D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Small Cajal body specific RNA 4   (Rfam: RF00423)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
U(RAR)G
R(AR(A))
((C)N)A
A(C(U))
((U)GA)U
((C)N)N
91.7
87.5
100.0
87.5
91.7
100.0
U(RAR)G
R(AR(A))
((C)N)A
((C)N)A
A(C(U))
((U)GA)U

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.7 %
(± 0.101 %)
Decision tree:

5-fold cross-validation: 79.6 %
(± 5.36 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 86.4 %
(± 14.3 %)
of AAFR03052106.1/48119-48247
AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
(((((((((.(..((((((((((((((.(...)).))))))))))..)))).)))))).))).(..((((((((((((((((((((((((((((...)))))))))...))))))))))))))))))))
...................................................................................................1.............................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789

abstract shape: ()()

Number of sequences
Structure ORBs (out of 24) (%)
1 U(RAR)G
 22 91.7
>AANN01670216.1/501-630
GGUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAGAAAAGGGUUUGAGAGAGCAGCUCUUACCGGGAGAAAGUCACAGGGCUGACUGUAGUACCCAACAUUC
............................(...).................................................................................................
>AANG01021475.1/9614-9486
GCUGGAGGACUAAGAAGGCUGAGUCUGGUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAGAACAGGGUGGGCGAGAGCAGCCCUCACUGGAGGACACCACGGGGCUGACUGCACGACCCGACACGC
............................(...)................................................................................................
>AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
............................(...)................................................................................................
>AJ609483.1/1-129
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
............................(...)................................................................................................
>AAWR02038660.1/76508-76636
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAAAAAGGGGUUGGAGAGAGCAGCCCUUAUUGGAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
............................(...)................................................................................................
>AY270787.1/135-13
ACUGGAGGACUAAGGAGGCUGGGUCUGAUGAGGCAAGAUUUUGCUGAUACAUUGCUCCUAGAAAAAAGGGUUGGCAAGAGCAGCCCUGGAGACUCACACGGCUGACUGUUCUACCCAACACUC
............................(...)..........................................................................................
>AALT01070738.1/638-766
UCUGGAGGAUCAAGAAGGCGGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAGAAAGGGGUCAGAGAGAGCAGCCCUGCCUGGAGCACUGCACAGGGCUGACUGCACCACCCGACAUUC
............................(...)................................................................................................
>FJ915949.1/1-128
CUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
...........................(...)................................................................................................
>AABR05089070.1/21288-21415
ACUGGAGGACCAAGAAGGCGGAGUCUGAUGAAGCAAGACUUUGCUGAUACACUCCUCCUAGACAAAGGGGUGGAGAGAGCAGCCCUUAUUGGAGAAAACCACAGGGCUCACUGUACUACCCAACAUUU
............................(...)...............................................................................................
>AAFC03006841.1/13718-13584
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUCCGUGUGUUAUAGAAUAUCACAGGGUUGACUGUAUGACCCGACAUUC
............................(...)......................................................................................................
>AAPE02017312.1/35937-35810
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAAAAUAAAGGGUGGAGAGAGCAGCCCUUAUUGGAGAAUAUCACAGGGUUGACUGUACUACCCAACAUUU
............................(...)...............................................................................................
>AAGU03010363.1/30003-30129
UCUGGAUGACCAAGAAGGCAGAAUCUGAUGAAGCAAGACUGCUUAUACAAUUCUCUUAGAAAAAAGGAUUGGAGAGAGCAGCCCUUACUGGAAAAUAUCACAGGGUUGCCUGUACUAUCCAAUAUUG
............................(...)..............................................................................................
>AANU01114943.1/32839-32967
ACUGGAGGACUAAGGAGGCCAGAUCUGAUAAGGCAAGAUUUUGUAAUACGUUGCUCCUAGAAAAAAGGGUUGGCAAGAGCAGCCCUCACUGGAGACUAUCACAGGGACUGACUGUUCAACCCGACACUC
............................(...)................................................................................................
>AAYZ01608759.1/256-126
CCUGGAGGACUAAGAAGGCCAAGUCUGAUGAAGCAAGCCUUGGCUGAUACACUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUUCAUGGAGAAGGUCCCAGGGGCUGACUGUACUACCCAACAUUC
............................(...)..................................................................................................
>AAIY01148998.1/131-258
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGGCUCUGCUGAUACACUCCUCCUAGACAAAAGGGGUGGAGAGAGCAGCCCUUAUGGAGAACAUCACAGGGCUGACUUUACUACCCAACAUUU
............................(...)...............................................................................................
>AL645803.19/80160-80034
CUGGAGGAUCAAGGAGGCUGAGUCUGAUGAAGCAAGACUUUGUUGAUACACUCCUCCUAGACAAAAGGGUGGGGAGAGCAGCCCGUACUGGAGAAAGCCACAGGGCUCACUGUGCUACCCAACAUUU
...........................(...)...............................................................................................
>AAGV020375682.1/3325-3454
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUCUGCUGAUACAUUCCUCCUAGAAAAUAAGGGUUGGAGAGAGUAGCCCUUAUUGGAGAAUAUCACAGGGCUGACUGUACUACCCAACAUUU
............................(...).................................................................................................
>AAKN02015658.1/41428-41300
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAAAAAAAGGGGUUGGAGAGAGCAGCCCAAAUUGGAGAACGUCACAGGGCUGACUGUACUACCCAACAUUC
............................(...)................................................................................................
>AAGW02000423.1/11522-11651
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACACUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCUCUCCUUGGAGAAGAUCACGGGGGCUGACUGUACUACCCGACAUUC
............................(...).................................................................................................
>AAPY01340777.1/683-811
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACCCUCCUCCUAGAGAAAAGGGUUGAAGAGAGCAGCCGUCAUUGGAGAAUGUCGCAGGGCUGACUGUACCACCCAACAUUG
............................(...)................................................................................................
>AAQR03049276.1/452-580
CCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGAUUUGGCUGAUACAUUCCUCGUAGAGAAAAGGGUUGGAGAGAGAAGCCCUUACUGGAGAGUGUCACAGGGCUGACUGUACUACCCAACACAU
............................(...)................................................................................................
>AAEX03005332.1/11482-11610
GCUGGAGGACUAAGAAGGCGGAGUCUGGUGAAGUAAGACUCUGCUGAUACAAUCCUCCUAGAAAACAGGGUGGGAGAGAGCAGCCCUCGGUGGAGAACAGCACAGGGCUGACUGUACGACCCAACAUGC
............................(...)................................................................................................
2 U(RAR)G
R(AR(A))
 18 75.0
>AY270787.1/135-13
ACUGGAGGACUAAGGAGGCUGGGUCUGAUGAGGCAAGAUUUUGCUGAUACAUUGCUCCUAGAAAAAAGGGUUGGCAAGAGCAGCCCUGGAGACUCACACGGCUGACUGUUCUACCCAACACUC
............................(...)..............................(..(......................................................))
>AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
............................(...)..............................(..(............................................................))
>AAQR03049276.1/452-580
CCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGAUUUGGCUGAUACAUUCCUCGUAGAGAAAAGGGUUGGAGAGAGAAGCCCUUACUGGAGAGUGUCACAGGGCUGACUGUACUACCCAACACAU
............................(...)..............................(..(............................................................))
>AAGU03010363.1/30003-30129
UCUGGAUGACCAAGAAGGCAGAAUCUGAUGAAGCAAGACUGCUUAUACAAUUCUCUUAGAAAAAAGGAUUGGAGAGAGCAGCCCUUACUGGAAAAUAUCACAGGGUUGCCUGUACUAUCCAAUAUUG
............................(...)............................(..(............................................................))
>AAGW02000423.1/11522-11651
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACACUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCUCUCCUUGGAGAAGAUCACGGGGGCUGACUGUACUACCCGACAUUC
............................(...)..............................(..(.............................................................))
>AALT01070738.1/638-766
UCUGGAGGAUCAAGAAGGCGGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAGAAAGGGGUCAGAGAGAGCAGCCCUGCCUGGAGCACUGCACAGGGCUGACUGCACCACCCGACAUUC
............................(...).............................(..(.............................................................))
>AAGV020375682.1/3325-3454
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUCUGCUGAUACAUUCCUCCUAGAAAAUAAGGGUUGGAGAGAGUAGCCCUUAUUGGAGAAUAUCACAGGGCUGACUGUACUACCCAACAUUU
............................(...)...........................(..(................................................................))
>FJ915949.1/1-128
CUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
...........................(...)..............................(..(............................................................))
>AAWR02038660.1/76508-76636
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAAAAAGGGGUUGGAGAGAGCAGCCCUUAUUGGAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
............................(...).............................(..(.............................................................))
>AAKN02015658.1/41428-41300
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAAAAAAAGGGGUUGGAGAGAGCAGCCCAAAUUGGAGAACGUCACAGGGCUGACUGUACUACCCAACAUUC
............................(...)............................(..(.............................................................)).
>AJ609483.1/1-129
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
............................(...)..............................(..(............................................................))
>AANU01114943.1/32839-32967
ACUGGAGGACUAAGGAGGCCAGAUCUGAUAAGGCAAGAUUUUGUAAUACGUUGCUCCUAGAAAAAAGGGUUGGCAAGAGCAGCCCUCACUGGAGACUAUCACAGGGACUGACUGUUCAACCCGACACUC
............................(...).............................(..(.............................................................))
>AAIY01148998.1/131-258
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGGCUCUGCUGAUACACUCCUCCUAGACAAAAGGGGUGGAGAGAGCAGCCCUUAUGGAGAACAUCACAGGGCUGACUUUACUACCCAACAUUU
............................(...)..............................(..(...........................................................))
>AAYZ01608759.1/256-126
CCUGGAGGACUAAGAAGGCCAAGUCUGAUGAAGCAAGCCUUGGCUGAUACACUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUUCAUGGAGAAGGUCCCAGGGGCUGACUGUACUACCCAACAUUC
............................(...).............................(..(............................................................).)..
>AANN01670216.1/501-630
GGUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAGAAAAGGGUUUGAGAGAGCAGCUCUUACCGGGAGAAAGUCACAGGGCUGACUGUAGUACCCAACAUUC
............................(...)..............................(..(............................................................)).
>AAFC03006841.1/13718-13584
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUCCGUGUGUUAUAGAAUAUCACAGGGUUGACUGUAUGACCCGACAUUC
............................(...)...............................(..(............................................................).)....
>AAEX03005332.1/11482-11610
GCUGGAGGACUAAGAAGGCGGAGUCUGGUGAAGUAAGACUCUGCUGAUACAAUCCUCCUAGAAAACAGGGUGGGAGAGAGCAGCCCUCGGUGGAGAACAGCACAGGGCUGACUGUACGACCCAACAUGC
............................(...)...........................(..(..............................................................).)
>AAPY01340777.1/683-811
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACCCUCCUCCUAGAGAAAAGGGUUGAAGAGAGCAGCCGUCAUUGGAGAAUGUCGCAGGGCUGACUGUACCACCCAACAUUG
............................(...)..............................(..(............................................................))
3 U(RAR)G
R(AR(A))
((C)N)A
 15 62.5
>AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
..((........................(...)........................).)...(..(............................................................))
>AALT01070738.1/638-766
UCUGGAGGAUCAAGAAGGCGGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAGAAAGGGGUCAGAGAGAGCAGCCCUGCCUGGAGCACUGCACAGGGCUGACUGCACCACCCGACAUUC
..((........................(...)........................).)..(..(.............................................................))
>AAGW02000423.1/11522-11651
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACACUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCUCUCCUUGGAGAAGAUCACGGGGGCUGACUGUACUACCCGACAUUC
..((........................(...)........................).)...(..(.............................................................))
>AAEX03005332.1/11482-11610
GCUGGAGGACUAAGAAGGCGGAGUCUGGUGAAGUAAGACUCUGCUGAUACAAUCCUCCUAGAAAACAGGGUGGGAGAGAGCAGCCCUCGGUGGAGAACAGCACAGGGCUGACUGUACGACCCAACAUGC
..((........................(...)........................).)(..(..............................................................).)
>AJ609483.1/1-129
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
..((........................(...)........................).)...(..(............................................................))
>AAYZ01608759.1/256-126
CCUGGAGGACUAAGAAGGCCAAGUCUGAUGAAGCAAGCCUUGGCUGAUACACUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUUCAUGGAGAAGGUCCCAGGGGCUGACUGUACUACCCAACAUUC
..((........................(...)........................).)..(..(............................................................).)..
>AAFC03006841.1/13718-13584
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUCCGUGUGUUAUAGAAUAUCACAGGGUUGACUGUAUGACCCGACAUUC
..((........................(...)........................).)....(..(............................................................).)....
>AAKN02015658.1/41428-41300
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAAAAAAAGGGGUUGGAGAGAGCAGCCCAAAUUGGAGAACGUCACAGGGCUGACUGUACUACCCAACAUUC
..((........................(...)........................).).(..(.............................................................)).
>AAPY01340777.1/683-811
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACCCUCCUCCUAGAGAAAAGGGUUGAAGAGAGCAGCCGUCAUUGGAGAAUGUCGCAGGGCUGACUGUACCACCCAACAUUG
..((........................(...)........................).)...(..(............................................................))
>AANN01670216.1/501-630
GGUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAGAAAAGGGUUUGAGAGAGCAGCUCUUACCGGGAGAAAGUCACAGGGCUGACUGUAGUACCCAACAUUC
..((........................(...)........................).)...(..(............................................................)).
>AAWR02038660.1/76508-76636
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAAAAAGGGGUUGGAGAGAGCAGCCCUUAUUGGAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
..((........................(...)........................).)..(..(.............................................................))
>AAGV020375682.1/3325-3454
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUCUGCUGAUACAUUCCUCCUAGAAAAUAAGGGUUGGAGAGAGUAGCCCUUAUUGGAGAAUAUCACAGGGCUGACUGUACUACCCAACAUUU
..((........................(...)........................).)(..(................................................................))
>FJ915949.1/1-128
CUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
.((........................(...)........................).)...(..(............................................................))
>AANU01114943.1/32839-32967
ACUGGAGGACUAAGGAGGCCAGAUCUGAUAAGGCAAGAUUUUGUAAUACGUUGCUCCUAGAAAAAAGGGUUGGCAAGAGCAGCCCUCACUGGAGACUAUCACAGGGACUGACUGUUCAACCCGACACUC
..((........................(...).......................).)...(..(.............................................................))
>AAIY01148998.1/131-258
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGGCUCUGCUGAUACACUCCUCCUAGACAAAAGGGGUGGAGAGAGCAGCCCUUAUGGAGAACAUCACAGGGCUGACUUUACUACCCAACAUUU
..((........................(...)........................).)...(..(...........................................................))
4 U(RAR)G
R(AR(A))
((C)N)A
A(C(U))
 12 50.0
>AAFC03006841.1/13718-13584
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUCCGUGUGUUAUAGAAUAUCACAGGGUUGACUGUAUGACCCGACAUUC
..((....(.(.................(...).................).)....).)(..(.....................................................................))
>AAIY01148998.1/131-258
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGGCUCUGCUGAUACACUCCUCCUAGACAAAAGGGGUGGAGAGAGCAGCCCUUAUGGAGAACAUCACAGGGCUGACUUUACUACCCAACAUUU
..((....(.(.................(...).................).)....).)...(..(...........................................................))
>AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
..((....(.(.................(...).................).)....).)...(..(............................................................))
>FJ915949.1/1-128
CUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
.((....(.(.................(...).................).)....).)...(..(............................................................))
>AAKN02015658.1/41428-41300
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAAAAAAAGGGGUUGGAGAGAGCAGCCCAAAUUGGAGAACGUCACAGGGCUGACUGUACUACCCAACAUUC
..((....(.(.................(...).................).)....).)(..(...............................................................))
>AAPY01340777.1/683-811
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACCCUCCUCCUAGAGAAAAGGGUUGAAGAGAGCAGCCGUCAUUGGAGAAUGUCGCAGGGCUGACUGUACCACCCAACAUUG
..((....(.(.................(...).................).)....).)..(..(.........................................................))....
>AAEX03005332.1/11482-11610
GCUGGAGGACUAAGAAGGCGGAGUCUGGUGAAGUAAGACUCUGCUGAUACAAUCCUCCUAGAAAACAGGGUGGGAGAGAGCAGCCCUCGGUGGAGAACAGCACAGGGCUGACUGUACGACCCAACAUGC
..((....(.(.................(...).................).)....).)(..(..............................................................).)
>AAWR02038660.1/76508-76636
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAAAAAGGGGUUGGAGAGAGCAGCCCUUAUUGGAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
..((....(.(.................(...).................).)....).)..(..(.............................................................))
>AANN01670216.1/501-630
GGUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAGAAAAGGGUUUGAGAGAGCAGCUCUUACCGGGAGAAAGUCACAGGGCUGACUGUAGUACCCAACAUUC
..((....(.(.................(...).................).)....).)...(..(............................................................)).
>AJ609483.1/1-129
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
..((....(.(.................(...).................).)....).)...(..(............................................................))
>AAGW02000423.1/11522-11651
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACACUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCUCUCCUUGGAGAAGAUCACGGGGGCUGACUGUACUACCCGACAUUC
..((....(.(.................(...).................).)....).)...(..(.............................................................))
>AAYZ01608759.1/256-126
CCUGGAGGACUAAGAAGGCCAAGUCUGAUGAAGCAAGCCUUGGCUGAUACACUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUUCAUGGAGAAGGUCCCAGGGGCUGACUGUACUACCCAACAUUC
..((....(.(.................(...).................).)....).)..(..(............................................................).)..
5 U(RAR)G
R(AR(A))
((C)N)A
A(C(U))
((U)GA)U
 11 45.8
>AAGW02000423.1/11522-11651
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACACUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCUCUCCUUGGAGAAGAUCACGGGGGCUGACUGUACUACCCGACAUUC
..((....(.(....((...........(...)...........)..)..).)....).)...(..(.............................................................))
>AAIY01148998.1/131-258
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGGCUCUGCUGAUACACUCCUCCUAGACAAAAGGGGUGGAGAGAGCAGCCCUUAUGGAGAACAUCACAGGGCUGACUUUACUACCCAACAUUU
..((....(.(....((...........(...)...........)..)..).)....).)...(..(...........................................................))
>AAEX03005332.1/11482-11610
GCUGGAGGACUAAGAAGGCGGAGUCUGGUGAAGUAAGACUCUGCUGAUACAAUCCUCCUAGAAAACAGGGUGGGAGAGAGCAGCCCUCGGUGGAGAACAGCACAGGGCUGACUGUACGACCCAACAUGC
..((....(.(....((...........(...)...........)..)..).)....).)(..(..............................................................).)
>AJ609483.1/1-129
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
..((....(.(....((...........(...)...........)..)..).)....).)...(..(............................................................))
>AAKN02015658.1/41428-41300
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAAAAAAAGGGGUUGGAGAGAGCAGCCCAAAUUGGAGAACGUCACAGGGCUGACUGUACUACCCAACAUUC
..((....(.(....((...........(...)...........)..)..).)....).)(..(...............................................................))
>AAPY01340777.1/683-811
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACCCUCCUCCUAGAGAAAAGGGUUGAAGAGAGCAGCCGUCAUUGGAGAAUGUCGCAGGGCUGACUGUACCACCCAACAUUG
..((....(.(....((...........(...)...........)..)..).)....).)..(..(.........................................................))....
>AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
..((....(.(....((...........(...)...........)..)..).)....).)...(..(............................................................))
>AAWR02038660.1/76508-76636
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAAAAAGGGGUUGGAGAGAGCAGCCCUUAUUGGAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
..((....(.(....((...........(...)...........)..)..).)....).)..(..(.............................................................))
>FJ915949.1/1-128
CUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
.((....(.(....((...........(...)...........)..)..).)....).)...(..(............................................................))
>AAYZ01608759.1/256-126
CCUGGAGGACUAAGAAGGCCAAGUCUGAUGAAGCAAGCCUUGGCUGAUACACUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUUCAUGGAGAAGGUCCCAGGGGCUGACUGUACUACCCAACAUUC
..((....(.(....((...........(...)...........)..)..).)....).)..(..(............................................................).)..
>AANN01670216.1/501-630
GGUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAGAAAAGGGUUUGAGAGAGCAGCUCUUACCGGGAGAAAGUCACAGGGCUGACUGUAGUACCCAACAUUC
..((....(.(....((...........(...)...........)..)..).)....).)...(..(............................................................)).
6 U(RAR)G
R(AR(A))
((C)N)A
A(C(U))
((U)GA)U
((C)N)N
 9 37.5
>AJ609483.1/1-129
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
..((....(.(....((....((.....(...).....).)...)..)..).)....).)...(..(............................................................))
>AAKN02015658.1/41428-41300
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAAAAAAAGGGGUUGGAGAGAGCAGCCCAAAUUGGAGAACGUCACAGGGCUGACUGUACUACCCAACAUUC
..((....(.(....((........((.(...)).)........)..)..).)....).)(..(...............................................................))
>AAWR02038660.1/76508-76636
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAAAAAGGGGUUGGAGAGAGCAGCCCUUAUUGGAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
..((....(.(....((........((.(...)).)........)..)..).)....).)..(..(.............................................................))
>AAIY01148998.1/131-258
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGGCUCUGCUGAUACACUCCUCCUAGACAAAAGGGGUGGAGAGAGCAGCCCUUAUGGAGAACAUCACAGGGCUGACUUUACUACCCAACAUUU
..((....(.(....((........((.(...)).)........)..)..).)....).).............(..(....................................).)............
>AAYZ01608759.1/256-126
CCUGGAGGACUAAGAAGGCCAAGUCUGAUGAAGCAAGCCUUGGCUGAUACACUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUUCAUGGAGAAGGUCCCAGGGGCUGACUGUACUACCCAACAUUC
..((....(.(....((........((.(...)).)........)..)..).)....).)..(..(............................................................).)..
>AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
..((....(.(....((........((.(...)).)........)..)..).)....).)...(..(............................................................))
>FJ915949.1/1-128
CUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
.((....(.(....((........((.(...)).)........)..)..).)....).)...(..(............................................................))
>AANN01670216.1/501-630
GGUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAGAAAAGGGUUUGAGAGAGCAGCUCUUACCGGGAGAAAGUCACAGGGCUGACUGUAGUACCCAACAUUC
..((....(.(....((........((.(...)).)........)..)..).)....).)...(..(............................................................)).
>AAGW02000423.1/11522-11651
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACACUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCUCUCCUUGGAGAAGAUCACGGGGGCUGACUGUACUACCCGACAUUC
..((....(.(....((........((.(...)).)........)..)..).)....).)...(..(.............................................................))

>AANN01670216.1/501-630
GGUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAGAAAAGGGUUUGAGAGAGCAGCUCUUACCGGGAGAAAGUCACAGGGCUGACUGUAGUACCCAACAUUC
............................(...).................................................................................................
............................(...)..............................(..(............................................................)).
..((........................(...)........................).)...(..(............................................................)).
..((....(.(.................(...).................).)....).)...(..(............................................................)).
..((....(.(....((...........(...)...........)..)..).)....).)...(..(............................................................)).
..((....(.(....((........((.(...)).)........)..)..).)....).)...(..(............................................................)).
>AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
............................(...)................................................................................................
............................(...)..............................(..(............................................................))
..((........................(...)........................).)...(..(............................................................))
..((....(.(.................(...).................).)....).)...(..(............................................................))
..((....(.(....((...........(...)...........)..)..).)....).)...(..(............................................................))
..((....(.(....((........((.(...)).)........)..)..).)....).)...(..(............................................................))
>AJ609483.1/1-129
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
............................(...)................................................................................................
............................(...)..............................(..(............................................................))
..((........................(...)........................).)...(..(............................................................))
..((....(.(.................(...).................).)....).)...(..(............................................................))
..((....(.(....((...........(...)...........)..)..).)....).)...(..(............................................................))
..((....(.(....((....((.....(...).....).)...)..)..).)....).)...(..(............................................................))
>AAWR02038660.1/76508-76636
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAAAAAGGGGUUGGAGAGAGCAGCCCUUAUUGGAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
............................(...)................................................................................................
............................(...).............................(..(.............................................................))
..((........................(...)........................).)..(..(.............................................................))
..((....(.(.................(...).................).)....).)..(..(.............................................................))
..((....(.(....((...........(...)...........)..)..).)....).)..(..(.............................................................))
..((....(.(....((........((.(...)).)........)..)..).)....).)..(..(.............................................................))
>FJ915949.1/1-128
CUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCCUUCACUGAAGAGUAUCACAGGGCUGACUGUACUACCCAACACUC
...........................(...)................................................................................................
...........................(...)..............................(..(............................................................))
.((........................(...)........................).)...(..(............................................................))
.((....(.(.................(...).................).)....).)...(..(............................................................))
.((....(.(....((...........(...)...........)..)..).)....).)...(..(............................................................))
.((....(.(....((........((.(...)).)........)..)..).)....).)...(..(............................................................))
>AAYZ01608759.1/256-126
CCUGGAGGACUAAGAAGGCCAAGUCUGAUGAAGCAAGCCUUGGCUGAUACACUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUUCAUGGAGAAGGUCCCAGGGGCUGACUGUACUACCCAACAUUC
............................(...)..................................................................................................
............................(...).............................(..(............................................................).)..
..((........................(...)........................).)..(..(............................................................).)..
..((....(.(.................(...).................).)....).)..(..(............................................................).)..
..((....(.(....((...........(...)...........)..)..).)....).)..(..(............................................................).)..
..((....(.(....((........((.(...)).)........)..)..).)....).)..(..(............................................................).)..
>AAIY01148998.1/131-258
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGGCUCUGCUGAUACACUCCUCCUAGACAAAAGGGGUGGAGAGAGCAGCCCUUAUGGAGAACAUCACAGGGCUGACUUUACUACCCAACAUUU
............................(...)...............................................................................................
............................(...)..............................(..(...........................................................))
..((........................(...)........................).)...(..(...........................................................))
..((....(.(.................(...).................).)....).)...(..(...........................................................))
..((....(.(....((...........(...)...........)..)..).)....).)...(..(...........................................................))
..((....(.(....((........((.(...)).)........)..)..).)....).).............(..(....................................).)............
>AAKN02015658.1/41428-41300
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACAUUCCUCCUAAAAAAAGGGGUUGGAGAGAGCAGCCCAAAUUGGAGAACGUCACAGGGCUGACUGUACUACCCAACAUUC
............................(...)................................................................................................
............................(...)............................(..(.............................................................)).
..((........................(...)........................).).(..(.............................................................)).
..((....(.(.................(...).................).)....).)(..(...............................................................))
..((....(.(....((...........(...)...........)..)..).)....).)(..(...............................................................))
..((....(.(....((........((.(...)).)........)..)..).)....).)(..(...............................................................))
>AAGW02000423.1/11522-11651
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCGGCUGAUACACUCCUCCUAGAAAAAAGGGUUGGAGAGAGCAGCUCUCCUUGGAGAAGAUCACGGGGGCUGACUGUACUACCCGACAUUC
............................(...).................................................................................................
............................(...)..............................(..(.............................................................))
..((........................(...)........................).)...(..(.............................................................))
..((....(.(.................(...).................).)....).)...(..(.............................................................))
..((....(.(....((...........(...)...........)..)..).)....).)...(..(.............................................................))
..((....(.(....((........((.(...)).)........)..)..).)....).)...(..(.............................................................))
>AAPY01340777.1/683-811
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUUUGCUGAUACCCUCCUCCUAGAGAAAAGGGUUGAAGAGAGCAGCCGUCAUUGGAGAAUGUCGCAGGGCUGACUGUACCACCCAACAUUG
............................(...)................................................................................................
............................(...)..............................(..(............................................................))
..((........................(...)........................).)...(..(............................................................))
..((....(.(.................(...).................).)....).)..(..(.........................................................))....
..((....(.(....((...........(...)...........)..)..).)....).)..(..(.........................................................))....
>AAEX03005332.1/11482-11610
GCUGGAGGACUAAGAAGGCGGAGUCUGGUGAAGUAAGACUCUGCUGAUACAAUCCUCCUAGAAAACAGGGUGGGAGAGAGCAGCCCUCGGUGGAGAACAGCACAGGGCUGACUGUACGACCCAACAUGC
............................(...)................................................................................................
............................(...)...........................(..(..............................................................).)
..((........................(...)........................).)(..(..............................................................).)
..((....(.(.................(...).................).)....).)(..(..............................................................).)
..((....(.(....((...........(...)...........)..)..).)....).)(..(..............................................................).)
>AAFC03006841.1/13718-13584
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAAAAAAAGGGUUGGAGAGAGCAGCCCUCCGUGUGUUAUAGAAUAUCACAGGGUUGACUGUAUGACCCGACAUUC
............................(...)......................................................................................................
............................(...)...............................(..(............................................................).)....
..((........................(...)........................).)....(..(............................................................).)....
..((....(.(.................(...).................).)....).)(..(.....................................................................))
>AALT01070738.1/638-766
UCUGGAGGAUCAAGAAGGCGGAGUCUGAUGAAGCAAGACUCGGCUGAUACAAUCCUCCUAGAGAAAGGGGUCAGAGAGAGCAGCCCUGCCUGGAGCACUGCACAGGGCUGACUGCACCACCCGACAUUC
............................(...)................................................................................................
............................(...).............................(..(.............................................................))
..((........................(...)........................).)..(..(.............................................................))
>AANU01114943.1/32839-32967
ACUGGAGGACUAAGGAGGCCAGAUCUGAUAAGGCAAGAUUUUGUAAUACGUUGCUCCUAGAAAAAAGGGUUGGCAAGAGCAGCCCUCACUGGAGACUAUCACAGGGACUGACUGUUCAACCCGACACUC
............................(...)................................................................................................
............................(...).............................(..(.............................................................))
..((........................(...).......................).)...(..(.............................................................))
>AAGV020375682.1/3325-3454
ACUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGACUCUGCUGAUACAUUCCUCCUAGAAAAUAAGGGUUGGAGAGAGUAGCCCUUAUUGGAGAAUAUCACAGGGCUGACUGUACUACCCAACAUUU
............................(...).................................................................................................
............................(...)...........................(..(................................................................))
..((........................(...)........................).)(..(................................................................))
>AY270787.1/135-13
ACUGGAGGACUAAGGAGGCUGGGUCUGAUGAGGCAAGAUUUUGCUGAUACAUUGCUCCUAGAAAAAAGGGUUGGCAAGAGCAGCCCUGGAGACUCACACGGCUGACUGUUCUACCCAACACUC
............................(...)..........................................................................................
............................(...)..............................(..(......................................................))
>AAGU03010363.1/30003-30129
UCUGGAUGACCAAGAAGGCAGAAUCUGAUGAAGCAAGACUGCUUAUACAAUUCUCUUAGAAAAAAGGAUUGGAGAGAGCAGCCCUUACUGGAAAAUAUCACAGGGUUGCCUGUACUAUCCAAUAUUG
............................(...)..............................................................................................
............................(...)............................(..(............................................................))
>AAQR03049276.1/452-580
CCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGUAAGAUUUGGCUGAUACAUUCCUCGUAGAGAAAAGGGUUGGAGAGAGAAGCCCUUACUGGAGAGUGUCACAGGGCUGACUGUACUACCCAACACAU
............................(...)................................................................................................
............................(...)..............................(..(............................................................))
>AANG01021475.1/9614-9486
GCUGGAGGACUAAGAAGGCUGAGUCUGGUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAGAACAGGGUGGGCGAGAGCAGCCCUCACUGGAGGACACCACGGGGCUGACUGCACGACCCGACACGC
............................(...)................................................................................................
>AABR05089070.1/21288-21415
ACUGGAGGACCAAGAAGGCGGAGUCUGAUGAAGCAAGACUUUGCUGAUACACUCCUCCUAGACAAAGGGGUGGAGAGAGCAGCCCUUAUUGGAGAAAACCACAGGGCUCACUGUACUACCCAACAUUU
............................(...)...............................................................................................
>AAPE02017312.1/35937-35810
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAAAAUAAAGGGUGGAGAGAGCAGCCCUUAUUGGAGAAUAUCACAGGGUUGACUGUACUACCCAACAUUU
............................(...)...............................................................................................
>AL645803.19/80160-80034
CUGGAGGAUCAAGGAGGCUGAGUCUGAUGAAGCAAGACUUUGUUGAUACACUCCUCCUAGACAAAAGGGUGGGGAGAGCAGCCCGUACUGGAGAAAGCCACAGGGCUCACUGUGCUACCCAACAUUU
...........................(...)...............................................................................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 U(RAR)G < 0.001 61.7
AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
...................................................................................................1.............................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
2 R(AR(A)) < 0.001 4.03
AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
...................................................................................................1.............................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
3 A(C(U)) < 0.001 3.44
AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
...................................................................................................1.............................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
4 ((U)GA)U < 0.001 20.5
AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
...................................................................................................1.............................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
5 ((C)N)A < 0.001 5.85
AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
...................................................................................................1.............................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
6 ((C)N)N < 0.001 2.65
AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
...................................................................................................1.............................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 U(RAR)G < 0.001 61.7
AAFR03052106.1/48119-48247
GCUGGAGGACUAAGAAGGCUGAGUCUGAUGAAGCUAGACUCUGCUGAUACAAUCCUCCUACAGAAAAGGGUUGGAGAGAGCAGUCCCACUUCGAGAAUAGUAAAGGACUGACUGUACUACCCAACAUUA
...................................................................................................1.............................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).