D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

microRNA mir-33 (Rfam: RF00667)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

(Y()R)
(.GN.().NC.)
G(UY(G))
A(U(U))
G(U(A))
(.N.)

100.0
100.0
97.9
100.0
87.5
100.0

G(UY(G))

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 97.6 %
(± 0.504 %)

Decision tree:

5-fold cross-validation: 91.2 %
(± 5.11 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 95.9 %
(± 2.37 %)

of AANN01189516.1/304-372

AANN01189516.1/304-372

CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG
(((.((((((.((.((..((((((((...(((...)).)....))))))))..)).)).)))))).)))
.........1.........2.........3.........4.........5.........6.........
123456789012345678901234567890123456789012345678901234567890123456789

abstract shape: `()`

					Number of sequences
	Structure	ORBs			(out of 48)	(%)
1		(Y()R)			47	97.9
>AAPU01011618.1/111826-111755 CGGAGGUGCAUUGUAGUCGCAUUGUCUGUAUCCUUUAUUCUCUGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(.......................................................).)...... >AAFR03065433.1/17202-17269 CUGGGGUGCAUUGUAGUUGCAUUGCACGUCGUGUCCGGGCCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(..............................................................).) >AACT01006707.1/8663-8725 CCUGGGUGCAUUGUAGUUGCAUUGCACUGUCAUAAUGUGCAAUGUUACAUCAGUGCAAUAUGG (.(.........................................................).) >AAJJ01000068.1/107964-107901 CUUAGGUGCAUUGUAGUUGCAUUGCAUGUUAUUCAAAGUGCAGUGUCUCUCCAGUGCAACUUAG (.(..........................................................).) >AAGE02018815.1/108790-108863 CCCGGGUGCAUUGUAGUUGCAUUGCACUUUUGCGUUCGAUAACACGGUGCAAUACUUCUGCAAUGCAAGCCAGG .....(.(.........................................................).)...... >ABBA01055655.1/48509-48577 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(...........................................................).).. >AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG ..(.(...........................................................).).. >AANI01017473.1/521223-521153 CGGAGGUGCAUUGUAGUCGCAUUGUCUGUCUCAAAUUUGCCCGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(......................................................).)...... >BAAF04067532.1/6545-6478 CUGCAGUGCAUUGUAGUUGCAUUGCAUGUAUGUUUCUCAAAGUGCAAUGUACCUGCAGUGCAACACAG ..(.(..........................................................).).. >AASR01043351.1/997-930 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUUCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCU .....(.(....................................................).)..... >AADB02018141.1/18034-18100 CCGCGGUGCAUUGCUGUUGCAUUGCACGUGUGUGAGGCGGGUGCAGUGCCUCGGCAGUGCAGCCCGG ..(.(...........................................................).) >AAIY01417522.1/685-752 CGGGGGUGCAUUGUAGUUGCAUUGCACGUUCUGGCAGUGCCGUGCAAUGUUUCCACAGUGCAUCCCAG .....(.(....................................................).)..... >AABS01001128.1/11040-10976 CCCUUGUGCAUUGUAGUUGCAUUGCACUGUUGCAUUGUGGGUAAUGUGACAACAAUACAACCGGG (.(...........................................................).) >AAGV020569574.1/1591-1654 CCGCGGUGCAUUGCUGUUGCGUUGCACGUGUGUGCGGGUGCAGUGCCUCUGCAGUGCAGCCCGG (.(..........................................................).) >AAPY01023874.1/2160-2093 CUGCAGUGCAUUGUAGUUGCAUUGCAUGUCCUGACAGUACCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(..........................................................).).. >AALT01070464.1/411-345 CCGCAGUGCAUUGCUGUUGUAUUGCAUGUCUGUGAAGCGGGUGCAGUUCCUCGGCAAUGCAGCCCGG ..(.(...........................................................).) >AC105358.8/20002-19934 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCAAUACCUGUGCAAUGUUUCCACAGUGCAUCACGG ..(.(...........................................................).).. >AAIZ01009364.1/25544-25613 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCAUCUUGAUUUCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(.....................................................).)...... >AAWU01038467.1/41288-41214 CGUGGGUGCAUUGUAGUUGCAUUGCACGUUUUGCGUUCGAAAAGUCCAGUGCAGUACUUCUGCAAUGCAAACCAG .....(.(...........................................................).)..... >AAZX01017121.1/8029-8095 CGAGAGUGCAUUGUAGUUGCAUUGCAUGAAUAUUUGAAAGUGCAGUACUUCUGCAGUGCAACCCUUG .....(.(...................................................).)..... >AAGU03083241.1/16202-16138 CCGAGGUGCAUUGCUGUUGCAUUGCACGUGUGUGGCGGGUGCAGUGCCUCAGCAGUGCAGCCCGG (.(...........................................................).) >AAYZ01315512.1/404-338 CCGUGCUGCAUUGCUGGUGCAUUGCACGUGUGCGCAGCAGGUGCAGUGCCUCGGCAGUGCAGCCCGG (.(.............................................................).) >AAPT01020652.1/14236-14166 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUCCAAAAAUUGCAUGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(.......................................................).)..... >AY866035.1/442-510 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(...........................................................).).. >ABDC01612653.1/996-930 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUCAGUACCCAUGCAGUGUUUCCACAGUGCAUCCCAG ..(.(...........................................................).) >AAGJ04043287.1/21649-21718 CCAUGGUGCAUUGUCGUUGCAUUGCAUGUGUCUCUAUACCCCUAUGUAGUGCAAGAACAGUGCAAUAUGG ..(.(............................................................).).. >CAAB02000346.1/18927-18857 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCUGGCUGUACACACAGUGCAAUGAAUCUGCUCUGCAGUACAG ..(.(.............................................................).).. >CAAE01014738.1/1624047-1623979 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCCGGCUGAACACAGUGCAAUGGAUCUGCUCUGCAGUACAG ..(.(...........................................................).).. >AY866036.1/445-513 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUUACAG ..(.(...........................................................).).. >AANH01004216.1/19959-19891 CUGUGGUGCAUUGUAGUUGCAUUGCAUGGUCCUUAAAGCCGAGUGCAAUGUGUCUGCAGUGCAGUACAG ..(.(...........................................................).).. >BAAE01000948.1/5094-5161 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAAGCUGAGUGCGAUGCGUCUGCAGUGCAAUACAG ..(.(..........................................................).).. >CAAB02006724.1/156095-156163 CUGGGGUGCAUUGUAGUUGCAUUGCAUGUGUGUCACAGAGGAGUGCAAUGUACCUGCACUGCAACACAG (.(...............................................................).) >BAAB01084098.1/1985-1918 CGAGAGUGCAUUGUAGUUGCAUUGCACCGGUUCCAUUAACGUGCAAUAUGACUACAAGGCAAAUCCCG .....(.(....................................................).)..... >AAQR03015900.1/2680-2612 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCAUGCAGUGUUUCCACAGUGCAUCAUGG ..(.(...........................................................).).. >ADDD01111004.1/5860-5928 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGCUGGCAGUAACUGUGCAAUGUUCCUGCAGUGCAGUACAG ..(.(...........................................................).).. >AE014296.4/19791081-19791149 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUCCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCUG .....(.(....................................................).)...... >AAWZ02029214.1/2322-2388 CGGGGGUGCAUUGUAGUUGCAUUGCAUGUGUGGCCAAGCUGUGCAAUGCCCCUCCAGUGCAGCCCUG .....(.(...................................................).)..... >DQ483057.1/1273-1337 CCGCGGUGCAUUGCUGUUGCAUUGCAUGUGUGAGGCAGGUGCAGUGCCUCGGCAGUGCAGCCCGG (.(...........................................................).) >AAPN01422427.1/10575-10641 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGUCUGACCAGGGUGCAAUGCCCCUGCAGUGCAAUACAG (.(.............................................................).) >AANH01011106.1/1499-1563 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUGUCUGACGCUGCAAUGGAUCUCCUCUGCAACACAG (.(...........................................................).) >AAEX03007288.1/12026-11958 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACCCGUGCAAUGUUUCCACAGUGCAUCAUGG ..(.(...........................................................).).. >AAWZ02017587.1/61612-61680 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUAUUUGUGCAAUGUUUCCGCAGUGCAAUACAG ..(.(...........................................................).).. >CAAB02002948.1/84861-84794 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAACCUGAGUGCAAUGUAUCUGCAGUGCAGCACAG ..(.(..........................................................).).. >AAPN01437665.1/3526-3458 CUGUCGUGCAUUGUAGUUGCAUUGCACGUUCCGGCAGUACUGGUGCAAUGUUCCCACAGUGCAUUACAG ..(.(...........................................................).).. >AAAB01008846.1/10052751-10052823 UUCGGGUGCAUUGUAGUUGCAUUGCACUUACCGUGUUGGCAACAGGUGCAGUACUUCUGCAAUGCAACCCGAA .....(.(.........................................................).)..... >AAQQ01022475.1/405-337 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACUCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(...............................................................).) >AAPP01019353.1/60482-60414 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCCACUUGCUCCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(....................................................).)......
2		(Y()R) (.GN.().NC.)			43	89.6
>AASR01043351.1/997-930 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUUCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCU .....(.(..................(..(........)..)..................).)..... >AANI01017473.1/521223-521153 CGGAGGUGCAUUGUAGUCGCAUUGUCUGUCUCAAAUUUGCCCGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(..................(...(........)..)...................).)...... >AAWZ02029214.1/2322-2388 CGGGGGUGCAUUGUAGUUGCAUUGCAUGUGUGGCCAAGCUGUGCAAUGCCCCUCCAGUGCAGCCCUG .....(.(..................(..(......)..)...................).)..... >CAAB02006724.1/156095-156163 CUGGGGUGCAUUGUAGUUGCAUUGCAUGUGUGUCACAGAGGAGUGCAAUGUACCUGCACUGCAACACAG (.(...................(..(.................)..)...................).) >AAIY01417522.1/685-752 CGGGGGUGCAUUGUAGUUGCAUUGCACGUUCUGGCAGUGCCGUGCAAUGUUUCCACAGUGCAUCCCAG .....(.(..................(..(........)..)..................).)..... >CAAE01014738.1/1624047-1623979 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCCGGCUGAACACAGUGCAAUGGAUCUGCUCUGCAGUACAG ..(.(....................(.....(......)....)....................).).. >AAPU01011618.1/111826-111755 CGGAGGUGCAUUGUAGUCGCAUUGUCUGUAUCCUUUAUUCUCUGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(..................(..(........)....)...................).)...... >AAJJ01000068.1/107964-107901 CUUAGGUGCAUUGUAGUUGCAUUGCAUGUUAUUCAAAGUGCAGUGUCUCUCCAGUGCAACUUAG (.(...................(..(............)..)...................).) >DQ483057.1/1273-1337 CCGCGGUGCAUUGCUGUUGCAUUGCAUGUGUGAGGCAGGUGCAGUGCCUCGGCAGUGCAGCCCGG (.(...................(..(.............)..)...................).) >AC105358.8/20002-19934 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCAAUACCUGUGCAAUGUUUCCACAGUGCAUCACGG ..(.(...................(....(........).....)...................).).. >AAGE02018815.1/108790-108863 CCCGGGUGCAUUGUAGUUGCAUUGCACUUUUGCGUUCGAUAACACGGUGCAAUACUUCUGCAAUGCAAGCCAGG .....(.(...................(.....(........)..)...................).)...... >ABBA01055655.1/48509-48577 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....................(...(........)....)....................).).. >AAWU01038467.1/41288-41214 CGUGGGUGCAUUGUAGUUGCAUUGCACGUUUUGCGUUCGAAAAGUCCAGUGCAGUACUUCUGCAAUGCAAACCAG .....(.(..................(...(..........)......)..................).)..... >AAEX03007288.1/12026-11958 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACCCGUGCAAUGUUUCCACAGUGCAUCAUGG ..(.(....................(...(........)....)....................).).. >AAGJ04043287.1/21649-21718 CCAUGGUGCAUUGUCGUUGCAUUGCAUGUGUCUCUAUACCCCUAUGUAGUGCAAGAACAGUGCAAUAUGG ..(.(....................(...(........).....)....................).).. >AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....................(...(........)....)....................).).. >AAWZ02017587.1/61612-61680 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUAUUUGUGCAAUGUUUCCGCAGUGCAAUACAG ..(.(.................(..(...............)....).................).).. >AE014296.4/19791081-19791149 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUCCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCUG .....(.(..................(..(........)..)..................).)...... >AAFR03065433.1/17202-17269 CUGGGGUGCAUUGUAGUUGCAUUGCACGUCGUGUCCGGGCCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(......................(...(........)...)......................).) >AAGV020569574.1/1591-1654 CCGCGGUGCAUUGCUGUUGCGUUGCACGUGUGUGCGGGUGCAGUGCCUCUGCAGUGCAGCCCGG .........(.(..........(..(............)..)..........).)......... >AAQQ01022475.1/405-337 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACUCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(......................(...(........)....)......................).) >AAQR03015900.1/2680-2612 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCAUGCAGUGUUUCCACAGUGCAUCAUGG ..(.(....................(...(........)....)....................).).. >BAAF04067532.1/6545-6478 CUGCAGUGCAUUGUAGUUGCAUUGCAUGUAUGUUUCUCAAAGUGCAAUGUACCUGCAGUGCAACACAG ..(.(.................(..(................)..).................).).. >AAPN01437665.1/3526-3458 CUGUCGUGCAUUGUAGUUGCAUUGCACGUUCCGGCAGUACUGGUGCAAUGUUCCCACAGUGCAUUACAG ..(.(....................(....(......).....)....................).).. >AAPP01019353.1/60482-60414 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCCACUUGCUCCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(..................(..(........)..)..................).)...... >ADDD01111004.1/5860-5928 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGCUGGCAGUAACUGUGCAAUGUUCCUGCAGUGCAGUACAG ..(.(....................(...(........)....)....................).).. >AAGU03083241.1/16202-16138 CCGAGGUGCAUUGCUGUUGCAUUGCACGUGUGUGGCGGGUGCAGUGCCUCAGCAGUGCAGCCCGG .........(.(..........(..(.............)..)..........).)......... >BAAE01000948.1/5094-5161 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAAGCUGAGUGCGAUGCGUCUGCAGUGCAAUACAG ..(.(....................(...(.....)......)....................).).. >AAAB01008846.1/10052751-10052823 UUCGGGUGCAUUGUAGUUGCAUUGCACUUACCGUGUUGGCAACAGGUGCAGUACUUCUGCAAUGCAACCCGAA .....(.(....................(.....(.....)..).....................).)..... >AY866036.1/445-513 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUUACAG ..(.(....................(...(........)....)....................).).. >AACT01006707.1/8663-8725 CCUGGGUGCAUUGUAGUUGCAUUGCACUGUCAUAAUGUGCAAUGUUACAUCAGUGCAAUAUGG (.(...................(..(...........)..)...................).) >AY866035.1/442-510 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....................(...(........)....)....................).).. >AAPY01023874.1/2160-2093 CUGCAGUGCAUUGUAGUUGCAUUGCAUGUCCUGACAGUACCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(.....................(..(........)..).....................).).. >AALT01070464.1/411-345 CCGCAGUGCAUUGCUGUUGUAUUGCAUGUCUGUGAAGCGGGUGCAGUUCCUCGGCAAUGCAGCCCGG .............(.(..........(...(....)..)............).)............. >AANH01011106.1/1499-1563 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUGUCUGACGCUGCAAUGGAUCUCCUCUGCAACACAG (.(...................(...(..........)....)...................).) >ABDC01612653.1/996-930 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUCAGUACCCAUGCAGUGUUUCCACAGUGCAUCCCAG (.(......................(...(.......)...)......................).) >CAAB02000346.1/18927-18857 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCUGGCUGUACACACAGUGCAAUGAAUCUGCUCUGCAGUACAG ..(.(....................(...(..........)....)....................).).. >CAAB02002948.1/84861-84794 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAACCUGAGUGCAAUGUAUCUGCAGUGCAGCACAG ..(.(....................(...(.....)......)....................).).. >AAPN01422427.1/10575-10641 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGUCUGACCAGGGUGCAAUGCCCCUGCAGUGCAAUACAG (.(...................(......(..........)...)...................).) >AAYZ01315512.1/404-338 CCGUGCUGCAUUGCUGGUGCAUUGCACGUGUGCGCAGCAGGUGCAGUGCCUCGGCAGUGCAGCCCGG .............(.(............(..(...)..)............).)............. >AADB02018141.1/18034-18100 CCGCGGUGCAUUGCUGUUGCAUUGCACGUGUGUGAGGCGGGUGCAGUGCCUCGGCAGUGCAGCCCGG .............(.(............(..(...)..)............).)............. >AANH01004216.1/19959-19891 CUGUGGUGCAUUGUAGUUGCAUUGCAUGGUCCUUAAAGCCGAGUGCAAUGUGUCUGCAGUGCAGUACAG ..(.(....................(....(......).....)....................).).. >AAIZ01009364.1/25544-25613 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCAUCUUGAUUUCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(..................(...(........)..)..................).)......
3		(Y()R) (.GN.().NC.) G(UY(G))			34	70.8
>AAWU01038467.1/41288-41214 CGUGGGUGCAUUGUAGUUGCAUUGCACGUUUUGCGUUCGAAAAGUCCAGUGCAGUACUUCUGCAAUGCAAACCAG .....(.(.......(..(.......(...(..........)......).......)..).......).)..... >AAGE02018815.1/108790-108863 CCCGGGUGCAUUGUAGUUGCAUUGCACUUUUGCGUUCGAUAACACGGUGCAAUACUUCUGCAAUGCAAGCCAGG .....(.(.......(..(........(.....(........)..)........)..).......).)...... >AC105358.8/20002-19934 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCAAUACCUGUGCAAUGUUUCCACAGUGCAUCACGG ..(.(..........(..(.....(....(........).....)......).)..........).).. >CAAB02000346.1/18927-18857 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCUGGCUGUACACACAGUGCAAUGAAUCUGCUCUGCAGUACAG ..(.(..........(..(......(...(..........)....)......)..)..........).).. >AACT01006707.1/8663-8725 CCUGGGUGCAUUGUAGUUGCAUUGCACUGUCAUAAUGUGCAAUGUUACAUCAGUGCAAUAUGG (.(............(..(...(..(...........)..)...)...)...........).) >AAPU01011618.1/111826-111755 CGGAGGUGCAUUGUAGUCGCAUUGUCUGUAUCCUUUAUUCUCUGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(.......(..(.......(..(........)....)........)..).......).)...... >CAAB02002948.1/84861-84794 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAACCUGAGUGCAAUGUAUCUGCAGUGCAGCACAG ..(.(..........(..(......(...(.....)......)......)..)..........).).. >ABBA01055655.1/48509-48577 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(..........(..(......(...(........)....)......)..)..........).).. >AANI01017473.1/521223-521153 CGGAGGUGCAUUGUAGUCGCAUUGUCUGUCUCAAAUUUGCCCGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(.......(..(.......(...(........)..)........)..).......).)...... >AAEX03007288.1/12026-11958 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACCCGUGCAAUGUUUCCACAGUGCAUCAUGG ..(.(..........(..(......(...(........)....)......)..)..........).).. >DQ483057.1/1273-1337 CCGCGGUGCAUUGCUGUUGCAUUGCAUGUGUGAGGCAGGUGCAGUGCCUCGGCAGUGCAGCCCGG (.(............(..(...(..(.............)..).....))............).) >AANH01004216.1/19959-19891 CUGUGGUGCAUUGUAGUUGCAUUGCAUGGUCCUUAAAGCCGAGUGCAAUGUGUCUGCAGUGCAGUACAG ..(.(..........(..(......(....(......).....)......)..)..........).).. >AE014296.4/19791081-19791149 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUCCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCUG .....(.(.......(..(.......(..(........)..).......)..).......).)...... >AAIZ01009364.1/25544-25613 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCAUCUUGAUUUCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(.......(..(.......(...(........)..).......)..).......).)...... >AAPN01437665.1/3526-3458 CUGUCGUGCAUUGUAGUUGCAUUGCACGUUCCGGCAGUACUGGUGCAAUGUUCCCACAGUGCAUUACAG ..(.(..........(..(......(....(......).....)......)..)..........).).. >AY866036.1/445-513 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUUACAG ..(.(..........(..(......(...(........)....)......)..)..........).).. >AASR01043351.1/997-930 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUUCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCU .....(.(.......(..(.......(..(........)..).......)..).......).)..... >AANH01011106.1/1499-1563 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUGUCUGACGCUGCAAUGGAUCUCCUCUGCAACACAG (.(............(..(......(....(.....)..)......)..)............).) >CAAE01014738.1/1624047-1623979 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCCGGCUGAACACAGUGCAAUGGAUCUGCUCUGCAGUACAG ..(.(..........(..(......(.....(......)....)......)..)..........).).. >AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG ..(.(..........(..(......(...(........)....)......)..)..........).).. >AAGJ04043287.1/21649-21718 CCAUGGUGCAUUGUCGUUGCAUUGCAUGUGUCUCUAUACCCCUAUGUAGUGCAAGAACAGUGCAAUAUGG ..(.(..........(..(......(...(........).....)......).)...........).).. >AAJJ01000068.1/107964-107901 CUUAGGUGCAUUGUAGUUGCAUUGCAUGUUAUUCAAAGUGCAGUGUCUCUCCAGUGCAACUUAG (.(............(..(...(..(............)..)....)...)..........).) >AAPP01019353.1/60482-60414 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCCACUUGCUCCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(.......(..(.......(..(........)..).......)..).......).)...... >AY866035.1/442-510 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(..........(..(......(...(........)....)......)..)..........).).. >AAPN01422427.1/10575-10641 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGUCUGACCAGGGUGCAAUGCCCCUGCAGUGCAAUACAG (.(............(..(...(......(..........)...)...)...)...........).) >ABDC01612653.1/996-930 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUCAGUACCCAUGCAGUGUUUCCACAGUGCAUCCCAG (.(............(..(......(...(.......)...)......)....)..........).) >AAWZ02029214.1/2322-2388 CGGGGGUGCAUUGUAGUUGCAUUGCAUGUGUGGCCAAGCUGUGCAAUGCCCCUCCAGUGCAGCCCUG .....(.(.......(..(.......(..(......)..)........)).........).)..... >AAQR03015900.1/2680-2612 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCAUGCAGUGUUUCCACAGUGCAUCAUGG ..(.(..........(..(......(...(........)....)......)..)..........).).. >ADDD01111004.1/5860-5928 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGCUGGCAGUAACUGUGCAAUGUUCCUGCAGUGCAGUACAG ..(.(..........(..(......(...(........)....)......)..)..........).).. >AAFR03065433.1/17202-17269 CUGGGGUGCAUUGUAGUUGCAUUGCACGUCGUGUCCGGGCCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(............(..(.......(..(........)..)......)....)...........).) >AAQQ01022475.1/405-337 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACUCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(............(..(......(...(........)....)......)...)...........).) >BAAE01000948.1/5094-5161 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAAGCUGAGUGCGAUGCGUCUGCAGUGCAAUACAG ..(.(..........(..(......(...(.....)......)......)..)..........).).. >AAPY01023874.1/2160-2093 CUGCAGUGCAUUGUAGUUGCAUUGCAUGUCCUGACAGUACCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(..........(..(.......(..(........)..).......)..)..........).).. >AAIY01417522.1/685-752 CGGGGGUGCAUUGUAGUUGCAUUGCACGUUCUGGCAGUGCCGUGCAAUGUUUCCACAGUGCAUCCCAG .....(.(.......(..(.......(..(........)..).......)).........).).....
4		(Y()R) (.GN.().NC.) G(UY(G)) A(U(U))			27	56.2
>AC105358.8/20002-19934 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCAAUACCUGUGCAAUGUUUCCACAGUGCAUCACGG ..(.(....(.(...(..(.....(....(........).....)......).)...).)....).).. >AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. >CAAE01014738.1/1624047-1623979 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCCGGCUGAACACAGUGCAAUGGAUCUGCUCUGCAGUACAG ..(.(....(.(...(..(......(.....(......)....)......)..)...).)....).).. >ADDD01111004.1/5860-5928 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGCUGGCAGUAACUGUGCAAUGUUCCUGCAGUGCAGUACAG ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. >ABBA01055655.1/48509-48577 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. >AAEX03007288.1/12026-11958 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACCCGUGCAAUGUUUCCACAGUGCAUCAUGG ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. >AAPN01437665.1/3526-3458 CUGUCGUGCAUUGUAGUUGCAUUGCACGUUCCGGCAGUACUGGUGCAAUGUUCCCACAGUGCAUUACAG ..(.(....(.(...(..(......(....(......).....)......)..)...).)....).).. >AY866036.1/445-513 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUUACAG ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. >AAPY01023874.1/2160-2093 CUGCAGUGCAUUGUAGUUGCAUUGCAUGUCCUGACAGUACCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.(...(..(.......(..(........)..).......)..)...).)....).).. >AAQR03015900.1/2680-2612 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCAUGCAGUGUUUCCACAGUGCAUCAUGG (.(......(.(...(..(.......(..(........)...).......)..)...).)......).) >CAAB02002948.1/84861-84794 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAACCUGAGUGCAAUGUAUCUGCAGUGCAGCACAG ..(.(....(.(...(..(......(...(.....)......)......)..)...).)....).).. >CAAB02000346.1/18927-18857 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCUGGCUGUACACACAGUGCAAUGAAUCUGCUCUGCAGUACAG ..(.(....(.(...(..(......(...(..........)....)......)..)...).)....).).. >AANI01017473.1/521223-521153 CGGAGGUGCAUUGUAGUCGCAUUGUCUGUCUCAAAUUUGCCCGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(.(.(...(..(.......(...(........)..)........)..)...).).).)...... >AAGE02018815.1/108790-108863 CCCGGGUGCAUUGUAGUUGCAUUGCACUUUUGCGUUCGAUAACACGGUGCAAUACUUCUGCAAUGCAAGCCAGG .....(.(.(.(...(..(........(.....(........)..)........)..)...).).).)...... >AAWZ02029214.1/2322-2388 CGGGGGUGCAUUGUAGUUGCAUUGCAUGUGUGGCCAAGCUGUGCAAUGCCCCUCCAGUGCAGCCCUG .....(.(.(.(...(..(.......(..(......)..)........))....)..).).)..... >AAIZ01009364.1/25544-25613 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCAUCUUGAUUUCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(.(.(...(..(.......(...(........)..).......)..)...))..).)...... >AY866035.1/442-510 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. >AAPU01011618.1/111826-111755 CGGAGGUGCAUUGUAGUCGCAUUGUCUGUAUCCUUUAUUCUCUGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(.(.(...(..(.......(..(........)....)........)..)...))..).)...... >AASR01043351.1/997-930 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUUCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCU .....(.(.(.(...(..(.......(..(........)..).......)..)...))..).)..... >BAAE01000948.1/5094-5161 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAAGCUGAGUGCGAUGCGUCUGCAGUGCAAUACAG ..(.(....(.(...(..(......(...(.....)......)......)..)...).)....).).. >AAGJ04043287.1/21649-21718 CCAUGGUGCAUUGUCGUUGCAUUGCAUGUGUCUCUAUACCCCUAUGUAGUGCAAGAACAGUGCAAUAUGG ..(.(....(.(...(..(......(...(........).....)......).)...)..)....).).. >AAFR03065433.1/17202-17269 CUGGGGUGCAUUGUAGUUGCAUUGCACGUCGUGUCCGGGCCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(......(.(...(..(.......(..(........)..)......)....)...))......).) >AANH01004216.1/19959-19891 CUGUGGUGCAUUGUAGUUGCAUUGCAUGGUCCUUAAAGCCGAGUGCAAUGUGUCUGCAGUGCAGUACAG ..(.(....(.(...(..(......(....(......).....)......)..)...).)....).).. >AAPP01019353.1/60482-60414 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCCACUUGCUCCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(.(.(...(..(.......(..(........)..).......)..)...))..).)...... >AAQQ01022475.1/405-337 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACUCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(......(.(...(..(......(...(........)....)......)...)..).)......).) >AANH01011106.1/1499-1563 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUGUCUGACGCUGCAAUGGAUCUCCUCUGCAACACAG (.(......(.(...(..(......(....(.....)..)......)..)...).)......).) >AE014296.4/19791081-19791149 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUCCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCUG .....(.(.(.(...(..(.......(..(........)..).......)..)...))..).)......
5		(Y()R) (.GN.().NC.) G(UY(G)) A(U(U)) G(U(A))			19	39.6
>AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. >CAAE01014738.1/1624047-1623979 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCCGGCUGAACACAGUGCAAUGGAUCUGCUCUGCAGUACAG ..(.(....(.((.((..(......(.....(......)....)......)..)).)).)....).).. >AAEX03007288.1/12026-11958 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACCCGUGCAAUGUUUCCACAGUGCAUCAUGG ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. >CAAB02002948.1/84861-84794 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAACCUGAGUGCAAUGUAUCUGCAGUGCAGCACAG ..(.(....(.((.((..(......(...(.....)......)......)..)).)).)....).).. >AAPY01023874.1/2160-2093 CUGCAGUGCAUUGUAGUUGCAUUGCAUGUCCUGACAGUACCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.((.((..(.......(..(........)..).......)..)).)).)....).).. >AANH01004216.1/19959-19891 CUGUGGUGCAUUGUAGUUGCAUUGCAUGGUCCUUAAAGCCGAGUGCAAUGUGUCUGCAGUGCAGUACAG ..(.(....(.((.((..(......(....(......).....)......)..)).)).)....).).. >ABBA01055655.1/48509-48577 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. >AASR01043351.1/997-930 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUUCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCU .....(.(.(.((.((..(.......(..(........)..).......)..)).)))..).)..... >AY866035.1/442-510 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. >AE014296.4/19791081-19791149 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUCCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCUG .....(.(.(.((.((..(.......(..(........)..).......)..)).)))..).)...... >AANH01011106.1/1499-1563 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUGUCUGACGCUGCAAUGGAUCUCCUCUGCAACACAG (.(......(.((.((..(......(....(.....)..)......)..)).)).)......).) >AAQQ01022475.1/405-337 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACUCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(......(.((.((..(......(...(........)....)......)...)))).)......).) >AY866036.1/445-513 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUUACAG ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. >AAQR03015900.1/2680-2612 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCAUGCAGUGUUUCCACAGUGCAUCAUGG (.(......(.((.((..(.......(..(........)...).......)..)).)).)......).) >AAPN01437665.1/3526-3458 CUGUCGUGCAUUGUAGUUGCAUUGCACGUUCCGGCAGUACUGGUGCAAUGUUCCCACAGUGCAUUACAG ..(.(....(.((.((..(......(....(......).....)......)..)).)).)....).).. >AAPP01019353.1/60482-60414 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCCACUUGCUCCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(.(.((.((..(.......(..(........)..).......)..)).)))..).)...... >ADDD01111004.1/5860-5928 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGCUGGCAGUAACUGUGCAAUGUUCCUGCAGUGCAGUACAG ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. >BAAE01000948.1/5094-5161 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAAGCUGAGUGCGAUGCGUCUGCAGUGCAAUACAG ..(.(....(.((.((..(......(...(.....)......)......)..)).)).)....).).. >AAIZ01009364.1/25544-25613 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCAUCUUGAUUUCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(.(.((.((..(.......(...(........)..).......)..)).)))..).)......
6		(Y()R) (.GN.().NC.) G(UY(G)) A(U(U)) G(U(A)) (.N.)			16	33.3
>AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >AY866036.1/445-513 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUUACAG ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >ABBA01055655.1/48509-48577 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >AAQQ01022475.1/405-337 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACUCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(......(.((.((..(......(...(.(...)..)....)......)...)))).)......).) >AAEX03007288.1/12026-11958 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACCCGUGCAAUGUUUCCACAGUGCAUCAUGG ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >AAPN01437665.1/3526-3458 CUGUCGUGCAUUGUAGUUGCAUUGCACGUUCCGGCAGUACUGGUGCAAUGUUCCCACAGUGCAUUACAG ..(.(....(.((.((..(......(....(.(..).).....)......)..)).)).)....).).. >AAPP01019353.1/60482-60414 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCCACUUGCUCCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(.(.((.((..(.......(..(.(...)..)..).......)..)).)))..).)...... >CAAE01014738.1/1624047-1623979 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCCGGCUGAACACAGUGCAAUGGAUCUGCUCUGCAGUACAG ..(.(....(.((.((..(......(.....(.(..).)....)......)..)).)).)....).).. >AANH01004216.1/19959-19891 CUGUGGUGCAUUGUAGUUGCAUUGCAUGGUCCUUAAAGCCGAGUGCAAUGUGUCUGCAGUGCAGUACAG ..(.(....(.((.((..(......(....(.(..).).....)......)..)).)).)....).).. >ADDD01111004.1/5860-5928 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGCUGGCAGUAACUGUGCAAUGUUCCUGCAGUGCAGUACAG ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >AAPY01023874.1/2160-2093 CUGCAGUGCAUUGUAGUUGCAUUGCAUGUCCUGACAGUACCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.((.((..(.......(..(.(...)..)..).......)..)).)).)....).).. >AY866035.1/442-510 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >AE014296.4/19791081-19791149 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUCCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCUG .....(.(.(.((.((..(.......(..(.(...)..)..).......)..)).)))..).)...... >AAIZ01009364.1/25544-25613 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCAUCUUGAUUUCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(.(.((.((..(.......(...(.(...)..)..).......)..)).)))..).)...... >AASR01043351.1/997-930 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUUCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCU .....(.(.(.((.((..(.......(..(.(...)..)..).......)..)).)))..).)..... >AAQR03015900.1/2680-2612 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCAUGCAGUGUUUCCACAGUGCAUCAUGG (.(......(.((.((..(.......(..(.(...)..)...).......)..)).)).)......).)

>ABBA01055655.1/48509-48577 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(...........................................................).).. ..(.(....................(...(........)....)....................).).. ..(.(..........(..(......(...(........)....)......)..)..........).).. ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG ..(.(...........................................................).).. ..(.(....................(...(........)....)....................).).. ..(.(..........(..(......(...(........)....)......)..)..........).).. ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >AASR01043351.1/997-930 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUUCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCU .....(.(....................................................).)..... .....(.(..................(..(........)..)..................).)..... .....(.(.......(..(.......(..(........)..).......)..).......).)..... .....(.(.(.(...(..(.......(..(........)..).......)..)...))..).)..... .....(.(.(.((.((..(.......(..(........)..).......)..)).)))..).)..... .....(.(.(.((.((..(.......(..(.(...)..)..).......)..)).)))..).)..... >AAPY01023874.1/2160-2093 CUGCAGUGCAUUGUAGUUGCAUUGCAUGUCCUGACAGUACCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(..........................................................).).. ..(.(.....................(..(........)..).....................).).. ..(.(..........(..(.......(..(........)..).......)..)..........).).. ..(.(....(.(...(..(.......(..(........)..).......)..)...).)....).).. ..(.(....(.((.((..(.......(..(........)..).......)..)).)).)....).).. ..(.(....(.((.((..(.......(..(.(...)..)..).......)..)).)).)....).).. >AAIZ01009364.1/25544-25613 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCAUCUUGAUUUCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(.....................................................).)...... .....(.(..................(...(........)..)..................).)...... .....(.(.......(..(.......(...(........)..).......)..).......).)...... .....(.(.(.(...(..(.......(...(........)..).......)..)...))..).)...... .....(.(.(.((.((..(.......(...(........)..).......)..)).)))..).)...... .....(.(.(.((.((..(.......(...(.(...)..)..).......)..)).)))..).)...... >AY866035.1/442-510 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUCACAG ..(.(...........................................................).).. ..(.(....................(...(........)....)....................).).. ..(.(..........(..(......(...(........)....)......)..)..........).).. ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >CAAE01014738.1/1624047-1623979 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCCGGCUGAACACAGUGCAAUGGAUCUGCUCUGCAGUACAG ..(.(...........................................................).).. ..(.(....................(.....(......)....)....................).).. ..(.(..........(..(......(.....(......)....)......)..)..........).).. ..(.(....(.(...(..(......(.....(......)....)......)..)...).)....).).. ..(.(....(.((.((..(......(.....(......)....)......)..)).)).)....).).. ..(.(....(.((.((..(......(.....(.(..).)....)......)..)).)).)....).).. >AY866036.1/445-513 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACAGUGCAUUACAG ..(.(...........................................................).).. ..(.(....................(...(........)....)....................).).. ..(.(..........(..(......(...(........)....)......)..)..........).).. ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >AANH01004216.1/19959-19891 CUGUGGUGCAUUGUAGUUGCAUUGCAUGGUCCUUAAAGCCGAGUGCAAUGUGUCUGCAGUGCAGUACAG ..(.(...........................................................).).. ..(.(....................(....(......).....)....................).).. ..(.(..........(..(......(....(......).....)......)..)..........).).. ..(.(....(.(...(..(......(....(......).....)......)..)...).)....).).. ..(.(....(.((.((..(......(....(......).....)......)..)).)).)....).).. ..(.(....(.((.((..(......(....(.(..).).....)......)..)).)).)....).).. >AAQR03015900.1/2680-2612 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCAUGCAGUGUUUCCACAGUGCAUCAUGG ..(.(...........................................................).).. ..(.(....................(...(........)....)....................).).. ..(.(..........(..(......(...(........)....)......)..)..........).).. (.(......(.(...(..(.......(..(........)...).......)..)...).)......).) (.(......(.((.((..(.......(..(........)...).......)..)).)).)......).) (.(......(.((.((..(.......(..(.(...)..)...).......)..)).)).)......).) >ADDD01111004.1/5860-5928 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGCUGGCAGUAACUGUGCAAUGUUCCUGCAGUGCAGUACAG ..(.(...........................................................).).. ..(.(....................(...(........)....)....................).).. ..(.(..........(..(......(...(........)....)......)..)..........).).. ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >AE014296.4/19791081-19791149 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUCCCAAUUGCUUCAGGCAAUACAACUUCAGUGCAAGCUCUG .....(.(....................................................).)...... .....(.(..................(..(........)..)..................).)...... .....(.(.......(..(.......(..(........)..).......)..).......).)...... .....(.(.(.(...(..(.......(..(........)..).......)..)...))..).)...... .....(.(.(.((.((..(.......(..(........)..).......)..)).)))..).)...... .....(.(.(.((.((..(.......(..(.(...)..)..).......)..)).)))..).)...... >AAEX03007288.1/12026-11958 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACCCGUGCAAUGUUUCCACAGUGCAUCAUGG ..(.(...........................................................).).. ..(.(....................(...(........)....)....................).).. ..(.(..........(..(......(...(........)....)......)..)..........).).. ..(.(....(.(...(..(......(...(........)....)......)..)...).)....).).. ..(.(....(.((.((..(......(...(........)....)......)..)).)).)....).).. ..(.(....(.((.((..(......(...(.(...)..)....)......)..)).)).)....).).. >AAPN01437665.1/3526-3458 CUGUCGUGCAUUGUAGUUGCAUUGCACGUUCCGGCAGUACUGGUGCAAUGUUCCCACAGUGCAUUACAG ..(.(...........................................................).).. ..(.(....................(....(......).....)....................).).. ..(.(..........(..(......(....(......).....)......)..)..........).).. ..(.(....(.(...(..(......(....(......).....)......)..)...).)....).).. ..(.(....(.((.((..(......(....(......).....)......)..)).)).)....).).. ..(.(....(.((.((..(......(....(.(..).).....)......)..)).)).)....).).. >AAQQ01022475.1/405-337 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCGGUACUCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(...............................................................).) (.(......................(...(........)....)......................).) (.(............(..(......(...(........)....)......)...)...........).) (.(......(.(...(..(......(...(........)....)......)...)..).)......).) (.(......(.((.((..(......(...(........)....)......)...)))).)......).) (.(......(.((.((..(......(...(.(...)..)....)......)...)))).)......).) >AAPP01019353.1/60482-60414 CGCAGGUGCAUUGUAGUCGCAUUGUCUGUCCCACUUGCUCCAGGCAAUACAACUGCAGUGCAAGCUCUG .....(.(....................................................).)...... .....(.(..................(..(........)..)..................).)...... .....(.(.......(..(.......(..(........)..).......)..).......).)...... .....(.(.(.(...(..(.......(..(........)..).......)..)...))..).)...... .....(.(.(.((.((..(.......(..(........)..).......)..)).)))..).)...... .....(.(.(.((.((..(.......(..(.(...)..)..).......)..)).)))..).)...... >BAAE01000948.1/5094-5161 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAAGCUGAGUGCGAUGCGUCUGCAGUGCAAUACAG ..(.(..........................................................).).. ..(.(....................(...(.....)......)....................).).. ..(.(..........(..(......(...(.....)......)......)..)..........).).. ..(.(....(.(...(..(......(...(.....)......)......)..)...).)....).).. ..(.(....(.((.((..(......(...(.....)......)......)..)).)).)....).).. >AANH01011106.1/1499-1563 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUGUCUGACGCUGCAAUGGAUCUCCUCUGCAACACAG (.(...........................................................).) (.(...................(...(..........)....)...................).) (.(............(..(......(....(.....)..)......)..)............).) (.(......(.(...(..(......(....(.....)..)......)..)...).)......).) (.(......(.((.((..(......(....(.....)..)......)..)).)).)......).) >CAAB02002948.1/84861-84794 CUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGAACCUGAGUGCAAUGUAUCUGCAGUGCAGCACAG ..(.(..........................................................).).. ..(.(....................(...(.....)......)....................).).. ..(.(..........(..(......(...(.....)......)......)..)..........).).. ..(.(....(.(...(..(......(...(.....)......)......)..)...).)....).).. ..(.(....(.((.((..(......(...(.....)......)......)..)).)).)....).).. >AAPU01011618.1/111826-111755 CGGAGGUGCAUUGUAGUCGCAUUGUCUGUAUCCUUUAUUCUCUGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(.......................................................).)...... .....(.(..................(..(........)....)...................).)...... .....(.(.......(..(.......(..(........)....)........)..).......).)...... .....(.(.(.(...(..(.......(..(........)....)........)..)...))..).)...... >AAFR03065433.1/17202-17269 CUGGGGUGCAUUGUAGUUGCAUUGCACGUCGUGUCCGGGCCGUGCAAUGUUUCCACAGUGCAUCCCAG (.(..............................................................).) (.(......................(...(........)...)......................).) (.(............(..(.......(..(........)..)......)....)...........).) (.(......(.(...(..(.......(..(........)..)......)....)...))......).) >AAGE02018815.1/108790-108863 CCCGGGUGCAUUGUAGUUGCAUUGCACUUUUGCGUUCGAUAACACGGUGCAAUACUUCUGCAAUGCAAGCCAGG .....(.(.........................................................).)...... .....(.(...................(.....(........)..)...................).)...... .....(.(.......(..(........(.....(........)..)........)..).......).)...... .....(.(.(.(...(..(........(.....(........)..)........)..)...).).).)...... >AANI01017473.1/521223-521153 CGGAGGUGCAUUGUAGUCGCAUUGUCUGUCUCAAAUUUGCCCGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(......................................................).)...... .....(.(..................(...(........)..)...................).)...... .....(.(.......(..(.......(...(........)..)........)..).......).)...... .....(.(.(.(...(..(.......(...(........)..)........)..)...).).).)...... >AC105358.8/20002-19934 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCAAUACCUGUGCAAUGUUUCCACAGUGCAUCACGG ..(.(...........................................................).).. ..(.(...................(....(........).....)...................).).. ..(.(..........(..(.....(....(........).....)......).)..........).).. ..(.(....(.(...(..(.....(....(........).....)......).)...).)....).).. >AAGJ04043287.1/21649-21718 CCAUGGUGCAUUGUCGUUGCAUUGCAUGUGUCUCUAUACCCCUAUGUAGUGCAAGAACAGUGCAAUAUGG ..(.(............................................................).).. ..(.(....................(...(........).....)....................).).. ..(.(..........(..(......(...(........).....)......).)...........).).. ..(.(....(.(...(..(......(...(........).....)......).)...)..)....).).. >CAAB02000346.1/18927-18857 CUGUGGUGCAUUGUAGUUGCAUUGCACGUCUGGCUGUACACACAGUGCAAUGAAUCUGCUCUGCAGUACAG ..(.(.............................................................).).. ..(.(....................(...(..........)....)....................).).. ..(.(..........(..(......(...(..........)....)......)..)..........).).. ..(.(....(.(...(..(......(...(..........)....)......)..)...).)....).).. >AAWZ02029214.1/2322-2388 CGGGGGUGCAUUGUAGUUGCAUUGCAUGUGUGGCCAAGCUGUGCAAUGCCCCUCCAGUGCAGCCCUG .....(.(...................................................).)..... .....(.(..................(..(......)..)...................).)..... .....(.(.......(..(.......(..(......)..)........)).........).)..... .....(.(.(.(...(..(.......(..(......)..)........))....)..).).)..... >AACT01006707.1/8663-8725 CCUGGGUGCAUUGUAGUUGCAUUGCACUGUCAUAAUGUGCAAUGUUACAUCAGUGCAAUAUGG (.(.........................................................).) (.(...................(..(...........)..)...................).) (.(............(..(...(..(...........)..)...)...)...........).) >AAJJ01000068.1/107964-107901 CUUAGGUGCAUUGUAGUUGCAUUGCAUGUUAUUCAAAGUGCAGUGUCUCUCCAGUGCAACUUAG (.(..........................................................).) (.(...................(..(............)..)...................).) (.(............(..(...(..(............)..)....)...)..........).) >AAIY01417522.1/685-752 CGGGGGUGCAUUGUAGUUGCAUUGCACGUUCUGGCAGUGCCGUGCAAUGUUUCCACAGUGCAUCCCAG .....(.(....................................................).)..... .....(.(..................(..(........)..)..................).)..... .....(.(.......(..(.......(..(........)..).......)).........).)..... >AAWU01038467.1/41288-41214 CGUGGGUGCAUUGUAGUUGCAUUGCACGUUUUGCGUUCGAAAAGUCCAGUGCAGUACUUCUGCAAUGCAAACCAG .....(.(...........................................................).)..... .....(.(..................(...(..........)......)..................).)..... .....(.(.......(..(.......(...(..........)......).......)..).......).)..... >ABDC01612653.1/996-930 CUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUCAGUACCCAUGCAGUGUUUCCACAGUGCAUCCCAG ..(.(...........................................................).) (.(......................(...(.......)...)......................).) (.(............(..(......(...(.......)...)......)....)..........).) >DQ483057.1/1273-1337 CCGCGGUGCAUUGCUGUUGCAUUGCAUGUGUGAGGCAGGUGCAGUGCCUCGGCAGUGCAGCCCGG (.(...........................................................).) (.(...................(..(.............)..)...................).) (.(............(..(...(..(.............)..).....))............).) >AAPN01422427.1/10575-10641 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUGUCUGACCAGGGUGCAAUGCCCCUGCAGUGCAAUACAG (.(.............................................................).) (.(...................(......(..........)...)...................).) (.(............(..(...(......(..........)...)...)...)...........).) >BAAF04067532.1/6545-6478 CUGCAGUGCAUUGUAGUUGCAUUGCAUGUAUGUUUCUCAAAGUGCAAUGUACCUGCAGUGCAACACAG ..(.(..........................................................).).. ..(.(.................(..(................)..).................).).. >AADB02018141.1/18034-18100 CCGCGGUGCAUUGCUGUUGCAUUGCACGUGUGUGAGGCGGGUGCAGUGCCUCGGCAGUGCAGCCCGG ..(.(...........................................................).) .............(.(............(..(...)..)............).)............. >AAGV020569574.1/1591-1654 CCGCGGUGCAUUGCUGUUGCGUUGCACGUGUGUGCGGGUGCAGUGCCUCUGCAGUGCAGCCCGG (.(..........................................................).) .........(.(..........(..(............)..)..........).)......... >AALT01070464.1/411-345 CCGCAGUGCAUUGCUGUUGUAUUGCAUGUCUGUGAAGCGGGUGCAGUUCCUCGGCAAUGCAGCCCGG ..(.(...........................................................).) .............(.(..........(...(....)..)............).)............. >AAGU03083241.1/16202-16138 CCGAGGUGCAUUGCUGUUGCAUUGCACGUGUGUGGCGGGUGCAGUGCCUCAGCAGUGCAGCCCGG (.(...........................................................).) .........(.(..........(..(.............)..)..........).)......... >AAYZ01315512.1/404-338 CCGUGCUGCAUUGCUGGUGCAUUGCACGUGUGCGCAGCAGGUGCAGUGCCUCGGCAGUGCAGCCCGG (.(.............................................................).) .............(.(............(..(...)..)............).)............. >CAAB02006724.1/156095-156163 CUGGGGUGCAUUGUAGUUGCAUUGCAUGUGUGUCACAGAGGAGUGCAAUGUACCUGCACUGCAACACAG (.(...............................................................).) (.(...................(..(.................)..)...................).) >AAWZ02017587.1/61612-61680 CUGUAGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUAUUUGUGCAAUGUUUCCGCAGUGCAAUACAG ..(.(...........................................................).).. ..(.(.................(..(...............)....).................).).. >AAAB01008846.1/10052751-10052823 UUCGGGUGCAUUGUAGUUGCAUUGCACUUACCGUGUUGGCAACAGGUGCAGUACUUCUGCAAUGCAACCCGAA .....(.(.........................................................).)..... .....(.(....................(.....(.....)..).....................).)..... >AABS01001128.1/11040-10976 CCCUUGUGCAUUGUAGUUGCAUUGCACUGUUGCAUUGUGGGUAAUGUGACAACAAUACAACCGGG (.(...........................................................).) >AAZX01017121.1/8029-8095 CGAGAGUGCAUUGUAGUUGCAUUGCAUGAAUAUUUGAAAGUGCAGUACUUCUGCAGUGCAACCCUUG .....(.(...................................................).)..... >AAPT01020652.1/14236-14166 CGAAGGUGCAUUGUAGUCGCAUUGUCUGUCCAAAAAUUGCAUGCGGCAAUACAACUGCAGUGCAAGCUCCG .....(.(.......................................................).)..... >BAAB01084098.1/1985-1918 CGAGAGUGCAUUGUAGUUGCAUUGCACCGGUUCCAUUAACGUGCAAUAUGACUACAAGGCAAAUCCCG .....(.(....................................................).).....

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	(Y()R)			< 0.001		4.76

AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG .........1.........2.........3.........4.........5.........6......... 123456789012345678901234567890123456789012345678901234567890123456789
2	(.GN.().NC.)			< 0.001		11.3

AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG .........1.........2.........3.........4.........5.........6......... 123456789012345678901234567890123456789012345678901234567890123456789
3	G(UY(G))			< 0.001		5.56

AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG .........1.........2.........3.........4.........5.........6......... 123456789012345678901234567890123456789012345678901234567890123456789
4	A(U(U))			< 0.001		2.7

AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG .........1.........2.........3.........4.........5.........6......... 123456789012345678901234567890123456789012345678901234567890123456789
5	G(U(A))			< 0.001		2.31

AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG .........1.........2.........3.........4.........5.........6......... 123456789012345678901234567890123456789012345678901234567890123456789
6	(.N.)			< 0.001		1.37

AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG .........1.........2.........3.........4.........5.........6......... 123456789012345678901234567890123456789012345678901234567890123456789
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	(Y()R)			< 0.001		4.76

AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG .........1.........2.........3.........4.........5.........6......... 123456789012345678901234567890123456789012345678901234567890123456789
2	G(C(A))			< 0.001		4.52

AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG .........1.........2.........3.........4.........5.........6......... 123456789012345678901234567890123456789012345678901234567890123456789
3	C(A(U))			< 0.001		1.33

AANN01189516.1/304-372 CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG CUGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUAGCAGUACCCGUGCAAUGUUUCCACAGUGCAUCACAG .........1.........2.........3.........4.........5.........6......... 123456789012345678901234567890123456789012345678901234567890123456789
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).