D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-302   (Rfam: RF00668)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(U()U)
(YN()UN)
(.U.().AA.)
((C)U)Y
((C)A)U
97.7
100.0
100.0
100.0
88.6
(U()U)
(.U.().AA.)

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 98.4 %
(± 0.395 %)
Decision tree:

5-fold cross-validation: 87.1 %
(± 7.23 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 94 %
(± 3.96 %)
of CAAA01211654.1/15598-15663
CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(((((.((((.((((.((((((..(((.....)))..))))))).))).)))).)))))..)
.........1.........2.........3.........4.........5.........6......
123456789012345678901234567890123456789012345678901234567890123456

abstract shape: ()

Number of sequences
Structure ORBs (out of 44) (%)
1 (U()U)
 40 90.9
>CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
........(.(.............................................).).......
>AAIY01685397.1/7173-7105
CCUCUACUCUAACACGGCGGCACUUGCUGUGGCUUUUUGGAAAUUAAGUGCUUCCAUGUUUGAGUGUGG
........(.(................................................).).......
>CAAA01211654.1/15470-15538
CCACCACUUAAACGUGGUUGUACUUGCUUUAGACCUAAGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
.......(.(.................................................).).......
>AAGW02021863.1/25249-25316
UCUCUACUUUAACAUGGAGGCACUUGCUGUGCCAUGAUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
........(.(...............................................).).......
>AAFC03065343.1/37046-36982
UCACCACCUAACCUGGGAAGCGCUUGCUUUGAAACUAUUAAAGUGCUUCCAUGUUUUUGUGGUGA
.......(.(..............................................).)......
>AAGV021030223.1/1436-1370
CCUCUACUUUACAUUGGAAGCACUGCUGUGAGCUAUUUUAUUAAGUGCUUCCCAUGUUUGAGUGUGG
.......(.(...............................................).).......
>AAYZ01300380.1/1467-1400
CCUUUGCUUUAACAUGGGGGCACCUGCUGUGUACAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
........(.(..............................................).)........
>AADN03003749.1/40360-40294
CCACAACUUAAAUGUGGAUGUGCUUGCUUUGUUCUGAAAAGAAAGUGCUUCCAUGUUUUAGUGAUGG
.......(.(...............................................).).......
>AAFR03016534.1/30254-30320
UCUCUGCUUUAACAUGGGGGUACCUGCUACGUAAUAAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGA
........(.(.............................................).)........
>AAQR03142114.1/15713-15646
UCUCUACUUUAACAUGGAGGCAUUUGCUGUGACAUAACAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
........(.(...............................................).).......
>AAIY01685397.1/7598-7532
CUUGGACUUUAACAAGGAGGCCCUUUUACUACUUAAAAAAGUAAGUGCUUCCUUGUUUUAGUAAAAG
.......(.(...............................................).).......
>AAEX03016829.1/107918-107850
CCACCACUUAAACGUGGAUGUACUUGCUUUGAAACUCAAAAAGUAAGUGCUUCCAUGUUUUAGUGAUGG
.......(.(.................................................).).......
>ADDD01113690.1/5635-5571
CCUCCGCUUUAACAUGGAGGUACCUGCUGCCUACAAAAGUAAGUGCUUCCAUGUUUCAGUGGUGG
........(.(...........................................).)........
>AAWZ02004954.1/27325-27392
CCACUACUUUAAUAUGAAAGUACUUGUUUUUGUUCCUUUUAAAAAGUGCUUUCAUAUUUUAGUGAUGG
........(.(...............................................).).......
>CAAA01211654.1/15207-15274
CUUCAACUUUAACAUGGGAAUGCUUUCUGUCUCAUCGAAGAGUAAGUGCUUCCAUGUUUUAGUAGAAG
........(.(...............................................).).......
>AAWR02000508.1/11188-11120
CCACCACUUACACAUGGAUGCACUUGCUUUGACACUAAAAAAGGAAGCACUCGCAUGUUUUAAUGAUGG
.......(.(.................................................).).......
>AADA01066072.1/27294-27227
CCUUUGCUUUAACAUGGGGGUACCUGCUGUGUGAAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
........(.(..............................................).)........
>AANN01821362.1/2593-2523
CUUUAACUUUAAUGUGGAAGUGCUUUCUGUGAUUCUAAAAUAUAGUAAGUGCUUCCAUGUUUUAGUGUAAG
........(.(.................................................).)........
>AADD01049814.1/10290-10224
CUUCAACUUUAACAUGGAAGUGCUUUCUGUGACUUUAAAAGUAAGUGCUUCCAUGUUUUAGUAGGAG
.......(.(...............................................).).......
>AAPN01081641.1/13571-13636
CUGUCACUUAAACGUGGAUAAACUUGCUUUACUUUUAAAGUAAGUGCUUCCAUGUUUUAGUGAUGG
.......(.(..............................................).).......
>AAHX01020222.1/16186-16122
CCUUCACUUUAACAUGGAGGCCCUCGCUGUGCCUUUAAAAUAAGUGCUUCCAGGUUUGAGUGUGG
........(.(............................................).).......
>AAHY01031685.1/1176-1109
CUUCAACUUUAACAUGGGAAUGCUUUCUGUCUCAUCUAAGAGUAAGUGCUUCCAUGUUUUAGUAGAAG
.......(.(................................................).).......
>AAIY01685397.1/7477-7410
CCUUUGCUUUAACAUGGGAGUACCUGCUGUGCAAAAUGAAAGUAAGUGCUUCCAUGUUUCAGCGGAGG
........(.(..............................................).)........
>AAQQ01250562.1/1745-1679
CCUUUACUUUAACAUGGAGGCACUUGCUGUGACAUGAUAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
........(.(..............................................).).......
>CAAA01211654.1/15337-15404
CCUCUGCUUUAACAUGGGGUUACCUGCUGUGUUAAACAAAAGCAAGUGCUUCCAUGUUUCAGUGGGGG
........(.(..............................................).)........
>AAPN01081641.1/13679-13747
CUUCUCCUUUAACAUGGAGGUGCUUGCUGUGAGUUUGAAAAAUUAAGUGCUUCCAUGUUUUAGUUGAAG
........(.(...............................................).)........
>AAPY01419152.1/185-114
CUUUGACUUUAACAUGGAGGUACUCUCUGUGCCUUUUUAGAAAGAGUAAGUGCUUCCAUGUUUUAGUGGAAG
........(.(..................................................).)........
>ABDC01525090.1/901-968
CCUUUGCUUUAACAUGGGGGUACAUGCUGUGUGAAUCAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
........(.(..............................................).)........
>AAFR03016534.1/30625-30693
CCUCUGCUUUAACAUGGAAGUGCUUGCUGUGAUUUUAAAAAAUUAAGUGCUUCCAUGUUUGAGUUGUGG
........(.(...............................................).)........
>AAPY01684075.1/7919-7851
CCACCACUUAAACGUGGGAGUACUUGCUUUAUAACGGGGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
.......(.(.................................................).).......
>AALT01320989.1/607-537
CUUUGACUUUAACAUGGGAGUGCUUUUCUGUGUGUUCUCAGAGAGUAAGUGCUUCCAUGUUUGAGUAGAAG
........(.(.................................................).)........
>AALT01320989.1/475-405
CCUUCGCUUUAACACGGGGGGCACUUGCUGUGUGCCCACAGAAGUAAGUGCUUCCUGUGUUUCAGUGGAGG
........(.(................................................).).........
>AAFR03016534.1/30106-30172
CUUCUACUUUAACAUGGAGGUACUUUCUGUGUUUAAAAAGGUAAGUGCUUCCAUGUUUUGGUAGGAG
.......(.(...............................................).).......
>AADN03003749.1/40923-40855
CUUUUACUUUAACAUGGAGGUGCUUUCUGUGAUUUUACAAAAGUAAGUGCUUCCAUGUUUUAGUAGAGG
........(.(...............................................).)........
>AANN01821362.1/2160-2092
CCACCACUUUAACAUGGAGGCGCUUGCUGUAUCAUCUUAAGAAUAAGUGCUUCCAUGUUUUAGUGUUGG
........(.(...............................................).)........
>AADN03003749.1/40025-39957
CCUCAACUUUAACAUGGAGGUACUUGCUGGACACCUGAAAAAGUAAGUGCUUCCAUGUUUUAGUUGUGG
........(.(...............................................).)........
>AAGU03033948.1/13326-13257
CUUUGACUUUAACAAGGAGGUCCUUUCUGCUAUUUGUAAAAAAGUAAGUGCUUCCUUGUUUUAGUAGAAG
........(.(................................................).)........
>AALT01320989.1/195-127
CCGCGACUUUAACAUGGAGGCACUUGCUGGGACCUGACCAAAAAUAAGUGCUUCCAUGUUUUAGUGUGG
........(.(................................................).).......
>AANU01270256.1/2613-2682
CUUCAACUUUAACAUGGAAGUGCUUUCUGUGACUUUAAAAUAAGUAAGUGCUUCCAUGUUUUAGUAGGAG
........(.(................................................).)........
>AAWR02036366.1/23003-22935
CCACCACUUAAAUGUGGGUGUUCUUGCUUUGAAAUUAAAAAAGAAAGUACUUCCAUACUUUAGAGAUGG
.......(.(.................................................).).......
2 (U()U)
(YN()UN)
 37 84.1
>AADA01066072.1/27294-27227
CCUUUGCUUUAACAUGGGGGUACCUGCUGUGUGAAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(..............................................).).)..)...
>AANN01821362.1/2593-2523
CUUUAACUUUAAUGUGGAAGUGCUUUCUGUGAUUCUAAAAUAUAGUAAGUGCUUCCAUGUUUUAGUGUAAG
...................(..(.(.(.................).).)..)...................
>CAAA01211654.1/15207-15274
CUUCAACUUUAACAUGGGAAUGCUUUCUGUCUCAUCGAAGAGUAAGUGCUUCCAUGUUUUAGUAGAAG
...................(..(.(.(..............).).)..)...................
>AADN03003749.1/40025-39957
CCUCAACUUUAACAUGGAGGUACUUGCUGGACACCUGAAAAAGUAAGUGCUUCCAUGUUUUAGUUGUGG
(..(...(.(.................................................).)...)..)
>AANN01821362.1/2160-2092
CCACCACUUUAACAUGGAGGCGCUUGCUGUAUCAUCUUAAGAAUAAGUGCUUCCAUGUUUUAGUGUUGG
(..(...(.(.................................................).)...)..)
>AADN03003749.1/40923-40855
CUUUUACUUUAACAUGGAGGUGCUUUCUGUGAUUUUACAAAAGUAAGUGCUUCCAUGUUUUAGUAGAGG
...................(..(.(.(...............).).)..)...................
>AAQR03142114.1/15713-15646
UCUCUACUUUAACAUGGAGGCAUUUGCUGUGACAUAACAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(...............................................).)...)..)
>AAFC03065343.1/37046-36982
UCACCACCUAACCUGGGAAGCGCUUGCUUUGAAACUAUUAAAGUGCUUCCAUGUUUUUGUGGUGA
(..(...(.(.............................................).)...)..)
>AAGW02021863.1/25249-25316
UCUCUACUUUAACAUGGAGGCACUUGCUGUGCCAUGAUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(...............................................).)...)..)
>AAQQ01250562.1/1745-1679
CCUUUACUUUAACAUGGAGGCACUUGCUGUGACAUGAUAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(..............................................).)...)..)
>AADD01049814.1/10290-10224
CUUCAACUUUAACAUGGAAGUGCUUUCUGUGACUUUAAAAGUAAGUGCUUCCAUGUUUUAGUAGGAG
...................(..(.(.(.............).).)..)...................
>AAFR03016534.1/30254-30320
UCUCUGCUUUAACAUGGGGGUACCUGCUACGUAAUAAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGA
...(..(.(.(.............................................).).)..)...
>AAWR02000508.1/11188-11120
CCACCACUUACACAUGGAUGCACUUGCUUUGACACUAAAAAAGGAAGCACUCGCAUGUUUUAAUGAUGG
(..(...(.(.................................................).)...)..)
>AAPY01419152.1/185-114
CUUUGACUUUAACAUGGAGGUACUCUCUGUGCCUUUUUAGAAAGAGUAAGUGCUUCCAUGUUUUAGUGGAAG
...................(..(.(.(..................).).)..)...................
>CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(.............................................).)...)..)
>AALT01320989.1/195-127
CCGCGACUUUAACAUGGAGGCACUUGCUGGGACCUGACCAAAAAUAAGUGCUUCCAUGUUUUAGUGUGG
(..(...(.(..................................................).)..)..)
>AAWZ02004954.1/27325-27392
CCACUACUUUAAUAUGAAAGUACUUGUUUUUGUUCCUUUUAAAAAGUGCUUUCAUAUUUUAGUGAUGG
(..(...(.(................................................).)...)..)
>AADN03003749.1/40360-40294
CCACAACUUAAAUGUGGAUGUGCUUGCUUUGUUCUGAAAAGAAAGUGCUUCCAUGUUUUAGUGAUGG
(..(...(.(...............................................).)...)..)
>CAAA01211654.1/15470-15538
CCACCACUUAAACGUGGUUGUACUUGCUUUAGACCUAAGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
(..(...(.(.................................................).)...)..)
>AAGU03033948.1/13326-13257
CUUUGACUUUAACAAGGAGGUCCUUUCUGCUAUUUGUAAAAAAGUAAGUGCUUCCUUGUUUUAGUAGAAG
...................(..(.(.(................).).)..)...................
>AAHX01020222.1/16186-16122
CCUUCACUUUAACAUGGAGGCCCUCGCUGUGCCUUUAAAAUAAGUGCUUCCAGGUUUGAGUGUGG
.(..(...(.(............................................).)...)..)
>AANU01270256.1/2613-2682
CUUCAACUUUAACAUGGAAGUGCUUUCUGUGACUUUAAAAUAAGUAAGUGCUUCCAUGUUUUAGUAGGAG
...................(..(.(.(................).).)..)...................
>CAAA01211654.1/15337-15404
CCUCUGCUUUAACAUGGGGUUACCUGCUGUGUUAAACAAAAGCAAGUGCUUCCAUGUUUCAGUGGGGG
...(..(.(.(..............................................).).)..)...
>AAIY01685397.1/7598-7532
CUUGGACUUUAACAAGGAGGCCCUUUUACUACUUAAAAAAGUAAGUGCUUCCUUGUUUUAGUAAAAG
...................(..(.(.(.............).).)..)...................
>AAHY01031685.1/1176-1109
CUUCAACUUUAACAUGGGAAUGCUUUCUGUCUCAUCUAAGAGUAAGUGCUUCCAUGUUUUAGUAGAAG
...................(..(.(.(..............).).)..)...................
>AAPN01081641.1/13571-13636
CUGUCACUUAAACGUGGAUAAACUUGCUUUACUUUUAAAGUAAGUGCUUCCAUGUUUUAGUGAUGG
(..(...(.(..............................................).)...)..)
>ADDD01113690.1/5635-5571
CCUCCGCUUUAACAUGGAGGUACCUGCUGCCUACAAAAGUAAGUGCUUCCAUGUUUCAGUGGUGG
(..(....(.(...........................................).)....)..)
>AAIY01685397.1/7173-7105
CCUCUACUCUAACACGGCGGCACUUGCUGUGGCUUUUUGGAAAUUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(................................................).)...)..)
>ABDC01525090.1/901-968
CCUUUGCUUUAACAUGGGGGUACAUGCUGUGUGAAUCAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(..............................................).).)..)...
>AAYZ01300380.1/1467-1400
CCUUUGCUUUAACAUGGGGGCACCUGCUGUGUACAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(..............................................).).)..)...
>AAPN01081641.1/13679-13747
CUUCUCCUUUAACAUGGAGGUGCUUGCUGUGAGUUUGAAAAAUUAAGUGCUUCCAUGUUUUAGUUGAAG
..(..(.(.(.................................................).).)..)..
>AAEX03016829.1/107918-107850
CCACCACUUAAACGUGGAUGUACUUGCUUUGAAACUCAAAAAGUAAGUGCUUCCAUGUUUUAGUGAUGG
(..(...(.(.................................................).)...)..)
>AAGV021030223.1/1436-1370
CCUCUACUUUACAUUGGAAGCACUGCUGUGAGCUAUUUUAUUAAGUGCUUCCCAUGUUUGAGUGUGG
(..(...(.(...............................................).)...)..)
>AALT01320989.1/475-405
CCUUCGCUUUAACACGGGGGGCACUUGCUGUGUGCCCACAGAAGUAAGUGCUUCCUGUGUUUCAGUGGAGG
...(..(.(.(.................................................).).)..)...
>AAPY01684075.1/7919-7851
CCACCACUUAAACGUGGGAGUACUUGCUUUAUAACGGGGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
(..(...(.(.................................................).)...)..)
>AAFR03016534.1/30625-30693
CCUCUGCUUUAACAUGGAAGUGCUUGCUGUGAUUUUAAAAAAUUAAGUGCUUCCAUGUUUGAGUUGUGG
(..(....(.(...............................................).)....)..)
>AAFR03016534.1/30106-30172
CUUCUACUUUAACAUGGAGGUACUUUCUGUGUUUAAAAAGGUAAGUGCUUCCAUGUUUUGGUAGGAG
...(..(.(.(.............................................).).)..)...
3 (U()U)
(YN()UN)
(.U.().AA.)
 28 63.6
>AAYZ01300380.1/1467-1400
CCUUUGCUUUAACAUGGGGGCACCUGCUGUGUACAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(...............(.(.........)..)...............).).)..)...
>CAAA01211654.1/15470-15538
CCACCACUUAAACGUGGUUGUACUUGCUUUAGACCUAAGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
(..(...(.(...............(..(.........)....)...............).)...)..)
>AAFR03016534.1/30254-30320
UCUCUGCUUUAACAUGGGGGUACCUGCUACGUAAUAAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGA
...(..(.(.(...............(.(........)..)...............).).)..)...
>CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(..............(..(.........)..)..............).)...)..)
>AAFC03065343.1/37046-36982
UCACCACCUAACCUGGGAAGCGCUUGCUUUGAAACUAUUAAAGUGCUUCCAUGUUUUUGUGGUGA
(..(...(.(.............(.(.........).....).............).)...)..)
>AAEX03016829.1/107918-107850
CCACCACUUAAACGUGGAUGUACUUGCUUUGAAACUCAAAAAGUAAGUGCUUCCAUGUUUUAGUGAUGG
(..(...(.(...............(..(.........)....)...............).)...)..)
>AALT01320989.1/475-405
CCUUCGCUUUAACACGGGGGGCACUUGCUGUGUGCCCACAGAAGUAAGUGCUUCCUGUGUUUCAGUGGAGG
...(..(.(.(..............(...(.........).....)..............).).)..)...
>AAFR03016534.1/30106-30172
CUUCUACUUUAACAUGGAGGUACUUUCUGUGUUUAAAAAGGUAAGUGCUUCCAUGUUUUGGUAGGAG
...(..(.(.(...............(.(.......)...)...............).).)..)...
>AAQQ01250562.1/1745-1679
CCUUUACUUUAACAUGGAGGCACUUGCUGUGACAUGAUAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(..............(...(.........)..)..............).)...)..)
>AAPN01081641.1/13679-13747
CUUCUCCUUUAACAUGGAGGUGCUUGCUGUGAGUUUGAAAAAUUAAGUGCUUCCAUGUUUUAGUUGAAG
..(..(.(.(...............(...(.........)...)...............).).)..)..
>AAPY01684075.1/7919-7851
CCACCACUUAAACGUGGGAGUACUUGCUUUAUAACGGGGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
(..(...(.(...............(..(..........)...)...............).)...)..)
>AAGW02021863.1/25249-25316
UCUCUACUUUAACAUGGAGGCACUUGCUGUGCCAUGAUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(..............(..(.........)....)..............).)...)..)
>AAGV021030223.1/1436-1370
CCUCUACUUUACAUUGGAAGCACUGCUGUGAGCUAUUUUAUUAAGUGCUUCCCAUGUUUGAGUGUGG
(..(...(.(............(...(............)....)............).)...)..)
>AAWZ02004954.1/27325-27392
CCACUACUUUAAUAUGAAAGUACUUGUUUUUGUUCCUUUUAAAAAGUGCUUUCAUAUUUUAGUGAUGG
(..(...(.(...............(...(.........)..)...............).)...)..)
>AALT01320989.1/195-127
CCGCGACUUUAACAUGGAGGCACUUGCUGGGACCUGACCAAAAAUAAGUGCUUCCAUGUUUUAGUGUGG
(..(...(.(...............(..(.........).....)...............).)..)..)
>AADA01066072.1/27294-27227
CCUUUGCUUUAACAUGGGGGUACCUGCUGUGUGAAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(...............(.(.........)..)...............).).)..)...
>CAAA01211654.1/15337-15404
CCUCUGCUUUAACAUGGGGUUACCUGCUGUGUUAAACAAAAGCAAGUGCUUCCAUGUUUCAGUGGGGG
...(..(.(.(...............(.(.........)..)...............).).)..)...
>AAWR02000508.1/11188-11120
CCACCACUUACACAUGGAUGCACUUGCUUUGACACUAAAAAAGGAAGCACUCGCAUGUUUUAAUGAUGG
(..(...(.(................(.(.........)...)................).)...)..)
>AAFR03016534.1/30625-30693
CCUCUGCUUUAACAUGGAAGUGCUUGCUGUGAUUUUAAAAAAUUAAGUGCUUCCAUGUUUGAGUUGUGG
(..(....(.(..............(...(.........)...)..............).)....)..)
>ABDC01525090.1/901-968
CCUUUGCUUUAACAUGGGGGUACAUGCUGUGUGAAUCAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(...............(.(.........)..)...............).).)..)...
>AADN03003749.1/40360-40294
CCACAACUUAAAUGUGGAUGUGCUUGCUUUGUUCUGAAAAGAAAGUGCUUCCAUGUUUUAGUGAUGG
(..(...(.(................(.(........)..)................).)...)..)
>AADN03003749.1/40025-39957
CCUCAACUUUAACAUGGAGGUACUUGCUGGACACCUGAAAAAGUAAGUGCUUCCAUGUUUUAGUUGUGG
(..(...(.(..............(...(..........)....)..............).)...)..)
>ADDD01113690.1/5635-5571
CCUCCGCUUUAACAUGGAGGUACCUGCUGCCUACAAAAGUAAGUGCUUCCAUGUUUCAGUGGUGG
(..(....(.(............(..(........)...)..............).)....)..)
>AAIY01685397.1/7173-7105
CCUCUACUCUAACACGGCGGCACUUGCUGUGGCUUUUUGGAAAUUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(...............(...(.........)..)...............).)...)..)
>AAPN01081641.1/13571-13636
CUGUCACUUAAACGUGGAUAAACUUGCUUUACUUUUAAAGUAAGUGCUUCCAUGUUUUAGUGAUGG
(..(...(.(................(.(.......)..)................).)...)..)
>AANN01821362.1/2160-2092
CCACCACUUUAACAUGGAGGCGCUUGCUGUAUCAUCUUAAGAAUAAGUGCUUCCAUGUUUUAGUGUUGG
(..(...(.(...............(...(.........)...)...............).)...)..)
>AAHX01020222.1/16186-16122
CCUUCACUUUAACAUGGAGGCCCUCGCUGUGCCUUUAAAAUAAGUGCUUCCAGGUUUGAGUGUGG
.(..(...(.(..............(..(........)..)..............).)...)..)
>AAQR03142114.1/15713-15646
UCUCUACUUUAACAUGGAGGCAUUUGCUGUGACAUAACAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(..............(..(.........)....)..............).)...)..)
4 (U()U)
(YN()UN)
(.U.().AA.)
((C)U)Y
 22 50.0
>AAYZ01300380.1/1467-1400
CCUUUGCUUUAACAUGGGGGCACCUGCUGUGUACAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(......(.(......(.(.........)..)......).)......).).)..)...
>CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(......(.(.....(..(.........)..).....).)......).)...)..)
>AALT01320989.1/195-127
CCGCGACUUUAACAUGGAGGCACUUGCUGGGACCUGACCAAAAAUAAGUGCUUCCAUGUUUUAGUGUGG
(..(...(.(.......(.(.....(..(.........).....).....).).......).)..)..)
>AADA01066072.1/27294-27227
CCUUUGCUUUAACAUGGGGGUACCUGCUGUGUGAAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(......(.(......(.(.........)..)......).)......).).)..)...
>AAFR03016534.1/30625-30693
CCUCUGCUUUAACAUGGAAGUGCUUGCUGUGAUUUUAAAAAAUUAAGUGCUUCCAUGUUUGAGUUGUGG
(..(....(.(......(.(.....(...(.........)...).....).)......).)....)..)
>AAPN01081641.1/13679-13747
CUUCUCCUUUAACAUGGAGGUGCUUGCUGUGAGUUUGAAAAAUUAAGUGCUUCCAUGUUUUAGUUGAAG
..(..(.(.(.......(.(.....(...(.........)...).....).).......).).)..)..
>CAAA01211654.1/15470-15538
CCACCACUUAAACGUGGUUGUACUUGCUUUAGACCUAAGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
(..(...(.(......(..(.....(..(.........)....).....).).......).)...)..)
>AAWR02000508.1/11188-11120
CCACCACUUACACAUGGAUGCACUUGCUUUGACACUAAAAAAGGAAGCACUCGCAUGUUUUAAUGAUGG
(..(...(.(.......(.(......(.(.........)...)......).).......).)...)..)
>ADDD01113690.1/5635-5571
CCUCCGCUUUAACAUGGAGGUACCUGCUGCCUACAAAAGUAAGUGCUUCCAUGUUUCAGUGGUGG
(..(....(.(......((....(..(........)...).....).)......).)....)..)
>AALT01320989.1/475-405
CCUUCGCUUUAACACGGGGGGCACUUGCUGUGUGCCCACAGAAGUAAGUGCUUCCUGUGUUUCAGUGGAGG
...(..(.(.(......(.(.....(...(.........).....)....).).......).).)..)...
>CAAA01211654.1/15337-15404
CCUCUGCUUUAACAUGGGGUUACCUGCUGUGUUAAACAAAAGCAAGUGCUUCCAUGUUUCAGUGGGGG
...(..(.(.(......(.(......(.(.........)..)......).)......).).)..)...
>AAIY01685397.1/7173-7105
CCUCUACUCUAACACGGCGGCACUUGCUGUGGCUUUUUGGAAAUUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(......(.(......(...(.........)..)......).)......).)...)..)
>AADN03003749.1/40025-39957
CCUCAACUUUAACAUGGAGGUACUUGCUGGACACCUGAAAAAGUAAGUGCUUCCAUGUUUUAGUUGUGG
(..(...(.(.......((.....(...(..........)....)....).).......).)...)..)
>AAQR03142114.1/15713-15646
UCUCUACUUUAACAUGGAGGCAUUUGCUGUGACAUAACAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(......(.(.....(..(.........)....).....).)......).)...)..)
>AAPY01684075.1/7919-7851
CCACCACUUAAACGUGGGAGUACUUGCUUUAUAACGGGGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
(..(...(.(.......(.(.....(..(..........)...).....).).......).)...)..)
>AADN03003749.1/40360-40294
CCACAACUUAAAUGUGGAUGUGCUUGCUUUGUUCUGAAAAGAAAGUGCUUCCAUGUUUUAGUGAUGG
(..(...(.(.......(.(......(.(........)..)......).).......).)...)..)
>AAGW02021863.1/25249-25316
UCUCUACUUUAACAUGGAGGCACUUGCUGUGCCAUGAUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(......(.(.....(..(.........)....).....).)......).)...)..)
>ABDC01525090.1/901-968
CCUUUGCUUUAACAUGGGGGUACAUGCUGUGUGAAUCAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(......(.(......(.(.........)..)......).)......).).)..)...
>AAHX01020222.1/16186-16122
CCUUCACUUUAACAUGGAGGCCCUCGCUGUGCCUUUAAAAUAAGUGCUUCCAGGUUUGAGUGUGG
.(..(...(.(......(.(.....(..(........)..).....).)......).)...)..)
>AAQQ01250562.1/1745-1679
CCUUUACUUUAACAUGGAGGCACUUGCUGUGACAUGAUAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(......(.(.....(...(.........)..).....).)......).)...)..)
>AAEX03016829.1/107918-107850
CCACCACUUAAACGUGGAUGUACUUGCUUUGAAACUCAAAAAGUAAGUGCUUCCAUGUUUUAGUGAUGG
(..(...(.(.......(.(.....(..(.........)....).....).).......).)...)..)
>AAFR03016534.1/30254-30320
UCUCUGCUUUAACAUGGGGGUACCUGCUACGUAAUAAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGA
...(..(.(.(......(.(......(.(........)..)......).)......).).)..)...
5 (U()U)
(YN()UN)
(.U.().AA.)
((C)U)Y
((C)A)U
 16 36.4
>AAPN01081641.1/13679-13747
CUUCUCCUUUAACAUGGAGGUGCUUGCUGUGAGUUUGAAAAAUUAAGUGCUUCCAUGUUUUAGUUGAAG
..(..(.(.(...(.(.(.(.....(...(.........)...).....).).).)...).).)..)..
>AAFR03016534.1/30254-30320
UCUCUGCUUUAACAUGGGGGUACCUGCUACGUAAUAAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGA
...(..(.(.(..(.(.(.(......(.(........)..)......).).).)..).).)..)...
>CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(..(.(.(.(.....(..(.........)..).....).).).)..).)...)..)
>AAQR03142114.1/15713-15646
UCUCUACUUUAACAUGGAGGCAUUUGCUGUGACAUAACAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(..(.(.(.(.....(..(.........)....).....).).).)..).)...)..)
>AADN03003749.1/40360-40294
CCACAACUUAAAUGUGGAUGUGCUUGCUUUGUUCUGAAAAGAAAGUGCUUCCAUGUUUUAGUGAUGG
(..(...(.(...(.(.(.(......(.(........)..)......).).).)...).)...)..)
>AAEX03016829.1/107918-107850
CCACCACUUAAACGUGGAUGUACUUGCUUUGAAACUCAAAAAGUAAGUGCUUCCAUGUUUUAGUGAUGG
(..(...(.(...(.(.(.(.....(..(.........)....).....).).).)...).)...)..)
>AAGW02021863.1/25249-25316
UCUCUACUUUAACAUGGAGGCACUUGCUGUGCCAUGAUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(..(.(.(.(.....(..(.........)....).....).).).)..).)...)..)
>CAAA01211654.1/15337-15404
CCUCUGCUUUAACAUGGGGUUACCUGCUGUGUUAAACAAAAGCAAGUGCUUCCAUGUUUCAGUGGGGG
...(..(.(.(..(.(.(.(......(.(.........)..)......).).).)..).).)..)...
>AAWR02000508.1/11188-11120
CCACCACUUACACAUGGAUGCACUUGCUUUGACACUAAAAAAGGAAGCACUCGCAUGUUUUAAUGAUGG
(..(...(.(...(.(.(.(......(.(.........)...)......).).).)...).)...)..)
>AAYZ01300380.1/1467-1400
CCUUUGCUUUAACAUGGGGGCACCUGCUGUGUACAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(..(.(.(.(......(.(.........)..)......).).).)..).).)..)...
>ABDC01525090.1/901-968
CCUUUGCUUUAACAUGGGGGUACAUGCUGUGUGAAUCAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(..(.(.(.(......(.(.........)..)......).).).)..).).)..)...
>AALT01320989.1/195-127
CCGCGACUUUAACAUGGAGGCACUUGCUGGGACCUGACCAAAAAUAAGUGCUUCCAUGUUUUAGUGUGG
(..(...(.(...(.(.(.(.....(..(.........).....).....).).).)...).)..)..)
>AAIY01685397.1/7173-7105
CCUCUACUCUAACACGGCGGCACUUGCUGUGGCUUUUUGGAAAUUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(..(.(.(.(......(...(.........)..)......).).).)..).)...)..)
>AADA01066072.1/27294-27227
CCUUUGCUUUAACAUGGGGGUACCUGCUGUGUGAAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
...(..(.(.(..(.(.(.(......(.(.........)..)......).).).)..).).)..)...
>AAFR03016534.1/30625-30693
CCUCUGCUUUAACAUGGAAGUGCUUGCUGUGAUUUUAAAAAAUUAAGUGCUUCCAUGUUUGAGUUGUGG
(..(....(.(..(.(.(.(.....(...(.........)...).....).).).)..).)....)..)
>AAQQ01250562.1/1745-1679
CCUUUACUUUAACAUGGAGGCACUUGCUGUGACAUGAUAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.(..(...(.(..(.(.(.(.....(...(.........)..).....).).).)..).)...)..)

>CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
........(.(.............................................).).......
.(..(...(.(.............................................).)...)..)
.(..(...(.(..............(..(.........)..)..............).)...)..)
.(..(...(.(......(.(.....(..(.........)..).....).)......).)...)..)
.(..(...(.(..(.(.(.(.....(..(.........)..).....).).).)..).)...)..)
>AAIY01685397.1/7173-7105
CCUCUACUCUAACACGGCGGCACUUGCUGUGGCUUUUUGGAAAUUAAGUGCUUCCAUGUUUGAGUGUGG
........(.(................................................).).......
.(..(...(.(................................................).)...)..)
.(..(...(.(...............(...(.........)..)...............).)...)..)
.(..(...(.(......(.(......(...(.........)..)......).)......).)...)..)
.(..(...(.(..(.(.(.(......(...(.........)..)......).).).)..).)...)..)
>AAGW02021863.1/25249-25316
UCUCUACUUUAACAUGGAGGCACUUGCUGUGCCAUGAUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
........(.(...............................................).).......
.(..(...(.(...............................................).)...)..)
.(..(...(.(..............(..(.........)....)..............).)...)..)
.(..(...(.(......(.(.....(..(.........)....).....).)......).)...)..)
.(..(...(.(..(.(.(.(.....(..(.........)....).....).).).)..).)...)..)
>AAYZ01300380.1/1467-1400
CCUUUGCUUUAACAUGGGGGCACCUGCUGUGUACAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
........(.(..............................................).)........
...(..(.(.(..............................................).).)..)...
...(..(.(.(...............(.(.........)..)...............).).)..)...
...(..(.(.(......(.(......(.(.........)..)......).)......).).)..)...
...(..(.(.(..(.(.(.(......(.(.........)..)......).).).)..).).)..)...
>AADN03003749.1/40360-40294
CCACAACUUAAAUGUGGAUGUGCUUGCUUUGUUCUGAAAAGAAAGUGCUUCCAUGUUUUAGUGAUGG
.......(.(...............................................).).......
(..(...(.(...............................................).)...)..)
(..(...(.(................(.(........)..)................).)...)..)
(..(...(.(.......(.(......(.(........)..)......).).......).)...)..)
(..(...(.(...(.(.(.(......(.(........)..)......).).).)...).)...)..)
>AAFR03016534.1/30254-30320
UCUCUGCUUUAACAUGGGGGUACCUGCUACGUAAUAAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGA
........(.(.............................................).)........
...(..(.(.(.............................................).).)..)...
...(..(.(.(...............(.(........)..)...............).).)..)...
...(..(.(.(......(.(......(.(........)..)......).)......).).)..)...
...(..(.(.(..(.(.(.(......(.(........)..)......).).).)..).).)..)...
>AAQR03142114.1/15713-15646
UCUCUACUUUAACAUGGAGGCAUUUGCUGUGACAUAACAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
........(.(...............................................).).......
.(..(...(.(...............................................).)...)..)
.(..(...(.(..............(..(.........)....)..............).)...)..)
.(..(...(.(......(.(.....(..(.........)....).....).)......).)...)..)
.(..(...(.(..(.(.(.(.....(..(.........)....).....).).).)..).)...)..)
>AAEX03016829.1/107918-107850
CCACCACUUAAACGUGGAUGUACUUGCUUUGAAACUCAAAAAGUAAGUGCUUCCAUGUUUUAGUGAUGG
.......(.(.................................................).).......
(..(...(.(.................................................).)...)..)
(..(...(.(...............(..(.........)....)...............).)...)..)
(..(...(.(.......(.(.....(..(.........)....).....).).......).)...)..)
(..(...(.(...(.(.(.(.....(..(.........)....).....).).).)...).)...)..)
>AAWR02000508.1/11188-11120
CCACCACUUACACAUGGAUGCACUUGCUUUGACACUAAAAAAGGAAGCACUCGCAUGUUUUAAUGAUGG
.......(.(.................................................).).......
(..(...(.(.................................................).)...)..)
(..(...(.(................(.(.........)...)................).)...)..)
(..(...(.(.......(.(......(.(.........)...)......).).......).)...)..)
(..(...(.(...(.(.(.(......(.(.........)...)......).).).)...).)...)..)
>AADA01066072.1/27294-27227
CCUUUGCUUUAACAUGGGGGUACCUGCUGUGUGAAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
........(.(..............................................).)........
...(..(.(.(..............................................).).)..)...
...(..(.(.(...............(.(.........)..)...............).).)..)...
...(..(.(.(......(.(......(.(.........)..)......).)......).).)..)...
...(..(.(.(..(.(.(.(......(.(.........)..)......).).).)..).).)..)...
>AAQQ01250562.1/1745-1679
CCUUUACUUUAACAUGGAGGCACUUGCUGUGACAUGAUAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
........(.(..............................................).).......
.(..(...(.(..............................................).)...)..)
.(..(...(.(..............(...(.........)..)..............).)...)..)
.(..(...(.(......(.(.....(...(.........)..).....).)......).)...)..)
.(..(...(.(..(.(.(.(.....(...(.........)..).....).).).)..).)...)..)
>CAAA01211654.1/15337-15404
CCUCUGCUUUAACAUGGGGUUACCUGCUGUGUUAAACAAAAGCAAGUGCUUCCAUGUUUCAGUGGGGG
........(.(..............................................).)........
...(..(.(.(..............................................).).)..)...
...(..(.(.(...............(.(.........)..)...............).).)..)...
...(..(.(.(......(.(......(.(.........)..)......).)......).).)..)...
...(..(.(.(..(.(.(.(......(.(.........)..)......).).).)..).).)..)...
>AAPN01081641.1/13679-13747
CUUCUCCUUUAACAUGGAGGUGCUUGCUGUGAGUUUGAAAAAUUAAGUGCUUCCAUGUUUUAGUUGAAG
........(.(...............................................).)........
..(..(.(.(.................................................).).)..)..
..(..(.(.(...............(...(.........)...)...............).).)..)..
..(..(.(.(.......(.(.....(...(.........)...).....).).......).).)..)..
..(..(.(.(...(.(.(.(.....(...(.........)...).....).).).)...).).)..)..
>ABDC01525090.1/901-968
CCUUUGCUUUAACAUGGGGGUACAUGCUGUGUGAAUCAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGG
........(.(..............................................).)........
...(..(.(.(..............................................).).)..)...
...(..(.(.(...............(.(.........)..)...............).).)..)...
...(..(.(.(......(.(......(.(.........)..)......).)......).).)..)...
...(..(.(.(..(.(.(.(......(.(.........)..)......).).).)..).).)..)...
>AAFR03016534.1/30625-30693
CCUCUGCUUUAACAUGGAAGUGCUUGCUGUGAUUUUAAAAAAUUAAGUGCUUCCAUGUUUGAGUUGUGG
........(.(...............................................).)........
(..(....(.(...............................................).)....)..)
(..(....(.(..............(...(.........)...)..............).)....)..)
(..(....(.(......(.(.....(...(.........)...).....).)......).)....)..)
(..(....(.(..(.(.(.(.....(...(.........)...).....).).).)..).)....)..)
>AALT01320989.1/195-127
CCGCGACUUUAACAUGGAGGCACUUGCUGGGACCUGACCAAAAAUAAGUGCUUCCAUGUUUUAGUGUGG
........(.(................................................).).......
(..(...(.(..................................................).)..)..)
(..(...(.(...............(..(.........).....)...............).)..)..)
(..(...(.(.......(.(.....(..(.........).....).....).).......).)..)..)
(..(...(.(...(.(.(.(.....(..(.........).....).....).).).)...).)..)..)
>CAAA01211654.1/15470-15538
CCACCACUUAAACGUGGUUGUACUUGCUUUAGACCUAAGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
.......(.(.................................................).).......
(..(...(.(.................................................).)...)..)
(..(...(.(...............(..(.........)....)...............).)...)..)
(..(...(.(......(..(.....(..(.........)....).....).).......).)...)..)
>ADDD01113690.1/5635-5571
CCUCCGCUUUAACAUGGAGGUACCUGCUGCCUACAAAAGUAAGUGCUUCCAUGUUUCAGUGGUGG
........(.(...........................................).)........
(..(....(.(...........................................).)....)..)
(..(....(.(............(..(........)...)..............).)....)..)
(..(....(.(......((....(..(........)...).....).)......).)....)..)
>AAHX01020222.1/16186-16122
CCUUCACUUUAACAUGGAGGCCCUCGCUGUGCCUUUAAAAUAAGUGCUUCCAGGUUUGAGUGUGG
........(.(............................................).).......
.(..(...(.(............................................).)...)..)
.(..(...(.(..............(..(........)..)..............).)...)..)
.(..(...(.(......(.(.....(..(........)..).....).)......).)...)..)
>AAPY01684075.1/7919-7851
CCACCACUUAAACGUGGGAGUACUUGCUUUAUAACGGGGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
.......(.(.................................................).).......
(..(...(.(.................................................).)...)..)
(..(...(.(...............(..(..........)...)...............).)...)..)
(..(...(.(.......(.(.....(..(..........)...).....).).......).)...)..)
>AALT01320989.1/475-405
CCUUCGCUUUAACACGGGGGGCACUUGCUGUGUGCCCACAGAAGUAAGUGCUUCCUGUGUUUCAGUGGAGG
........(.(................................................).).........
...(..(.(.(.................................................).).)..)...
...(..(.(.(..............(...(.........).....)..............).).)..)...
...(..(.(.(......(.(.....(...(.........).....)....).).......).).)..)...
>AADN03003749.1/40025-39957
CCUCAACUUUAACAUGGAGGUACUUGCUGGACACCUGAAAAAGUAAGUGCUUCCAUGUUUUAGUUGUGG
........(.(...............................................).)........
(..(...(.(.................................................).)...)..)
(..(...(.(..............(...(..........)....)..............).)...)..)
(..(...(.(.......((.....(...(..........)....)....).).......).)...)..)
>AAFC03065343.1/37046-36982
UCACCACCUAACCUGGGAAGCGCUUGCUUUGAAACUAUUAAAGUGCUUCCAUGUUUUUGUGGUGA
.......(.(..............................................).)......
(..(...(.(.............................................).)...)..)
(..(...(.(.............(.(.........).....).............).)...)..)
>AAGV021030223.1/1436-1370
CCUCUACUUUACAUUGGAAGCACUGCUGUGAGCUAUUUUAUUAAGUGCUUCCCAUGUUUGAGUGUGG
.......(.(...............................................).).......
(..(...(.(...............................................).)...)..)
(..(...(.(............(...(............)....)............).)...)..)
>AAWZ02004954.1/27325-27392
CCACUACUUUAAUAUGAAAGUACUUGUUUUUGUUCCUUUUAAAAAGUGCUUUCAUAUUUUAGUGAUGG
........(.(...............................................).).......
(..(...(.(................................................).)...)..)
(..(...(.(...............(...(.........)..)...............).)...)..)
>AAPN01081641.1/13571-13636
CUGUCACUUAAACGUGGAUAAACUUGCUUUACUUUUAAAGUAAGUGCUUCCAUGUUUUAGUGAUGG
.......(.(..............................................).).......
(..(...(.(..............................................).)...)..)
(..(...(.(................(.(.......)..)................).)...)..)
>AAFR03016534.1/30106-30172
CUUCUACUUUAACAUGGAGGUACUUUCUGUGUUUAAAAAGGUAAGUGCUUCCAUGUUUUGGUAGGAG
.......(.(...............................................).).......
...(..(.(.(.............................................).).)..)...
...(..(.(.(...............(.(.......)...)...............).).)..)...
>AANN01821362.1/2160-2092
CCACCACUUUAACAUGGAGGCGCUUGCUGUAUCAUCUUAAGAAUAAGUGCUUCCAUGUUUUAGUGUUGG
........(.(...............................................).)........
(..(...(.(.................................................).)...)..)
(..(...(.(...............(...(.........)...)...............).)...)..)
>AAIY01685397.1/7598-7532
CUUGGACUUUAACAAGGAGGCCCUUUUACUACUUAAAAAAGUAAGUGCUUCCUUGUUUUAGUAAAAG
.......(.(...............................................).).......
...................(..(.(.(.............).).)..)...................
>CAAA01211654.1/15207-15274
CUUCAACUUUAACAUGGGAAUGCUUUCUGUCUCAUCGAAGAGUAAGUGCUUCCAUGUUUUAGUAGAAG
........(.(...............................................).).......
...................(..(.(.(..............).).)..)...................
>AANN01821362.1/2593-2523
CUUUAACUUUAAUGUGGAAGUGCUUUCUGUGAUUCUAAAAUAUAGUAAGUGCUUCCAUGUUUUAGUGUAAG
........(.(.................................................).)........
...................(..(.(.(.................).).)..)...................
>AADD01049814.1/10290-10224
CUUCAACUUUAACAUGGAAGUGCUUUCUGUGACUUUAAAAGUAAGUGCUUCCAUGUUUUAGUAGGAG
.......(.(...............................................).).......
...................(..(.(.(.............).).)..)...................
>AAHY01031685.1/1176-1109
CUUCAACUUUAACAUGGGAAUGCUUUCUGUCUCAUCUAAGAGUAAGUGCUUCCAUGUUUUAGUAGAAG
.......(.(................................................).).......
...................(..(.(.(..............).).)..)...................
>AAPY01419152.1/185-114
CUUUGACUUUAACAUGGAGGUACUCUCUGUGCCUUUUUAGAAAGAGUAAGUGCUUCCAUGUUUUAGUGGAAG
........(.(..................................................).)........
...................(..(.(.(..................).).)..)...................
>AADN03003749.1/40923-40855
CUUUUACUUUAACAUGGAGGUGCUUUCUGUGAUUUUACAAAAGUAAGUGCUUCCAUGUUUUAGUAGAGG
........(.(...............................................).)........
...................(..(.(.(...............).).)..)...................
>AAGU03033948.1/13326-13257
CUUUGACUUUAACAAGGAGGUCCUUUCUGCUAUUUGUAAAAAAGUAAGUGCUUCCUUGUUUUAGUAGAAG
........(.(................................................).)........
...................(..(.(.(................).).)..)...................
>AANU01270256.1/2613-2682
CUUCAACUUUAACAUGGAAGUGCUUUCUGUGACUUUAAAAUAAGUAAGUGCUUCCAUGUUUUAGUAGGAG
........(.(................................................).)........
...................(..(.(.(................).).)..)...................
>AAIY01685397.1/7477-7410
CCUUUGCUUUAACAUGGGAGUACCUGCUGUGCAAAAUGAAAGUAAGUGCUUCCAUGUUUCAGCGGAGG
........(.(..............................................).)........
>AALT01320989.1/607-537
CUUUGACUUUAACAUGGGAGUGCUUUUCUGUGUGUUCUCAGAGAGUAAGUGCUUCCAUGUUUGAGUAGAAG
........(.(.................................................).)........
>AAWR02036366.1/23003-22935
CCACCACUUAAAUGUGGGUGUUCUUGCUUUGAAAUUAAAAAAGAAAGUACUUCCAUACUUUAGAGAUGG
.......(.(.................................................).).......

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (U()U) < 0.001 10.4
CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.........1.........2.........3.........4.........5.........6......
123456789012345678901234567890123456789012345678901234567890123456
2 (YN()UN) < 0.001 21.7
CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.........1.........2.........3.........4.........5.........6......
123456789012345678901234567890123456789012345678901234567890123456
3 (.U.().AA.) < 0.001 6.63
CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.........1.........2.........3.........4.........5.........6......
123456789012345678901234567890123456789012345678901234567890123456
4 ((C)U)Y < 0.001 2.19
CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.........1.........2.........3.........4.........5.........6......
123456789012345678901234567890123456789012345678901234567890123456
5 ((C)A)U < 0.001 1.33
CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.........1.........2.........3.........4.........5.........6......
123456789012345678901234567890123456789012345678901234567890123456
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 (U()U) < 0.001 10.4
CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.........1.........2.........3.........4.........5.........6......
123456789012345678901234567890123456789012345678901234567890123456
2 Y(YU(A)) < 0.001 18.3
CAAA01211654.1/15598-15663
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
CCUUUACUUUAACAUGGAGGCACUUGCUGUGCAUUUAAAAAUAAGUGCUUCCAUGUUUGAGUGUGG
.........1.........2.........3.........4.........5.........6......
123456789012345678901234567890123456789012345678901234567890123456
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).