D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

algC RNA (Rfam: RF02929)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

G(AAR)A
((G)UN)R
((R)G)G
A(NUR)U

97.8
98.9
100.0
82.2

G(AAR)A
((R)G)G
A(NUR)U

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 99.8 %
(± 0.193 %)

Decision tree:

5-fold cross-validation: 91 %
(± 4.62 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 95.5 %
(± 1.37 %)

of URS0000D6C4C3_1281120/1-50

URS0000D6C4C3_1281120/1-50

ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA
.....(.((((((((..))..).))))((...))(((((...))).))))
.........1.........2.........3.........4.........5
12345678901234567890123456789012345678901234567890

abstract shape: `()()`

					Number of sequences
	Structure	ORBs			(out of 90)	(%)
1		G(AAR)A			88	97.8
>URS0000D6C66B_742730/1-50 AAAAAUAUCUCCAUUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGUAA ......................................(...)....... >URS0000D6CDF4_1235834/1-53 CAAGAUAUGGCCAUUUUACGGUCACGGCUGACUGUUGCCUGAAGAAGAGGUAA ........................................(...)........ >URS0000D6B7F9_1006003/1-52 CAUUAAAAGGCUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ........................................(...)....... >URS0000D6C14C_1124929/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... >URS0000D6973C_1124936/1-51 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... >URS0000D680CE_12908/1-52 AUUAAAAAGGCUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ........................................(...)....... >URS0000D6AD33_1173951/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGAUAA .......................................(...)....... >URS0000D69ED4_12908/1-51 AAAAUCAUGACCCUCACCGGUCAGGGAUAACCGUUGCCUGAAGAAAGGUAA .......................................(...)....... >URS0000D687FB_1240348/1-52 ACGAUUUUGGCCAUUUACGGUCAGGGUCAACUGUUGCCUGAAGAAGGGGACG .......................................(...)........ >URS0000D6C4C3_1281120/1-50 ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D6CFBB_1182738/1-50 AAAUUGAUGGCCAUAACGGUCAGGGCGAACUGUUGCCUGAAGAAAGGUAA ......................................(...)....... >URS0000D66E3C_1078775/1-51 ACGAUUCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... >URS0000D65A94_913069/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAAGGUAA .......................................(...)....... >URS0000D696E2_1212561/1-51 ACGAUGUUGGCCAUUUGCGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... >URS0000D699FE_12908/1-51 AUGAAUAAGGCCCAUUUGGGUCAGGGCUGACUGCUGCCUGAAAAAGGGUAA .......................................(...)....... >URS0000D666B0_12908/1-50 AAUAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D6C770_12908/1-52 UAAUUUUUGGCCACUUUCUGGUCAGGGCCGACUGUUGCCUGAAGAAGGGUAA ........................................(...)....... >URS0000D6CA92_12908/1-54 UUGAAAAAGGCUCUUACGAGAGUCAGGGGCCAACUGUUGCCUGAAGAAGGGUAA ..........................................(...)....... >URS0000D69494_550677/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGGAAAAGGGUAA .......................................(...)...... >URS0000D69C13_1281189/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D68972_1116087/1-50 ACAAAAUUGGCCGCUUCGGUCAUGGCCGAGUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D65994_1173948/1-52 ACGAUUUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGGACG .......................................(...)........ >URS0000D6AF7C_500640/1-52 CAUUAAAAGACUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGAUAA ........................................(...)....... >URS0000D68CD1_1314885/1-51 ACGAUGUUGGCCACUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... >URS0000D68B03_1182659/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAU ......................................(...)....... >URS0000D6A0A9_1173950/1-51 ACGAUUCAGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... >URS0000D663AB_1116017/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCGACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D68EBE_637910/1-52 ACAAAUUUGGCCGUUUCACGGUCAGGGCUGACUGUUGCCUGAAGAAGGGUAA ........................................(...)....... >URS0000D6CEB2_12908/1-51 AAAAUCAUGACCCUCACCGGUCAGGGCUAACUGCUGCCUGAAGAAAGGUAA .......................................(...)....... >URS0000D6912E_1116117/1-50 ACAAAAUUGGCCGCUUCGGUCAUGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D6C2EF_12908/1-49 AUAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAGGGUAA ......................................(...)...... >URS0000D6A59B_12908/1-52 CAUUAAAAGGCUCAUUAAGGGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ........................................(...)....... >URS0000D69B8A_882884/1-50 UGAAAAUUCUCCUUCCAGGAGAGGGCCAACUGUUGCCUGAAGAAGGGUAA .(...)............................................ >URS0000D69F5D_1212554/1-52 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGGAAG .......................................(...)........ >URS0000D69DA4_596155/1-51 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUAUUGCCUGAAGAAGGGUAA .......................................(...)....... >URS0000D6C54F_1182700/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCUAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D66B58_585054/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCCACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D65A71_754091/1-50 ACAAAAUUGGUCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D68D66_1281275/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGACAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D6B446_12908/1-51 AAAAUGAUGACCGUUACCGGUCAGGGCCUGCUGUUGCCUGAAAAAGGGUAA .......................................(...)....... >URS0000D6CCAA_12908/1-51 AAAAUAAUGACCCUCACCGGUCAGGGCCAACUGUUGCCUGAAGAAAGGUAA .......................................(...)....... >URS0000D6B300_1116095/1-50 AUAAAAUUGGCCGCUUCGGUAAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D6BC21_1169347/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGAGUAA ......................................(...)....... >URS0000D68FD7_1281157/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAUGGUAA ......................................(...)....... >URS0000D6AF2F_766138/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAAGGUAA ......................................(...)....... >URS0000D6D1C3_1280958/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D672B8_670484/1-51 AAAAAUAUCUCCAGUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGGAAA ......................................(...)........ >URS0000D66F85_656449/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAAUUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D66CC5_1169350/1-50 AAAAAUAUCUCCAGUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGUAA ......................................(...)....... >URS0000D6BFE4_701347/1-55 CCAAUUAUGGCCUCGGCAGCGGGUCAGGGCCGACUGCUGCCUGAAGAAGGGGAUA ..........................................(...)........ >URS0000D687E9_1086030/1-50 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D6D2A4_754333/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGUCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D65CD9_1281153/1-50 AUAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... >URS0000D6CEAD_12908/1-50 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAC ......................................(...)....... >URS0000D6CF0B_12908/1-51 AAAAAUUUGGUCAUUUCUGGCCAGGGCCAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... >URS0000D6A388_399742/1-52 AAUAAAAUCUCCUGAACAGGAGAGGGCCGACUGUUGCCUGAAAAAGGGAUCA .......................................(...)........ >URS0000D6D09C_1002368/1-51 CAAAAAAUGGCCUUGCAUGGUCAGGGCCUCCUGUUGCCUGAAAAAGGGUAA .......................................(...)....... >URS0000D6D194_290338/1-53 UUGAAAAAGGCUCUUACGAGAGUCAGGGCCAACUGUUGCCUGAAGAAGGGUAA .........................................(...)....... >URS0000D6A44B_1177180/1-53 UAACAAAUGGCCAUUUUACGGUCAAGGCUGACUGUUGCCUUAAGAAGAGGUAA ...........................................(...)..... >URS0000D6C71F_1182709/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCUUGAAAAAGGGUAA ......................................(...)....... >URS0000D6D22E_12908/1-54 AAUGGACUGGCCUGCCUGGCAGGCCCUGGCUGACUGUUGCCUGAAGAAGGGUAA ..........................................(...)....... >URS0000D68241_1312879/1-52 AAUAUAUUGCCUGUUAAUUGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .......................................(...)........ >URS0000D66608_12908/1-52 ACAAAUUUGCCUGUUAAUCGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .......................................(...)........ >URS0000D6C02B_716541/1-52 AAUAUUUUGCCUGUUAAUUGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .......................................(...)........ >URS0000D6A954_12908/1-53 AUUAAUUUGGCCAUUUAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ >URS0000D68D51_500639/1-53 AUAAAUUUGGCCAUUACGUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ >URS0000D672C0_980518/1-53 AAGAAUUUGGCCAUUAAUUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ >URS0000D67D4D_1281273/1-50 GAAAAAAUGGCCAUUUUGGUCAGGGCCAACUGUUGCCUGAAGAAGGGUAA ......................................(...)....... >URS0000D6B46A_12908/1-53 AUGAAUUUGGCCAUUUAGUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ >URS0000D68625_12908/1-53 AUAAAUUUGGCCAUUACAUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ >URS0000D6A0D6_718254/1-53 AUUAAUUUGGCCAUUACAUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ >URS0000D6736E_1329856/1-53 AUUAAUUCGGCCAUUUAGUGGUCAGGACCGACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ >URS0000D672D4_556266/1-51 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGGUAA ......................................(...)........ >URS0000D6B3D6_1173805/1-51 ACGAUGUUGGCCAUUUAUGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... >URS0000D6C865_1329830/1-51 ACAAUUAAGCCUGUUAACGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA ......................................(...)........ >URS0000D6B5A3_12908/1-53 AUCAAUUUGGCCAUUUAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ >URS0000D67249_1329845/1-53 AUCAAUUUGGCCAUUAAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ >URS0000D6988E_1334630/1-53 AUUAAUUUGGCCAUUUAGUGGUCAGGACCGACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ >URS0000D6BB6A_12908/1-52 ACAAUUUUGCCUGUUAAUCGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .......................................(...)........ >URS0000D66E17_12908/1-52 AUCAAUUUGGCUAUUUAGUGGCCAGGGCCAACUGUUGCCUGAAAAAGGGGUC ........................................(...)....... >URS0000D6CEDA_218493/1-51 ACGAUUUUGGCCAUUUACGGUCAGGGCCGACUGUUGCCUGAAAAAGGGUAA .......................................(...)....... >URS0000D6B693_12908/1-51 CAAAAUUUCUCCGUUCCGGAGAGGGCUGAGUGUUGCCUGAAAACGAGGUAA ......................................(...)........ >URS0000D6BD95_12908/1-50 AAAAAUAUCUCCAGUCCGGAGAGGGCUAACUGUUGCCUGAAGAAGGGUAA ......................................(...)....... >URS0000D6D3EB_1173780/1-51 ACGAUUUUGGCCAUUUACGGCCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... >URS0000D6A8B8_12908/1-51 AAAAUAAUGACCCUCACCGGUCAGGGCUAACUGCUGCCUGAAGAAAGGUAA .......................................(...)....... >URS0000D65FD2_12908/1-53 UAACAAAUGGCCAUUUUACGGUCAAGGCUGACUGUUGCCUGAAGAAGAGGUAA ........................................(...)........ >URS0000D6C28E_12908/1-52 AUUUAUGUGGCCAGUUGCGGUCAAGGCUGACUGUUGCCUGAAGAAGAGGUAA .......................................(...)........ >URS0000D6660F_997330/1-51 ACGAUGUUGGCUAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...).......
2		G(AAR)A ((G)UN)R			82	91.1
>URS0000D6C2EF_12908/1-49 AUAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAGGGUAA ............((....)..)................(...)...... >URS0000D6C770_12908/1-52 UAAUUUUUGGCCACUUUCUGGUCAGGGCCGACUGUUGCCUGAAGAAGGGUAA ..............((....)..)................(...)....... >URS0000D672B8_670484/1-51 AAAAAUAUCUCCAGUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGGAAA ...................(.(.........)..)...(...)........ >URS0000D6BC21_1169347/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGAGUAA ............((....)..)................(...)....... >URS0000D6C14C_1124929/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)................(...)....... >URS0000D68B03_1182659/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAU ............((....)..)................(...)....... >URS0000D6CEAD_12908/1-50 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAC ............((....)..)................(...)....... >URS0000D6B300_1116095/1-50 AUAAAAUUGGCCGCUUCGGUAAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D6912E_1116117/1-50 ACAAAAUUGGCCGCUUCGGUCAUGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D66E3C_1078775/1-51 ACGAUUCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)................(...)....... >URS0000D66F85_656449/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAAUUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D6973C_1124936/1-51 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)................(...)....... >URS0000D68972_1116087/1-50 ACAAAAUUGGCCGCUUCGGUCAUGGCCGAGUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D68EBE_637910/1-52 ACAAAUUUGGCCGUUUCACGGUCAGGGCUGACUGUUGCCUGAAGAAGGGUAA .............(.(....)..)................(...)....... >URS0000D6AD33_1173951/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGAUAA .............((....)..)................(...)....... >URS0000D65A94_913069/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAAGGUAA .............((....)..)................(...)....... >URS0000D6AF7C_500640/1-52 CAUUAAAAGACUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGAUAA ...........................((....)..)...(...)....... >URS0000D69F5D_1212554/1-52 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGGAAG .............((....)..)................(...)........ >URS0000D6D2A4_754333/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGUCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D6C54F_1182700/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCUAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D6A954_12908/1-53 AUUAAUUUGGCCAUUUAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA .............((.....)..)................(...)........ >URS0000D6B3D6_1173805/1-51 ACGAUGUUGGCCAUUUAUGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)................(...)....... >URS0000D6B5A3_12908/1-53 AUCAAUUUGGCCAUUUAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA .............((.....)..)................(...)........ >URS0000D687E9_1086030/1-50 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D65994_1173948/1-52 ACGAUUUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGGACG .............((....)..)................(...)........ >URS0000D6AF2F_766138/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAAGGUAA ............((....)..)................(...)....... >URS0000D68241_1312879/1-52 AAUAUAUUGCCUGUUAAUUGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .......((...)..).......................(...)........ >URS0000D67D4D_1281273/1-50 GAAAAAAUGGCCAUUUUGGUCAGGGCCAACUGUUGCCUGAAGAAGGGUAA .............((...)..)................(...)....... >URS0000D6B7F9_1006003/1-52 CAUUAAAAGGCUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ..............((....)..)................(...)....... >URS0000D6CF0B_12908/1-51 AAAAAUUUGGUCAUUUCUGGCCAGGGCCAACUGUUGCCUGAAGAAGGGUAA ..........................((....)..)...(...)....... >URS0000D6CEDA_218493/1-51 ACGAUUUUGGCCAUUUACGGUCAGGGCCGACUGUUGCCUGAAAAAGGGUAA .............((....)..)................(...)....... >URS0000D6A0A9_1173950/1-51 ACGAUUCAGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)................(...)....... >URS0000D6660F_997330/1-51 ACGAUGUUGGCUAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)................(...)....... >URS0000D6C4C3_1281120/1-50 ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D696E2_1212561/1-51 ACGAUGUUGGCCAUUUGCGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)................(...)....... >URS0000D6B46A_12908/1-53 AUGAAUUUGGCCAUUUAGUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............((.....)..)................(...)........ >URS0000D6C71F_1182709/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCUUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D67249_1329845/1-53 AUCAAUUUGGCCAUUAAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA .............((.....)..)................(...)........ >URS0000D666B0_12908/1-50 AAUAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D663AB_1116017/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCGACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D680CE_12908/1-52 AUUAAAAAGGCUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ..............((....)..)................(...)....... >URS0000D672D4_556266/1-51 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGGUAA ............((....)..)................(...)........ >URS0000D687FB_1240348/1-52 ACGAUUUUGGCCAUUUACGGUCAGGGUCAACUGUUGCCUGAAGAAGGGGACG .............((....)..)................(...)........ >URS0000D69494_550677/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGGAAAAGGGUAA ............((....)..).................(...)...... >URS0000D672C0_980518/1-53 AAGAAUUUGGCCAUUAAUUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............(.(....)..)................(...)........ >URS0000D6B446_12908/1-51 AAAAUGAUGACCGUUACCGGUCAGGGCCUGCUGUUGCCUGAAAAAGGGUAA ..........................((....)..)...(...)....... >URS0000D69C13_1281189/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D6D3EB_1173780/1-51 ACGAUUUUGGCCAUUUACGGCCAGGGCUAACUGUUGCCUGAAGAAGGGUAA ....................(.(.........)..)...(...)....... >URS0000D6CFBB_1182738/1-50 AAAUUGAUGGCCAUAACGGUCAGGGCGAACUGUUGCCUGAAGAAAGGUAA .............((...)..)................(...)....... >URS0000D66E17_12908/1-52 AUCAAUUUGGCUAUUUAGUGGCCAGGGCCAACUGUUGCCUGAAAAAGGGGUC ..........(.(....)..)...................(...)....... >URS0000D6A8B8_12908/1-51 AAAAUAAUGACCCUCACCGGUCAGGGCUAACUGCUGCCUGAAGAAAGGUAA .............((....)..)................(...)....... >URS0000D6CEB2_12908/1-51 AAAAUCAUGACCCUCACCGGUCAGGGCUAACUGCUGCCUGAAGAAAGGUAA .............((....)..)................(...)....... >URS0000D68D66_1281275/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGACAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D66CC5_1169350/1-50 AAAAAUAUCUCCAGUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGUAA ...................(.(.........)..)...(...)....... >URS0000D6C28E_12908/1-52 AUUUAUGUGGCCAGUUGCGGUCAAGGCUGACUGUUGCCUGAAGAAGAGGUAA .............((....)..)................(...)........ >URS0000D68CD1_1314885/1-51 ACGAUGUUGGCCACUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)................(...)....... >URS0000D6736E_1329856/1-53 AUUAAUUCGGCCAUUUAGUGGUCAGGACCGACUGUUGCCUGAAAAAGGGGUCA ........(.(.........)..)................(...)........ >URS0000D6CCAA_12908/1-51 AAAAUAAUGACCCUCACCGGUCAGGGCCAACUGUUGCCUGAAGAAAGGUAA .............((....)..)................(...)....... >URS0000D6CDF4_1235834/1-53 CAAGAUAUGGCCAUUUUACGGUCACGGCUGACUGUUGCCUGAAGAAGAGGUAA ......................(.(........)..)...(...)........ >URS0000D68D51_500639/1-53 AUAAAUUUGGCCAUUACGUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............(.(....)..)................(...)........ >URS0000D6988E_1334630/1-53 AUUAAUUUGGCCAUUUAGUGGUCAGGACCGACUGUUGCCUGAAAAAGGGGUCA ..........((.....)..)...................(...)........ >URS0000D6D09C_1002368/1-51 CAAAAAAUGGCCUUGCAUGGUCAGGGCCUCCUGUUGCCUGAAAAAGGGUAA .............(.(...)..)................(...)....... >URS0000D6A59B_12908/1-52 CAUUAAAAGGCUCAUUAAGGGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ..............((....)..)................(...)....... >URS0000D6D22E_12908/1-54 AAUGGACUGGCCUGCCUGGCAGGCCCUGGCUGACUGUUGCCUGAAGAAGGGUAA .......................(.(.........)..)...(...)....... >URS0000D68FD7_1281157/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAUGGUAA ............((....)..)................(...)....... >URS0000D6C02B_716541/1-52 AAUAUUUUGCCUGUUAAUUGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA ......((....)..).......................(...)........ >URS0000D6D194_290338/1-53 UUGAAAAAGGCUCUUACGAGAGUCAGGGCCAACUGUUGCCUGAAGAAGGGUAA .............(..(....)..)................(...)....... >URS0000D66B58_585054/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCCACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D6A44B_1177180/1-53 UAACAAAUGGCCAUUUUACGGUCAAGGCUGACUGUUGCCUUAAGAAGAGGUAA ..............((....)..)...................(...)..... >URS0000D6C66B_742730/1-50 AAAAAUAUCUCCAUUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGUAA ...................(.(.........)..)...(...)....... >URS0000D6C865_1329830/1-51 ACAAUUAAGCCUGUUAACGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .....((.....)..)......................(...)........ >URS0000D6CA92_12908/1-54 UUGAAAAAGGCUCUUACGAGAGUCAGGGGCCAACUGUUGCCUGAAGAAGGGUAA ..............(.(....)..).................(...)....... >URS0000D66608_12908/1-52 ACAAAUUUGCCUGUUAAUCGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA ......((....)..).......................(...)........ >URS0000D69DA4_596155/1-51 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUAUUGCCUGAAGAAGGGUAA .............((....)..)................(...)....... >URS0000D68625_12908/1-53 AUAAAUUUGGCCAUUACAUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............(.(....)..)................(...)........ >URS0000D65FD2_12908/1-53 UAACAAAUGGCCAUUUUACGGUCAAGGCUGACUGUUGCCUGAAGAAGAGGUAA ..............((....)..)................(...)........ >URS0000D69B8A_882884/1-50 UGAAAAUUCUCCUUCCAGGAGAGGGCCAACUGUUGCCUGAAGAAGGGUAA .........................((....)..)...(...)....... >URS0000D6A0D6_718254/1-53 AUUAAUUUGGCCAUUACAUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............(.(....)..)................(...)........ >URS0000D65A71_754091/1-50 ACAAAAUUGGUCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D6BB6A_12908/1-52 ACAAUUUUGCCUGUUAAUCGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA ......((....)..).......................(...)........ >URS0000D6D1C3_1280958/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...)....... >URS0000D65CD9_1281153/1-50 AUAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)................(...).......
3		G(AAR)A ((G)UN)R ((R)G)G			70	77.8
>URS0000D6A0A9_1173950/1-51 ACGAUUCAGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..).............((.(...).).)... >URS0000D68D51_500639/1-53 AUAAAUUUGGCCAUUACGUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............(.(....)..).............((.(...).).).... >URS0000D6D194_290338/1-53 UUGAAAAAGGCUCUUACGAGAGUCAGGGCCAACUGUUGCCUGAAGAAGGGUAA .............(..(....)..).............((.(...).).)... >URS0000D6C2EF_12908/1-49 AUAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAGGGUAA ............((....)..).............((.(...)).)... >URS0000D68972_1116087/1-50 ACAAAAUUGGCCGCUUCGGUCAUGGCCGAGUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D6C4C3_1281120/1-50 ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D68625_12908/1-53 AUAAAUUUGGCCAUUACAUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............(.(....)..).............((.(...).).).... >URS0000D6CEAD_12908/1-50 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAC ............((....)..).............((.(...).).)... >URS0000D6D22E_12908/1-54 AAUGGACUGGCCUGCCUGGCAGGCCCUGGCUGACUGUUGCCUGAAGAAGGGUAA .......................(.(.........)..).(((...)).).... >URS0000D6B446_12908/1-51 AAAAUGAUGACCGUUACCGGUCAGGGCCUGCUGUUGCCUGAAAAAGGGUAA ..........................((....)..).(((...)).).... >URS0000D6CEDA_218493/1-51 ACGAUUUUGGCCAUUUACGGUCAGGGCCGACUGUUGCCUGAAAAAGGGUAA .............((....)..).............((.(...).).)... >URS0000D6A0D6_718254/1-53 AUUAAUUUGGCCAUUACAUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............(.(....)..).............((.(...).).).... >URS0000D65A71_754091/1-50 ACAAAAUUGGUCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D6D1C3_1280958/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D69DA4_596155/1-51 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUAUUGCCUGAAGAAGGGUAA .............((....)..).............((.(...).).)... >URS0000D6912E_1116117/1-50 ACAAAAUUGGCCGCUUCGGUCAUGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D6D2A4_754333/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGUCAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D680CE_12908/1-52 AUUAAAAAGGCUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ..............((....)..).............((.(...).).)... >URS0000D65A94_913069/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAAGGUAA .............((....)..).............(.((...).).)... >URS0000D68D66_1281275/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGACAACUAUUGCCUGAAAAAGGGUAA .............((...)..).............((.(...).).)... >URS0000D6B5A3_12908/1-53 AUCAAUUUGGCCAUUUAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA ...........................((....)..)((.(...)).)..... >URS0000D6C770_12908/1-52 UAAUUUUUGGCCACUUUCUGGUCAGGGCCGACUGUUGCCUGAAGAAGGGUAA ..............((....)..).............((.(...).).)... >URS0000D66E3C_1078775/1-51 ACGAUUCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..).............((.(...).).)... >URS0000D6B3D6_1173805/1-51 ACGAUGUUGGCCAUUUAUGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..).............((.(...).).)... >URS0000D6D09C_1002368/1-51 CAAAAAAUGGCCUUGCAUGGUCAGGGCCUCCUGUUGCCUGAAAAAGGGUAA .............(.(...)..).............((.(...).).)... >URS0000D666B0_12908/1-50 AAUAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D67D4D_1281273/1-50 GAAAAAAUGGCCAUUUUGGUCAGGGCCAACUGUUGCCUGAAGAAGGGUAA .............((...)..).............((.(...).).)... >URS0000D68EBE_637910/1-52 ACAAAUUUGGCCGUUUCACGGUCAGGGCUGACUGUUGCCUGAAGAAGGGUAA .............(.(....)..).............((.(...).).)... >URS0000D6C02B_716541/1-52 AAUAUUUUGCCUGUUAAUUGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA ......((....)..)...................(.(.(...).).).... >URS0000D687E9_1086030/1-50 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D6C865_1329830/1-51 ACAAUUAAGCCUGUUAACGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .....((.....)..).................(.(..(...).).).... >URS0000D66E17_12908/1-52 AUCAAUUUGGCUAUUUAGUGGCCAGGGCCAACUGUUGCCUGAAAAAGGGGUC ..........(.(....)..)................((.(...).).)... >URS0000D6C14C_1124929/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..).............((.(...).).)... >URS0000D6D3EB_1173780/1-51 ACGAUUUUGGCCAUUUACGGCCAGGGCUAACUGUUGCCUGAAGAAGGGUAA ....................(.(.........)..).(((...)).).... >URS0000D66608_12908/1-52 ACAAAUUUGCCUGUUAAUCGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA ......((....)..)....................((.(...).).).... >URS0000D68241_1312879/1-52 AAUAUAUUGCCUGUUAAUUGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .......((...)..)....................((.(...).).).... >URS0000D6AF2F_766138/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAAGGUAA ............((....)..).............(.((...).).)... >URS0000D68CD1_1314885/1-51 ACGAUGUUGGCCACUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..).............((.(...).).)... >URS0000D672D4_556266/1-51 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGGUAA ............((....)..).............((.(...).).).... >URS0000D66B58_585054/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCCACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D6B7F9_1006003/1-52 CAUUAAAAGGCUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ..............((....)..).............((.(...).).)... >URS0000D68B03_1182659/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAU ............((....)..).............((.(...).).)... >URS0000D6A8B8_12908/1-51 AAAAUAAUGACCCUCACCGGUCAGGGCUAACUGCUGCCUGAAGAAAGGUAA .............((....)..).............(.((...).).)... >URS0000D687FB_1240348/1-52 ACGAUUUUGGCCAUUUACGGUCAGGGUCAACUGUUGCCUGAAGAAGGGGACG .............((....)..).............((.(...).).).... >URS0000D6CFBB_1182738/1-50 AAAUUGAUGGCCAUAACGGUCAGGGCGAACUGUUGCCUGAAGAAAGGUAA .............((...)..).............((.(...).).)... >URS0000D6AD33_1173951/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGAUAA .............((....)..).............(.((...)).).... >URS0000D65CD9_1281153/1-50 AUAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D672B8_670484/1-51 AAAAAUAUCUCCAGUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGGAAA ...................((..........)..).(((...)).)..... >URS0000D69B8A_882884/1-50 UGAAAAUUCUCCUUCCAGGAGAGGGCCAACUGUUGCCUGAAGAAGGGUAA ...................((..........)..)((.(...).).)... >URS0000D6C54F_1182700/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCUAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D663AB_1116017/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCGACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D69C13_1281189/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D6A59B_12908/1-52 CAUUAAAAGGCUCAUUAAGGGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA .....................((..........)..).(((...)).).... >URS0000D66CC5_1169350/1-50 AAAAAUAUCUCCAGUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGUAA ...................((..........)..).(((...)).).... >URS0000D6B300_1116095/1-50 AUAAAAUUGGCCGCUUCGGUAAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D6736E_1329856/1-53 AUUAAUUCGGCCAUUUAGUGGUCAGGACCGACUGUUGCCUGAAAAAGGGGUCA ........(.(.........)..).............((.(...)).)..... >URS0000D696E2_1212561/1-51 ACGAUGUUGGCCAUUUGCGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..).............((.(...).).)... >URS0000D6C66B_742730/1-50 AAAAAUAUCUCCAUUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGUAA ...................((..........)..).(((...)).).... >URS0000D69494_550677/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGGAAAAGGGUAA ............((....)..).............(.(.(...)).)... >URS0000D6C71F_1182709/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCUUGAAAAAGGGUAA .............((...)..).............((.(...).).)... >URS0000D6CF0B_12908/1-51 AAAAAUUUGGUCAUUUCUGGCCAGGGCCAACUGUUGCCUGAAGAAGGGUAA ....................((..........)..).(((...)).).... >URS0000D67249_1329845/1-53 AUCAAUUUGGCCAUUAAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA .............((.....)..).............((.(...).).).... >URS0000D6CA92_12908/1-54 UUGAAAAAGGCUCUUACGAGAGUCAGGGGCCAACUGUUGCCUGAAGAAGGGUAA ......................((...........)..).(((...)).).... >URS0000D6CCAA_12908/1-51 AAAAUAAUGACCCUCACCGGUCAGGGCCAACUGUUGCCUGAAGAAAGGUAA .............((....)..).............((.(...).).)... >URS0000D6973C_1124936/1-51 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..).............((.(...).).)... >URS0000D672C0_980518/1-53 AAGAAUUUGGCCAUUAAUUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .....................((..........)..).(((...).).).... >URS0000D6BB6A_12908/1-52 ACAAUUUUGCCUGUUAAUCGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA ......................((........)..).(((...).).).... >URS0000D6B46A_12908/1-53 AUGAAUUUGGCCAUUUAGUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .....................((..........)..).(((...).).).... >URS0000D66F85_656449/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAAUUAUUGCCUGAAAAAGGGUAA ............((....)..).............((.(...).).)... >URS0000D6660F_997330/1-51 ACGAUGUUGGCUAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..).............((.(...).).)...
4		G(AAR)A ((G)UN)R ((R)G)G A(NUR)U			43	47.8
>URS0000D6C4C3_1281120/1-50 ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D6A0D6_718254/1-53 AUUAAUUUGGCCAUUACAUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............(.(....)..)......(...)..((.(...).).).... >URS0000D6C71F_1182709/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCUUGAAAAAGGGUAA .............((...)..)......(...)..((.(...).).)... >URS0000D68D66_1281275/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGACAACUAUUGCCUGAAAAAGGGUAA .............((...)..)......(...)..((.(...).).)... >URS0000D6973C_1124936/1-51 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)......(...)..((.(...).).)... >URS0000D67249_1329845/1-53 AUCAAUUUGGCCAUUAAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA .............((.....)..)......(...)..((.(...).).).... >URS0000D68CD1_1314885/1-51 ACGAUGUUGGCCACUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)......(...)..((.(...).).)... >URS0000D66F85_656449/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAAUUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D6660F_997330/1-51 ACGAUGUUGGCUAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)......(...)..((.(...).).)... >URS0000D666B0_12908/1-50 AAUAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D672D4_556266/1-51 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGGUAA ............((....)..)......(...)..((.(...).).).... >URS0000D6912E_1116117/1-50 ACAAAAUUGGCCGCUUCGGUCAUGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D68D51_500639/1-53 AUAAAUUUGGCCAUUACGUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............(.(....)..)......(...)..((.(...).).).... >URS0000D6A0A9_1173950/1-51 ACGAUUCAGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)......(...)..((.(...).).)... >URS0000D687E9_1086030/1-50 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D6CEAD_12908/1-50 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAC ............((....)..)......(...)..((.(...).).)... >URS0000D6D2A4_754333/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGUCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D67D4D_1281273/1-50 GAAAAAAUGGCCAUUUUGGUCAGGGCCAACUGUUGCCUGAAGAAGGGUAA .............((...)..)......(...)..((.(...).).)... >URS0000D687FB_1240348/1-52 ACGAUUUUGGCCAUUUACGGUCAGGGUCAACUGUUGCCUGAAGAAGGGGACG .............((....)..)......(...)..((.(...).).).... >URS0000D68625_12908/1-53 AUAAAUUUGGCCAUUACAUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............(.(....)..)......(...)..((.(...).).).... >URS0000D6CEDA_218493/1-51 ACGAUUUUGGCCAUUUACGGUCAGGGCCGACUGUUGCCUGAAAAAGGGUAA .............((....)..)......(...)..((.(...).).)... >URS0000D6C770_12908/1-52 UAAUUUUUGGCCACUUUCUGGUCAGGGCCGACUGUUGCCUGAAGAAGGGUAA ..............((....)..)......(...)..((.(...).).)... >URS0000D65CD9_1281153/1-50 AUAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D6C14C_1124929/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)......(...)..((.(...).).)... >URS0000D6B3D6_1173805/1-51 ACGAUGUUGGCCAUUUAUGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)......(...)..((.(...).).)... >URS0000D69C13_1281189/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D6D194_290338/1-53 UUGAAAAAGGCUCUUACGAGAGUCAGGGCCAACUGUUGCCUGAAGAAGGGUAA .............(..(....)..)......(...)..((.(...).).)... >URS0000D66E3C_1078775/1-51 ACGAUUCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)......(...)..((.(...).).)... >URS0000D6CA92_12908/1-54 UUGAAAAAGGCUCUUACGAGAGUCAGGGGCCAACUGUUGCCUGAAGAAGGGUAA ..............(.(....)..).......(...)..((.(...).).)... >URS0000D672C0_980518/1-53 AAGAAUUUGGCCAUUAAUUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA .............((.....)..)......(...)..((.(...).).).... >URS0000D6B300_1116095/1-50 AUAAAAUUGGCCGCUUCGGUAAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D66E17_12908/1-52 AUCAAUUUGGCUAUUUAGUGGCCAGGGCCAACUGUUGCCUGAAAAAGGGGUC ..........(.(....)..).........(...)..((.(...).).)... >URS0000D66B58_585054/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCCACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D68B03_1182659/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAU ............((....)..)......(...)..((.(...).).)... >URS0000D69DA4_596155/1-51 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUAUUGCCUGAAGAAGGGUAA .............((....)..)......(...)..((.(...).).)... >URS0000D6C54F_1182700/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCUAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D65A71_754091/1-50 ACAAAAUUGGUCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D6CFBB_1182738/1-50 AAAUUGAUGGCCAUAACGGUCAGGGCGAACUGUUGCCUGAAGAAAGGUAA .............((...)..)......(...)..((.(...).).)... >URS0000D663AB_1116017/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCGACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D696E2_1212561/1-51 ACGAUGUUGGCCAUUUGCGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .............((....)..)......(...)..((.(...).).)... >URS0000D68EBE_637910/1-52 ACAAAUUUGGCCGUUUCACGGUCAGGGCUGACUGUUGCCUGAAGAAGGGUAA .............(.(....)..)......(...)..((.(...).).)... >URS0000D68972_1116087/1-50 ACAAAAUUGGCCGCUUCGGUCAUGGCCGAGUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)... >URS0000D6D1C3_1280958/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ............((....)..)......(...)..((.(...).).)...

>URS0000D6C14C_1124929/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... .............((....)..)......(...)..((.(...).).)... >URS0000D6973C_1124936/1-51 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... .............((....)..)......(...)..((.(...).).)... >URS0000D687FB_1240348/1-52 ACGAUUUUGGCCAUUUACGGUCAGGGUCAACUGUUGCCUGAAGAAGGGGACG .......................................(...)........ .............((....)..)................(...)........ .............((....)..).............((.(...).).).... .............((....)..)......(...)..((.(...).).).... >URS0000D6C4C3_1281120/1-50 ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D6CFBB_1182738/1-50 AAAUUGAUGGCCAUAACGGUCAGGGCGAACUGUUGCCUGAAGAAAGGUAA ......................................(...)....... .............((...)..)................(...)....... .............((...)..).............((.(...).).)... .............((...)..)......(...)..((.(...).).)... >URS0000D66E3C_1078775/1-51 ACGAUUCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... .............((....)..)......(...)..((.(...).).)... >URS0000D696E2_1212561/1-51 ACGAUGUUGGCCAUUUGCGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... .............((....)..)......(...)..((.(...).).)... >URS0000D666B0_12908/1-50 AAUAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D6C770_12908/1-52 UAAUUUUUGGCCACUUUCUGGUCAGGGCCGACUGUUGCCUGAAGAAGGGUAA ........................................(...)....... ..............((....)..)................(...)....... ..............((....)..).............((.(...).).)... ..............((....)..)......(...)..((.(...).).)... >URS0000D6CA92_12908/1-54 UUGAAAAAGGCUCUUACGAGAGUCAGGGGCCAACUGUUGCCUGAAGAAGGGUAA ..........................................(...)....... ..............(.(....)..).................(...)....... ......................((...........)..).(((...)).).... ..............(.(....)..).......(...)..((.(...).).)... >URS0000D69C13_1281189/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D68972_1116087/1-50 ACAAAAUUGGCCGCUUCGGUCAUGGCCGAGUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D68CD1_1314885/1-51 ACGAUGUUGGCCACUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... .............((....)..)......(...)..((.(...).).)... >URS0000D68B03_1182659/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAU ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D6A0A9_1173950/1-51 ACGAUUCAGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... .............((....)..)......(...)..((.(...).).)... >URS0000D663AB_1116017/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCGACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D68EBE_637910/1-52 ACAAAUUUGGCCGUUUCACGGUCAGGGCUGACUGUUGCCUGAAGAAGGGUAA ........................................(...)....... .............(.(....)..)................(...)....... .............(.(....)..).............((.(...).).)... .............(.(....)..)......(...)..((.(...).).)... >URS0000D6912E_1116117/1-50 ACAAAAUUGGCCGCUUCGGUCAUGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D69DA4_596155/1-51 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUAUUGCCUGAAGAAGGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... .............((....)..)......(...)..((.(...).).)... >URS0000D6C54F_1182700/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCUAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D66B58_585054/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCCACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D65A71_754091/1-50 ACAAAAUUGGUCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D68D66_1281275/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGACAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... .............((...)..).............((.(...).).)... .............((...)..)......(...)..((.(...).).)... >URS0000D6B300_1116095/1-50 AUAAAAUUGGCCGCUUCGGUAAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D6D1C3_1280958/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D66F85_656449/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAAUUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D687E9_1086030/1-50 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D6D2A4_754333/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGUCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D65CD9_1281153/1-50 AUAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D6CEAD_12908/1-50 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAC ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............((.(...).).)... ............((....)..)......(...)..((.(...).).)... >URS0000D6D194_290338/1-53 UUGAAAAAGGCUCUUACGAGAGUCAGGGCCAACUGUUGCCUGAAGAAGGGUAA .........................................(...)....... .............(..(....)..)................(...)....... .............(..(....)..).............((.(...).).)... .............(..(....)..)......(...)..((.(...).).)... >URS0000D6C71F_1182709/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCUUGAAAAAGGGUAA ......................................(...)....... ............((....)..)................(...)....... .............((...)..).............((.(...).).)... .............((...)..)......(...)..((.(...).).)... >URS0000D68D51_500639/1-53 AUAAAUUUGGCCAUUACGUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ .............(.(....)..)................(...)........ .............(.(....)..).............((.(...).).).... .............(.(....)..)......(...)..((.(...).).).... >URS0000D672C0_980518/1-53 AAGAAUUUGGCCAUUAAUUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ .............(.(....)..)................(...)........ .....................((..........)..).(((...).).).... .............((.....)..)......(...)..((.(...).).).... >URS0000D67D4D_1281273/1-50 GAAAAAAUGGCCAUUUUGGUCAGGGCCAACUGUUGCCUGAAGAAGGGUAA ......................................(...)....... .............((...)..)................(...)....... .............((...)..).............((.(...).).)... .............((...)..)......(...)..((.(...).).)... >URS0000D68625_12908/1-53 AUAAAUUUGGCCAUUACAUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ .............(.(....)..)................(...)........ .............(.(....)..).............((.(...).).).... .............(.(....)..)......(...)..((.(...).).).... >URS0000D6A0D6_718254/1-53 AUUAAUUUGGCCAUUACAUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ .............(.(....)..)................(...)........ .............(.(....)..).............((.(...).).).... .............(.(....)..)......(...)..((.(...).).).... >URS0000D672D4_556266/1-51 AUAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGGUAA ......................................(...)........ ............((....)..)................(...)........ ............((....)..).............((.(...).).).... ............((....)..)......(...)..((.(...).).).... >URS0000D6B3D6_1173805/1-51 ACGAUGUUGGCCAUUUAUGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... .............((....)..)......(...)..((.(...).).)... >URS0000D67249_1329845/1-53 AUCAAUUUGGCCAUUAAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ .............((.....)..)................(...)........ .............((.....)..).............((.(...).).).... .............((.....)..)......(...)..((.(...).).).... >URS0000D66E17_12908/1-52 AUCAAUUUGGCUAUUUAGUGGCCAGGGCCAACUGUUGCCUGAAAAAGGGGUC ........................................(...)....... ..........(.(....)..)...................(...)....... ..........(.(....)..)................((.(...).).)... ..........(.(....)..).........(...)..((.(...).).)... >URS0000D6CEDA_218493/1-51 ACGAUUUUGGCCAUUUACGGUCAGGGCCGACUGUUGCCUGAAAAAGGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... .............((....)..)......(...)..((.(...).).)... >URS0000D6660F_997330/1-51 ACGAUGUUGGCUAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... .............((....)..)......(...)..((.(...).).)... >URS0000D6C66B_742730/1-50 AAAAAUAUCUCCAUUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGUAA ......................................(...)....... ...................(.(.........)..)...(...)....... ...................((..........)..).(((...)).).... >URS0000D6B7F9_1006003/1-52 CAUUAAAAGGCUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ........................................(...)....... ..............((....)..)................(...)....... ..............((....)..).............((.(...).).)... >URS0000D680CE_12908/1-52 AUUAAAAAGGCUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ........................................(...)....... ..............((....)..)................(...)....... ..............((....)..).............((.(...).).)... >URS0000D6AD33_1173951/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGAUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............(.((...)).).... >URS0000D65A94_913069/1-51 ACGAUGUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAAGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............(.((...).).)... >URS0000D69494_550677/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGGAAAAGGGUAA .......................................(...)...... ............((....)..).................(...)...... ............((....)..).............(.(.(...)).)... >URS0000D6C2EF_12908/1-49 AUAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAGGGUAA ......................................(...)...... ............((....)..)................(...)...... ............((....)..).............((.(...)).)... >URS0000D6A59B_12908/1-52 CAUUAAAAGGCUCAUUAAGGGUCAGGGCCUCCUGUUGCCUGAAGAAGGGUAA ........................................(...)....... ..............((....)..)................(...)....... .....................((..........)..).(((...)).).... >URS0000D69B8A_882884/1-50 UGAAAAUUCUCCUUCCAGGAGAGGGCCAACUGUUGCCUGAAGAAGGGUAA .(...)............................................ .........................((....)..)...(...)....... ...................((..........)..)((.(...).).)... >URS0000D6B446_12908/1-51 AAAAUGAUGACCGUUACCGGUCAGGGCCUGCUGUUGCCUGAAAAAGGGUAA .......................................(...)....... ..........................((....)..)...(...)....... ..........................((....)..).(((...)).).... >URS0000D6CCAA_12908/1-51 AAAAUAAUGACCCUCACCGGUCAGGGCCAACUGUUGCCUGAAGAAAGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............((.(...).).)... >URS0000D6AF2F_766138/1-50 ACAAAAUUGGCCGCUUCGGUCAGGGCCAACUAUUGCCUGAAAAAAGGUAA ......................................(...)....... ............((....)..)................(...)....... ............((....)..).............(.((...).).)... >URS0000D672B8_670484/1-51 AAAAAUAUCUCCAGUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGGAAA ......................................(...)........ ...................(.(.........)..)...(...)........ ...................((..........)..).(((...)).)..... >URS0000D66CC5_1169350/1-50 AAAAAUAUCUCCAGUCAGGAGAGGGCUAACUGUUGCCUGAAGAAGGGUAA ......................................(...)....... ...................(.(.........)..)...(...)....... ...................((..........)..).(((...)).).... >URS0000D6CF0B_12908/1-51 AAAAAUUUGGUCAUUUCUGGCCAGGGCCAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... ..........................((....)..)...(...)....... ....................((..........)..).(((...)).).... >URS0000D6D09C_1002368/1-51 CAAAAAAUGGCCUUGCAUGGUCAGGGCCUCCUGUUGCCUGAAAAAGGGUAA .......................................(...)....... .............(.(...)..)................(...)....... .............(.(...)..).............((.(...).).)... >URS0000D6D22E_12908/1-54 AAUGGACUGGCCUGCCUGGCAGGCCCUGGCUGACUGUUGCCUGAAGAAGGGUAA ..........................................(...)....... .......................(.(.........)..)...(...)....... .......................(.(.........)..).(((...)).).... >URS0000D68241_1312879/1-52 AAUAUAUUGCCUGUUAAUUGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .......................................(...)........ .......((...)..).......................(...)........ .......((...)..)....................((.(...).).).... >URS0000D66608_12908/1-52 ACAAAUUUGCCUGUUAAUCGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .......................................(...)........ ......((....)..).......................(...)........ ......((....)..)....................((.(...).).).... >URS0000D6C02B_716541/1-52 AAUAUUUUGCCUGUUAAUUGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .......................................(...)........ ......((....)..).......................(...)........ ......((....)..)...................(.(.(...).).).... >URS0000D6B46A_12908/1-53 AUGAAUUUGGCCAUUUAGUGGUCAGGGCCAACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ .............((.....)..)................(...)........ .....................((..........)..).(((...).).).... >URS0000D6736E_1329856/1-53 AUUAAUUCGGCCAUUUAGUGGUCAGGACCGACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ ........(.(.........)..)................(...)........ ........(.(.........)..).............((.(...)).)..... >URS0000D6C865_1329830/1-51 ACAAUUAAGCCUGUUAACGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA ......................................(...)........ .....((.....)..)......................(...)........ .....((.....)..).................(.(..(...).).).... >URS0000D6B5A3_12908/1-53 AUCAAUUUGGCCAUUUAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ .............((.....)..)................(...)........ ...........................((....)..)((.(...)).)..... >URS0000D6BB6A_12908/1-52 ACAAUUUUGCCUGUUAAUCGGGCGGGCCAACUGUUGCCUGAAAAAGGGGUCA .......................................(...)........ ......((....)..).......................(...)........ ......................((........)..).(((...).).).... >URS0000D6D3EB_1173780/1-51 ACGAUUUUGGCCAUUUACGGCCAGGGCUAACUGUUGCCUGAAGAAGGGUAA .......................................(...)....... ....................(.(.........)..)...(...)....... ....................(.(.........)..).(((...)).).... >URS0000D6A8B8_12908/1-51 AAAAUAAUGACCCUCACCGGUCAGGGCUAACUGCUGCCUGAAGAAAGGUAA .......................................(...)....... .............((....)..)................(...)....... .............((....)..).............(.((...).).)... >URS0000D6CDF4_1235834/1-53 CAAGAUAUGGCCAUUUUACGGUCACGGCUGACUGUUGCCUGAAGAAGAGGUAA ........................................(...)........ ......................(.(........)..)...(...)........ >URS0000D65994_1173948/1-52 ACGAUUUUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGGACG .......................................(...)........ .............((....)..)................(...)........ >URS0000D6AF7C_500640/1-52 CAUUAAAAGACUCAUUAAGAGUCAGGGCCUCCUGUUGCCUGAAGAAGGAUAA ........................................(...)....... ...........................((....)..)...(...)....... >URS0000D6CEB2_12908/1-51 AAAAUCAUGACCCUCACCGGUCAGGGCUAACUGCUGCCUGAAGAAAGGUAA .......................................(...)....... .............((....)..)................(...)....... >URS0000D69F5D_1212554/1-52 ACGAUGCUGGCCAUUUACGGUCAGGGCUAACUGUUGCCUGAAGAAGGGGAAG .......................................(...)........ .............((....)..)................(...)........ >URS0000D6BC21_1169347/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGAGUAA ......................................(...)....... ............((....)..)................(...)....... >URS0000D68FD7_1281157/1-50 ACAAAAUUGGCCGUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAUGGUAA ......................................(...)....... ............((....)..)................(...)....... >URS0000D6A44B_1177180/1-53 UAACAAAUGGCCAUUUUACGGUCAAGGCUGACUGUUGCCUUAAGAAGAGGUAA ...........................................(...)..... ..............((....)..)...................(...)..... >URS0000D6A954_12908/1-53 AUUAAUUUGGCCAUUUAGUGGUCAGGGCCGACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ .............((.....)..)................(...)........ >URS0000D6988E_1334630/1-53 AUUAAUUUGGCCAUUUAGUGGUCAGGACCGACUGUUGCCUGAAAAAGGGGUCA ........................................(...)........ ..........((.....)..)...................(...)........ >URS0000D65FD2_12908/1-53 UAACAAAUGGCCAUUUUACGGUCAAGGCUGACUGUUGCCUGAAGAAGAGGUAA ........................................(...)........ ..............((....)..)................(...)........ >URS0000D6C28E_12908/1-52 AUUUAUGUGGCCAGUUGCGGUCAAGGCUGACUGUUGCCUGAAGAAGAGGUAA .......................................(...)........ .............((....)..)................(...)........ >URS0000D69ED4_12908/1-51 AAAAUCAUGACCCUCACCGGUCAGGGAUAACCGUUGCCUGAAGAAAGGUAA .......................................(...)....... >URS0000D699FE_12908/1-51 AUGAAUAAGGCCCAUUUGGGUCAGGGCUGACUGCUGCCUGAAAAAGGGUAA .......................................(...)....... >URS0000D6BFE4_701347/1-55 CCAAUUAUGGCCUCGGCAGCGGGUCAGGGCCGACUGCUGCCUGAAGAAGGGGAUA ..........................................(...)........ >URS0000D6A388_399742/1-52 AAUAAAAUCUCCUGAACAGGAGAGGGCCGACUGUUGCCUGAAAAAGGGAUCA .......................................(...)........ >URS0000D6B693_12908/1-51 CAAAAUUUCUCCGUUCCGGAGAGGGCUGAGUGUUGCCUGAAAACGAGGUAA ......................................(...)........ >URS0000D6BD95_12908/1-50 AAAAAUAUCUCCAGUCCGGAGAGGGCUAACUGUUGCCUGAAGAAGGGUAA ......................................(...).......

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	G(AAR)A			< 0.001		82.1

URS0000D6C4C3_1281120/1-50 ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA .........1.........2.........3.........4.........5 12345678901234567890123456789012345678901234567890
2	((G)UN)R			< 0.001		8.4

URS0000D6C4C3_1281120/1-50 ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA .........1.........2.........3.........4.........5 12345678901234567890123456789012345678901234567890
3	((R)G)G			< 0.001		5.79

URS0000D6C4C3_1281120/1-50 ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA .........1.........2.........3.........4.........5 12345678901234567890123456789012345678901234567890
4	A(NUR)U			< 0.001		2.36

URS0000D6C4C3_1281120/1-50 ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA .........1.........2.........3.........4.........5 12345678901234567890123456789012345678901234567890
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	G(AAR)A			< 0.001		82.1

URS0000D6C4C3_1281120/1-50 ACAAAAUUGGCCAUUUCGGUCAGGGCCAACUAUUGCCUGAAAAAGGGUAA .........1.........2.........3.........4.........5 12345678901234567890123456789012345678901234567890
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).