D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Trans-activation response element (TAR)   (Rfam: RF00250)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(N()CCA)
U(CU(C))
((C)UC)U
(.YNRGA.)
C(U(C))
(GR()C)
((Y)U)G
97.7
93.2
97.7
93.2
95.5
95.5
90.9
(.YNRGA.)

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.9 %
(± 0.156 %)
Decision tree:

5-fold cross-validation: 94.3 %
(± 2.25 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 95.3 %
(± 4.39 %)
of DQ373065.1/9036-9095
DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
(.((..(.(((((((..((.((...(..(......))..)).)).))))))).)))...)
.........1.........2.........3.........4.........5.........6
123456789012345678901234567890123456789012345678901234567890

abstract shape: ()

Number of sequences
Structure ORBs (out of 44) (%)
1 (N()CCA)
 42 95.5
>AY074891.1/8871-8931
GGGUCUCUCUAGGUAGAUCAGAUCAGAGCCUGGGAGCUCUCUGGCUAUCUGGGGAACCCAC
(.(.....................................................)...)
>AF286239.1/8968-9027
GGGUCUCUCUUGUUGGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGCAGGGGAACCCAC
(.(....................................................)...)
>AF254724.1/392-452
GGGUCUCUCUUGUUAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCUAGCUAGAGAACCCAC
(.(.....................................................)...)
>AF254695.1/392-452
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCCUUCUAGAGAACCCAC
(.(.....................................................)...)
>AF443094.1/8913-8973
GGGUCGCCUUAGGUAGACCAGAUCUGAGCCCGGGAGCUCUCUGGCUAUCUAGGGAACCCAC
(.(.....................................................)...)
>AF484519.1/8748-8808
GGGUCUCUCUUGUCAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCCGACUAGGGAACCCAC
(.(.....................................................)...)
>AF063151.1/456-516
GGGUCUUUCUGGUUAGACCGAAUCUGAGCCUGGGAGCUCUCUGGCUAGCUAGGGAAUCCAC
(.(.....................................................)...)
>AF457079.1/8708-8767
GGGUCUCUCUUAGUAGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGUAAGGGAACCCAU
(.(....................................................)...)
>AF457068.1/8753-8812
GGGUCUCUCUUGUUAGACCAGAUAGAGUCUGAGAACUCUCUGGCUAGCGAGGGAACCCAC
(.(....................................................)...)
>AF096779.1/454-514
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUAUGGCUAUUUGGGGAACCCAA
(.(.....................................................)...)
>AF321523.1/455-515
GGGUCUCUCUAGGUAGGCCAGAUCUGAGCCCGGGAGCUCUCUGGCUAUAUGGGGAACCCAC
(.(.....................................................)...)
>AF196736.1/484-544
GGGUCUCUCUAGUUAGACCAGAUUCGAGCCUGGGAGCUCUCUGGCUAGUGGAGGAACCCAC
(.(.....................................................)...)
>U72094.1/327-387
GGGUCUCUCUAGUUAGACCAGAUCUAAGCCUAGGAGCUCUCUAGCUAGCUAAAGAACCCAC
(.(.....................................................)...)
>AF254726.1/391-451
GGGUCUCUCUAGGUGGACCAGAUCUGAGCCUGGGCGCUCUCUGGCUACCUAGGGAACCCAC
(.(.....................................................)...)
>AF102206.1/384-443
GGGUCUCUCUUGCUAGACCAGAUUGAGCCUGGGAGCUCUCUGACUAGCAGAGGAACCCAC
(.(....................................................)...)
>AF411965.1/9548-9608
GGGUCUCUCUAGGCAGACCAGAUUUGAGCCCGGGAGCUCUCUGGCUAUCUAGGGAACCCAC
(.(.....................................................)...)
>U72122.1/306-366
UGGUCUCUCUUGUUAGACCAGAUCAGGGCCUGAGAGCUCUCUGGCUAACUAGGGAACCCAC
(.(.....................................................)...)
>AF286233.1/8890-8950
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCCGAGUGCUCUCUGGCUAUCCAGGGAACCCAC
(.(.....................................................)...)
>U24479.1/327-387
GGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCAC
(.(.....................................................)...)
>AF443095.1/8922-8982
GGGUCUCUCUAGGUAGACCAGAUAUGAGCCUGGGAGCUCUCUGGCUGCUUAGGGAACCCAC
(.(.....................................................)...)
>AF254684.1/394-453
GGGUCUCUCUAGGUAGACCAGGUCCAAGCCCGGGAGCUCCUGGCUAUCUAGGAAACCCAC
(.(....................................................)...)
>AF484484.1/8728-8787
AGGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAGGGAAACCCAC
(.(....................................................)...)
>AF063150.1/456-516
GGGUCUCUCUGGUUAGACACAAUCUGAGCCUGGGAGCUCUCUGACUAGCUAGGGAACCCAC
(.(.....................................................)...)
>DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
(.(....................................................)...)
>AF115393.1/8994-9054
GGGUCUCUCUUGCUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGUCAGGUAGAGAACCCAC
(.(.....................................................)...)
>AF457071.1/8730-8789
AAGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUUUAGCUAGCAAAGGAACCCAC
(.(....................................................)...)
>AF063179.1/457-517
GGGUCUCUCUAGUCAGACCAGAUCUGAGCCUGAAAGCUCUCUAGCUAGCUAGGGAACCCAC
(.(.....................................................)...)
>AF190128.1/8856-8916
GGGUCUCUUUGGUUAGACCAGAUCUGAGCCUGGGAGUUCUCUGGCUGGCCAAGGAACCCAC
(.(.....................................................)...)
>AF457057.1/8730-8789
AGGUCUCUCUUAGUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAAAAGAACCCAC
(.(....................................................)...)
>AF465242.1/9763-9822
GGGUCUCUCUAGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAGCUGAGAACCCAC
(.(....................................................)...)
>AF457060.1/8743-8802
AGGUCUCUCUUGUUGGACCAGAUAGAGCCUAGGAGCUCUCUGGCUAGCAAAAGAACCCAC
(.(....................................................)...)
>AF063164.1/454-514
GGGCUCCUCUGGUUAGACCAAAUCUGAGGCUGGGAGCUCUCUGGCUAGCUAGGGAACCCAC
(.(.....................................................)...)
>X52154.1/9632-9691
GGGUCUCUUUCACUGGACCAGAUUUGAGCCUGGGAGCUCUCUACCAGUGAAGGAACCCAC
(.(....................................................)...)
>AF442567.1/8145-8205
AGGUCUCUCUUGCUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAGUUAAGGAACCCAC
(.(.....................................................)...)
>AF457076.1/8775-8834
AAGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUCUGACCAGCGAAGGAACCCAC
(.(....................................................)...)
>AF196762.1/466-526
GUGUCUCUCUAGUUAUACCAUAUCUGAUCCUGGGAGCUCUCUGGCUAGCUAGGGAACCCAC
(.(.....................................................)...)
>AF457086.1/8766-8825
GGGUCUCUCUUGGUAGACCAGAUCGAGCCUGGGAGCUCUCUGGUUGACAAGGGAACCCAC
(.(....................................................)...)
>L28844.1/328-388
AGGUCUCUCUUGUUAGACCAGAUCCGAGCCUAGGAACUCUCUGGCUAACUAAGGAACCCAC
(.(.....................................................)...)
>U51296.1/362-421
GGGUCUCUCUUGUUAGACCAGGUCGAGCCCGGGAGCUCUCUGGCUAGCAAGGGAACCCAC
(.(....................................................)...)
>AF063176.1/456-516
GGCUCUCUCUAGUUGGACCAGAUCUGAGCCUAGAAGCUCUCUGGCUAACUAGGGAACCCAC
(.(.....................................................)...)
>AY037273.1/8734-8794
AGGUCUCUCUAAGUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAACUAAGGAACCCAC
(.(.....................................................)...)
>U72138.1/316-376
GGGUCUCUCUAGUUAGACCAGAUCUAAGCCUAAGAGCUCUCUGGCUGACUAGGGAACCCAC
(.(.....................................................)...)
2 (N()CCA)
U(CU(C))
 35 79.5
>AF254724.1/392-452
GGGUCUCUCUUGUUAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCUAGCUAGAGAACCCAC
(.((..(..............................................).))...)
>AF484484.1/8728-8787
AGGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAGGGAAACCCAC
(.((..(..............................................)))...)
>AF457057.1/8730-8789
AGGUCUCUCUUAGUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAAAAGAACCCAC
(.((..(..............................................)))...)
>AF457068.1/8753-8812
GGGUCUCUCUUGUUAGACCAGAUAGAGUCUGAGAACUCUCUGGCUAGCGAGGGAACCCAC
(.((..(..............................................)))...)
>AY074891.1/8871-8931
GGGUCUCUCUAGGUAGAUCAGAUCAGAGCCUGGGAGCUCUCUGGCUAUCUGGGGAACCCAC
(.((..(..............................................).))...)
>AF096779.1/454-514
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUAUGGCUAUUUGGGGAACCCAA
(.((..(..............................................).))...)
>AF190128.1/8856-8916
GGGUCUCUUUGGUUAGACCAGAUCUGAGCCUGGGAGUUCUCUGGCUGGCCAAGGAACCCAC
(.((..(..............................................).))...)
>AF465242.1/9763-9822
GGGUCUCUCUAGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAGCUGAGAACCCAC
(.((..(..............................................)))...)
>AF063179.1/457-517
GGGUCUCUCUAGUCAGACCAGAUCUGAGCCUGAAAGCUCUCUAGCUAGCUAGGGAACCCAC
(.((..(..............................................).))...)
>AF063150.1/456-516
GGGUCUCUCUGGUUAGACACAAUCUGAGCCUGGGAGCUCUCUGACUAGCUAGGGAACCCAC
(.((..(..............................................).))...)
>AF321523.1/455-515
GGGUCUCUCUAGGUAGGCCAGAUCUGAGCCCGGGAGCUCUCUGGCUAUAUGGGGAACCCAC
(.((..(..............................................).))...)
>AF196762.1/466-526
GUGUCUCUCUAGUUAUACCAUAUCUGAUCCUGGGAGCUCUCUGGCUAGCUAGGGAACCCAC
(.((..(..............................................).))...)
>AF484519.1/8748-8808
GGGUCUCUCUUGUCAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCCGACUAGGGAACCCAC
(.((..(..............................................).))...)
>AF254684.1/394-453
GGGUCUCUCUAGGUAGACCAGGUCCAAGCCCGGGAGCUCCUGGCUAUCUAGGAAACCCAC
(.((..(..............................................)))...)
>AF442567.1/8145-8205
AGGUCUCUCUUGCUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAGUUAAGGAACCCAC
(.((..(..............................................).))...)
>U72138.1/316-376
GGGUCUCUCUAGUUAGACCAGAUCUAAGCCUAAGAGCUCUCUGGCUGACUAGGGAACCCAC
(.((..(..............................................).))...)
>AF457086.1/8766-8825
GGGUCUCUCUUGGUAGACCAGAUCGAGCCUGGGAGCUCUCUGGUUGACAAGGGAACCCAC
(.((..(..............................................)))...)
>U72094.1/327-387
GGGUCUCUCUAGUUAGACCAGAUCUAAGCCUAGGAGCUCUCUAGCUAGCUAAAGAACCCAC
(.((..(..............................................).))...)
>U51296.1/362-421
GGGUCUCUCUUGUUAGACCAGGUCGAGCCCGGGAGCUCUCUGGCUAGCAAGGGAACCCAC
(.((..(..............................................)))...)
>L28844.1/328-388
AGGUCUCUCUUGUUAGACCAGAUCCGAGCCUAGGAACUCUCUGGCUAACUAAGGAACCCAC
(.((..(..............................................).))...)
>AF196736.1/484-544
GGGUCUCUCUAGUUAGACCAGAUUCGAGCCUGGGAGCUCUCUGGCUAGUGGAGGAACCCAC
(.((..(..............................................).))...)
>AF286233.1/8890-8950
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCCGAGUGCUCUCUGGCUAUCCAGGGAACCCAC
(.((..(..............................................).))...)
>U72122.1/306-366
UGGUCUCUCUUGUUAGACCAGAUCAGGGCCUGAGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(..............................................).))...)
>AF063176.1/456-516
GGCUCUCUCUAGUUGGACCAGAUCUGAGCCUAGAAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(..............................................).))...)
>AY037273.1/8734-8794
AGGUCUCUCUAAGUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAACUAAGGAACCCAC
(.((..(..............................................).))...)
>AF102206.1/384-443
GGGUCUCUCUUGCUAGACCAGAUUGAGCCUGGGAGCUCUCUGACUAGCAGAGGAACCCAC
(.((..(..............................................)))...)
>U24479.1/327-387
GGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(..............................................).))...)
>DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
(.((..(..............................................)))...)
>AF115393.1/8994-9054
GGGUCUCUCUUGCUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGUCAGGUAGAGAACCCAC
(.((..(..............................................).))...)
>AF254695.1/392-452
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCCUUCUAGAGAACCCAC
(.((..(..............................................).))...)
>AF411965.1/9548-9608
GGGUCUCUCUAGGCAGACCAGAUUUGAGCCCGGGAGCUCUCUGGCUAUCUAGGGAACCCAC
(.((..(..............................................).))...)
>AF443095.1/8922-8982
GGGUCUCUCUAGGUAGACCAGAUAUGAGCCUGGGAGCUCUCUGGCUGCUUAGGGAACCCAC
(.((..(..............................................).))...)
>AF254726.1/391-451
GGGUCUCUCUAGGUGGACCAGAUCUGAGCCUGGGCGCUCUCUGGCUACCUAGGGAACCCAC
(.((..(..............................................).))...)
>AF286239.1/8968-9027
GGGUCUCUCUUGUUGGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGCAGGGGAACCCAC
(.((..(..............................................)))...)
>AF457079.1/8708-8767
GGGUCUCUCUUAGUAGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGUAAGGGAACCCAU
(.((..(..............................................)))...)
3 (N()CCA)
U(CU(C))
((C)UC)U
 32 72.7
>AF484484.1/8728-8787
AGGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAGGGAAACCCAC
(.((..(..............(..(..........)..)..............)))...)
>AF484519.1/8748-8808
GGGUCUCUCUUGUCAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCCGACUAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF063176.1/456-516
GGCUCUCUCUAGUUGGACCAGAUCUGAGCCUAGAAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF465242.1/9763-9822
GGGUCUCUCUAGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAGCUGAGAACCCAC
(.((..(..............(...(..........)..).............)))...)
>AF321523.1/455-515
GGGUCUCUCUAGGUAGGCCAGAUCUGAGCCCGGGAGCUCUCUGGCUAUAUGGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF411965.1/9548-9608
GGGUCUCUCUAGGCAGACCAGAUUUGAGCCCGGGAGCUCUCUGGCUAUCUAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AY037273.1/8734-8794
AGGUCUCUCUAAGUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAACUAAGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF096779.1/454-514
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUAUGGCUAUUUGGGGAACCCAA
(.((..(..............(...(..........)..).............).))...)
>AF443095.1/8922-8982
GGGUCUCUCUAGGUAGACCAGAUAUGAGCCUGGGAGCUCUCUGGCUGCUUAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF254726.1/391-451
GGGUCUCUCUAGGUGGACCAGAUCUGAGCCUGGGCGCUCUCUGGCUACCUAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF286233.1/8890-8950
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCCGAGUGCUCUCUGGCUAUCCAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF102206.1/384-443
GGGUCUCUCUUGCUAGACCAGAUUGAGCCUGGGAGCUCUCUGACUAGCAGAGGAACCCAC
(.((..(..............(..(..........)..)..............)))...)
>AF286239.1/8968-9027
GGGUCUCUCUUGUUGGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGCAGGGGAACCCAC
(.((..(..............(..(..........)..)..............)))...)
>AF457057.1/8730-8789
AGGUCUCUCUUAGUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAAAAGAACCCAC
(.((..(..............(..(..........)..)..............)))...)
>AF457079.1/8708-8767
GGGUCUCUCUUAGUAGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGUAAGGGAACCCAU
(.((..(..............(..(..........)..)..............)))...)
>AF254724.1/392-452
GGGUCUCUCUUGUUAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCUAGCUAGAGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF442567.1/8145-8205
AGGUCUCUCUUGCUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAGUUAAGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>L28844.1/328-388
AGGUCUCUCUUGUUAGACCAGAUCCGAGCCUAGGAACUCUCUGGCUAACUAAGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF196736.1/484-544
GGGUCUCUCUAGUUAGACCAGAUUCGAGCCUGGGAGCUCUCUGGCUAGUGGAGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>U72094.1/327-387
GGGUCUCUCUAGUUAGACCAGAUCUAAGCCUAGGAGCUCUCUAGCUAGCUAAAGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF457086.1/8766-8825
GGGUCUCUCUUGGUAGACCAGAUCGAGCCUGGGAGCUCUCUGGUUGACAAGGGAACCCAC
(.((..(..............(..(..........)..)..............)))...)
>AF196762.1/466-526
GUGUCUCUCUAGUUAUACCAUAUCUGAUCCUGGGAGCUCUCUGGCUAGCUAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>U24479.1/327-387
GGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AY074891.1/8871-8931
GGGUCUCUCUAGGUAGAUCAGAUCAGAGCCUGGGAGCUCUCUGGCUAUCUGGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>U72122.1/306-366
UGGUCUCUCUUGUUAGACCAGAUCAGGGCCUGAGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>U72138.1/316-376
GGGUCUCUCUAGUUAGACCAGAUCUAAGCCUAAGAGCUCUCUGGCUGACUAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF457068.1/8753-8812
GGGUCUCUCUUGUUAGACCAGAUAGAGUCUGAGAACUCUCUGGCUAGCGAGGGAACCCAC
(.((..(..............(..(..........)..)..............)))...)
>AF063150.1/456-516
GGGUCUCUCUGGUUAGACACAAUCUGAGCCUGGGAGCUCUCUGACUAGCUAGGGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>U51296.1/362-421
GGGUCUCUCUUGUUAGACCAGGUCGAGCCCGGGAGCUCUCUGGCUAGCAAGGGAACCCAC
(.((..(..............(..(..........)..)..............)))...)
>AF115393.1/8994-9054
GGGUCUCUCUUGCUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGUCAGGUAGAGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>AF254695.1/392-452
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCCUUCUAGAGAACCCAC
(.((..(..............(...(..........)..).............).))...)
>DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
(.((..(..............(...(..........)..).............)))...)
4 (N()CCA)
U(CU(C))
((C)UC)U
(.YNRGA.)
 30 68.2
>AF102206.1/384-443
GGGUCUCUCUUGCUAGACCAGAUUGAGCCUGGGAGCUCUCUGACUAGCAGAGGAACCCAC
(.((..(..............(..(..(......))..)..............)))...)
>AF254695.1/392-452
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCCUUCUAGAGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>U72094.1/327-387
GGGUCUCUCUAGUUAGACCAGAUCUAAGCCUAGGAGCUCUCUAGCUAGCUAAAGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF465242.1/9763-9822
GGGUCUCUCUAGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAGCUGAGAACCCAC
(.((..(..............(...(..(......))..).............)))...)
>AF254724.1/392-452
GGGUCUCUCUUGUUAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCUAGCUAGAGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF484519.1/8748-8808
GGGUCUCUCUUGUCAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCCGACUAGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>U51296.1/362-421
GGGUCUCUCUUGUUAGACCAGGUCGAGCCCGGGAGCUCUCUGGCUAGCAAGGGAACCCAC
(.((..(..............(..(..(......))..)..............)))...)
>U24479.1/327-387
GGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF115393.1/8994-9054
GGGUCUCUCUUGCUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGUCAGGUAGAGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF286239.1/8968-9027
GGGUCUCUCUUGUUGGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGCAGGGGAACCCAC
(.((..(..............(..(..(......))..)..............)))...)
>AY037273.1/8734-8794
AGGUCUCUCUAAGUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAACUAAGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF457057.1/8730-8789
AGGUCUCUCUUAGUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAAAAGAACCCAC
(.((..(..............(..(..(......))..)..............)))...)
>AF442567.1/8145-8205
AGGUCUCUCUUGCUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAGUUAAGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AY074891.1/8871-8931
GGGUCUCUCUAGGUAGAUCAGAUCAGAGCCUGGGAGCUCUCUGGCUAUCUGGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF484484.1/8728-8787
AGGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAGGGAAACCCAC
(.((..(..............(..(..(......))..)..............)))...)
>DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
(.((..(..............(...(..(......))..).............)))...)
>AF063150.1/456-516
GGGUCUCUCUGGUUAGACACAAUCUGAGCCUGGGAGCUCUCUGACUAGCUAGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF196762.1/466-526
GUGUCUCUCUAGUUAUACCAUAUCUGAUCCUGGGAGCUCUCUGGCUAGCUAGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>L28844.1/328-388
AGGUCUCUCUUGUUAGACCAGAUCCGAGCCUAGGAACUCUCUGGCUAACUAAGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF063176.1/456-516
GGCUCUCUCUAGUUGGACCAGAUCUGAGCCUAGAAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>U72122.1/306-366
UGGUCUCUCUUGUUAGACCAGAUCAGGGCCUGAGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF457068.1/8753-8812
GGGUCUCUCUUGUUAGACCAGAUAGAGUCUGAGAACUCUCUGGCUAGCGAGGGAACCCAC
(.((..(..............(..(..(......))..)..............)))...)
>AF321523.1/455-515
GGGUCUCUCUAGGUAGGCCAGAUCUGAGCCCGGGAGCUCUCUGGCUAUAUGGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF443095.1/8922-8982
GGGUCUCUCUAGGUAGACCAGAUAUGAGCCUGGGAGCUCUCUGGCUGCUUAGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>U72138.1/316-376
GGGUCUCUCUAGUUAGACCAGAUCUAAGCCUAAGAGCUCUCUGGCUGACUAGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF411965.1/9548-9608
GGGUCUCUCUAGGCAGACCAGAUUUGAGCCCGGGAGCUCUCUGGCUAUCUAGGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF457086.1/8766-8825
GGGUCUCUCUUGGUAGACCAGAUCGAGCCUGGGAGCUCUCUGGUUGACAAGGGAACCCAC
(.((..(..............(..(..(......))..)..............)))...)
>AF196736.1/484-544
GGGUCUCUCUAGUUAGACCAGAUUCGAGCCUGGGAGCUCUCUGGCUAGUGGAGGAACCCAC
(.((..(..............(...(..(......))..).............).))...)
>AF096779.1/454-514
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUAUGGCUAUUUGGGGAACCCAA
(.((..(..............(...(..(......))..).............).))...)
>AF457079.1/8708-8767
GGGUCUCUCUUAGUAGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGUAAGGGAACCCAU
(.((..(..............(..(..(......))..)..............)))...)
5 (N()CCA)
U(CU(C))
((C)UC)U
(.YNRGA.)
C(U(C))
 25 56.8
>AF443095.1/8922-8982
GGGUCUCUCUAGGUAGACCAGAUAUGAGCCUGGGAGCUCUCUGGCUGCUUAGGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF096779.1/454-514
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUAUGGCUAUUUGGGGAACCCAA
(.((..(.(............(...(..(......))..)...........).).))...)
>AF286239.1/8968-9027
GGGUCUCUCUUGUUGGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGCAGGGGAACCCAC
(.((..(.(............(..(..(......))..)...........).).))...)
>U24479.1/327-387
GGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF115393.1/8994-9054
GGGUCUCUCUUGCUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGUCAGGUAGAGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AY074891.1/8871-8931
GGGUCUCUCUAGGUAGAUCAGAUCAGAGCCUGGGAGCUCUCUGGCUAUCUGGGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF063176.1/456-516
GGCUCUCUCUAGUUGGACCAGAUCUGAGCCUAGAAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AY037273.1/8734-8794
AGGUCUCUCUAAGUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAACUAAGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF457068.1/8753-8812
GGGUCUCUCUUGUUAGACCAGAUAGAGUCUGAGAACUCUCUGGCUAGCGAGGGAACCCAC
(.((..(.(............(..(..(......))..)...........).).))...)
>AF465242.1/9763-9822
GGGUCUCUCUAGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAGCUGAGAACCCAC
(.((..(.(............(...(..(......))..)...........)).))...)
>AF457079.1/8708-8767
GGGUCUCUCUUAGUAGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGUAAGGGAACCCAU
(.((..(.(............(..(..(......))..)...........).).))...)
>AF254724.1/392-452
GGGUCUCUCUUGUUAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCUAGCUAGAGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF411965.1/9548-9608
GGGUCUCUCUAGGCAGACCAGAUUUGAGCCCGGGAGCUCUCUGGCUAUCUAGGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF196736.1/484-544
GGGUCUCUCUAGUUAGACCAGAUUCGAGCCUGGGAGCUCUCUGGCUAGUGGAGGAACCCAC
(.((..(.(............(...(..(......))..)...........))..))...)
>AF196762.1/466-526
GUGUCUCUCUAGUUAUACCAUAUCUGAUCCUGGGAGCUCUCUGGCUAGCUAGGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>L28844.1/328-388
AGGUCUCUCUUGUUAGACCAGAUCCGAGCCUAGGAACUCUCUGGCUAACUAAGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF321523.1/455-515
GGGUCUCUCUAGGUAGGCCAGAUCUGAGCCCGGGAGCUCUCUGGCUAUAUGGGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF102206.1/384-443
GGGUCUCUCUUGCUAGACCAGAUUGAGCCUGGGAGCUCUCUGACUAGCAGAGGAACCCAC
(.((..(.(............(..(..(......))..)...........))..))...)
>DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
(.((..(.(............(...(..(......))..)...........).)))...)
>U51296.1/362-421
GGGUCUCUCUUGUUAGACCAGGUCGAGCCCGGGAGCUCUCUGGCUAGCAAGGGAACCCAC
(.((..(.(............(..(..(......))..)...........).).))...)
>U72122.1/306-366
UGGUCUCUCUUGUUAGACCAGAUCAGGGCCUGAGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF484519.1/8748-8808
GGGUCUCUCUUGUCAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCCGACUAGGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF442567.1/8145-8205
AGGUCUCUCUUGCUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAGUUAAGGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF254695.1/392-452
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCCUUCUAGAGAACCCAC
(.((..(.(............(...(..(......))..)...........).).))...)
>AF484484.1/8728-8787
AGGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAGGGAAACCCAC
(.((..(.(............(..(..(......))..)...........))..))...)
6 (N()CCA)
U(CU(C))
((C)UC)U
(.YNRGA.)
C(U(C))
(GR()C)
 23 52.3
>AF457079.1/8708-8767
GGGUCUCUCUUAGUAGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGUAAGGGAACCCAU
(.((..(.(.....(..(...(..(..(......))..)...).).....).).))...)
>AF457068.1/8753-8812
GGGUCUCUCUUGUUAGACCAGAUAGAGUCUGAGAACUCUCUGGCUAGCGAGGGAACCCAC
(.((..(.(.....(..(...(..(..(......))..)...).).....).).))...)
>AF254724.1/392-452
GGGUCUCUCUUGUUAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCUAGCUAGAGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>U72122.1/306-366
UGGUCUCUCUUGUUAGACCAGAUCAGGGCCUGAGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>AF465242.1/9763-9822
GGGUCUCUCUAGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAGCUGAGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....)).))...)
>AF102206.1/384-443
GGGUCUCUCUUGCUAGACCAGAUUGAGCCUGGGAGCUCUCUGACUAGCAGAGGAACCCAC
(.((..(.(.....(..(...(..(..(......))..)...).).....))..))...)
>AF196736.1/484-544
GGGUCUCUCUAGUUAGACCAGAUUCGAGCCUGGGAGCUCUCUGGCUAGUGGAGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....))..))...)
>AF411965.1/9548-9608
GGGUCUCUCUAGGCAGACCAGAUUUGAGCCCGGGAGCUCUCUGGCUAUCUAGGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).)))...)
>AY074891.1/8871-8931
GGGUCUCUCUAGGUAGAUCAGAUCAGAGCCUGGGAGCUCUCUGGCUAUCUGGGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>AF254695.1/392-452
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCCUUCUAGAGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>AY037273.1/8734-8794
AGGUCUCUCUAAGUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAACUAAGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>AF442567.1/8145-8205
AGGUCUCUCUUGCUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAGUUAAGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>U24479.1/327-387
GGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>AF484519.1/8748-8808
GGGUCUCUCUUGUCAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCCGACUAGGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>L28844.1/328-388
AGGUCUCUCUUGUUAGACCAGAUCCGAGCCUAGGAACUCUCUGGCUAACUAAGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>AF484484.1/8728-8787
AGGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAGGGAAACCCAC
(.((..(.(.....(..(...(..(..(......))..)...).).....))..))...)
>U51296.1/362-421
GGGUCUCUCUUGUUAGACCAGGUCGAGCCCGGGAGCUCUCUGGCUAGCAAGGGAACCCAC
(.((..(.(.....(..(...(..(..(......))..)...).).....).).))...)
>AF063176.1/456-516
GGCUCUCUCUAGUUGGACCAGAUCUGAGCCUAGAAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>AF321523.1/455-515
GGGUCUCUCUAGGUAGGCCAGAUCUGAGCCCGGGAGCUCUCUGGCUAUAUGGGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>AF096779.1/454-514
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUAUGGCUAUUUGGGGAACCCAA
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>AF286239.1/8968-9027
GGGUCUCUCUUGUUGGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGCAGGGGAACCCAC
(.((..(.(.....(..(...(..(..(......))..)...).).....).).))...)
>AF443095.1/8922-8982
GGGUCUCUCUAGGUAGACCAGAUAUGAGCCUGGGAGCUCUCUGGCUGCUUAGGGAACCCAC
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
7 (N()CCA)
U(CU(C))
((C)UC)U
(.YNRGA.)
C(U(C))
(GR()C)
((Y)U)G
 20 45.5
>DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).)))...)
>L28844.1/328-388
AGGUCUCUCUUGUUAGACCAGAUCCGAGCCUAGGAACUCUCUGGCUAACUAAGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF457079.1/8708-8767
GGGUCUCUCUUAGUAGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGUAAGGGAACCCAU
(.((..(.(.....(..((.((..(..(......))..)).)).).....).).))...)
>AF254724.1/392-452
GGGUCUCUCUUGUUAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCUAGCUAGAGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF254695.1/392-452
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCCUUCUAGAGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>U72122.1/306-366
UGGUCUCUCUUGUUAGACCAGAUCAGGGCCUGAGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AY037273.1/8734-8794
AGGUCUCUCUAAGUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAACUAAGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF321523.1/455-515
GGGUCUCUCUAGGUAGGCCAGAUCUGAGCCCGGGAGCUCUCUGGCUAUAUGGGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF063176.1/456-516
GGCUCUCUCUAGUUGGACCAGAUCUGAGCCUAGAAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF411965.1/9548-9608
GGGUCUCUCUAGGCAGACCAGAUUUGAGCCCGGGAGCUCUCUGGCUAUCUAGGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF286239.1/8968-9027
GGGUCUCUCUUGUUGGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGCAGGGGAACCCAC
(.((..(.(.....(..((.((..(..(......))..)).)).).....).).))...)
>AF484519.1/8748-8808
GGGUCUCUCUUGUCAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCCGACUAGGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF442567.1/8145-8205
AGGUCUCUCUUGCUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAGUUAAGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>U24479.1/327-387
GGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF457068.1/8753-8812
GGGUCUCUCUUGUUAGACCAGAUAGAGUCUGAGAACUCUCUGGCUAGCGAGGGAACCCAC
(.((..(.(.....(..((.((..(..(......))..)).)).).....).).))...)
>U51296.1/362-421
GGGUCUCUCUUGUUAGACCAGGUCGAGCCCGGGAGCUCUCUGGCUAGCAAGGGAACCCAC
(.((..(.(.....(..((.((..(..(......))..)).)).).....).).))...)
>AF102206.1/384-443
GGGUCUCUCUUGCUAGACCAGAUUGAGCCUGGGAGCUCUCUGACUAGCAGAGGAACCCAC
(.((..(.(.....(..((.((..(..(......))..)).)).).....))..))...)
>AF196736.1/484-544
GGGUCUCUCUAGUUAGACCAGAUUCGAGCCUGGGAGCUCUCUGGCUAGUGGAGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....))..))...)
>AY074891.1/8871-8931
GGGUCUCUCUAGGUAGAUCAGAUCAGAGCCUGGGAGCUCUCUGGCUAUCUGGGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF443095.1/8922-8982
GGGUCUCUCUAGGUAGACCAGAUAUGAGCCUGGGAGCUCUCUGGCUGCUUAGGGAACCCAC
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)

>AY074891.1/8871-8931
GGGUCUCUCUAGGUAGAUCAGAUCAGAGCCUGGGAGCUCUCUGGCUAUCUGGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF286239.1/8968-9027
GGGUCUCUCUUGUUGGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGCAGGGGAACCCAC
(.(....................................................)...)
(.((..(..............................................)))...)
(.((..(..............(..(..........)..)..............)))...)
(.((..(..............(..(..(......))..)..............)))...)
(.((..(.(............(..(..(......))..)...........).).))...)
(.((..(.(.....(..(...(..(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((..(..(......))..)).)).).....).).))...)
>AF254724.1/392-452
GGGUCUCUCUUGUUAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCUAGCUAGAGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF254695.1/392-452
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCCUUCUAGAGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF484519.1/8748-8808
GGGUCUCUCUUGUCAGACCAGAUUUGAGCCUGAGAGCUCUCUGGCCGACUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF457079.1/8708-8767
GGGUCUCUCUUAGUAGACCAGAUAGAGCCUGGGAGCUCUCUGGCUAGUAAGGGAACCCAU
(.(....................................................)...)
(.((..(..............................................)))...)
(.((..(..............(..(..........)..)..............)))...)
(.((..(..............(..(..(......))..)..............)))...)
(.((..(.(............(..(..(......))..)...........).).))...)
(.((..(.(.....(..(...(..(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((..(..(......))..)).)).).....).).))...)
>AF457068.1/8753-8812
GGGUCUCUCUUGUUAGACCAGAUAGAGUCUGAGAACUCUCUGGCUAGCGAGGGAACCCAC
(.(....................................................)...)
(.((..(..............................................)))...)
(.((..(..............(..(..........)..)..............)))...)
(.((..(..............(..(..(......))..)..............)))...)
(.((..(.(............(..(..(......))..)...........).).))...)
(.((..(.(.....(..(...(..(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((..(..(......))..)).)).).....).).))...)
>AF321523.1/455-515
GGGUCUCUCUAGGUAGGCCAGAUCUGAGCCCGGGAGCUCUCUGGCUAUAUGGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF196736.1/484-544
GGGUCUCUCUAGUUAGACCAGAUUCGAGCCUGGGAGCUCUCUGGCUAGUGGAGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........))..))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....))..))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....))..))...)
>AF102206.1/384-443
GGGUCUCUCUUGCUAGACCAGAUUGAGCCUGGGAGCUCUCUGACUAGCAGAGGAACCCAC
(.(....................................................)...)
(.((..(..............................................)))...)
(.((..(..............(..(..........)..)..............)))...)
(.((..(..............(..(..(......))..)..............)))...)
(.((..(.(............(..(..(......))..)...........))..))...)
(.((..(.(.....(..(...(..(..(......))..)...).).....))..))...)
(.((..(.(.....(..((.((..(..(......))..)).)).).....))..))...)
>AF411965.1/9548-9608
GGGUCUCUCUAGGCAGACCAGAUUUGAGCCCGGGAGCUCUCUGGCUAUCUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>U72122.1/306-366
UGGUCUCUCUUGUUAGACCAGAUCAGGGCCUGAGAGCUCUCUGGCUAACUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>U24479.1/327-387
GGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF443095.1/8922-8982
GGGUCUCUCUAGGUAGACCAGAUAUGAGCCUGGGAGCUCUCUGGCUGCUUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
(.(....................................................)...)
(.((..(..............................................)))...)
(.((..(..............(...(..........)..).............)))...)
(.((..(..............(...(..(......))..).............)))...)
(.((..(.(............(...(..(......))..)...........).)))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).)))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).)))...)
>AF442567.1/8145-8205
AGGUCUCUCUUGCUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAGUUAAGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>L28844.1/328-388
AGGUCUCUCUUGUUAGACCAGAUCCGAGCCUAGGAACUCUCUGGCUAACUAAGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>U51296.1/362-421
GGGUCUCUCUUGUUAGACCAGGUCGAGCCCGGGAGCUCUCUGGCUAGCAAGGGAACCCAC
(.(....................................................)...)
(.((..(..............................................)))...)
(.((..(..............(..(..........)..)..............)))...)
(.((..(..............(..(..(......))..)..............)))...)
(.((..(.(............(..(..(......))..)...........).).))...)
(.((..(.(.....(..(...(..(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((..(..(......))..)).)).).....).).))...)
>AF063176.1/456-516
GGCUCUCUCUAGUUGGACCAGAUCUGAGCCUAGAAGCUCUCUGGCUAACUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AY037273.1/8734-8794
AGGUCUCUCUAAGUAGACCAGAUCUGAGCCUAGGAGCUCUCUGGCUAACUAAGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
(.((..(.(.....(..((.((...(..(......))..)).)).).....).).))...)
>AF096779.1/454-514
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCUGGGAGCUCUAUGGCUAUUUGGGGAACCCAA
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....).).))...)
>AF484484.1/8728-8787
AGGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAGGGAAACCCAC
(.(....................................................)...)
(.((..(..............................................)))...)
(.((..(..............(..(..........)..)..............)))...)
(.((..(..............(..(..(......))..)..............)))...)
(.((..(.(............(..(..(......))..)...........))..))...)
(.((..(.(.....(..(...(..(..(......))..)...).).....))..))...)
>AF465242.1/9763-9822
GGGUCUCUCUAGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAGCUGAGAACCCAC
(.(....................................................)...)
(.((..(..............................................)))...)
(.((..(..............(...(..........)..).............)))...)
(.((..(..............(...(..(......))..).............)))...)
(.((..(.(............(...(..(......))..)...........)).))...)
(.((..(.(.....(..(...(...(..(......))..)...).).....)).))...)
>AF115393.1/8994-9054
GGGUCUCUCUUGCUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGUCAGGUAGAGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
>AF196762.1/466-526
GUGUCUCUCUAGUUAUACCAUAUCUGAUCCUGGGAGCUCUCUGGCUAGCUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
(.((..(.(............(...(..(......))..)...........).).))...)
>U72094.1/327-387
GGGUCUCUCUAGUUAGACCAGAUCUAAGCCUAGGAGCUCUCUAGCUAGCUAAAGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
>AF063150.1/456-516
GGGUCUCUCUGGUUAGACACAAUCUGAGCCUGGGAGCUCUCUGACUAGCUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
>AF457057.1/8730-8789
AGGUCUCUCUUAGUAGACCAGAUCGAGCCUAGGAGCUCUCUAGCUAGCAAAAGAACCCAC
(.(....................................................)...)
(.((..(..............................................)))...)
(.((..(..............(..(..........)..)..............)))...)
(.((..(..............(..(..(......))..)..............)))...)
>AF457086.1/8766-8825
GGGUCUCUCUUGGUAGACCAGAUCGAGCCUGGGAGCUCUCUGGUUGACAAGGGAACCCAC
(.(....................................................)...)
(.((..(..............................................)))...)
(.((..(..............(..(..........)..)..............)))...)
(.((..(..............(..(..(......))..)..............)))...)
>U72138.1/316-376
GGGUCUCUCUAGUUAGACCAGAUCUAAGCCUAAGAGCUCUCUGGCUGACUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
(.((..(..............(...(..(......))..).............).))...)
>AF254726.1/391-451
GGGUCUCUCUAGGUGGACCAGAUCUGAGCCUGGGCGCUCUCUGGCUACCUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
>AF286233.1/8890-8950
GGGUCUCUCUAGGUAGACCAGAUCUGAGCCCGAGUGCUCUCUGGCUAUCCAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
(.((..(..............(...(..........)..).............).))...)
>AF254684.1/394-453
GGGUCUCUCUAGGUAGACCAGGUCCAAGCCCGGGAGCUCCUGGCUAUCUAGGAAACCCAC
(.(....................................................)...)
(.((..(..............................................)))...)
>AF063179.1/457-517
GGGUCUCUCUAGUCAGACCAGAUCUGAGCCUGAAAGCUCUCUAGCUAGCUAGGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
>AF190128.1/8856-8916
GGGUCUCUUUGGUUAGACCAGAUCUGAGCCUGGGAGUUCUCUGGCUGGCCAAGGAACCCAC
(.(.....................................................)...)
(.((..(..............................................).))...)
>AF443094.1/8913-8973
GGGUCGCCUUAGGUAGACCAGAUCUGAGCCCGGGAGCUCUCUGGCUAUCUAGGGAACCCAC
(.(.....................................................)...)
>AF063151.1/456-516
GGGUCUUUCUGGUUAGACCGAAUCUGAGCCUGGGAGCUCUCUGGCUAGCUAGGGAAUCCAC
(.(.....................................................)...)
>AF457071.1/8730-8789
AAGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUUUAGCUAGCAAAGGAACCCAC
(.(....................................................)...)
>AF457060.1/8743-8802
AGGUCUCUCUUGUUGGACCAGAUAGAGCCUAGGAGCUCUCUGGCUAGCAAAAGAACCCAC
(.(....................................................)...)
>AF063164.1/454-514
GGGCUCCUCUGGUUAGACCAAAUCUGAGGCUGGGAGCUCUCUGGCUAGCUAGGGAACCCAC
(.(.....................................................)...)
>X52154.1/9632-9691
GGGUCUCUUUCACUGGACCAGAUUUGAGCCUGGGAGCUCUCUACCAGUGAAGGAACCCAC
(.(....................................................)...)
>AF457076.1/8775-8834
AAGUCUCUCUUGUUAGACCAGAUCGAGCCUAGGAGCUCUCUGACCAGCGAAGGAACCCAC
(.(....................................................)...)

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (N()CCA) < 0.001 25.6
DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
.........1.........2.........3.........4.........5.........6
123456789012345678901234567890123456789012345678901234567890
2 U(CU(C)) < 0.001 47.4
DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
.........1.........2.........3.........4.........5.........6
123456789012345678901234567890123456789012345678901234567890
3 ((C)UC)U < 0.001 30.3
DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
.........1.........2.........3.........4.........5.........6
123456789012345678901234567890123456789012345678901234567890
4 (.YNRGA.) < 0.001 31.7
DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
.........1.........2.........3.........4.........5.........6
123456789012345678901234567890123456789012345678901234567890
5 C(U(C)) < 0.001 18.4
DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
.........1.........2.........3.........4.........5.........6
123456789012345678901234567890123456789012345678901234567890
6 (GR()C) < 0.001 58.5
DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
.........1.........2.........3.........4.........5.........6
123456789012345678901234567890123456789012345678901234567890
7 ((Y)U)G < 0.001 1.14
DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
.........1.........2.........3.........4.........5.........6
123456789012345678901234567890123456789012345678901234567890
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 (N()CCA) < 0.001 25.6
DQ373065.1/9036-9095
GGGUCUCUCUUGUUAGACCAGAUUAGAGCCUGGGAGCUCUCUGGCUAGCAAGGAACCCAC
.........1.........2.........3.........4.........5.........6
123456789012345678901234567890123456789012345678901234567890
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).