D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

DUF805 RNA   (Rfam: RF03081)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
((A)AR)A
N(NA)G
R(NNA)N
(R()A)
100.0
100.0
100.0
100.0
N(NA)G

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99 %
(± 0.251 %)
Decision tree:

5-fold cross-validation: 91.6 %
(± 4.07 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 91.6 %
(± 4.07 %)
of URS0000D6A0A0_504472/1-67
URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
(.(((((((((((..))))))))))).).(((((((((.....)..))))..))))((((...))))
.........1.........2.........3.........4.........5.........6.......
1234567890123456789012345678901234567890123456789012345678901234567

abstract shape: ()()()

Number of sequences
Structure ORBs (out of 46) (%)
1 ((A)AR)A
 44 95.7
>URS0000D682DC_313595/1-68
ACAAAGUGGAGGCCAGAACCCAUUAGAAAAACGGCACGGAACCGAAAAGUGAUAUGAGUAGGACAAAA
.....................................................((.........)..)
>URS0000D6A9D5_12908/1-65
GGGCAAUGGAGCAGAUACCAUUUGAAAAACGGGCGAGUUCGAAAAGCCAGAGGAGUAGAGGAAAU
.((.....................)..).....................................
>URS0000D6C0C8_12908/1-66
UCAAAAUGGAGUCCAGAAACUAUUAUAAAACGGGGAGAAACCGAAAGCCAUACGAGUAGGAAAUCU
(.(.......................)..)....................................
>URS0000D6C052_12908/1-71
UGAUAGUGGAGUUCAGAUACCACUUUAAUAAACGGGGCGCAAUCCGAAAAGCCUUAUGAGUAAGAAAAUUU
............................(..(..............)..).....................
>URS0000D67946_12908/1-65
CAGAAAUGGAGUCCAGAAACCAUUACAAACGGGGUGAAACCGAAAACCUUCAGAGUAGACAAUUA
...........................((.............)..)...................
>URS0000D66C0E_485917/1-65
UAAUGGUGGAGCAGCAACCACUUGUAAAAACGGGCGGGCCGAAAAGCCAAAAGAGUAGGAACACA
...............................(.(................)..)...........
>URS0000D6A1C4_12908/1-69
AGAAAGUGGAGAAAAGAAACCACAAAAAAACUGGGUGUAUUCCGAAAGACCAUAAGAGUAGGAACAAAC
..(.(..................)..)..........................................
>URS0000D6BFC2_313595/1-65
AAAAAGUGGAGUCCAGACACCACAUAAACGGGGCGCAACUGAAAAGCCAAAUGAGUAAGACAGAU
.........................................((.............)..).....
>URS0000D65A1D_12908/1-68
AAAAAGUGGAGACAGUGCCCACUAAAAAAACGUGGCGGAAACCGAAAAGCCUAUGAGUAGGUAAUCUU
.(.(...................)..).........................................
>URS0000D66257_12908/1-68
UGGAAGUAGAGACCAGUAACUACUCAAAUAAACGGGUAUAACUAAAAAACCUUAAGAGUAAGGUGUAA
...........................((..............)..).....................
>URS0000D65E8C_411154/1-66
CGUCUUUGGAGUCCAGUGACCAUUUUAAACGGGGCGUAACCGAAAAGCCUUAUGAGUAGGAGUAUA
.......................(....(.............)..)....................
>URS0000D6CBA5_12908/1-68
AAAAAGUGGAGACCAGAAACCACUAUAAAAACGGGGCACCACCGAAAAGCCAAAUGAGUAGGACAAAA
..............................................((................)..)
>URS0000D6BC0A_313606/1-68
AACCAAAGGAGACCAGAAACCUUUAAACAAACGGGGCAGAACCGAAAAGCCAUACGAGUAGGAAAAUA
...............................................((.............)..)..
>URS0000D6C946_194439/1-68
UAAAUGUGGAGUCCAGAAACCACAAGAAAAACGGGGCGAUACCGAAAAGCCUUACGAGUAGGAAAACA
.(..(..................)..).........................................
>URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
............................................(.(...............)..).
>URS0000D6D1D2_382245/1-71
CCCCGGUGGAGACCGGAAACCACUUGAAUCAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
...............................................(.(.................)..)
>URS0000D68734_376686/1-67
AAUAGGUGGAGCAGAACCCACUAAAAAAAACGAGGCGGAUCCGAAAAGCCAUACGAGUAGGAAACCA
(.(...................)..).........................................
>URS0000D665DE_12908/1-71
AAUAAGUGGAGACUAGAGACCACUAAAAAAAACGGGACGGAUUCUGAAAAUCCUAAUGAGUAGGAAAAUUA
................................................(.(.............)..)...
>URS0000D6AB9B_12908/1-68
AAACAGUGGAGACCAGCGACCACUUUAAAAGCGGGGUGACACUGAAAUGCCAUAACAGUAGGGGAAAU
((........................)..)......................................
>URS0000D688A1_12908/1-71
AAAAAGUGGAGACCAGAACCCACUUUAAAAAACGGGGCGUAUUCUGAAAAGCCUUAUGAGUAGGAAAAAUU
(.(.......................)..).........................................
>URS0000D68925_12908/1-68
UAAGAGUGGAGUCCAGAUCCCACUAUAAAAACGGGGCGUCACCGAAAAGCCAAAUGAGUAGGUAUUAA
............................(.(.............)..)....................
>URS0000D6572A_12908/1-69
UAAUUGUAGAGACAAGGAACUACAUGAAAACACGGGGCGUUUCUGAAAAGCCAAAUGAGUAAGAGAAAA
(.(.......................)..).......................................
>URS0000D6C9ED_12908/1-70
AAAAAGUGGAGACCAGAAACCACUAAAAAAAAGGGGGCGACACCGAAAAGCCAAAUGAGUAAGGACAGCA
............................((...............)..).....................
>URS0000D69842_12908/1-69
UAAAAAAGGAGUCUAAGAACCUUUCAAAAAAAUAAGGCGGAACCGAAAAGCCAAAUGAGUAGGAUAUUU
(.(......................)..)........................................
>URS0000D6647C_12908/1-66
AAAAAGUGGAGACCAGAAACCACUCGAAAAACGGGCGAUACAAAAAAGUAAAUUAUUAUGAAAUUC
(.(.......................)..)....................................
>URS0000D68428_12908/1-68
AAAGAGUGGAGUUCAGCGACCACUUAAAAAAACGGGGCGACACCAAAAGCCUUACGAGUAGGAAAUUU
......(...(................)..).....................................
>URS0000D6607A_485918/1-65
ACCAGGUGGAGCAGCGACCACUCAAAAAACGGGCGAAGCCGAAAAGCCAGACGAGUAGGAACAAA
.....((.................)..).....................................
>URS0000D6BD45_376686/1-69
UAAAUGUGGAGCAGAACCCACUAUAAAAAACGAGGCGGAACCUGAAAAGCCUUAUGAGUAAGGAAAAUA
(.(.....................)..).........................................
>URS0000D67912_12908/1-69
AAAGUUUAGAGUCAAGAAAACUAAUUAAAAAACAGGGAGUUUCCGAAAAUCCAUAAGAGUAGGAUAAAC
......(.(.................)..).......................................
>URS0000D6965A_12908/1-69
UCUCCGUGAAGACCAGCCCCCACGUAAAAACGGGGCGUGACCCGAAAAGCCUGACGAGUAGGGACUUAA
............................((..............)..).....................
>URS0000D68C4F_12908/1-70
UUCACGUUGAGACCAGAAACAACUUUAAAAACUGAGAGUAUUCUGAAAAUCUUUAAGAGUAAGAACAAAA
.......((.................)..)........................................
>URS0000D68500_12908/1-68
AAAAAGUAGAAACCAGAAACUACUAAAAAAACGGGGAUAAAUCCGAAAAUCCAAAGAGUAGGAAAUUU
.(.(....................)..)........................................
>URS0000D67CC4_380703/1-71
CCCCGGUGGAGUCCGGACACCACUUGAAUAAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
...............................................(.(.................)..)
>URS0000D6CE2A_12908/1-71
CAAAAGUUGAGACCAGAAACAACUUUAAAAAACGGGGCGAAAUCCGAAAAGCCAUAUGAGUAGGAAAAUAU
.............................(.(..............)..).....................
>URS0000D65AA5_12908/1-68
CUUAUGUGGAGUCCAGCCACCACACCAAAAACGGGGCGUCACCGAAAAGCCAGAUGAGUAGGACCAUC
............................(.(.............)..)....................
>URS0000D6A849_12908/1-70
AAAAAGUGGAGACCAGCAACCAUUUUAAAAACGGGGCGAAAACUGAAAAGCCAAACGAGUAAGAAUAAAA
..............................................((..................)..)
>URS0000D66666_12908/1-68
AAAAUAUGGAGCCUAGAAGCCAUCAUAAAAACGAGGCGCAACUGAAAAGCCAAAUGAGUAAGAAAAAA
.(..(.....................)..)......................................
>URS0000D6BCA4_525257/1-65
CUUUCAUGGAGUUAAGAAACCACGUAAACAAAGCGGAACCGAAAAGCUAAACGAGUAGGAAGAAU
..........................................(.(..............)..)..
>URS0000D68490_12908/1-68
AGAAUGUGGAGUCCAGAUACCACCUAAAAAACGGGGCGUAACCGAAAAGCCAUACGAGUAGGAAAACU
...............................................((.............)..)..
>URS0000D66BC4_12908/1-65
AUAAAGUGGAGACUAGAACCCACUUAAAAAAAAAGGGCGUAUUCCGAAAAGCCUAAUGAGUAGGA
............................((................)..)...............
>URS0000D6CF98_12908/1-71
CCCCGGUGGAGUCCAGACACCACUUGAAUAAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
...............................................(.(.................)..)
>URS0000D669E5_269798/1-68
UUACCUUGGAGUCCAGAAACCAUAUCAAAAACGGGGCGAUACUGAAAAGCCAUACGAGUAGGAAUUAA
..(..(....................)..)......................................
>URS0000D6D137_194439/1-67
AAAUAAUGGAGACCAGCGACCAUUUCAAAACGGGGCGACACCGAAAAGCCAAACGAGUAGGGACAUA
...........................(.(.............)..)....................
>URS0000D67100_12908/1-71
UAAUAGCUGAGUCCAGACACAUCUACAAAAAAAACGGGGCGUUACUGCGAAGCCAUAUUAGUAUUAUAAUA
(.(.......................)..).........................................
2 ((A)AR)A
N(NA)G
 39 84.8
>URS0000D6A9D5_12908/1-65
GGGCAAUGGAGCAGAUACCAUUUGAAAAACGGGCGAGUUCGAAAAGCCAGAGGAGUAGAGGAAAU
..........(..)....................(.(....)..)....................
>URS0000D6BCA4_525257/1-65
CUUUCAUGGAGUUAAGAAACCACGUAAACAAAGCGGAACCGAAAAGCUAAACGAGUAGGAAGAAU
............(..)..........................(.(..............)..)..
>URS0000D66C0E_485917/1-65
UAAUGGUGGAGCAGCAACCACUUGUAAAAACGGGCGGGCCGAAAAGCCAAAAGAGUAGGAACACA
..........(..).................(.(................)..)...........
>URS0000D6D1D2_382245/1-71
CCCCGGUGGAGACCGGAAACCACUUGAAUCAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
.......(..)....................................(.(.................)..)
>URS0000D6CE2A_12908/1-71
CAAAAGUUGAGACCAGAAACAACUUUAAAAAACGGGGCGAAAUCCGAAAAGCCAUAUGAGUAGGAAAAUAU
............(..).............(.(..............)..).....................
>URS0000D6CBA5_12908/1-68
AAAAAGUGGAGACCAGAAACCACUAUAAAAACGGGGCACCACCGAAAAGCCAAAUGAGUAGGACAAAA
............(..)..............................((................)..)
>URS0000D68734_376686/1-67
AAUAGGUGGAGCAGAACCCACUAAAAAAAACGAGGCGGAUCCGAAAAGCCAUACGAGUAGGAAACCA
..............................(..)..((.....)..)....................
>URS0000D67CC4_380703/1-71
CCCCGGUGGAGUCCGGACACCACUUGAAUAAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
........................................................(..)...((..)..)
>URS0000D6C052_12908/1-71
UGAUAGUGGAGUUCAGAUACCACUUUAAUAAACGGGGCGCAAUCCGAAAAGCCUUAUGAGUAAGAAAAUUU
............(..)............(..(..............)..).....................
>URS0000D67946_12908/1-65
CAGAAAUGGAGUCCAGAAACCAUUACAAACGGGGUGAAACCGAAAACCUUCAGAGUAGACAAUUA
............(..)...........((.............)..)...................
>URS0000D6607A_485918/1-65
ACCAGGUGGAGCAGCGACCACUCAAAAAACGGGCGAAGCCGAAAAGCCAGACGAGUAGGAACAAA
.(..)...............((...)..)....................................
>URS0000D6C9ED_12908/1-70
AAAAAGUGGAGACCAGAAACCACUAAAAAAAAGGGGGCGACACCGAAAAGCCAAAUGAGUAAGGACAGCA
............(..)............((...............)..).....................
>URS0000D6D137_194439/1-67
AAAUAAUGGAGACCAGCGACCAUUUCAAAACGGGGCGACACCGAAAAGCCAAACGAGUAGGGACAUA
............(..)...........(.(.............)..)....................
>URS0000D682DC_313595/1-68
ACAAAGUGGAGGCCAGAACCCAUUAGAAAAACGGCACGGAACCGAAAAGUGAUAUGAGUAGGACAAAA
............(..).....................................((.........)..)
>URS0000D66BC4_12908/1-65
AUAAAGUGGAGACUAGAACCCACUUAAAAAAAAAGGGCGUAUUCCGAAAAGCCUAAUGAGUAGGA
............(..)............((................)..)...............
>URS0000D66257_12908/1-68
UGGAAGUAGAGACCAGUAACUACUCAAAUAAACGGGUAUAACUAAAAAACCUUAAGAGUAAGGUGUAA
............(..)...........((..............)..).....................
>URS0000D6C946_194439/1-68
UAAAUGUGGAGUCCAGAAACCACAAGAAAAACGGGGCGAUACCGAAAAGCCUUACGAGUAGGAAAACA
............(..).....................((.....)..)....................
>URS0000D6BFC2_313595/1-65
AAAAAGUGGAGUCCAGACACCACAUAAACGGGGCGCAACUGAAAAGCCAAAUGAGUAAGACAGAU
............(..).........................((.............)..).....
>URS0000D6A849_12908/1-70
AAAAAGUGGAGACCAGCAACCAUUUUAAAAACGGGGCGAAAACUGAAAAGCCAAACGAGUAAGAAUAAAA
............(..)..............................((..................)..)
>URS0000D6AB9B_12908/1-68
AAACAGUGGAGACCAGCGACCACUUUAAAAGCGGGGUGACACUGAAAUGCCAUAACAGUAGGGGAAAU
.......(..)......((.......)..)......................................
>URS0000D6647C_12908/1-66
AAAAAGUGGAGACCAGAAACCACUCGAAAAACGGGCGAUACAAAAAAGUAAAUUAUUAUGAAAUUC
............(..).....................((...)..)....................
>URS0000D66666_12908/1-68
AAAAUAUGGAGCCUAGAAGCCAUCAUAAAAACGAGGCGCAACUGAAAAGCCAAAUGAGUAAGAAAAAA
............(..).....................((.....)..)....................
>URS0000D65AA5_12908/1-68
CUUAUGUGGAGUCCAGCCACCACACCAAAAACGGGGCGUCACCGAAAAGCCAGAUGAGUAGGACCAUC
............(..)............(.(.............)..)....................
>URS0000D68925_12908/1-68
UAAGAGUGGAGUCCAGAUCCCACUAUAAAAACGGGGCGUCACCGAAAAGCCAAAUGAGUAGGUAUUAA
............(..)............(.(.............)..)....................
>URS0000D6BD45_376686/1-69
UAAAUGUGGAGCAGAACCCACUAUAAAAAACGAGGCGGAACCUGAAAAGCCUUAUGAGUAAGGAAAAUA
..........(..)......................((......)..).....................
>URS0000D6A1C4_12908/1-69
AGAAAGUGGAGAAAAGAAACCACAAAAAAACUGGGUGUAUUCCGAAAGACCAUAAGAGUAGGAACAAAC
............(..)............(.(......................)..)............
>URS0000D68500_12908/1-68
AAAAAGUAGAAACCAGAAACUACUAAAAAAACGGGGAUAAAUCCGAAAAUCCAAAGAGUAGGAAAUUU
............(..)............(...(....................)..)...........
>URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
............(..)............................(.(...............)..).
>URS0000D69842_12908/1-69
UAAAAAAGGAGUCUAAGAACCUUUCAAAAAAAUAAGGCGGAACCGAAAAGCCAAAUGAGUAGGAUAUUU
................................(..)..((.....)..)....................
>URS0000D6CF98_12908/1-71
CCCCGGUGGAGUCCAGACACCACUUGAAUAAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
............(..)...............................(.(.................)..)
>URS0000D68C4F_12908/1-70
UUCACGUUGAGACCAGAAACAACUUUAAAAACUGAGAGUAUUCUGAAAAUCUUUAAGAGUAAGAACAAAA
............(..)........................((...)..).....................
>URS0000D6965A_12908/1-69
UCUCCGUGAAGACCAGCCCCCACGUAAAAACGGGGCGUGACCCGAAAAGCCUGACGAGUAGGGACUUAA
............(..)............((..............)..).....................
>URS0000D665DE_12908/1-71
AAUAAGUGGAGACUAGAGACCACUAAAAAAAACGGGACGGAUUCUGAAAAUCCUAAUGAGUAGGAAAAUUA
..............(..)..............................(.(.............)..)...
>URS0000D68428_12908/1-68
AAAGAGUGGAGUUCAGCGACCACUUAAAAAAACGGGGCGACACCAAAAGCCUUACGAGUAGGAAAUUU
..(..).................((...)..)....................................
>URS0000D68490_12908/1-68
AGAAUGUGGAGUCCAGAUACCACCUAAAAAACGGGGCGUAACCGAAAAGCCAUACGAGUAGGAAAACU
............(..)...............................((.............)..)..
>URS0000D65A1D_12908/1-68
AAAAAGUGGAGACAGUGCCCACUAAAAAAACGUGGCGGAAACCGAAAAGCCUAUGAGUAGGUAAUCUU
...........(..)..................((.........)..)....................
>URS0000D6BC0A_313606/1-68
AACCAAAGGAGACCAGAAACCUUUAAACAAACGGGGCAGAACCGAAAAGCCAUACGAGUAGGAAAAUA
...................................(..)........((.............)..)..
>URS0000D67912_12908/1-69
AAAGUUUAGAGUCAAGAAAACUAAUUAAAAAACAGGGAGUUUCCGAAAAUCCAUAAGAGUAGGAUAAAC
............(..)...............((.....................)..)...........
>URS0000D65E8C_411154/1-66
CGUCUUUGGAGUCCAGUGACCAUUUUAAACGGGGCGUAACCGAAAAGCCUUAUGAGUAGGAGUAUA
............(..)...................((.....)..)....................
3 ((A)AR)A
N(NA)G
R(NNA)N
 29 63.0
>URS0000D68428_12908/1-68
AAAGAGUGGAGUUCAGCGACCACUUAAAAAAACGGGGCGACACCAAAAGCCUUACGAGUAGGAAAUUU
..(..).................((...)..)......(...).........................
>URS0000D6BCA4_525257/1-65
CUUUCAUGGAGUUAAGAAACCACGUAAACAAAGCGGAACCGAAAAGCUAAACGAGUAGGAAGAAU
............(..)...............((........)..)............(...)...
>URS0000D66BC4_12908/1-65
AUAAAGUGGAGACUAGAACCCACUUAAAAAAAAAGGGCGUAUUCCGAAAAGCCUAAUGAGUAGGA
............(..)............((................)..)........(...)..
>URS0000D6A849_12908/1-70
AAAAAGUGGAGACCAGCAACCAUUUUAAAAACGGGGCGAAAACUGAAAAGCCAAACGAGUAAGAAUAAAA
............(..).....................(.(.....)..)............(...)....
>URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
............(..)....................((.....)..)............(...)...
>URS0000D6647C_12908/1-66
AAAAAGUGGAGACCAGAAACCACUCGAAAAACGGGCGAUACAAAAAAGUAAAUUAUUAUGAAAUUC
............(..).....................((...)..).....(...)..........
>URS0000D68C4F_12908/1-70
UUCACGUUGAGACCAGAAACAACUUUAAAAACUGAGAGUAUUCUGAAAAUCUUUAAGAGUAAGAACAAAA
............(..)........................((...)..)............(...)....
>URS0000D66C0E_485917/1-65
UAAUGGUGGAGCAGCAACCACUUGUAAAAACGGGCGGGCCGAAAAGCCAAAAGAGUAGGAACACA
..........(..).................(...(............)..).......(...).
>URS0000D6BFC2_313595/1-65
AAAAAGUGGAGUCCAGACACCACAUAAACGGGGCGCAACUGAAAAGCCAAAUGAGUAAGACAGAU
............(..)..................((.....)..).............(...)..
>URS0000D65AA5_12908/1-68
CUUAUGUGGAGUCCAGCCACCACACCAAAAACGGGGCGUCACCGAAAAGCCAGAUGAGUAGGACCAUC
............(..).....................((.....)..)..............(...).
>URS0000D6607A_485918/1-65
ACCAGGUGGAGCAGCGACCACUCAAAAAACGGGCGAAGCCGAAAAGCCAGACGAGUAGGAACAAA
.(..)...............((...)..)............(...)...................
>URS0000D6A9D5_12908/1-65
GGGCAAUGGAGCAGAUACCAUUUGAAAAACGGGCGAGUUCGAAAAGCCAGAGGAGUAGAGGAAAU
..........(..)....................(.(....)..).............(...)..
>URS0000D68490_12908/1-68
AGAAUGUGGAGUCCAGAUACCACCUAAAAAACGGGGCGUAACCGAAAAGCCAUACGAGUAGGAAAACU
............(..).....................((.....)..)............(...)...
>URS0000D6CE2A_12908/1-71
CAAAAGUUGAGACCAGAAACAACUUUAAAAAACGGGGCGAAAUCCGAAAAGCCAUAUGAGUAGGAAAAUAU
............(..).............(.(..............)..)............(...)....
>URS0000D6C052_12908/1-71
UGAUAGUGGAGUUCAGAUACCACUUUAAUAAACGGGGCGCAAUCCGAAAAGCCUUAUGAGUAAGAAAAUUU
............(..)............(..(..............)..).............(...)...
>URS0000D68925_12908/1-68
UAAGAGUGGAGUCCAGAUCCCACUAUAAAAACGGGGCGUCACCGAAAAGCCAAAUGAGUAGGUAUUAA
............(..)............(.(.............)..)............(...)...
>URS0000D6BD45_376686/1-69
UAAAUGUGGAGCAGAACCCACUAUAAAAAACGAGGCGGAACCUGAAAAGCCUUAUGAGUAAGGAAAAUA
..........(..)......................((......)..).............(...)...
>URS0000D65E8C_411154/1-66
CGUCUUUGGAGUCCAGUGACCAUUUUAAACGGGGCGUAACCGAAAAGCCUUAUGAGUAGGAGUAUA
............(..)...................((.....)..)..............(...).
>URS0000D6C946_194439/1-68
UAAAUGUGGAGUCCAGAAACCACAAGAAAAACGGGGCGAUACCGAAAAGCCUUACGAGUAGGAAAACA
............(..).....................((.....)..)............(...)...
>URS0000D6965A_12908/1-69
UCUCCGUGAAGACCAGCCCCCACGUAAAAACGGGGCGUGACCCGAAAAGCCUGACGAGUAGGGACUUAA
............(..)............((..............)..)............(...)....
>URS0000D6C9ED_12908/1-70
AAAAAGUGGAGACCAGAAACCACUAAAAAAAAGGGGGCGACACCGAAAAGCCAAAUGAGUAAGGACAGCA
............(..)............((...............)..)..............(...)..
>URS0000D6AB9B_12908/1-68
AAACAGUGGAGACCAGCGACCACUUUAAAAGCGGGGUGACACUGAAAUGCCAUAACAGUAGGGGAAAU
.......(..)......((.......)..).......(...)..........................
>URS0000D66257_12908/1-68
UGGAAGUAGAGACCAGUAACUACUCAAAUAAACGGGUAUAACUAAAAAACCUUAAGAGUAAGGUGUAA
............(..)...........((..............)..)......(...)..........
>URS0000D6CBA5_12908/1-68
AAAAAGUGGAGACCAGAAACCACUAUAAAAACGGGGCACCACCGAAAAGCCAAAUGAGUAGGACAAAA
............(..)............(.(.............)..).............(...)..
>URS0000D6BC0A_313606/1-68
AACCAAAGGAGACCAGAAACCUUUAAACAAACGGGGCAGAACCGAAAAGCCAUACGAGUAGGAAAAUA
............(..).....................((.....)..)............(...)...
>URS0000D665DE_12908/1-71
AAUAAGUGGAGACUAGAGACCACUAAAAAAAACGGGACGGAUUCUGAAAAUCCUAAUGAGUAGGAAAAUUA
............(..).........................((...)..)............(...)....
>URS0000D67946_12908/1-65
CAGAAAUGGAGUCCAGAAACCAUUACAAACGGGGUGAAACCGAAAACCUUCAGAGUAGACAAUUA
............(..)................((........)..)............(...)..
>URS0000D66666_12908/1-68
AAAAUAUGGAGCCUAGAAGCCAUCAUAAAAACGAGGCGCAACUGAAAAGCCAAAUGAGUAAGAAAAAA
............(..).....................((.....)..)............(...)...
>URS0000D6D137_194439/1-67
AAAUAAUGGAGACCAGCGACCAUUUCAAAACGGGGCGACACCGAAAAGCCAAACGAGUAGGGACAUA
............(..)...........(.(.............)..).....(...)..........
4 ((A)AR)A
N(NA)G
R(NNA)N
(R()A)
 18 39.1
>URS0000D66BC4_12908/1-65
AUAAAGUGGAGACUAGAACCCACUUAAAAAAAAAGGGCGUAUUCCGAAAAGCCUAAUGAGUAGGA
.(.(........(..)........).).((................)..)........(...)..
>URS0000D665DE_12908/1-71
AAUAAGUGGAGACUAGAGACCACUAAAAAAAACGGGACGGAUUCUGAAAAUCCUAAUGAGUAGGAAAAUUA
(.(.........(..)..........).)............((...)..)............(...)....
>URS0000D6CBA5_12908/1-68
AAAAAGUGGAGACCAGAAACCACUAUAAAAACGGGGCACCACCGAAAAGCCAAAUGAGUAGGACAAAA
..(.(.......(..).......).)..(.(.............)..).............(...)..
>URS0000D6BC0A_313606/1-68
AACCAAAGGAGACCAGAAACCUUUAAACAAACGGGGCAGAACCGAAAAGCCAUACGAGUAGGAAAAUA
(.(.........(..).........).).........((.....)..)............(...)...
>URS0000D6BFC2_313595/1-65
AAAAAGUGGAGUCCAGACACCACAUAAACGGGGCGCAACUGAAAAGCCAAAUGAGUAAGACAGAU
(.(.........(..)........).).......((.....)..).............(...)..
>URS0000D6CE2A_12908/1-71
CAAAAGUUGAGACCAGAAACAACUUUAAAAAACGGGGCGAAAUCCGAAAAGCCAUAUGAGUAGGAAAAUAU
(.(.........(..).........).).(.(..............)..)............(...)....
>URS0000D66C0E_485917/1-65
UAAUGGUGGAGCAGCAACCACUUGUAAAAACGGGCGGGCCGAAAAGCCAAAAGAGUAGGAACACA
(.(.......(..)..........).)....(...(............)..).......(...).
>URS0000D6A849_12908/1-70
AAAAAGUGGAGACCAGCAACCAUUUUAAAAACGGGGCGAAAACUGAAAAGCCAAACGAGUAAGAAUAAAA
(.(.........(..).........).).........(.(.....)..)............(...)....
>URS0000D65AA5_12908/1-68
CUUAUGUGGAGUCCAGCCACCACACCAAAAACGGGGCGUCACCGAAAAGCCAGAUGAGUAGGACCAUC
..(.(.......(..)..........).)........((.....)..)..............(...).
>URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
(.(.........(..).........).)........((.....)..)............(...)...
>URS0000D68490_12908/1-68
AGAAUGUGGAGUCCAGAUACCACCUAAAAAACGGGGCGUAACCGAAAAGCCAUACGAGUAGGAAAACU
(.(.........(..).........).).........((.....)..)............(...)...
>URS0000D6C052_12908/1-71
UGAUAGUGGAGUUCAGAUACCACUUUAAUAAACGGGGCGCAAUCCGAAAAGCCUUAUGAGUAAGAAAAUUU
(.(.........(..).........).)(..(..............)..).............(...)...
>URS0000D66257_12908/1-68
UGGAAGUAGAGACCAGUAACUACUCAAAUAAACGGGUAUAACUAAAAAACCUUAAGAGUAAGGUGUAA
(.(.........(..)........).)((..............)..)......(...)..........
>URS0000D67946_12908/1-65
CAGAAAUGGAGUCCAGAAACCAUUACAAACGGGGUGAAACCGAAAACCUUCAGAGUAGACAAUUA
..(.(.......(..).......).)......((........)..)............(...)..
>URS0000D6BD45_376686/1-69
UAAAUGUGGAGCAGAACCCACUAUAAAAAACGAGGCGGAACCUGAAAAGCCUUAUGAGUAAGGAAAAUA
(.(.......(..).........).)..........((......)..).............(...)...
>URS0000D66666_12908/1-68
AAAAUAUGGAGCCUAGAAGCCAUCAUAAAAACGAGGCGCAACUGAAAAGCCAAAUGAGUAAGAAAAAA
(.(.........(..).........).).........((.....)..)............(...)...
>URS0000D68925_12908/1-68
UAAGAGUGGAGUCCAGAUCCCACUAUAAAAACGGGGCGUCACCGAAAAGCCAAAUGAGUAGGUAUUAA
..(.(.......(..).......).)..(.(.............)..)............(...)...
>URS0000D6C946_194439/1-68
UAAAUGUGGAGUCCAGAAACCACAAGAAAAACGGGGCGAUACCGAAAAGCCUUACGAGUAGGAAAACA
(.(.........(..).........).).........((.....)..)............(...)...

>URS0000D6C052_12908/1-71
UGAUAGUGGAGUUCAGAUACCACUUUAAUAAACGGGGCGCAAUCCGAAAAGCCUUAUGAGUAAGAAAAUUU
............................(..(..............)..).....................
............(..)............(..(..............)..).....................
............(..)............(..(..............)..).............(...)...
(.(.........(..).........).)(..(..............)..).............(...)...
>URS0000D67946_12908/1-65
CAGAAAUGGAGUCCAGAAACCAUUACAAACGGGGUGAAACCGAAAACCUUCAGAGUAGACAAUUA
...........................((.............)..)...................
............(..)...........((.............)..)...................
............(..)................((........)..)............(...)..
..(.(.......(..).......).)......((........)..)............(...)..
>URS0000D66C0E_485917/1-65
UAAUGGUGGAGCAGCAACCACUUGUAAAAACGGGCGGGCCGAAAAGCCAAAAGAGUAGGAACACA
...............................(.(................)..)...........
..........(..).................(.(................)..)...........
..........(..).................(...(............)..).......(...).
(.(.......(..)..........).)....(...(............)..).......(...).
>URS0000D6BFC2_313595/1-65
AAAAAGUGGAGUCCAGACACCACAUAAACGGGGCGCAACUGAAAAGCCAAAUGAGUAAGACAGAU
.........................................((.............)..).....
............(..).........................((.............)..).....
............(..)..................((.....)..).............(...)..
(.(.........(..)........).).......((.....)..).............(...)..
>URS0000D66257_12908/1-68
UGGAAGUAGAGACCAGUAACUACUCAAAUAAACGGGUAUAACUAAAAAACCUUAAGAGUAAGGUGUAA
...........................((..............)..).....................
............(..)...........((..............)..).....................
............(..)...........((..............)..)......(...)..........
(.(.........(..)........).)((..............)..)......(...)..........
>URS0000D6CBA5_12908/1-68
AAAAAGUGGAGACCAGAAACCACUAUAAAAACGGGGCACCACCGAAAAGCCAAAUGAGUAGGACAAAA
..............................................((................)..)
............(..)..............................((................)..)
............(..)............(.(.............)..).............(...)..
..(.(.......(..).......).)..(.(.............)..).............(...)..
>URS0000D6BC0A_313606/1-68
AACCAAAGGAGACCAGAAACCUUUAAACAAACGGGGCAGAACCGAAAAGCCAUACGAGUAGGAAAAUA
...............................................((.............)..)..
...................................(..)........((.............)..)..
............(..).....................((.....)..)............(...)...
(.(.........(..).........).).........((.....)..)............(...)...
>URS0000D6C946_194439/1-68
UAAAUGUGGAGUCCAGAAACCACAAGAAAAACGGGGCGAUACCGAAAAGCCUUACGAGUAGGAAAACA
.(..(..................)..).........................................
............(..).....................((.....)..)....................
............(..).....................((.....)..)............(...)...
(.(.........(..).........).).........((.....)..)............(...)...
>URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
............................................(.(...............)..).
............(..)............................(.(...............)..).
............(..)....................((.....)..)............(...)...
(.(.........(..).........).)........((.....)..)............(...)...
>URS0000D665DE_12908/1-71
AAUAAGUGGAGACUAGAGACCACUAAAAAAAACGGGACGGAUUCUGAAAAUCCUAAUGAGUAGGAAAAUUA
................................................(.(.............)..)...
..............(..)..............................(.(.............)..)...
............(..).........................((...)..)............(...)....
(.(.........(..)..........).)............((...)..)............(...)....
>URS0000D68925_12908/1-68
UAAGAGUGGAGUCCAGAUCCCACUAUAAAAACGGGGCGUCACCGAAAAGCCAAAUGAGUAGGUAUUAA
............................(.(.............)..)....................
............(..)............(.(.............)..)....................
............(..)............(.(.............)..)............(...)...
..(.(.......(..).......).)..(.(.............)..)............(...)...
>URS0000D6BD45_376686/1-69
UAAAUGUGGAGCAGAACCCACUAUAAAAAACGAGGCGGAACCUGAAAAGCCUUAUGAGUAAGGAAAAUA
(.(.....................)..).........................................
..........(..)......................((......)..).....................
..........(..)......................((......)..).............(...)...
(.(.......(..).........).)..........((......)..).............(...)...
>URS0000D6CE2A_12908/1-71
CAAAAGUUGAGACCAGAAACAACUUUAAAAAACGGGGCGAAAUCCGAAAAGCCAUAUGAGUAGGAAAAUAU
.............................(.(..............)..).....................
............(..).............(.(..............)..).....................
............(..).............(.(..............)..)............(...)....
(.(.........(..).........).).(.(..............)..)............(...)....
>URS0000D65AA5_12908/1-68
CUUAUGUGGAGUCCAGCCACCACACCAAAAACGGGGCGUCACCGAAAAGCCAGAUGAGUAGGACCAUC
............................(.(.............)..)....................
............(..)............(.(.............)..)....................
............(..).....................((.....)..)..............(...).
..(.(.......(..)..........).)........((.....)..)..............(...).
>URS0000D6A849_12908/1-70
AAAAAGUGGAGACCAGCAACCAUUUUAAAAACGGGGCGAAAACUGAAAAGCCAAACGAGUAAGAAUAAAA
..............................................((..................)..)
............(..)..............................((..................)..)
............(..).....................(.(.....)..)............(...)....
(.(.........(..).........).).........(.(.....)..)............(...)....
>URS0000D66666_12908/1-68
AAAAUAUGGAGCCUAGAAGCCAUCAUAAAAACGAGGCGCAACUGAAAAGCCAAAUGAGUAAGAAAAAA
.(..(.....................)..)......................................
............(..).....................((.....)..)....................
............(..).....................((.....)..)............(...)...
(.(.........(..).........).).........((.....)..)............(...)...
>URS0000D68490_12908/1-68
AGAAUGUGGAGUCCAGAUACCACCUAAAAAACGGGGCGUAACCGAAAAGCCAUACGAGUAGGAAAACU
...............................................((.............)..)..
............(..)...............................((.............)..)..
............(..).....................((.....)..)............(...)...
(.(.........(..).........).).........((.....)..)............(...)...
>URS0000D66BC4_12908/1-65
AUAAAGUGGAGACUAGAACCCACUUAAAAAAAAAGGGCGUAUUCCGAAAAGCCUAAUGAGUAGGA
............................((................)..)...............
............(..)............((................)..)...............
............(..)............((................)..)........(...)..
.(.(........(..)........).).((................)..)........(...)..
>URS0000D6A9D5_12908/1-65
GGGCAAUGGAGCAGAUACCAUUUGAAAAACGGGCGAGUUCGAAAAGCCAGAGGAGUAGAGGAAAU
.((.....................)..).....................................
..........(..)....................(.(....)..)....................
..........(..)....................(.(....)..).............(...)..
>URS0000D65E8C_411154/1-66
CGUCUUUGGAGUCCAGUGACCAUUUUAAACGGGGCGUAACCGAAAAGCCUUAUGAGUAGGAGUAUA
.......................(....(.............)..)....................
............(..)...................((.....)..)....................
............(..)...................((.....)..)..............(...).
>URS0000D6AB9B_12908/1-68
AAACAGUGGAGACCAGCGACCACUUUAAAAGCGGGGUGACACUGAAAUGCCAUAACAGUAGGGGAAAU
((........................)..)......................................
.......(..)......((.......)..)......................................
.......(..)......((.......)..).......(...)..........................
>URS0000D6C9ED_12908/1-70
AAAAAGUGGAGACCAGAAACCACUAAAAAAAAGGGGGCGACACCGAAAAGCCAAAUGAGUAAGGACAGCA
............................((...............)..).....................
............(..)............((...............)..).....................
............(..)............((...............)..)..............(...)..
>URS0000D6647C_12908/1-66
AAAAAGUGGAGACCAGAAACCACUCGAAAAACGGGCGAUACAAAAAAGUAAAUUAUUAUGAAAUUC
(.(.......................)..)....................................
............(..).....................((...)..)....................
............(..).....................((...)..).....(...)..........
>URS0000D68428_12908/1-68
AAAGAGUGGAGUUCAGCGACCACUUAAAAAAACGGGGCGACACCAAAAGCCUUACGAGUAGGAAAUUU
......(...(................)..).....................................
..(..).................((...)..)....................................
..(..).................((...)..)......(...).........................
>URS0000D6607A_485918/1-65
ACCAGGUGGAGCAGCGACCACUCAAAAAACGGGCGAAGCCGAAAAGCCAGACGAGUAGGAACAAA
.....((.................)..).....................................
.(..)...............((...)..)....................................
.(..)...............((...)..)............(...)...................
>URS0000D6965A_12908/1-69
UCUCCGUGAAGACCAGCCCCCACGUAAAAACGGGGCGUGACCCGAAAAGCCUGACGAGUAGGGACUUAA
............................((..............)..).....................
............(..)............((..............)..).....................
............(..)............((..............)..)............(...)....
>URS0000D68C4F_12908/1-70
UUCACGUUGAGACCAGAAACAACUUUAAAAACUGAGAGUAUUCUGAAAAUCUUUAAGAGUAAGAACAAAA
.......((.................)..)........................................
............(..)........................((...)..).....................
............(..)........................((...)..)............(...)....
>URS0000D6BCA4_525257/1-65
CUUUCAUGGAGUUAAGAAACCACGUAAACAAAGCGGAACCGAAAAGCUAAACGAGUAGGAAGAAU
..........................................(.(..............)..)..
............(..)..........................(.(..............)..)..
............(..)...............((........)..)............(...)...
>URS0000D6D137_194439/1-67
AAAUAAUGGAGACCAGCGACCAUUUCAAAACGGGGCGACACCGAAAAGCCAAACGAGUAGGGACAUA
...........................(.(.............)..)....................
............(..)...........(.(.............)..)....................
............(..)...........(.(.............)..).....(...)..........
>URS0000D682DC_313595/1-68
ACAAAGUGGAGGCCAGAACCCAUUAGAAAAACGGCACGGAACCGAAAAGUGAUAUGAGUAGGACAAAA
.....................................................((.........)..)
............(..).....................................((.........)..)
>URS0000D6A1C4_12908/1-69
AGAAAGUGGAGAAAAGAAACCACAAAAAAACUGGGUGUAUUCCGAAAGACCAUAAGAGUAGGAACAAAC
..(.(..................)..)..........................................
............(..)............(.(......................)..)............
>URS0000D65A1D_12908/1-68
AAAAAGUGGAGACAGUGCCCACUAAAAAAACGUGGCGGAAACCGAAAAGCCUAUGAGUAGGUAAUCUU
.(.(...................)..).........................................
...........(..)..................((.........)..)....................
>URS0000D6D1D2_382245/1-71
CCCCGGUGGAGACCGGAAACCACUUGAAUCAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
...............................................(.(.................)..)
.......(..)....................................(.(.................)..)
>URS0000D68734_376686/1-67
AAUAGGUGGAGCAGAACCCACUAAAAAAAACGAGGCGGAUCCGAAAAGCCAUACGAGUAGGAAACCA
(.(...................)..).........................................
..............................(..)..((.....)..)....................
>URS0000D69842_12908/1-69
UAAAAAAGGAGUCUAAGAACCUUUCAAAAAAAUAAGGCGGAACCGAAAAGCCAAAUGAGUAGGAUAUUU
(.(......................)..)........................................
................................(..)..((.....)..)....................
>URS0000D67912_12908/1-69
AAAGUUUAGAGUCAAGAAAACUAAUUAAAAAACAGGGAGUUUCCGAAAAUCCAUAAGAGUAGGAUAAAC
......(.(.................)..).......................................
............(..)...............((.....................)..)...........
>URS0000D68500_12908/1-68
AAAAAGUAGAAACCAGAAACUACUAAAAAAACGGGGAUAAAUCCGAAAAUCCAAAGAGUAGGAAAUUU
.(.(....................)..)........................................
............(..)............(...(....................)..)...........
>URS0000D67CC4_380703/1-71
CCCCGGUGGAGUCCGGACACCACUUGAAUAAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
...............................................(.(.................)..)
........................................................(..)...((..)..)
>URS0000D6CF98_12908/1-71
CCCCGGUGGAGUCCAGACACCACUUGAAUAAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
...............................................(.(.................)..)
............(..)...............................(.(.................)..)
>URS0000D6C0C8_12908/1-66
UCAAAAUGGAGUCCAGAAACUAUUAUAAAACGGGGAGAAACCGAAAGCCAUACGAGUAGGAAAUCU
(.(.......................)..)....................................
>URS0000D688A1_12908/1-71
AAAAAGUGGAGACCAGAACCCACUUUAAAAAACGGGGCGUAUUCUGAAAAGCCUUAUGAGUAGGAAAAAUU
(.(.......................)..).........................................
>URS0000D6572A_12908/1-69
UAAUUGUAGAGACAAGGAACUACAUGAAAACACGGGGCGUUUCUGAAAAGCCAAAUGAGUAAGAGAAAA
(.(.......................)..).......................................
>URS0000D669E5_269798/1-68
UUACCUUGGAGUCCAGAAACCAUAUCAAAAACGGGGCGAUACUGAAAAGCCAUACGAGUAGGAAUUAA
..(..(....................)..)......................................
>URS0000D67100_12908/1-71
UAAUAGCUGAGUCCAGACACAUCUACAAAAAAAACGGGGCGUUACUGCGAAGCCAUAUUAGUAUUAUAAUA
(.(.......................)..).........................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 ((A)AR)A < 0.001 11.8
URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
.........1.........2.........3.........4.........5.........6.......
1234567890123456789012345678901234567890123456789012345678901234567
2 N(NA)G < 0.001 10.3
URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
.........1.........2.........3.........4.........5.........6.......
1234567890123456789012345678901234567890123456789012345678901234567
3 (R()A) < 0.001 2.6
URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
.........1.........2.........3.........4.........5.........6.......
1234567890123456789012345678901234567890123456789012345678901234567
4 R(NNA)N < 0.001 1.5
URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
.........1.........2.........3.........4.........5.........6.......
1234567890123456789012345678901234567890123456789012345678901234567
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 ((A)AR)A < 0.001 11.8
URS0000D6A0A0_504472/1-67
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
AAAUAGUGGAGACCAGCAACCACCUUAAAACGGGGCGAAGCCGAAAAGCCAAACGAGUAGGAAAAAC
.........1.........2.........3.........4.........5.........6.......
1234567890123456789012345678901234567890123456789012345678901234567
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).