCCGGGUCAUGCCGGCGAAGGGAGGUUCAAGAUGCCGUCAG
..............((............................)..(..........))...............................................................................
>CP000557.1/594796-594903
GACAUCCACUAGGGGGGCCUUUAGAAAGGCUGAGAUCAAAGUGUGCCUUUGAGACCCUUAGCACCUGAUCUGGGUAAUACCAGCGUAGGGAAGUGGAGAGGAGCUACA
..............((..............)...(.................).).....................................................
>Z82044.1/19193-19300
AAUAGUUACUGGGGGUGCCCGCUUUCGGGCUGAGAGAGAAGGCAAGCUUCUUAACCCUUUGGACCUGAUCUGGUUCGUACCAGCGUGGGGAAGUAGAGGAAUUGUUUU
..............((..............)..(...................)).....................................................
>BA000043.1/643262-643369
AUCAUCCACUAGGGGGGCCUUUAGAAAGGCUGAGAUCAAAGUGUGCCUUUGAGACCCUUAGCACCUGAUCUGGGUAAUGCCAGCGUAGGGAAGUGGAGGAGCAGCACA
..............((..............)...(.................))......................................................
>AJ002571.1/43977-43865
GGAAAGCACUAGGGGUGCUGUUUUGGCUGAGAUAAAGCGCGGAAGAAACGCGCUUUGAUCCCUUAUGACCCGAUCUGGAUAAUACCAGCGUGGGGAAGUGCAGGUUGACCGAA
...............((............)...(.....................).).......................................................
>M16495.1/2120-2233
GCCAUCUUGUCGGAGUGCCAACCGUCGAACGACGCGAGGCUGAGACCGUUAAUUCGGGAUCCGUGGAACCUGAUCAGGCUAGCACCUGCGAAGGGAAACAAGGGUAACUUGCGG
....................((............).....(....................))...................................................
>AF109218.1/4405-4502
UAAAAUUGCUAGGGGCGCCUUUUGGCUGAGAUAGUUUGACUAGACCCUUAUAACCUGAUUUGGUUCGUACCAACGUAGGAAAGUAGUAUAUUCAGAAU
.............((...........)..(.............)).....................................................
>BX248354.1/27456-27566
AGUGUCCCCCGCGGGCGCCCGAGCACGGGCUGAGAUUGCGCUGAUGCUGUGCAAGCACCGUUUGAACCUGUCUGGUUAACACCAGCGAAGGAAGAGAGGAGCGCGAGCCUA
...............((............).....(.................))........................................................
>AF004408.1/427-558
ACCAUUCACCAGGGGUGCCCCGGCAAGGGGCUGAGAUUCUGCUGAACAAUACGGCUUUGCCUGUUGUGGCGCGGUGACCCGUUGAACCUGAUCCAGUUCAUACUGGCGUAGGGACGGUGCGGACCUGCGGCU
.......................((...............)....(....................))................................................................
>AACY022101973.1/389-487
UAUAAGUCCAAGGGGUGCCAAUUGGCUGAGAUGGUUUUAACCAAUCCCUUUGAACCUGAUCCGGUUAAUACCGGCGUAGGAAUGGAUUUUCUCUACAGC
.............((...........)..(...............))....................................................
>AF104225.1/570-680
CGUUACCACAGGGGGGGCUUCUUAGCUGAGAUUGAGUCCACGUGUUUUUGGAUUCUGACCCUUUGAACCUGUUCGUUAAUACGAGCGUAGGGAUUGUGGCGAUUGCAUUUC
...............((...........)...(......................).).....................................................
>AF217503.1/595-688
ACAUGGCAUCGAUGGACUGGGUUCGUUCUGAGAUUAUACGGCUAAAACUUGAUCUGGAUAAUACCAGCGAAAAGGGUCAUGCCUUCUCUCGUUC
...............((............)...(..........................))................................
>AP006627.1/829775-829676
AAGAACCACUAGGGGAGCCAUCUGGCUGAGAAAAGCGCUGCUUUGACCCUUUGAACCUGAUCUGGCUUGUACCAGCGUAGGGAAGUGGAGAACAAUUGCU
.............((...........)..(...............)).....................................................
>U64312.1/2271-2374
UAGUUCCACUAGGGGUGUCAGUUUGUCUGACUGAGAGAGGGAAGCCUCAACUCUUAAAACCUGAUCUAGCUUGUACUAGCGUAGGGAAGUGGUGGCACAUUCUA
..............((...............)..(..............)).....................................................
>AAEK01000033.1/47712-47817
UUUAUCCACUAGGGGGGCCUAUUAUAGGCUGAGAUCAAAUGGGAAUUUGAGACUCUUAGUACCUGAUCUGGUUAAUGCCAGCGUAGGGAAGUGGAAAAGACAUUGC
.............((..............)..(..................)).....................................................
>AP006716.1/943397-943499
UAAUGCUACUAGGGGAGCCAUAGUAAAUGGCUGAGAUGAUUAAUUCAGACCCUUAUAACCUGAUUUGGUUAGUACCAACGUAGGAAAGUAGUUAUGUAAAUGU
.............(.(...............)..(..............))....................................................
>CP000510.1/2895423-2895324
CAAAUAUAGUCGGGGGGCCUGAAGGCUGAGAUCGCAUAGUGCGAAACCCGUUGAACCUGAUUCAGUUAAUACUGGCGUAGGGAACUAUAAGUCUUGUUUU
.............((...........)..(...............)).....................................................
>ABCF01000004.1/41916-42024
CAAAACCACUGGGGGAGCCUUUUAAAGGCUGAGAUUAAAGUGUACUACUUUAAGACCCUUUGAACCUGAUCUAGUUCAUACUAGCGGAGGGAAGUGUAGUCUGAAUGAU
.............((...............)...(.................).)......................................................
>AE017180.1/640928-640827
AUAGUCUGCUGGGGGAGUUCUUGGGAACUGAGACGGGCAACGCCCGAACCCUUUGAACCUGAUCCGGUUUAUACCGGCGUAGGGAAGCGGCCAGAAACAAUC
.............((.............)..(...............)).....................................................
>CP000002.3/1271349-1271457
GUUUUCCACUAGGGGAGUCCUUGAUAAGGGCUGAGAUAAAAGUUUGACUUUUAGACCCUCAUAACCUGAACAGGUUCAAACCUGCGUAGGGAAGUGGCACGGUAUUUGA
..............((...............)...(.................))......................................................
>BX248356.1/232868-232999
UUUAUAAAUCACGGGUGCUGGACGGCAUACGUUUGCCACAAAGCUGAGACAGGGCGAGAAGACGUGCACGUCCCUGAACCGUUGAACCUGAUCCGGGUAAUACCGGCGAUAGGAAGAAUAAUGAACCGAUCG
...............((..........................).....(.........................)).......................................................
>AARF01000324.1/6363-6261
UUUUUUCACUAGGGGCGCCCGUACGGGCUGAGACAGAAUGGUUUCUGGACCCUUUGAACCUGAUCUGGAUUAUACCAGCGUAGGAAAGUGGGAAUGCAUGAAU
.............((.............)..(................)).....................................................
>AL596168.1/251336-251226
CGUUACCACAGGGGGGGCUUCUUAGCUGAGAUUGAAUCCGCGUGUUUUUGGAUUCUGACCCUUUGAACCUGUUCGUUAAUACGAGCGUAGGGAUUGUGGCGAUUGCAUUUC
...............((...........)...(......................).).....................................................
>AY316746.1/2276-2378
CUCCAUUCCGAGGGGAGCGCCGGGCGGCGCUGAGACGGCGGUGAGCCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAACGAGGCUGCCCU
..............((..............)..(................))...................................................
>AP008934.1/816596-816694
AAACGCUACUAGGGGAGCCAGUUGGCUGAGAUGAUUAAAUUCAGACCCUUACAACCUGAUUUGGUUAAUACCAACGUAGGAAAGUAGUUUAAUCUAAAG
..............((..........)..(...............))....................................................
>AL445064.1/126097-125991
CUGGUGUGGUGGGGGAGCUCCAUAAGGGGCUGAGAGGAUCCGGAUGGAUCGAUCCCUGGAACCUGAUCCGGGUAAUACCGGCGGAGGGAAAUUAUGGAAAAAAAUAG
..............(.(................................)..(......))..............................................
>U81371.1/247-152
AAAAAACUAUUAGGGUGCCCGUAGUAUGGGUUUAGAAAAAACCUUUUGGACUUGAUAUGGAUCAUACCAGCUUAGGAAAGUAGUGUAAUUUUUUCC
..((.........................................).....(.................).)........................
>CP000114.1/913402-913491
AUAGGACAUUUGGGGUGCGUAACAGCUGAGAUUAUACCCAUUGAACUUGAUGCAGUUAGUACUGUCGAAGGGAAAUGUGUGCCAUUACAA
.............((...........)..(.....)).....................................................
>BX571860.1/177712-177587
ACUUUCUUGUCGGAGUGCCUAGCGUAAGCUGUUUUAUCGCAGCAUACACAGGCUGAGACCGUUAAUUCGGGAUCCGCGGAACCUGAUCGGGUUAAUACCCGCGAAGGGAACAAGAGUAAUCAACCG
.............(.(.....................................)..(..............)).....................................................
>AL672115.1/15647-15763
CGCAUUCACCAGGGGAGUCCCGGCAAGGGGCUGAGAUACUGCUGGCUUUCGCGGCGCAGUGACCCGUUGAACCUGAUCCAGUUCAUACUGGCGUAGGGACGGUGCAAGCGCUUUGCG
..............((...............).....(.....................).).......................................................
>AE008691.1/2399659-2399556
UAUGUCCGCUGGGGGAGCCUGAAAAGGCUGAGACGGCAGAAAUGCCGAACCCUUGGAACCUGAUGAGGGUAAUGCCUCCGUAGGGAAUGCGGGCUCAAAAGGCA
.............((.............)..(................))......................................................
>AL939111.1/162719-162830
CAAGGCACUCGCGGGAGCCCGGACGCACCGGGCUGAGAGGGAGGCUGGCGGCCUCCGACCGUACGAACCUGAUCCGGGUCAUGCCGGCGAAGGGAGGGGCUGGACGCCCAUG
..............((.................)....(.................))......................................................
>AALZ01000004.1/372786-372686
AUCUAUCCGUCGGGGUGCCCUAGGGGGCUGAGAGGUGCGUGCACCGACCCGUCGAACCUGAUCCGGGCAAUACCGGCGUAGGGAACGGGUAUCUUUGUGCA
.............((.............)..(...............))....................................................
>CP000764.1/2008349-2008244
UCUAUCCACUAGGGGUGCCGAUAUUGGCUGAGAUUAAAGUUUAUCUUUGAGACCCUUAGUACCUGAUCUGGUUCGUACCAGCGUAGGGAAGUGGAAAUGACAAAAU
.............((.............)..(...................)).....................................................
>CP000716.1/1578877-1578987
AGAAAACCCGAGGGGAGCUCCAUAAGCCGGGGCUGAGAGGAAGGCGGAAGUCUUCGACCCUUAGAACCUGAACCGGGUAAUACCGGCGGAGGGACGGGUAGAGAAAAUUUC
..............((.................)...(.................))......................................................
>AL766847.1/75304-75206
AAAUACACAAGGGAGUGCCUUGAGCUGAGAUUGCAGAUAUGCAAAAUCCUCUAACCUGAUCUCGUUAGGACGAGCGUAGGAAUUGUGGUUUGAAUUGGU
............((...........)..(..................))..................................................
>AAMD01000032.1/31845-31737
CGUUGUCGCUAGGGGUGCCCCCGUCAGGGGCUGAGAUGGCCGUGGACCGGCCAGACCCUUUGAACCUGAACCGGGUCAUACCGGCGGAGGGAAGCGGCGGGCGCUCCAA
..............((...............)...(.................))......................................................
>CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
..............((.............)..(................)..).....................................................
>CP000489.1/34903-34800
CUCAUACACUUGGGGAGCCUCGCACGAGGCUGAGAGGUGCCGGGCACCGACCCAUCGAACCUGAUCCGGGUCAUGCCGGCGUAGGGAAGGGUAGAGUGAAGCGG
..............((..............)..(.................))...................................................
>BX248356.1/234808-234920
ACGAGAUGCCCGGGUGCCAUGUGCUUGCUGUACGUGGCUGAGACGGCUGUUUGGCCGAACCGUAGAACCUGAUCUGGGUAAUACCAGCGAUAGGAAGACUUCAUACUGUGACU
..............(.(...................).....(..............))......................................................
>CP000918.1/2145369-2145290
UACAGUCUGAGAGGAAGUGUUAAACUUCGACCGCACCUGAUCUGGGUAAUGCCAGCGGAGGGAACGAUACUUAGUCUAAU
........((...........................)...(............))........................
>AL009126.3/3179105-3179206
GAUGACCACAAGGGGAGCAUUAAAGCUGAGAGUGAGCGGUUUCGUUCUGACCCUUUGAACCUGUUAGUUAACGCUGGCGUAGGGAUGUGGCAAAGUCAAAUG
..............((..........)...(..................))...................................................
>CP000771.1/338574-338685
UAAUGCCUGGAGGGGAGCUCCAAAAUGCGGGGCUGAGAGGAAGGAGUCAAUCCUUCGACCCUUCGAACCUGAUCCGGGUAAUACCGGCGGAGGGACCAGGUGACUCAAAAAU
...............((...............).....(.................))......................................................
>AM039952.1/4100743-4100646
CCGCCGAAGUGGGGGUACCGCAGCGUGCUGCGGUUGAGAUAGUCCCUUCGAACCUGAUCCGGCUGAUACCGGCGUAGGGAAGCUUCGUCAGAUGCGAU
...............((................)...(..........))................................................
>AL009126.3/1242262-1242370
UUUAACCACUAGGGGUGUCCUUCAUAAGGGCUGAGAUAAAAGUGUGACUUUUAGACCCUCAUAACUUGAACAGGUUCAGACCUGCGUAGGGAAGUGGAGCGGUAUUUGU
..............((...............)...(.................))......................................................
>CP000050.1/1019813-1019911
CCGCCGAAGUGGGGGUACCACAGCACUGCUGCGGUUGAGAUAGUCCCUUCGAACCUGAUCCGGCUCAUACCGGCGUAGGGAAGCUUCGUUAGAUGCGCU
..............(.(.................)...(.....)).....................................................
>AE008691.1/2140374-2140272
UCAAAGUGCUAGGGGAGCCAGAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUACGGAAU
.............(.(............)..(.................))....................................................
>BX548175.1/178356-178459
GCAAAACACUAGGGGUGCCAUUCAGCAAUCGCUGAGUGGCUGAGAUCACACCCUCCGAACCUGAUACGGGUUGUGCCGGCGCAGGGAAGUGAAAUGACGUGAUC
..............((........................)..(....))......................................................
>CP003056.1/3348160-3348049
UCAAACUACUAGGGGUGCCCGGAUUUGGCGGGCUGAGAGAAAAACCGGCGUUUUUCAACCCUUUGGACCUGAUCCGGAUCAUACCGGCGUAGGAAAGUAGGAAUUUGUAAAA
...............((...............)....(..................))......................................................
>AE004439.1/444121-444213
GACUCUUAGUCGGGGUGCUAUUGCGUUAGCUGAGAUGAUACCCGUGAACCUGAUGCAGUUAAUACUGACGUAGGAAACUAGCAGUCAAUAUUG
..............((..............)..(......))...................................................
>AE007869.2/2541937-2541826
GCCAUUCACCAGGGGUGUCCCGUCAAGGGGCUGAGAUUCUGCUUUCAUGCGCAGUGACCCGUUGAACCUGAUCCAGUUCAUACUGGCGUAGGGACGGUGCAAAGACCUGAUG
..............((...............)...(..................).).......................................................
>AL935263.2/202700-202607
UCAUAGCAACUGGGGUGCCAUCACGGCUGAGAUAAUACCCAUUGAACCUGAAUCUGGACAAUGCCAGCGCAGGGAGCAAUGCUUUUAUUUGGGG
.......((.................................)..(...........................))...................
>AL583918.1/33385-33496
AAAAAACCACGCGGGAGCACACACCAAGUGCGCUGAGAGGACGGAUCGGGGCCGUCGACCGUAUGAACCUGACCGGGUAAUGCCGGCGUAGGGAGAUGAAUAAUGACUGAAA
.......((............................)...(................................))....................................
>CP000919.1/639572-639660
UAAAGACAUUUGGGGUGCUUUAGGCUGAGAUGAUACCCAUUGAACCUGAUACAGUUAAGACUGGCGAAGGGAAAUGUGAAAUGUUUUUU
..........((..........................)....(..........................)).................
>CP000425.1/327513-327414
UAUUUGCACAAUGGGUCUAUUGACAAGUCUGUCAGUAGCGAGAAAUACCAUCUGACCUGAUCUGGGUAAUGCCAGCGUAGGAAUGUGUUAAGACAAUCGU
...........((....................................).....(........................))..................
>AE008691.1/1524796-1524694
CUCAAGUGCUAGGGGAGCCAAAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUACGAAAU
.............(.(............)..(.................))....................................................
>AB087258.1/15478-15568
CCGACUUAGUCGGGGUGCUGAUAACAGCUGAGAUAAUACCCGUGAACCUGAUACAGUUAAUACUGACGUAGGAAACUAAUGGUCUUACUCC
.............((.............)..(.....))....................................................
>AL935263.2/99249-99354
UUUAAACACUAGGGGUGUCCAAAAAUGGGCUGAGAUGGUGCUGUAAGUACCGAUCCCUUUGAACCUGUAAGCUCAAACUUGCGUAGGAAAGUGUCACAGCUAAUGU
..............((..............)..(...................))...................................................
>AL009126.3/1607367-1607468
GAUUCAUCCUAGGGGUGCUUUGCGAAGCUGAGAGAGACUUUGUCUCAACCCUUUUGACCUGAUCUGGAUCAUGCCAGCGGAGGGAAGCGGUGAAAAGCGGAG
.............((.............)..(...............)).....................................................
>AALV01000001.1/1015631-1015532
UAAGAUACCUCGGGGGGCCUGACAGGCUGAGAUGUGCGCGCACGGACCCGUUGAACCUGAACCGGUUAACACCGGCGGAGGGAAGGUCUGGAUACACCUC
.............((............)..(..............)).....................................................
>AE007317.1/646024-645926
AACAACCACUAGGGGUGCGUAAAGCUGAGAUUAACGACUGUUAGAUCCCUCUGACUCAAUCUAGGUAAUGCUAGCUGAUGGAAGUGGAAAUGAUAAUGG
..............((.........)..(.................))...................................................
>CP000936.1/749906-749994
UAGAGACAUUUGGGGUGCUUUAAGCUGAGAUGAUACCCAUUGAACCUGAUACAGUUAAGACUGGCGAAGGGAAAUGUGAAACGUUUUUU
..............((.........)..(...........).)..............................................
>AE017221.1/302202-302311
GGGGCAGGCUAGGGGUGCCCGAAUGGAAGGGCUGAGAGCUGGGUUUCUCCCAGCAACCCUUGGAACCUGAUCCGGGUAAUGCCGGCGGAGGGAAGCCUAUGCGGAAGACC
..............((................)...(.................))......................................................
>CP000058.1/628566-628670
GCGUUCUUGUCGGGGUGCCUUGCUGUGAGGCUGAGAUCGGUUAAACCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUUCUCGUCUC
.............(.(...............)..(...............)).....................................................
>CT573326.1/5282526-5282420
AUGUUCUUGUCGGGGUGCCUUGAAGCAAAGGCUGAGAUCGCAAAGUUGCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUGCUCUCAUU
..............((................)..(.................))....................................................
>AE008691.1/1681524-1681422
CUCAAGUGCUAGGGGAGCCAGAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUAUUGAGU
.............((.............)..(.................))....................................................
>CP000141.1/198028-198135
AACGGCCACUGGGGGUGCCGGUCAAAACCGGCUGAGAGGGAGAGUUCUCCCAACCCUUUGAACCUGAUCCGGGUAAUACCGGCGUAGGGAAAGUGGGGUAACUGGAAG
..............((................)..(................))......................................................
>BX548174.1/1543261-1543163
AAAUAUAACUAGGGGUGCUAAGUCAAUUACUUAGCUGAGAUCAUACCCUUCGAACCUGAAACAGUUAAAACUGACGCAGGAAAGUUUCAAUUUGAUCGA
..............(.(.................)...(.....)).....................................................
>AL591688.1/3532865-3532978
GCUGCUCUAACGGGGUGCCCUGGCCGGCUUUGCGACCAUGGCUGAGAGGCUUCGAGCCAACCCGCGGAACCUGAUCCGGCUCAUACCGGCGGAGGGAUUAGAAGCGAUCGGACC
...............((........................)...(............))......................................................
>CP000830.1/937748-937645
CAACAACCGUUGGGGUGCCCGAUUCAGGGCUGAGAGGCGCACUGUGCCGACCCAUGGAACCUGAUCCGGGCAAUACCGGCGUAGGGAACGGUCAUCGUGGCAAU
.............((...............)..(...............)).....................................................
>CP000076.1/627657-627761
CGGUUCUUGUCGGGGUGCCUUGCUAUGAGGCUGAGAUCGGAUAAUCCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUUCUCGUCAC
............(..(...............)..(................))....................................................
>AE007870.2/312774-312876
AGCUCUUCCGAGGGGAGCACCAGACGGUGCUGAGAUGGUGGUGAACCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAACUGUCGUGCGCU
.............(.(..............)..(................))...................................................
>CP001488.1/228163-228057
CAAAAUUCGUUGGGGUGCCUUGAAAGAGGCUGAGAGACGCAUUCUCACGUCAACCCAUUGAACCUGAUCCGGGUAAUACCUGCGUAGGGAACGGAGUUUGGCGCGUC
...........((..........................................)......(........................))..................
2 (().GA.())
(UNRN)
 71 67.0
>Z82044.1/19193-19300
AAUAGUUACUGGGGGUGCCCGCUUUCGGGCUGAGAGAGAAGGCAAGCUUCUUAACCCUUUGGACCUGAUCUGGUUCGUACCAGCGUGGGGAAGUAGAGGAAUUGUUUU
..............((..............)..(...................))..................(....).............................
>AP006627.1/829775-829676
AAGAACCACUAGGGGAGCCAUCUGGCUGAGAAAAGCGCUGCUUUGACCCUUUGAACCUGAUCUGGCUUGUACCAGCGUAGGGAAGUGGAGAACAAUUGCU
.............((...........)..(...............))..................(....).............................
>AF004408.1/427-558
ACCAUUCACCAGGGGUGCCCCGGCAAGGGGCUGAGAUUCUGCUGAACAAUACGGCUUUGCCUGUUGUGGCGCGGUGACCCGUUGAACCUGAUCCAGUUCAUACUGGCGUAGGGACGGUGCGGACCUGCGGCU
.......................((...............)....(....................))............................(....)..............................
>AL445066.1/239884-239777
AACUAGGCGAGGGGGAGCUCCAUAAGGGGGCUGAGAGGAUCCGGAUGGAUCGACCCCUGGAACCUGAUCCGGGUAAUACCGGCGGAGGGAAUCGUAUGAUGAAUGAGA
..............((...............)...(...............))...................(....)..............................
>AY123045.1/16666-16547
AGUCCCUGUCAGGGGAGUCUCGCCAGAGAGACUGAGAGGCUAAUAGCGAUUUUCGCGGCUUAGCGACCCUUAGAACCUGACCCAGCUGAUACUGGCGUAGGAAGACUCGUAUCUUGAUGA
..............((................)....(..........................))...................(....).............................
>BA000043.1/643262-643369
AUCAUCCACUAGGGGGGCCUUUAGAAAGGCUGAGAUCAAAGUGUGCCUUUGAGACCCUUAGCACCUGAUCUGGGUAAUGCCAGCGUAGGGAAGUGGAGGAGCAGCACA
..............((..............)...(.................))...................(....).............................
>AL596164.1/123476-123581
AAGAAAAACUAGGGGGGCCGAUUCUGGCUGAGAUAGGAAGGUAAUGCUUUCUGACCCUUUGAACCUGUUUGUUAGUGCAAGCGUAGGGAAGUGAAUGUGAAAGUGA
..............((............)....(...................))................(....).............................
>AF070520.1/2088-2190
GCGCAUUCCGAGGGGAGCACUAGACGGUGCUGAGAUGGCGUUGAGCCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAAAGAAGGCCGCCA
..............((..............)..(................))................(....).............................
>AP006716.1/943397-943499
UAAUGCUACUAGGGGAGCCAUAGUAAAUGGCUGAGAUGAUUAAUUCAGACCCUUAUAACCUGAUUUGGUUAGUACCAACGUAGGAAAGUAGUUAUGUAAAUGU
.............(.(...............)..(..............)).................(....).............................
>AF269819.1/1816-1718
AUUUGCUACUAGGGGAGCCAAAAGGCUGAGAUGAAUGUAUUCAGACCCUUAUAACCUGAUUUGGUUAAUACCAACGUAGGAAAGUAGUUAUUAACUAUU
.............((...........)..(...............)).................(....).............................
>AAEK01000033.1/47712-47817
UUUAUCCACUAGGGGGGCCUAUUAUAGGCUGAGAUCAAAUGGGAAUUUGAGACUCUUAGUACCUGAUCUGGUUAAUGCCAGCGUAGGGAAGUGGAAAAGACAUUGC
.............((..............)..(..................))..................(....).............................
>CP000557.1/594796-594903
GACAUCCACUAGGGGGGCCUUUAGAAAGGCUGAGAUCAAAGUGUGCCUUUGAGACCCUUAGCACCUGAUCUGGGUAAUACCAGCGUAGGGAAGUGGAGAGGAGCUACA
..............((..............)...(.................).)..................(....).............................
>CP000510.1/2895423-2895324
CAAAUAUAGUCGGGGGGCCUGAAGGCUGAGAUCGCAUAGUGCGAAACCCGUUGAACCUGAUUCAGUUAAUACUGGCGUAGGGAACUAUAAGUCUUGUUUU
.............((...........)..(...............))..................(....).............................
>AE017180.1/640928-640827
AUAGUCUGCUGGGGGAGUUCUUGGGAACUGAGACGGGCAACGCCCGAACCCUUUGAACCUGAUCCGGUUUAUACCGGCGUAGGGAAGCGGCCAGAAACAAUC
.............((.............)..(...............))..................(....).............................
>AJ002571.1/43977-43865
GGAAAGCACUAGGGGUGCUGUUUUGGCUGAGAUAAAGCGCGGAAGAAACGCGCUUUGAUCCCUUAUGACCCGAUCUGGAUAAUACCAGCGUGGGGAAGUGCAGGUUGACCGAA
...............((............)...(.....................).)....................(....).............................
>AF104225.1/570-680
CGUUACCACAGGGGGGGCUUCUUAGCUGAGAUUGAGUCCACGUGUUUUUGGAUUCUGACCCUUUGAACCUGUUCGUUAAUACGAGCGUAGGGAUUGUGGCGAUUGCAUUUC
...............((...........)...(......................).).................(....)..............................
>ABCF01000004.1/41916-42024
CAAAACCACUGGGGGAGCCUUUUAAAGGCUGAGAUUAAAGUGUACUACUUUAAGACCCUUUGAACCUGAUCUAGUUCAUACUAGCGGAGGGAAGUGUAGUCUGAAUGAU
.............((...............)...(.................).)...................(....).............................
>BX842573.1/168419-168309
GGGUACCCACGCGGGAGCGCACGCCGAGUGCGCUGAGAGGACGGCUCGGGGCCGUCGACCGUACGAACCUGACCGGGUAAUGCCGGCGUAGGGAGUUGCAAAUGACCAUCA
..............((.................)....(.................))..................(....).............................
>AL939124.1/163164-163269
AUAUUCCGACAGGGGAGCGCCACAGCGCUGAGAGUGCGGCACCGGCCGCAGACCCUCCGAACCUGGCCCAGGUCAUUCUGGGUAGGGAGAUCGGUCACCACUCGAG
.............((..............)...(................).)..................(....).............................
>AF264948.1/14680-14561
GGUUCCUGUCAGGGGAGUCUCGCCAGAGAGACUGAGAGGCUGAUAGCGAUUUUCGCGGCUUAGCGACCCUUAGAACCUGACCCAGCUGAUACUGGCGUAGGAAGACUCGUAUCUUGAUAA
..............((................)....(..........................))...................(....).............................
>AARF01000324.1/6363-6261
UUUUUUCACUAGGGGCGCCCGUACGGGCUGAGACAGAAUGGUUUCUGGACCCUUUGAACCUGAUCUGGAUUAUACCAGCGUAGGAAAGUGGGAAUGCAUGAAU
.............((.............)..(................))..................(....).............................
>M73546.1/221-329
UUUAACCACUAGGGGUGUCCUUCAUAAGGGCUGAGAUAAAAGUGUGACUUUUAGACCCUCAUAACUUGAACAGGUUCAGACCUGCGUAGGGAAGUGGAGCGUAUUUGUG
..............((...............)...(.................))...................(....).............................
>CP000002.3/1271349-1271457
GUUUUCCACUAGGGGAGUCCUUGAUAAGGGCUGAGAUAAAAGUUUGACUUUUAGACCCUCAUAACCUGAACAGGUUCAAACCUGCGUAGGGAAGUGGCACGGUAUUUGA
..............((...............)...(.................))...................(....).............................
>AY316746.1/2276-2378
CUCCAUUCCGAGGGGAGCGCCGGGCGGCGCUGAGACGGCGGUGAGCCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAACGAGGCUGCCCU
..............((..............)..(................))................(....).............................
>AP008934.1/816596-816694
AAACGCUACUAGGGGAGCCAGUUGGCUGAGAUGAUUAAAUUCAGACCCUUACAACCUGAUUUGGUUAAUACCAACGUAGGAAAGUAGUUUAAUCUAAAG
..............((..........)..(...............)).................(....).............................
>AACY022101973.1/389-487
UAUAAGUCCAAGGGGUGCCAAUUGGCUGAGAUGGUUUUAACCAAUCCCUUUGAACCUGAUCCGGUUAAUACCGGCGUAGGAAUGGAUUUUCUCUACAGC
.............((...........)..(...............)).................(....).............................
>AL445064.1/126097-125991
CUGGUGUGGUGGGGGAGCUCCAUAAGGGGCUGAGAGGAUCCGGAUGGAUCGAUCCCUGGAACCUGAUCCGGGUAAUACCGGCGGAGGGAAAUUAUGGAAAAAAAUAG
..............(.(................................)..(......))..........(....)..............................
>AL766847.1/75304-75206
AAAUACACAAGGGAGUGCCUUGAGCUGAGAUUGCAGAUAUGCAAAAUCCUCUAACCUGAUCUCGUUAGGACGAGCGUAGGAAUUGUGGUUUGAAUUGGU
............((...........)..(..................))...............(....).............................
>AL596168.1/251336-251226
CGUUACCACAGGGGGGGCUUCUUAGCUGAGAUUGAAUCCGCGUGUUUUUGGAUUCUGACCCUUUGAACCUGUUCGUUAAUACGAGCGUAGGGAUUGUGGCGAUUGCAUUUC
...............((...........)...(......................).).................(....)..............................
>AE008691.1/2399659-2399556
UAUGUCCGCUGGGGGAGCCUGAAAAGGCUGAGACGGCAGAAAUGCCGAACCCUUGGAACCUGAUGAGGGUAAUGCCUCCGUAGGGAAUGCGGGCUCAAAAGGCA
.............((.............)..(................))..................(....)..............................
>CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
..............((.............)..(................)..)..................(....).............................
>CP000764.1/2008349-2008244
UCUAUCCACUAGGGGUGCCGAUAUUGGCUGAGAUUAAAGUUUAUCUUUGAGACCCUUAGUACCUGAUCUGGUUCGUACCAGCGUAGGGAAGUGGAAAUGACAAAAU
.............((.............)..(...................))..................(....).............................
>AF109218.1/4405-4502
UAAAAUUGCUAGGGGCGCCUUUUGGCUGAGAUAGUUUGACUAGACCCUUAUAACCUGAUUUGGUUCGUACCAACGUAGGAAAGUAGUAUAUUCAGAAU
.............((...........)..(.............))..................(....).............................
>U64312.1/2271-2374
UAGUUCCACUAGGGGUGUCAGUUUGUCUGACUGAGAGAGGGAAGCCUCAACUCUUAAAACCUGAUCUAGCUUGUACUAGCGUAGGGAAGUGGUGGCACAUUCUA
..............((...............)..(..............))..................(....).............................
>AL939111.1/162719-162830
CAAGGCACUCGCGGGAGCCCGGACGCACCGGGCUGAGAGGGAGGCUGGCGGCCUCCGACCGUACGAACCUGAUCCGGGUCAUGCCGGCGAAGGGAGGGGCUGGACGCCCAUG
..............((.................)....(.................))...................(....).............................
>CP000489.1/34903-34800
CUCAUACACUUGGGGAGCCUCGCACGAGGCUGAGAGGUGCCGGGCACCGACCCAUCGAACCUGAUCCGGGUCAUGCCGGCGUAGGGAAGGGUAGAGUGAAGCGG
..............((..............)..(.................))................(....).............................
>AL672115.1/15647-15763
CGCAUUCACCAGGGGAGUCCCGGCAAGGGGCUGAGAUACUGCUGGCUUUCGCGGCGCAGUGACCCGUUGAACCUGAUCCAGUUCAUACUGGCGUAGGGACGGUGCAAGCGCUUUGCG
..............((...............).....(.....................).)...................(....)..............................
>CP000716.1/1578877-1578987
AGAAAACCCGAGGGGAGCUCCAUAAGCCGGGGCUGAGAGGAAGGCGGAAGUCUUCGACCCUUAGAACCUGAACCGGGUAAUACCGGCGGAGGGACGGGUAGAGAAAAUUUC
..............((.................)...(.................))...................(....).............................
>CP000050.1/1019813-1019911
CCGCCGAAGUGGGGGUACCACAGCACUGCUGCGGUUGAGAUAGUCCCUUCGAACCUGAUCCGGCUCAUACCGGCGUAGGGAAGCUUCGUUAGAUGCGCU
..............(.(.................)...(.....)).................(....)..............................
>AM039952.1/4100743-4100646
CCGCCGAAGUGGGGGUACCGCAGCGUGCUGCGGUUGAGAUAGUCCCUUCGAACCUGAUCCGGCUGAUACCGGCGUAGGGAAGCUUCGUCAGAUGCGAU
...............((................)...(..........))............(....)..............................
>AL009126.3/3179105-3179206
GAUGACCACAAGGGGAGCAUUAAAGCUGAGAGUGAGCGGUUUCGUUCUGACCCUUUGAACCUGUUAGUUAACGCUGGCGUAGGGAUGUGGCAAAGUCAAAUG
..............((..........)...(..................))................(....).............................
>AAMD01000032.1/31845-31737
CGUUGUCGCUAGGGGUGCCCCCGUCAGGGGCUGAGAUGGCCGUGGACCGGCCAGACCCUUUGAACCUGAACCGGGUCAUACCGGCGGAGGGAAGCGGCGGGCGCUCCAA
..............((...............)...(.................))...................(....).............................
>AE004439.1/444121-444213
GACUCUUAGUCGGGGUGCUAUUGCGUUAGCUGAGAUGAUACCCGUGAACCUGAUGCAGUUAAUACUGACGUAGGAAACUAGCAGUCAAUAUUG
..............((..............)..(......))................(....).............................
>BX248356.1/232868-232999
UUUAUAAAUCACGGGUGCUGGACGGCAUACGUUUGCCACAAAGCUGAGACAGGGCGAGAAGACGUGCACGUCCCUGAACCGUUGAACCUGAUCCGGGUAAUACCGGCGAUAGGAAGAAUAAUGAACCGAUCG
...............((..........................).....(.........................))...................(....)..............................
>AF269570.1/1830-1729
UAGUAUCAUUAGGGGUGCAAUUCAAUUUGCUGAGAGAAAGUCUACUUUCAACCCUUGAACCUGUUGGUUAGCACCAGCGUAGGAAAGUGAGCAAUAUUGAUA
.............((...............)..(................))...............(....).............................
>BX248356.1/234808-234920
ACGAGAUGCCCGGGUGCCAUGUGCUUGCUGUACGUGGCUGAGACGGCUGUUUGGCCGAACCGUAGAACCUGAUCUGGGUAAUACCAGCGAUAGGAAGACUUCAUACUGUGACU
..............(.(...................).....(..............))..................(....)..............................
>AE008691.1/2140374-2140272
UCAAAGUGCUAGGGGAGCCAGAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUACGGAAU
.............(.(............)..(.................)).................(....).............................
>AB087258.1/15478-15568
CCGACUUAGUCGGGGUGCUGAUAACAGCUGAGAUAAUACCCGUGAACCUGAUACAGUUAAUACUGACGUAGGAAACUAAUGGUCUUACUCC
.............((.............)..(.....)).................(....).............................
>X54035.1/52-153
GAUGACCACAAGGGGAGCAUUAAAGCUGAGAGUGAGCGGUUUCGUUCUGACCCUUUGAACCUGUUAGUUAACGCUGGCGUAGGGAUGUGGCAAAUGCAAUAG
..............((..........)..(...................))................(....).............................
>CP000771.1/338574-338685
UAAUGCCUGGAGGGGAGCUCCAAAAUGCGGGGCUGAGAGGAAGGAGUCAAUCCUUCGACCCUUCGAACCUGAUCCGGGUAAUACCGGCGGAGGGACCAGGUGACUCAAAAAU
...............((...............).....(.................))...................(....).............................
>AL009126.3/1242262-1242370
UUUAACCACUAGGGGUGUCCUUCAUAAGGGCUGAGAUAAAAGUGUGACUUUUAGACCCUCAUAACUUGAACAGGUUCAGACCUGCGUAGGGAAGUGGAGCGGUAUUUGU
..............((...............)...(.................))...................(....).............................
>CP000936.1/749906-749994
UAGAGACAUUUGGGGUGCUUUAAGCUGAGAUGAUACCCAUUGAACCUGAUACAGUUAAGACUGGCGAAGGGAAAUGUGAAACGUUUUUU
..............((.........)..(...........).)...........(....).............................
>AE008691.1/1524796-1524694
CUCAAGUGCUAGGGGAGCCAAAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUACGAAAU
.............(.(............)..(.................)).................(....).............................
>AE007317.1/646024-645926
AACAACCACUAGGGGUGCGUAAAGCUGAGAUUAACGACUGUUAGAUCCCUCUGACUCAAUCUAGGUAAUGCUAGCUGAUGGAAGUGGAAAUGAUAAUGG
..............((.........)..(.................))................(....).............................
>AALV01000001.1/1015631-1015532
UAAGAUACCUCGGGGGGCCUGACAGGCUGAGAUGUGCGCGCACGGACCCGUUGAACCUGAACCGGUUAACACCGGCGGAGGGAAGGUCUGGAUACACCUC
.............((............)..(..............))..................(....).............................
>CP003056.1/3348160-3348049
UCAAACUACUAGGGGUGCCCGGAUUUGGCGGGCUGAGAGAAAAACCGGCGUUUUUCAACCCUUUGGACCUGAUCCGGAUCAUACCGGCGUAGGAAAGUAGGAAUUUGUAAAA
...............((...............)....(..................))...................(....).............................
>BX548174.1/1543261-1543163
AAAUAUAACUAGGGGUGCUAAGUCAAUUACUUAGCUGAGAUCAUACCCUUCGAACCUGAAACAGUUAAAACUGACGCAGGAAAGUUUCAAUUUGAUCGA
..............(.(.................)...(.....))..................(....).............................
>AE007869.2/2541937-2541826
GCCAUUCACCAGGGGUGUCCCGUCAAGGGGCUGAGAUUCUGCUUUCAUGCGCAGUGACCCGUUGAACCUGAUCCAGUUCAUACUGGCGUAGGGACGGUGCAAAGACCUGAUG
..............((...............)...(..................).)...................(....)..............................
>AE008691.1/1681524-1681422
CUCAAGUGCUAGGGGAGCCAGAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUAUUGAGU
.............((.............)..(.................)).................(....).............................
>CT573326.1/5282526-5282420
AUGUUCUUGUCGGGGUGCCUUGAAGCAAAGGCUGAGAUCGCAAAGUUGCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUGCUCUCAUU
..............((................)..(.................)).................(....).............................
>CP000058.1/628566-628670
GCGUUCUUGUCGGGGUGCCUUGCUGUGAGGCUGAGAUCGGUUAAACCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUUCUCGUCUC
.............(.(...............)..(...............))..................(....).............................
>AF217503.1/595-688
ACAUGGCAUCGAUGGACUGGGUUCGUUCUGAGAUUAUACGGCUAAAACUUGAUCUGGAUAAUACCAGCGAAAAGGGUCAUGCCUUCUCUCGUUC
...............((............)...(..........................)).........................(....).
>CP000114.1/913402-913491
AUAGGACAUUUGGGGUGCGUAACAGCUGAGAUUAUACCCAUUGAACUUGAUGCAGUUAGUACUGUCGAAGGGAAAUGUGUGCCAUUACAA
.............((...........)..(.....))..................(....).............................
>AL766847.1/94269-94358
AUAGGACAUUUGGGGUGCGUAACAGCUGAGAUUAUACCCAUUGAACUUGAUACAGUUAGUACUGUCGAAGGGAAAUGUGUGCCAUUACAA
.............((...........)..(.....))..................(....).............................
>AE007870.2/312774-312876
AGCUCUUCCGAGGGGAGCACCAGACGGUGCUGAGAUGGUGGUGAACCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAACUGUCGUGCGCU
.............(.(..............)..(................))................(....).............................
>CP000076.1/627657-627761
CGGUUCUUGUCGGGGUGCCUUGCUAUGAGGCUGAGAUCGGAUAAUCCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUUCUCGUCAC
............(..(...............)..(................)).................(....).............................
>CP000141.1/198028-198135
AACGGCCACUGGGGGUGCCGGUCAAAACCGGCUGAGAGGGAGAGUUCUCCCAACCCUUUGAACCUGAUCCGGGUAAUACCGGCGUAGGGAAAGUGGGGUAACUGGAAG
..............((................)..(................))..................(....)..............................
>BX248354.1/27456-27566
AGUGUCCCCCGCGGGCGCCCGAGCACGGGCUGAGAUUGCGCUGAUGCUGUGCAAGCACCGUUUGAACCUGUCUGGUUAACACCAGCGAAGGAAGAGAGGAGCGCGAGCCUA
...............((............).....(.................))....................(....)..............................
>AL591688.1/3532865-3532978
GCUGCUCUAACGGGGUGCCCUGGCCGGCUUUGCGACCAUGGCUGAGAGGCUUCGAGCCAACCCGCGGAACCUGAUCCGGCUCAUACCGGCGGAGGGAUUAGAAGCGAUCGGACC
...............((........................)...(............))...................(....).............................
>M16495.1/2120-2233
GCCAUCUUGUCGGAGUGCCAACCGUCGAACGACGCGAGGCUGAGACCGUUAAUUCGGGAUCCGUGGAACCUGAUCAGGCUAGCACCUGCGAAGGGAAACAAGGGUAACUUGCGG
.....................((..........)...(........))..............................(....)..............................
>BX571861.1/7126-7022
GCCAUCUCAACGGGGUGCUGGCUGUUUAAAACAGCCUUGCUGAGAGUAAACCCGCCGAACCUGAUCCGGCUAAUACCGGCGUAGGGAUUUGAGCUGCUAACUAUU
..............(.(......................)...(.......))................(....)..............................
3 (().GA.())
(UNRN)
(()(G)R)N
 58 54.7
>AY316746.1/2276-2378
CUCCAUUCCGAGGGGAGCGCCGGGCGGCGCUGAGACGGCGGUGAGCCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAACGAGGCUGCCCU
.....((.......((..............)..(................)).....)(.........(....).........).).................
>CP000510.1/2895423-2895324
CAAAUAUAGUCGGGGGGCCUGAAGGCUGAGAUCGCAUAGUGCGAAACCCGUUGAACCUGAUUCAGUUAAUACUGGCGUAGGGAACUAUAAGUCUUGUUUU
.....((......((...........)..(...............))......).(.........(....).........).).................
>AF269570.1/1830-1729
UAGUAUCAUUAGGGGUGCAAUUCAAUUUGCUGAGAGAAAGUCUACUUUCAACCCUUGAACCUGUUGGUUAGCACCAGCGUAGGAAAGUGAGCAAUAUUGAUA
...(...(.....((...............)..(................))......)(.......(....).........).).................
>U64312.1/2271-2374
UAGUUCCACUAGGGGUGUCAGUUUGUCUGACUGAGAGAGGGAAGCCUCAACUCUUAAAACCUGAUCUAGCUUGUACUAGCGUAGGGAAGUGGUGGCACAUUCUA
.........((...((...............)..(..............))...)...(..........(....)..........).)................
>AL596164.1/123476-123581
AAGAAAAACUAGGGGGGCCGAUUCUGGCUGAGAUAGGAAGGUAAUGCUUUCUGACCCUUUGAACCUGUUUGUUAGUGCAAGCGUAGGGAAGUGAAUGUGAAAGUGA
......((......((............)....(...................))......)(........(....)..........).)................
>M73546.1/221-329
UUUAACCACUAGGGGUGUCCUUCAUAAGGGCUGAGAUAAAAGUGUGACUUUUAGACCCUCAUAACUUGAACAGGUUCAGACCUGCGUAGGGAAGUGGAGCGUAUUUGUG
.......((.....((...............)...(.................))........)(.........(....).........).).................
>AB087258.1/15478-15568
CCGACUUAGUCGGGGUGCUGAUAACAGCUGAGAUAAUACCCGUGAACCUGAUACAGUUAAUACUGACGUAGGAAACUAAUGGUCUUACUCC
......((.....((.............)..(.....))......)(.........(....).........).).................
>CP000002.3/1271349-1271457
GUUUUCCACUAGGGGAGUCCUUGAUAAGGGCUGAGAUAAAAGUUUGACUUUUAGACCCUCAUAACCUGAACAGGUUCAAACCUGCGUAGGGAAGUGGCACGGUAUUUGA
.........((...((...............)...(.................))......)..(.........(....).........).).................
>AACY022101973.1/389-487
UAUAAGUCCAAGGGGUGCCAAUUGGCUGAGAUGGUUUUAACCAAUCCCUUUGAACCUGAUCCGGUUAAUACCGGCGUAGGAAUGGAUUUUCUCUACAGC
..(..(.......((...........)..(...............))......)(.........(....).........).).................
>Z82044.1/19193-19300
AAUAGUUACUGGGGGUGCCCGCUUUCGGGCUGAGAGAGAAGGCAAGCUUCUUAACCCUUUGGACCUGAUCUGGUUCGUACCAGCGUGGGGAAGUAGAGGAAUUGUUUU
......((......((..............)..(...................))......).(.........(....).........).).................
>CP003056.1/3348160-3348049
UCAAACUACUAGGGGUGCCCGGAUUUGGCGGGCUGAGAGAAAAACCGGCGUUUUUCAACCCUUUGGACCUGAUCCGGAUCAUACCGGCGUAGGAAAGUAGGAAUUUGUAAAA
.......((......((...............)....(..................))......)..(.........(....).........).).................
>CP000716.1/1578877-1578987
AGAAAACCCGAGGGGAGCUCCAUAAGCCGGGGCUGAGAGGAAGGCGGAAGUCUUCGACCCUUAGAACCUGAACCGGGUAAUACCGGCGGAGGGACGGGUAGAGAAAAUUUC
.........((...((.................)...(.................)).....)..(..........(....)..........).)................
>BX548174.1/1543261-1543163
AAAUAUAACUAGGGGUGCUAAGUCAAUUACUUAGCUGAGAUCAUACCCUUCGAACCUGAAACAGUUAAAACUGACGCAGGAAAGUUUCAAUUUGAUCGA
.....(.(......(.(.................)...(.....))......).(.........(....).........).).................
>AL939124.1/163164-163269
AUAUUCCGACAGGGGAGCGCCACAGCGCUGAGAGUGCGGCACCGGCCGCAGACCCUCCGAACCUGGCCCAGGUCAUUCUGGGUAGGGAGAUCGGUCACCACUCGAG
........((...((..............)...(................).)......)(..........(....)...........).)...............
>AF104225.1/570-680
CGUUACCACAGGGGGGGCUUCUUAGCUGAGAUUGAGUCCACGUGUUUUUGGAUUCUGACCCUUUGAACCUGUUCGUUAAUACGAGCGUAGGGAUUGUGGCGAUUGCAUUUC
.......((......((...........)...(......................).)......)(.........(....)..........).).................
>AL766847.1/94269-94358
AUAGGACAUUUGGGGUGCGUAACAGCUGAGAUUAUACCCAUUGAACUUGAUACAGUUAGUACUGUCGAAGGGAAAUGUGUGCCAUUACAA
...((........((...........)..(.....)).......)(.........(....).........).).................
>CP000114.1/913402-913491
AUAGGACAUUUGGGGUGCGUAACAGCUGAGAUUAUACCCAUUGAACUUGAUGCAGUUAGUACUGUCGAAGGGAAAUGUGUGCCAUUACAA
...((........((...........)..(.....)).......)(.........(....).........).).................
>AL009126.3/1242262-1242370
UUUAACCACUAGGGGUGUCCUUCAUAAGGGCUGAGAUAAAAGUGUGACUUUUAGACCCUCAUAACUUGAACAGGUUCAGACCUGCGUAGGGAAGUGGAGCGGUAUUUGU
.........((...((...............)...(.................))......)..(.........(....).........).).................
>ABCF01000004.1/41916-42024
CAAAACCACUGGGGGAGCCUUUUAAAGGCUGAGAUUAAAGUGUACUACUUUAAGACCCUUUGAACCUGAUCUAGUUCAUACUAGCGGAGGGAAGUGUAGUCUGAAUGAU
....(.(......((...............)...(.................).)......).(..........(....)..........).)................
>AL766847.1/75304-75206
AAAUACACAAGGGAGUGCCUUGAGCUGAGAUUGCAGAUAUGCAAAAUCCUCUAACCUGAUCUCGUUAGGACGAGCGUAGGAAUUGUGGUUUGAAUUGGU
........((..((...........)..(..................))....)(.........(....).........).).................
>AAMD01000032.1/31845-31737
CGUUGUCGCUAGGGGUGCCCCCGUCAGGGGCUGAGAUGGCCGUGGACCGGCCAGACCCUUUGAACCUGAACCGGGUCAUACCGGCGGAGGGAAGCGGCGGGCGCUCCAA
......((.......((.............)....(.................)).......)(..........(....)..........).)................
>CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
......((......((.............)..(................)..)......).(.........(....).........).).................
>AE007869.2/2541937-2541826
GCCAUUCACCAGGGGUGUCCCGUCAAGGGGCUGAGAUUCUGCUUUCAUGCGCAGUGACCCGUUGAACCUGAUCCAGUUCAUACUGGCGUAGGGACGGUGCAAAGACCUGAUG
....((........((...............)...(..................).).......).(.........(....).........).)..................
>AY123045.1/16666-16547
AGUCCCUGUCAGGGGAGUCUCGCCAGAGAGACUGAGAGGCUAAUAGCGAUUUUCGCGGCUUAGCGACCCUUAGAACCUGACCCAGCUGAUACUGGCGUAGGAAGACUCGUAUCUUGAUGA
....(..(......((................)....(..........................))......)..(.........(....).........).).................
>AF264948.1/14680-14561
GGUUCCUGUCAGGGGAGUCUCGCCAGAGAGACUGAGAGGCUGAUAGCGAUUUUCGCGGCUUAGCGACCCUUAGAACCUGACCCAGCUGAUACUGGCGUAGGAAGACUCGUAUCUUGAUAA
......((......((................)....(..........................))......)..(.........(....).........).).................
>CP000489.1/34903-34800
CUCAUACACUUGGGGAGCCUCGCACGAGGCUGAGAGGUGCCGGGCACCGACCCAUCGAACCUGAUCCGGGUCAUGCCGGCGUAGGGAAGGGUAGAGUGAAGCGG
.........((...((..............)..(.................)).....)(.........(....).........).).................
>AARF01000324.1/6363-6261
UUUUUUCACUAGGGGCGCCCGUACGGGCUGAGACAGAAUGGUUUCUGGACCCUUUGAACCUGAUCUGGAUUAUACCAGCGUAGGAAAGUGGGAAUGCAUGAAU
.........((....((..........).....(............))....).....(.........(....).........).).................
>AF269819.1/1816-1718
AUUUGCUACUAGGGGAGCCAAAAGGCUGAGAUGAAUGUAUUCAGACCCUUAUAACCUGAUUUGGUUAAUACCAACGUAGGAAAGUAGUUAUUAACUAUU
..(.(.........((..........)..(..............)).......)(.........(....).........).).................
>AL009126.3/3179105-3179206
GAUGACCACAAGGGGAGCAUUAAAGCUGAGAGUGAGCGGUUUCGUUCUGACCCUUUGAACCUGUUAGUUAACGCUGGCGUAGGGAUGUGGCAAAGUCAAAUG
.......((.....((..........)..(...................)).....)(.........(....)..........).)................
>CT573326.1/5282526-5282420
AUGUUCUUGUCGGGGUGCCUUGAAGCAAAGGCUGAGAUCGCAAAGUUGCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUGCUCUCAUU
....((.........((..............).....(............)).........)(.........(....).........).).................
>AL596168.1/251336-251226
CGUUACCACAGGGGGGGCUUCUUAGCUGAGAUUGAAUCCGCGUGUUUUUGGAUUCUGACCCUUUGAACCUGUUCGUUAAUACGAGCGUAGGGAUUGUGGCGAUUGCAUUUC
.......((......((...........)...(......................).)......)(.........(....)..........).).................
>AE017180.1/640928-640827
AUAGUCUGCUGGGGGAGUUCUUGGGAACUGAGACGGGCAACGCCCGAACCCUUUGAACCUGAUCCGGUUUAUACCGGCGUAGGGAAGCGGCCAGAAACAAUC
......((.....((.............)..(...............))......)(..........(....)..........).)................
>AE008691.1/2140374-2140272
UCAAAGUGCUAGGGGAGCCAGAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUACGGAAU
.(...(........((............)..(................))........)(........(....)........).)..................
>AP008934.1/816596-816694
AAACGCUACUAGGGGAGCCAGUUGGCUGAGAUGAUUAAAUUCAGACCCUUACAACCUGAUUUGGUUAAUACCAACGUAGGAAAGUAGUUUAAUCUAAAG
.......((.....((..........)..(..............)).....)..(.........(....).........).).................
>AAEK01000033.1/47712-47817
UUUAUCCACUAGGGGGGCCUAUUAUAGGCUGAGAUCAAAUGGGAAUUUGAGACUCUUAGUACCUGAUCUGGUUAAUGCCAGCGUAGGGAAGUGGAAAAGACAUUGC
......((......((.............)..(..................))......)(..........(....)..........).)................
>AP006716.1/943397-943499
UAAUGCUACUAGGGGAGCCAUAGUAAAUGGCUGAGAUGAUUAAUUCAGACCCUUAUAACCUGAUUUGGUUAGUACCAACGUAGGAAAGUAGUUAUGUAAAUGU
.......((.....((...............)..(.............)).....)..(.........(....).........).).................
>CP000141.1/198028-198135
AACGGCCACUGGGGGUGCCGGUCAAAACCGGCUGAGAGGGAGAGUUCUCCCAACCCUUUGAACCUGAUCCGGGUAAUACCGGCGUAGGGAAAGUGGGGUAACUGGAAG
....(..(......((................)..(................))......)(..........(....)..........).).................
>X54035.1/52-153
GAUGACCACAAGGGGAGCAUUAAAGCUGAGAGUGAGCGGUUUCGUUCUGACCCUUUGAACCUGUUAGUUAACGCUGGCGUAGGGAUGUGGCAAAUGCAAUAG
.......((.....((..........)..(...................)).....)(.........(....)..........).)................
>AE004439.1/444121-444213
GACUCUUAGUCGGGGUGCUAUUGCGUUAGCUGAGAUGAUACCCGUGAACCUGAUGCAGUUAAUACUGACGUAGGAAACUAGCAGUCAAUAUUG
.........((..((...............)..(.....))....)..(.........(....).........).).................
>AE007870.2/312774-312876
AGCUCUUCCGAGGGGAGCACCAGACGGUGCUGAGAUGGUGGUGAACCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAACUGUCGUGCGCU
......((......((..............)...(.............))......).(.........(....).........).).................
>CP000076.1/627657-627761
CGGUUCUUGUCGGGGUGCCUUGCUAUGAGGCUGAGAUCGGAUAAUCCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUUCUCGUCAC
....((.........((.............).....(...........)).........)(.........(....).........).).................
>AF070520.1/2088-2190
GCGCAUUCCGAGGGGAGCACUAGACGGUGCUGAGAUGGCGUUGAGCCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAAAGAAGGCCGCCA
..........((..((..............)..(...............))...)...(.........(....).........).).................
>AE008691.1/1524796-1524694
CUCAAGUGCUAGGGGAGCCAAAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUACGAAAU
......((......((............)..(................))......).(.........(....).........).).................
>AJ002571.1/43977-43865
GGAAAGCACUAGGGGUGCUGUUUUGGCUGAGAUAAAGCGCGGAAGAAACGCGCUUUGAUCCCUUAUGACCCGAUCUGGAUAAUACCAGCGUGGGGAAGUGCAGGUUGACCGAA
.........((....((............)...(.....................).).....)...(..........(....)..........).)................
>CP000771.1/338574-338685
UAAUGCCUGGAGGGGAGCUCCAAAAUGCGGGGCUGAGAGGAAGGAGUCAAUCCUUCGACCCUUCGAACCUGAUCCGGGUAAUACCGGCGGAGGGACCAGGUGACUCAAAAAU
.........((...((.................)...(...................))......)(..........(....)..........).)................
>AF109218.1/4405-4502
UAAAAUUGCUAGGGGCGCCUUUUGGCUGAGAUAGUUUGACUAGACCCUUAUAACCUGAUUUGGUUCGUACCAACGUAGGAAAGUAGUAUAUUCAGAAU
......((......((..........)..(.............))......).(.........(....).........).).................
>CP000764.1/2008349-2008244
UCUAUCCACUAGGGGUGCCGAUAUUGGCUGAGAUUAAAGUUUAUCUUUGAGACCCUUAGUACCUGAUCUGGUUCGUACCAGCGUAGGGAAGUGGAAAUGACAAAAU
.....(.(.......((..........)....(.................)).......)(..........(....)..........).)................
>AE007317.1/646024-645926
AACAACCACUAGGGGUGCGUAAAGCUGAGAUUAACGACUGUUAGAUCCCUCUGACUCAAUCUAGGUAAUGCUAGCUGAUGGAAGUGGAAAUGAUAAUGG
..........((..((.........)..(.................))........)(......(....).........).).................
>AE008691.1/2399659-2399556
UAUGUCCGCUGGGGGAGCCUGAAAAGGCUGAGACGGCAGAAAUGCCGAACCCUUGGAACCUGAUGAGGGUAAUGCCUCCGUAGGGAAUGCGGGCUCAAAAGGCA
...(..(......((.............)..(................)).......)(.........(....).........).)..................
>CP000058.1/628566-628670
GCGUUCUUGUCGGGGUGCCUUGCUGUGAGGCUGAGAUCGGUUAAACCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUUCUCGUCUC
....(.(........((.............).....(...........))........).(.........(....).........).).................
>AE008691.1/1681524-1681422
CUCAAGUGCUAGGGGAGCCAGAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUAUUGAGU
......((......((............)..(................))......).(.........(....).........).).................
>AM039952.1/4100743-4100646
CCGCCGAAGUGGGGGUACCGCAGCGUGCUGCGGUUGAGAUAGUCCCUUCGAACCUGAUCCGGCUGAUACCGGCGUAGGGAAGCUUCGUCAGAUGCGAU
.........((...((..................)..(.....))....).(..........(....)..........).).................
>AL445066.1/239884-239777
AACUAGGCGAGGGGGAGCUCCAUAAGGGGGCUGAGAGGAUCCGGAUGGAUCGACCCCUGGAACCUGAUCCGGGUAAUACCGGCGGAGGGAAUCGUAUGAUGAAUGAGA
.....((.......((...............)....(..............)).......)(..........(....)..........).).................
>AALV01000001.1/1015631-1015532
UAAGAUACCUCGGGGGGCCUGACAGGCUGAGAUGUGCGCGCACGGACCCGUUGAACCUGAACCGGUUAACACCGGCGGAGGGAAGGUCUGGAUACACCUC
.....((.......((...........)...(............)).......)(..........(....)..........).)................
>AL939111.1/162719-162830
CAAGGCACUCGCGGGAGCCCGGACGCACCGGGCUGAGAGGGAGGCUGGCGGCCUCCGACCGUACGAACCUGAUCCGGGUCAUGCCGGCGAAGGGAGGGGCUGGACGCCCAUG
........((....((.................)....(.................))........)(.........(....).........).).................
>AP006627.1/829775-829676
AAGAACCACUAGGGGAGCCAUCUGGCUGAGAAAAGCGCUGCUUUGACCCUUUGAACCUGAUCUGGCUUGUACCAGCGUAGGGAAGUGGAGAACAAUUGCU
.(....(......((...........)..(...............))......)(..........(....)..........).)................
>CP000557.1/594796-594903
GACAUCCACUAGGGGGGCCUUUAGAAAGGCUGAGAUCAAAGUGUGCCUUUGAGACCCUUAGCACCUGAUCUGGGUAAUACCAGCGUAGGGAAGUGGAGAGGAGCUACA
....(..(......((..............)..(...................))......).(.........(....).........).).................
>BA000043.1/643262-643369
AUCAUCCACUAGGGGGGCCUUUAGAAAGGCUGAGAUCAAAGUGUGCCUUUGAGACCCUUAGCACCUGAUCUGGGUAAUGCCAGCGUAGGGAAGUGGAGGAGCAGCACA
.......((.....((..............)..(...................)).....).(..........(....)..........).)................

>AY123045.1/16666-16547
AGUCCCUGUCAGGGGAGUCUCGCCAGAGAGACUGAGAGGCUAAUAGCGAUUUUCGCGGCUUAGCGACCCUUAGAACCUGACCCAGCUGAUACUGGCGUAGGAAGACUCGUAUCUUGAUGA
..............((................)....(..........................))......................................................
..............((................)....(..........................))...................(....).............................
....(..(......((................)....(..........................))......)..(.........(....).........).).................
>AF269819.1/1816-1718
AUUUGCUACUAGGGGAGCCAAAAGGCUGAGAUGAAUGUAUUCAGACCCUUAUAACCUGAUUUGGUUAAUACCAACGUAGGAAAGUAGUUAUUAACUAUU
.............((...........)..(...............))....................................................
.............((...........)..(...............)).................(....).............................
..(.(.........((..........)..(..............)).......)(.........(....).........).).................
>M73546.1/221-329
UUUAACCACUAGGGGUGUCCUUCAUAAGGGCUGAGAUAAAAGUGUGACUUUUAGACCCUCAUAACUUGAACAGGUUCAGACCUGCGUAGGGAAGUGGAGCGUAUUUGUG
..............((...............)...(.................))......................................................
..............((...............)...(.................))...................(....).............................
.......((.....((...............)...(.................))........)(.........(....).........).).................
>AL766847.1/94269-94358
AUAGGACAUUUGGGGUGCGUAACAGCUGAGAUUAUACCCAUUGAACUUGAUACAGUUAGUACUGUCGAAGGGAAAUGUGUGCCAUUACAA
..............((..........)..(......))....................................................
.............((...........)..(.....))..................(....).............................
...((........((...........)..(.....)).......)(.........(....).........).).................
>AL939124.1/163164-163269
AUAUUCCGACAGGGGAGCGCCACAGCGCUGAGAGUGCGGCACCGGCCGCAGACCCUCCGAACCUGGCCCAGGUCAUUCUGGGUAGGGAGAUCGGUCACCACUCGAG
.............((..............)...(................).).....................................................
.............((..............)...(................).)..................(....).............................
........((...((..............)...(................).)......)(..........(....)...........).)...............
>AF264948.1/14680-14561
GGUUCCUGUCAGGGGAGUCUCGCCAGAGAGACUGAGAGGCUGAUAGCGAUUUUCGCGGCUUAGCGACCCUUAGAACCUGACCCAGCUGAUACUGGCGUAGGAAGACUCGUAUCUUGAUAA
..............((................)....(..........................))......................................................
..............((................)....(..........................))...................(....).............................
......((......((................)....(..........................))......)..(.........(....).........).).................
>AL445066.1/239884-239777
AACUAGGCGAGGGGGAGCUCCAUAAGGGGGCUGAGAGGAUCCGGAUGGAUCGACCCCUGGAACCUGAUCCGGGUAAUACCGGCGGAGGGAAUCGUAUGAUGAAUGAGA
..............((...............)...(...............)).......................................................
..............((...............)...(...............))...................(....)..............................
.....((.......((...............)....(..............)).......)(..........(....)..........).).................
>X54035.1/52-153
GAUGACCACAAGGGGAGCAUUAAAGCUGAGAGUGAGCGGUUUCGUUCUGACCCUUUGAACCUGUUAGUUAACGCUGGCGUAGGGAUGUGGCAAAUGCAAUAG
..............((..........)..(...................))...................................................
..............((..........)..(...................))................(....).............................
.......((.....((..........)..(...................)).....)(.........(....)..........).)................
>AF070520.1/2088-2190
GCGCAUUCCGAGGGGAGCACUAGACGGUGCUGAGAUGGCGUUGAGCCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAAAGAAGGCCGCCA
..............((..............)..(................))...................................................
..............((..............)..(................))................(....).............................
..........((..((..............)..(...............))...)...(.........(....).........).).................
>AF269570.1/1830-1729
UAGUAUCAUUAGGGGUGCAAUUCAAUUUGCUGAGAGAAAGUCUACUUUCAACCCUUGAACCUGUUGGUUAGCACCAGCGUAGGAAAGUGAGCAAUAUUGAUA
.............((...............)..(................))..................................................
.............((...............)..(................))...............(....).............................
...(...(.....((...............)..(................))......)(.......(....).........).).................
>AL596164.1/123476-123581
AAGAAAAACUAGGGGGGCCGAUUCUGGCUGAGAUAGGAAGGUAAUGCUUUCUGACCCUUUGAACCUGUUUGUUAGUGCAAGCGUAGGGAAGUGAAUGUGAAAGUGA
..............((............)....(...................))...................................................
..............((............)....(...................))................(....).............................
......((......((............)....(...................))......)(........(....)..........).)................
>CP000557.1/594796-594903
GACAUCCACUAGGGGGGCCUUUAGAAAGGCUGAGAUCAAAGUGUGCCUUUGAGACCCUUAGCACCUGAUCUGGGUAAUACCAGCGUAGGGAAGUGGAGAGGAGCUACA
..............((..............)...(.................).).....................................................
..............((..............)...(.................).)..................(....).............................
....(..(......((..............)..(...................))......).(.........(....).........).).................
>Z82044.1/19193-19300
AAUAGUUACUGGGGGUGCCCGCUUUCGGGCUGAGAGAGAAGGCAAGCUUCUUAACCCUUUGGACCUGAUCUGGUUCGUACCAGCGUGGGGAAGUAGAGGAAUUGUUUU
..............((..............)..(...................)).....................................................
..............((..............)..(...................))..................(....).............................
......((......((..............)..(...................))......).(.........(....).........).).................
>BA000043.1/643262-643369
AUCAUCCACUAGGGGGGCCUUUAGAAAGGCUGAGAUCAAAGUGUGCCUUUGAGACCCUUAGCACCUGAUCUGGGUAAUGCCAGCGUAGGGAAGUGGAGGAGCAGCACA
..............((..............)...(.................))......................................................
..............((..............)...(.................))...................(....).............................
.......((.....((..............)..(...................)).....).(..........(....)..........).)................
>AJ002571.1/43977-43865
GGAAAGCACUAGGGGUGCUGUUUUGGCUGAGAUAAAGCGCGGAAGAAACGCGCUUUGAUCCCUUAUGACCCGAUCUGGAUAAUACCAGCGUGGGGAAGUGCAGGUUGACCGAA
...............((............)...(.....................).).......................................................
...............((............)...(.....................).)....................(....).............................
.........((....((............)...(.....................).).....)...(..........(....)..........).)................
>AF109218.1/4405-4502
UAAAAUUGCUAGGGGCGCCUUUUGGCUGAGAUAGUUUGACUAGACCCUUAUAACCUGAUUUGGUUCGUACCAACGUAGGAAAGUAGUAUAUUCAGAAU
.............((...........)..(.............)).....................................................
.............((...........)..(.............))..................(....).............................
......((......((..........)..(.............))......).(.........(....).........).).................
>AACY022101973.1/389-487
UAUAAGUCCAAGGGGUGCCAAUUGGCUGAGAUGGUUUUAACCAAUCCCUUUGAACCUGAUCCGGUUAAUACCGGCGUAGGAAUGGAUUUUCUCUACAGC
.............((...........)..(...............))....................................................
.............((...........)..(...............)).................(....).............................
..(..(.......((...........)..(...............))......)(.........(....).........).).................
>AF104225.1/570-680
CGUUACCACAGGGGGGGCUUCUUAGCUGAGAUUGAGUCCACGUGUUUUUGGAUUCUGACCCUUUGAACCUGUUCGUUAAUACGAGCGUAGGGAUUGUGGCGAUUGCAUUUC
...............((...........)...(......................).).....................................................
...............((...........)...(......................).).................(....)..............................
.......((......((...........)...(......................).)......)(.........(....)..........).).................
>AP006627.1/829775-829676
AAGAACCACUAGGGGAGCCAUCUGGCUGAGAAAAGCGCUGCUUUGACCCUUUGAACCUGAUCUGGCUUGUACCAGCGUAGGGAAGUGGAGAACAAUUGCU
.............((...........)..(...............)).....................................................
.............((...........)..(...............))..................(....).............................
.(....(......((...........)..(...............))......)(..........(....)..........).)................
>U64312.1/2271-2374
UAGUUCCACUAGGGGUGUCAGUUUGUCUGACUGAGAGAGGGAAGCCUCAACUCUUAAAACCUGAUCUAGCUUGUACUAGCGUAGGGAAGUGGUGGCACAUUCUA
..............((...............)..(..............)).....................................................
..............((...............)..(..............))..................(....).............................
.........((...((...............)..(..............))...)...(..........(....)..........).)................
>AAEK01000033.1/47712-47817
UUUAUCCACUAGGGGGGCCUAUUAUAGGCUGAGAUCAAAUGGGAAUUUGAGACUCUUAGUACCUGAUCUGGUUAAUGCCAGCGUAGGGAAGUGGAAAAGACAUUGC
.............((..............)..(..................)).....................................................
.............((..............)..(..................))..................(....).............................
......((......((.............)..(..................))......)(..........(....)..........).)................
>AP006716.1/943397-943499
UAAUGCUACUAGGGGAGCCAUAGUAAAUGGCUGAGAUGAUUAAUUCAGACCCUUAUAACCUGAUUUGGUUAGUACCAACGUAGGAAAGUAGUUAUGUAAAUGU
.............(.(...............)..(..............))....................................................
.............(.(...............)..(..............)).................(....).............................
.......((.....((...............)..(.............)).....)..(.........(....).........).).................
>CP000510.1/2895423-2895324
CAAAUAUAGUCGGGGGGCCUGAAGGCUGAGAUCGCAUAGUGCGAAACCCGUUGAACCUGAUUCAGUUAAUACUGGCGUAGGGAACUAUAAGUCUUGUUUU
.............((...........)..(...............)).....................................................
.............((...........)..(...............))..................(....).............................
.....((......((...........)..(...............))......).(.........(....).........).).................
>ABCF01000004.1/41916-42024
CAAAACCACUGGGGGAGCCUUUUAAAGGCUGAGAUUAAAGUGUACUACUUUAAGACCCUUUGAACCUGAUCUAGUUCAUACUAGCGGAGGGAAGUGUAGUCUGAAUGAU
.............((...............)...(.................).)......................................................
.............((...............)...(.................).)...................(....).............................
....(.(......((...............)...(.................).)......).(..........(....)..........).)................
>AE017180.1/640928-640827
AUAGUCUGCUGGGGGAGUUCUUGGGAACUGAGACGGGCAACGCCCGAACCCUUUGAACCUGAUCCGGUUUAUACCGGCGUAGGGAAGCGGCCAGAAACAAUC
.............((.............)..(...............)).....................................................
.............((.............)..(...............))..................(....).............................
......((.....((.............)..(...............))......)(..........(....)..........).)................
>CP000002.3/1271349-1271457
GUUUUCCACUAGGGGAGUCCUUGAUAAGGGCUGAGAUAAAAGUUUGACUUUUAGACCCUCAUAACCUGAACAGGUUCAAACCUGCGUAGGGAAGUGGCACGGUAUUUGA
..............((...............)...(.................))......................................................
..............((...............)...(.................))...................(....).............................
.........((...((...............)...(.................))......)..(.........(....).........).).................
>AARF01000324.1/6363-6261
UUUUUUCACUAGGGGCGCCCGUACGGGCUGAGACAGAAUGGUUUCUGGACCCUUUGAACCUGAUCUGGAUUAUACCAGCGUAGGAAAGUGGGAAUGCAUGAAU
.............((.............)..(................)).....................................................
.............((.............)..(................))..................(....).............................
.........((....((..........).....(............))....).....(.........(....).........).).................
>AL596168.1/251336-251226
CGUUACCACAGGGGGGGCUUCUUAGCUGAGAUUGAAUCCGCGUGUUUUUGGAUUCUGACCCUUUGAACCUGUUCGUUAAUACGAGCGUAGGGAUUGUGGCGAUUGCAUUUC
...............((...........)...(......................).).....................................................
...............((...........)...(......................).).................(....)..............................
.......((......((...........)...(......................).)......)(.........(....)..........).).................
>AY316746.1/2276-2378
CUCCAUUCCGAGGGGAGCGCCGGGCGGCGCUGAGACGGCGGUGAGCCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAACGAGGCUGCCCU
..............((..............)..(................))...................................................
..............((..............)..(................))................(....).............................
.....((.......((..............)..(................)).....)(.........(....).........).).................
>AP008934.1/816596-816694
AAACGCUACUAGGGGAGCCAGUUGGCUGAGAUGAUUAAAUUCAGACCCUUACAACCUGAUUUGGUUAAUACCAACGUAGGAAAGUAGUUUAAUCUAAAG
..............((..........)..(...............))....................................................
..............((..........)..(...............)).................(....).............................
.......((.....((..........)..(..............)).....)..(.........(....).........).).................
>CP000114.1/913402-913491
AUAGGACAUUUGGGGUGCGUAACAGCUGAGAUUAUACCCAUUGAACUUGAUGCAGUUAGUACUGUCGAAGGGAAAUGUGUGCCAUUACAA
.............((...........)..(.....)).....................................................
.............((...........)..(.....))..................(....).............................
...((........((...........)..(.....)).......)(.........(....).........).).................
>AE008691.1/2399659-2399556
UAUGUCCGCUGGGGGAGCCUGAAAAGGCUGAGACGGCAGAAAUGCCGAACCCUUGGAACCUGAUGAGGGUAAUGCCUCCGUAGGGAAUGCGGGCUCAAAAGGCA
.............((.............)..(................))......................................................
.............((.............)..(................))..................(....)..............................
...(..(......((.............)..(................)).......)(.........(....).........).)..................
>AL939111.1/162719-162830
CAAGGCACUCGCGGGAGCCCGGACGCACCGGGCUGAGAGGGAGGCUGGCGGCCUCCGACCGUACGAACCUGAUCCGGGUCAUGCCGGCGAAGGGAGGGGCUGGACGCCCAUG
..............((.................)....(.................))......................................................
..............((.................)....(.................))...................(....).............................
........((....((.................)....(.................))........)(.........(....).........).).................
>CP000764.1/2008349-2008244
UCUAUCCACUAGGGGUGCCGAUAUUGGCUGAGAUUAAAGUUUAUCUUUGAGACCCUUAGUACCUGAUCUGGUUCGUACCAGCGUAGGGAAGUGGAAAUGACAAAAU
.............((.............)..(...................)).....................................................
.............((.............)..(...................))..................(....).............................
.....(.(.......((..........)....(.................)).......)(..........(....)..........).)................
>CP000716.1/1578877-1578987
AGAAAACCCGAGGGGAGCUCCAUAAGCCGGGGCUGAGAGGAAGGCGGAAGUCUUCGACCCUUAGAACCUGAACCGGGUAAUACCGGCGGAGGGACGGGUAGAGAAAAUUUC
..............((.................)...(.................))......................................................
..............((.................)...(.................))...................(....).............................
.........((...((.................)...(.................)).....)..(..........(....)..........).)................
>AL766847.1/75304-75206
AAAUACACAAGGGAGUGCCUUGAGCUGAGAUUGCAGAUAUGCAAAAUCCUCUAACCUGAUCUCGUUAGGACGAGCGUAGGAAUUGUGGUUUGAAUUGGU
............((...........)..(..................))..................................................
............((...........)..(..................))...............(....).............................
........((..((...........)..(..................))....)(.........(....).........).).................
>AAMD01000032.1/31845-31737
CGUUGUCGCUAGGGGUGCCCCCGUCAGGGGCUGAGAUGGCCGUGGACCGGCCAGACCCUUUGAACCUGAACCGGGUCAUACCGGCGGAGGGAAGCGGCGGGCGCUCCAA
..............((...............)...(.................))......................................................
..............((...............)...(.................))...................(....).............................
......((.......((.............)....(.................)).......)(..........(....)..........).)................
>CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
..............((.............)..(................)..).....................................................
..............((.............)..(................)..)..................(....).............................
......((......((.............)..(................)..)......).(.........(....).........).).................
>CP000489.1/34903-34800
CUCAUACACUUGGGGAGCCUCGCACGAGGCUGAGAGGUGCCGGGCACCGACCCAUCGAACCUGAUCCGGGUCAUGCCGGCGUAGGGAAGGGUAGAGUGAAGCGG
..............((..............)..(.................))...................................................
..............((..............)..(.................))................(....).............................
.........((...((..............)..(.................)).....)(.........(....).........).).................
>AL009126.3/3179105-3179206
GAUGACCACAAGGGGAGCAUUAAAGCUGAGAGUGAGCGGUUUCGUUCUGACCCUUUGAACCUGUUAGUUAACGCUGGCGUAGGGAUGUGGCAAAGUCAAAUG
..............((..........)...(..................))...................................................
..............((..........)...(..................))................(....).............................
.......((.....((..........)..(...................)).....)(.........(....)..........).)................
>CP000771.1/338574-338685
UAAUGCCUGGAGGGGAGCUCCAAAAUGCGGGGCUGAGAGGAAGGAGUCAAUCCUUCGACCCUUCGAACCUGAUCCGGGUAAUACCGGCGGAGGGACCAGGUGACUCAAAAAU
...............((...............).....(.................))......................................................
...............((...............).....(.................))...................(....).............................
.........((...((.................)...(...................))......)(..........(....)..........).)................
>AM039952.1/4100743-4100646
CCGCCGAAGUGGGGGUACCGCAGCGUGCUGCGGUUGAGAUAGUCCCUUCGAACCUGAUCCGGCUGAUACCGGCGUAGGGAAGCUUCGUCAGAUGCGAU
...............((................)...(..........))................................................
...............((................)...(..........))............(....)..............................
.........((...((..................)..(.....))....).(..........(....)..........).).................
>AL009126.3/1242262-1242370
UUUAACCACUAGGGGUGUCCUUCAUAAGGGCUGAGAUAAAAGUGUGACUUUUAGACCCUCAUAACUUGAACAGGUUCAGACCUGCGUAGGGAAGUGGAGCGGUAUUUGU
..............((...............)...(.................))......................................................
..............((...............)...(.................))...................(....).............................
.........((...((...............)...(.................))......)..(.........(....).........).).................
>AE008691.1/2140374-2140272
UCAAAGUGCUAGGGGAGCCAGAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUACGGAAU
.............(.(............)..(.................))....................................................
.............(.(............)..(.................)).................(....).............................
.(...(........((............)..(................))........)(........(....)........).)..................
>CP003056.1/3348160-3348049
UCAAACUACUAGGGGUGCCCGGAUUUGGCGGGCUGAGAGAAAAACCGGCGUUUUUCAACCCUUUGGACCUGAUCCGGAUCAUACCGGCGUAGGAAAGUAGGAAUUUGUAAAA
...............((...............)....(..................))......................................................
...............((...............)....(..................))...................(....).............................
.......((......((...............)....(..................))......)..(.........(....).........).).................
>AE004439.1/444121-444213
GACUCUUAGUCGGGGUGCUAUUGCGUUAGCUGAGAUGAUACCCGUGAACCUGAUGCAGUUAAUACUGACGUAGGAAACUAGCAGUCAAUAUUG
..............((..............)..(......))...................................................
..............((..............)..(......))................(....).............................
.........((..((...............)..(.....))....)..(.........(....).........).).................
>AE007869.2/2541937-2541826
GCCAUUCACCAGGGGUGUCCCGUCAAGGGGCUGAGAUUCUGCUUUCAUGCGCAGUGACCCGUUGAACCUGAUCCAGUUCAUACUGGCGUAGGGACGGUGCAAAGACCUGAUG
..............((...............)...(..................).).......................................................
..............((...............)...(..................).)...................(....)..............................
....((........((...............)...(..................).).......).(.........(....).........).)..................
>AE008691.1/1524796-1524694
CUCAAGUGCUAGGGGAGCCAAAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUACGAAAU
.............(.(............)..(.................))....................................................
.............(.(............)..(.................)).................(....).............................
......((......((............)..(................))......).(.........(....).........).).................
>AB087258.1/15478-15568
CCGACUUAGUCGGGGUGCUGAUAACAGCUGAGAUAAUACCCGUGAACCUGAUACAGUUAAUACUGACGUAGGAAACUAAUGGUCUUACUCC
.............((.............)..(.....))....................................................
.............((.............)..(.....)).................(....).............................
......((.....((.............)..(.....))......)(.........(....).........).).................
>AALV01000001.1/1015631-1015532
UAAGAUACCUCGGGGGGCCUGACAGGCUGAGAUGUGCGCGCACGGACCCGUUGAACCUGAACCGGUUAACACCGGCGGAGGGAAGGUCUGGAUACACCUC
.............((............)..(..............)).....................................................
.............((............)..(..............))..................(....).............................
.....((.......((...........)...(............)).......)(..........(....)..........).)................
>AE007317.1/646024-645926
AACAACCACUAGGGGUGCGUAAAGCUGAGAUUAACGACUGUUAGAUCCCUCUGACUCAAUCUAGGUAAUGCUAGCUGAUGGAAGUGGAAAUGAUAAUGG
..............((.........)..(.................))...................................................
..............((.........)..(.................))................(....).............................
..........((..((.........)..(.................))........)(......(....).........).).................
>CP000058.1/628566-628670
GCGUUCUUGUCGGGGUGCCUUGCUGUGAGGCUGAGAUCGGUUAAACCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUUCUCGUCUC
.............(.(...............)..(...............)).....................................................
.............(.(...............)..(...............))..................(....).............................
....(.(........((.............).....(...........))........).(.........(....).........).).................
>CT573326.1/5282526-5282420
AUGUUCUUGUCGGGGUGCCUUGAAGCAAAGGCUGAGAUCGCAAAGUUGCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUGCUCUCAUU
..............((................)..(.................))....................................................
..............((................)..(.................)).................(....).............................
....((.........((..............).....(............)).........)(.........(....).........).).................
>AE008691.1/1681524-1681422
CUCAAGUGCUAGGGGAGCCAGAAAUGGCUGAGAGGGGAUUCGUUCCCGACCCUUAGAACCUGACCAGGGUAAUGCCUGCGAAGGGAAGCACGUUUUAUUGAGU
.............((.............)..(.................))....................................................
.............((.............)..(.................)).................(....).............................
......((......((............)..(................))......).(.........(....).........).).................
>CP000141.1/198028-198135
AACGGCCACUGGGGGUGCCGGUCAAAACCGGCUGAGAGGGAGAGUUCUCCCAACCCUUUGAACCUGAUCCGGGUAAUACCGGCGUAGGGAAAGUGGGGUAACUGGAAG
..............((................)..(................))......................................................
..............((................)..(................))..................(....)..............................
....(..(......((................)..(................))......)(..........(....)..........).).................
>BX548174.1/1543261-1543163
AAAUAUAACUAGGGGUGCUAAGUCAAUUACUUAGCUGAGAUCAUACCCUUCGAACCUGAAACAGUUAAAACUGACGCAGGAAAGUUUCAAUUUGAUCGA
..............(.(.................)...(.....)).....................................................
..............(.(.................)...(.....))..................(....).............................
.....(.(......(.(.................)...(.....))......).(.........(....).........).).................
>CP000076.1/627657-627761
CGGUUCUUGUCGGGGUGCCUUGCUAUGAGGCUGAGAUCGGAUAAUCCGGAUCCCGUUGAACCUGAUCAGGUUAGCGCCUGCGUAGGGAACAAGAUUUCUCGUCAC
............(..(...............)..(................))....................................................
............(..(...............)..(................)).................(....).............................
....((.........((.............).....(...........)).........)(.........(....).........).).................
>AE007870.2/312774-312876
AGCUCUUCCGAGGGGAGCACCAGACGGUGCUGAGAUGGUGGUGAACCGGACCCUUGAACCUGAUCCGGGUCAUGCCGGCGUAGGAACGGAACUGUCGUGCGCU
.............(.(..............)..(................))...................................................
.............(.(..............)..(................))................(....).............................
......((......((..............)...(.............))......).(.........(....).........).).................
>BX571861.1/7126-7022
GCCAUCUCAACGGGGUGCUGGCUGUUUAAAACAGCCUUGCUGAGAGUAAACCCGCCGAACCUGAUCCGGCUAAUACCGGCGUAGGGAUUUGAGCUGCUAACUAUU
..............(.(......................)...(.......))....................................................
..............(.(......................)...(.......))................(....)..............................
>BX842573.1/168419-168309
GGGUACCCACGCGGGAGCGCACGCCGAGUGCGCUGAGAGGACGGCUCGGGGCCGUCGACCGUACGAACCUGACCGGGUAAUGCCGGCGUAGGGAGUUGCAAAUGACCAUCA
..............((.................)....(.................)).....................................................
..............((.................)....(.................))..................(....).............................
>M16495.1/2120-2233
GCCAUCUUGUCGGAGUGCCAACCGUCGAACGACGCGAGGCUGAGACCGUUAAUUCGGGAUCCGUGGAACCUGAUCAGGCUAGCACCUGCGAAGGGAAACAAGGGUAACUUGCGG
....................((............).....(....................))...................................................
.....................((..........)...(........))..............................(....)..............................
>BX248354.1/27456-27566
AGUGUCCCCCGCGGGCGCCCGAGCACGGGCUGAGAUUGCGCUGAUGCUGUGCAAGCACCGUUUGAACCUGUCUGGUUAACACCAGCGAAGGAAGAGAGGAGCGCGAGCCUA
...............((............).....(.................))........................................................
...............((............).....(.................))....................(....)..............................
>AF004408.1/427-558
ACCAUUCACCAGGGGUGCCCCGGCAAGGGGCUGAGAUUCUGCUGAACAAUACGGCUUUGCCUGUUGUGGCGCGGUGACCCGUUGAACCUGAUCCAGUUCAUACUGGCGUAGGGACGGUGCGGACCUGCGGCU
.......................((...............)....(....................))................................................................
.......................((...............)....(....................))............................(....)..............................
>AF217503.1/595-688
ACAUGGCAUCGAUGGACUGGGUUCGUUCUGAGAUUAUACGGCUAAAACUUGAUCUGGAUAAUACCAGCGAAAAGGGUCAUGCCUUCUCUCGUUC
...............((............)...(..........................))................................
...............((............)...(..........................)).........................(....).
>BX248356.1/232868-232999
UUUAUAAAUCACGGGUGCUGGACGGCAUACGUUUGCCACAAAGCUGAGACAGGGCGAGAAGACGUGCACGUCCCUGAACCGUUGAACCUGAUCCGGGUAAUACCGGCGAUAGGAAGAAUAAUGAACCGAUCG
...............((..........................).....(.........................)).......................................................
...............((..........................).....(.........................))...................(....)..............................
>AL445064.1/126097-125991
CUGGUGUGGUGGGGGAGCUCCAUAAGGGGCUGAGAGGAUCCGGAUGGAUCGAUCCCUGGAACCUGAUCCGGGUAAUACCGGCGGAGGGAAAUUAUGGAAAAAAAUAG
..............(.(................................)..(......))..............................................
..............(.(................................)..(......))..........(....)..............................
>AL672115.1/15647-15763
CGCAUUCACCAGGGGAGUCCCGGCAAGGGGCUGAGAUACUGCUGGCUUUCGCGGCGCAGUGACCCGUUGAACCUGAUCCAGUUCAUACUGGCGUAGGGACGGUGCAAGCGCUUUGCG
..............((...............).....(.....................).).......................................................
..............((...............).....(.....................).)...................(....)..............................
>BX248356.1/234808-234920
ACGAGAUGCCCGGGUGCCAUGUGCUUGCUGUACGUGGCUGAGACGGCUGUUUGGCCGAACCGUAGAACCUGAUCUGGGUAAUACCAGCGAUAGGAAGACUUCAUACUGUGACU
..............(.(...................).....(..............))......................................................
..............(.(...................).....(..............))..................(....)..............................
>CP000050.1/1019813-1019911
CCGCCGAAGUGGGGGUACCACAGCACUGCUGCGGUUGAGAUAGUCCCUUCGAACCUGAUCCGGCUCAUACCGGCGUAGGGAAGCUUCGUUAGAUGCGCU
..............(.(.................)...(.....)).....................................................
..............(.(.................)...(.....)).................(....)..............................
>CP000936.1/749906-749994
UAGAGACAUUUGGGGUGCUUUAAGCUGAGAUGAUACCCAUUGAACCUGAUACAGUUAAGACUGGCGAAGGGAAAUGUGAAACGUUUUUU
..............((.........)..(...........).)..............................................
..............((.........)..(...........).)...........(....).............................
>AL591688.1/3532865-3532978
GCUGCUCUAACGGGGUGCCCUGGCCGGCUUUGCGACCAUGGCUGAGAGGCUUCGAGCCAACCCGCGGAACCUGAUCCGGCUCAUACCGGCGGAGGGAUUAGAAGCGAUCGGACC
...............((........................)...(............))......................................................
...............((........................)...(............))...................(....).............................
>AB118748.1/319-422
UGGAGGGGUACCGGGUGUACGAGGCAGAGUCCGGUCGUUCUGAGAUUAUACUGUCAUAACUUGAUCUAGAUAAUACUAGCGAAAGGACAUGCGUGGCAUUGAUU
............((.....)..(.......))........................................................................
>AL627265.1/128216-128117
CCGAACUCAACGGGGUGCCGCGCUCAUGCGCGCGCUGAGAAAAUACCCGUCGAACCUGAUCCGGAUAAUGCCGGCGAAGGGAUUUGAGGCUACCUCUCAA
..............((...................)..(....)).......................................................
>BX927152.1/148798-148691
AUACUAGGCACGGGGUGCCAACCGGAUGGAAAAAUUCCGGAGGCUGAGAAAACACCCGUUGAACCUGCUCUAGCUCGUACUAGCGAAGGGAUGGCCUUAACGUGGCUA
..............(.(..........................)...(....))......................................................
>BX842649.1/277414-277318
ACCUGACGCUAGGGGUGUUGGUGAAUUCACCGACUGAGAAUAACCCUUUGAACCUGAUAGAGAUAAUGCUCGCGCAGGGAAGCAAGAAUAGAAAGAU
........(.(...................................).....(........................))..................
>AL583918.1/38806-38668
ACUUCAGUACACGGGAGUCCCCAGGCAGUCCGAAUCUGCGGGGCUGAGAGUGGGCACAGCCAGAGUGACUGAACCUACCCUUACCCUCCCACACCUGAUCCGGGUCAUGCCGGCGAAGGGAGGUUCAAGAUGCCGUCAG
..............((............................)..(..........))...............................................................................
>U81371.1/247-152
AAAAAACUAUUAGGGUGCCCGUAGUAUGGGUUUAGAAAAAACCUUUUGGACUUGAUAUGGAUCAUACCAGCUUAGGAAAGUAGUGUAAUUUUUUCC
..((.........................................).....(.................).)........................
>BX571860.1/177712-177587
ACUUUCUUGUCGGAGUGCCUAGCGUAAGCUGUUUUAUCGCAGCAUACACAGGCUGAGACCGUUAAUUCGGGAUCCGCGGAACCUGAUCGGGUUAAUACCCGCGAAGGGAACAAGAGUAAUCAACCG
.............(.(.....................................)..(..............)).....................................................
>AALZ01000004.1/372786-372686
AUCUAUCCGUCGGGGUGCCCUAGGGGGCUGAGAGGUGCGUGCACCGACCCGUCGAACCUGAUCCGGGCAAUACCGGCGUAGGGAACGGGUAUCUUUGUGCA
.............((.............)..(...............))....................................................
>CP000918.1/2145369-2145290
UACAGUCUGAGAGGAAGUGUUAAACUUCGACCGCACCUGAUCUGGGUAAUGCCAGCGGAGGGAACGAUACUUAGUCUAAU
........((...........................)...(............))........................
>BX548175.1/178356-178459
GCAAAACACUAGGGGUGCCAUUCAGCAAUCGCUGAGUGGCUGAGAUCACACCCUCCGAACCUGAUACGGGUUGUGCCGGCGCAGGGAAGUGAAAUGACGUGAUC
..............((........................)..(....))......................................................
>AL935263.2/202700-202607
UCAUAGCAACUGGGGUGCCAUCACGGCUGAGAUAAUACCCAUUGAACCUGAAUCUGGACAAUGCCAGCGCAGGGAGCAAUGCUUUUAUUUGGGG
.......((.................................)..(...........................))...................
>AL583918.1/33385-33496
AAAAAACCACGCGGGAGCACACACCAAGUGCGCUGAGAGGACGGAUCGGGGCCGUCGACCGUAUGAACCUGACCGGGUAAUGCCGGCGUAGGGAGAUGAAUAAUGACUGAAA
.......((............................)...(................................))....................................
>CP000919.1/639572-639660
UAAAGACAUUUGGGGUGCUUUAGGCUGAGAUGAUACCCAUUGAACCUGAUACAGUUAAGACUGGCGAAGGGAAAUGUGAAAUGUUUUUU
..........((..........................)....(..........................)).................
>CP000425.1/327513-327414
UAUUUGCACAAUGGGUCUAUUGACAAGUCUGUCAGUAGCGAGAAAUACCAUCUGACCUGAUCUGGGUAAUGCCAGCGUAGGAAUGUGUUAAGACAAUCGU
...........((....................................).....(........................))..................
>AL935263.2/99249-99354
UUUAAACACUAGGGGUGUCCAAAAAUGGGCUGAGAUGGUGCUGUAAGUACCGAUCCCUUUGAACCUGUAAGCUCAAACUUGCGUAGGAAAGUGUCACAGCUAAUGU
..............((..............)..(...................))...................................................
>AL009126.3/1607367-1607468
GAUUCAUCCUAGGGGUGCUUUGCGAAGCUGAGAGAGACUUUGUCUCAACCCUUUUGACCUGAUCUGGAUCAUGCCAGCGGAGGGAAGCGGUGAAAAGCGGAG
.............((.............)..(...............)).....................................................
>AE017221.1/302202-302311
GGGGCAGGCUAGGGGUGCCCGAAUGGAAGGGCUGAGAGCUGGGUUUCUCCCAGCAACCCUUGGAACCUGAUCCGGGUAAUGCCGGCGGAGGGAAGCCUAUGCGGAAGACC
..............((................)...(.................))......................................................
>CP000830.1/937748-937645
CAACAACCGUUGGGGUGCCCGAUUCAGGGCUGAGAGGCGCACUGUGCCGACCCAUGGAACCUGAUCCGGGCAAUACCGGCGUAGGGAACGGUCAUCGUGGCAAU
.............((...............)..(...............)).....................................................
>CP001488.1/228163-228057
CAAAAUUCGUUGGGGUGCCUUGAAAGAGGCUGAGAGACGCAUUCUCACGUCAACCCAUUGAACCUGAUCCGGGUAAUACCUGCGUAGGGAACGGAGUUUGGCGCGUC
...........((..........................................)......(........................))..................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (().GA.()) < 0.001 15.1
CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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2 (UNRN) < 0.001 5.6
CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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3 (()(G)R)N < 0.001 1.93
CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 ((U)G(A)) < 0.001 11.8
CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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2 (UNRU) < 0.001 9.68
CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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3 .AGA. < 0.001 1.17
CP000568.1/733772-733877
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
UCAUCACGCUAGGGGUGCCAUUGUGGCUGAGAAAGAGACUUAAGUCUCUUAACCCUUUGAACCUGAUGCGGUUAGUACCGCCGGAGGGAAGCGGAAAAUAUUGUUU
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).