D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-216   (Rfam: RF00654)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
((U)CN)C
(.NN.().UC.)
C(A(A))
(.YUNNN.)
97.0
100.0
100.0
97.0
((U)CN)C
C(A(A))
(.YUNNN.)

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.1 %
(± 0.121 %)
Decision tree:

5-fold cross-validation: 87.7 %
(± 10.1 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 90.4 %
(± 6.69 %)
of AAFR03002982.1/16332-16244
AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
(.(((((((((((((..((((((((((((.(((((((((((......)))))..)))))).))))))))))))..))))))))))))))
.........1.........2.........3.........4.........5.........6.........7.........8.........
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789

abstract shape: ()

Number of sequences
Structure ORBs (out of 33) (%)
1 ((U)CN)C
 31 93.9
>AANN01395871.1/902-990
GGCUAUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGCGAUAUUCAUACAAUCCCCCACAGUGGUCUCUGGGAUUAUGCCAAACAAAGCA
.....................................((...........)..)...................................
>AANH01005109.1/23387-23300
UAAGGGCUGACUGGGUAAUCUCUGCAGGCAACUGUGAUGGUGCUUUAAAUUCUCACAAUGACCUGGAGAGAUUCUGCAGUUGCCUUUU
...................................((.............)..)..................................
>AAGV020516803.1/6245-6157
AAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCUAUAGAGAUUCUACAGUCUGACAUC
...................................((..............)..)..................................
>AANH01011241.1/47022-46939
AGCUGUGAUCCAGUUUAAUCUCAGCUGGCAACUGUGAGCUUUGAUCGCCUCACAGAGCCAACUAAGAUUCACCUGAACGCAACA
......................................((....)..)....................................
>CAAE01014563.1/1137339-1137250
UGUUGUGUUUUGGUGAAAUCUCAGCUGGCAACUGUGAGUCGUUCACUAGCUGCUCUCACAAUGGCCUCUGGGAUUAUGCUAAACACAGCG
...................................((................)..).................................
>AAYZ01065394.1/6883-6795
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUAGUCUUCCAAUCCCUCACAGUGGUCUCUGGGGUUAUGCUAAACAGAGCA
.....................................((...........)..)...................................
>AAIY01552317.1/295-382
GGCUGUGGGCUGGCUUAAUCUCAGCUGGCAACUGUGAGCUGUUCGUGCAAUCCUCACAGUGGCCUCUGGGACUAUGCUACACAGAGCA
.................................((..................)..)...............................
>AAVX01063793.1/485-397
UGCCAUGAACUGGCUUAAUCUCAGCUGGCAACUGUGAGUGUUUAAUGGUUUCCCCCACAGUGGUUGCUGGGAUUAUGCUAAACACAGCA
.....................................((...........)..)...................................
>BX321898.29/72134-72045
AGCUGAUUUUUGGCAUAAUCUCAGCUGGCAACUGUGAGUAGUGUUUUCAUCCCUCUCACAGGCGCUGCUGGGGUUCUGUCACACACAGCA
...................................((................)..).................................
>AADN03003108.1/28627-28539
GAGUCACAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUCUUUAUAGCAAUCUCACAAUUACCUGUAGAGAUUCUACAAUCUGGCAUC
...................................((..............)..)..................................
>AAPN01112677.1/27856-27944
GGCUGUGAAUCGGCUUAAUCUCAGCUGGCAACUGUGAGAUGCUAACCAAUUCUCCCACAGUGGCAUCUGGGAUUAUGCUAAACACAGCA
...................................((...............)..).................................
>AAPY01560157.1/6445-6357
AAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGCAAUCACACACUUGCCCGUAGAGAUUCUACAGUCUGACAUC
...................................((..............)..)..................................
>AAQR03052256.1/6761-6673
GAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAAUCACACACUUACCAGUAGAGAUUCUAUAGUCUGUCACC
...................................((..............)..)..................................
>AAKN02040735.1/24209-24296
GAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAUCACACACUUACCUGUAAAGAUUCUGCAGUCUGACAGC
...................................((.............)..)..................................
>AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
...................................((..............)..)..................................
>AAPN01112677.1/19396-19484
AAAUCGCAGACUGGGAAAUCUCUGCUGGCAAAUGUGGUGUCACGGUAGCAAUCGCACAAUUACCUGUAGAGAUUCUGCAAUCUGGCUUU
...................................((..............)..)..................................
>AAWZ02015727.1/100859-100771
GGCUGUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGAGCAGUUUCCAAAUCCUCUCACAGUGGUUUCUGGGAUUAUGCUAAACACAGCA
...................................((...............)..).................................
>AAQR03052253.1/13725-13637
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUUCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
.................................((...................)..)...............................
>AACN010698325.1/574-662
AAGUGACAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCCGUAGAGAUUCUGCAGUCUGACAUC
...................................((..............)..)..................................
>AAWR02003896.1/155482-155568
GGCUGUGAGUUGGUUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUAAAUCCCCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
...................................((............)..)..................................
>AAHX01081871.1/22293-22381
AGCUAUGAGUUAGUUUAAUCUCAGCUGGCAACUGUGAGAUGUCCCUAUCAUUCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
.................................((...................)..)...............................
>AAIY01782907.1/856-772
AAGUGGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGACGUUGCUGCCGAAAUCACACACUUGCCCGUAGAGAUGCUGCAGUCUGA
...................................((..............)..)..............................
>AAQQ01539574.1/518-430
AAGUGGCAGACUAGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAAUCACACACUUACCCGUAGAGAUUCUUUGGUCUGGCAGC
...................................((..............)..)..................................
>AAWZ02015728.1/1581-1492
AAGUCACAGACUGAGAAAUCUCUGCAGGCAAAUGUGAUGUCUUGACCAGCAAUCUCACAGUUACCAGCAGAGGUUCUGCAAUCUGGACUG
...................................(.(..............)..)..................................
>BX321898.29/72434-72349
UAUAAACUGACUGGGUAAUCUCUGCAGGCAACUGUGAUGUGAUUACAGUCUCACAUUGACCUGAAGAGGUUGAGCAGUCUGUUUAC
.................................((...............)..)................................
>CAAE01014563.1/1138009-1137922
UUUAGGUUGACUGUUUAAUCUCUGCAGGCAACUGUGAUGGUGAUUUUUAUUCUCACAAUCACCUGGAGAGAUUCUGCAGUUUAUUUAA
.................................(..(...............)..)................................
>AALT01617626.1/3023-3113
AGCUAUGAGUUGGUUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUUCCCCCCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
...................................((..............)..)....................................
>CAAB02004893.1/247202-247115
GUUACGUUGACUGUUUAAUCUCUGCAGGCAACUGUGAUGGUGUUUUAUAUUCUCACAAUCACCUGGAGAGAUUCUGCAGUUUAUCUAA
...................................((.............)..)..................................
>AAVX01147466.1/944-1031
AAGCUACAGACUGGAUAAUCUCUGCAGGCAACUGUGAAGACCUGCCUCUAUCUCACAAUAGCCUCCAGAGGUUCUGUAGUCUGUGGCA
...................................((.............)..)..................................
>BAAE01230816.1/685-599
CAAAGGCUGACUGGGUAAUCUCUGCAGGCAACUGUGAUGGUGAUUUCAUUCUCACAAUCACCUGGAGAGAUUUUGCAGUUUGUCUAA
.................................(..(..............)..)................................
>AY866221.1/470-558
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUCCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
.....................................((...........)..)...................................
2 ((U)CN)C
(.NN.().UC.)
 27 81.8
>AAYZ01065394.1/6883-6795
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUAGUCUUCCAAUCCCUCACAGUGGUCUCUGGGGUUAUGCUAAACAGAGCA
......................(...(..........((...........)..)..........)..).....................
>AAIY01552317.1/295-382
GGCUGUGGGCUGGCUUAAUCUCAGCUGGCAACUGUGAGCUGUUCGUGCAAUCCUCACAGUGGCCUCUGGGACUAUGCUACACAGAGCA
......................(...(......((..................)..)......)..).....................
>AAQR03052253.1/13725-13637
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUUCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
......................(...(......((...................)..)......)..).....................
>AAQR03052256.1/6761-6673
GAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAAUCACACACUUACCAGUAGAGAUUCUAUAGUCUGUCACC
..............(..(.................((..............)..).................)..).............
>AACN010698325.1/574-662
AAGUGACAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCCGUAGAGAUUCUGCAGUCUGACAUC
..............(..(.................((..............)..).................)..).............
>CAAB02004893.1/247202-247115
GUUACGUUGACUGUUUAAUCUCUGCAGGCAACUGUGAUGGUGUUUUAUAUUCUCACAAUCACCUGGAGAGAUUCUGCAGUUUAUCUAA
..............(..(.................((.............)..).................)..).............
>AADN03003108.1/28627-28539
GAGUCACAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUCUUUAUAGCAAUCUCACAAUUACCUGUAGAGAUUCUACAAUCUGGCAUC
..............(..(.................((..............)..).................)..).............
>AAPY01560157.1/6445-6357
AAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGCAAUCACACACUUGCCCGUAGAGAUUCUACAGUCUGACAUC
..............(..(.................((..............)..).................)..).............
>CAAE01014563.1/1137339-1137250
UGUUGUGUUUUGGUGAAAUCUCAGCUGGCAACUGUGAGUCGUUCACUAGCUGCUCUCACAAUGGCCUCUGGGAUUAUGCUAAACACAGCG
......................(...(........((................)..)........)..).....................
>AAPN01112677.1/19396-19484
AAAUCGCAGACUGGGAAAUCUCUGCUGGCAAAUGUGGUGUCACGGUAGCAAUCGCACAAUUACCUGUAGAGAUUCUGCAAUCUGGCUUU
..............(..(.................((..............)..).................)..).............
>AAKN02040735.1/24209-24296
GAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAUCACACACUUACCUGUAAAGAUUCUGCAGUCUGACAGC
..............(..(.................((.............)..).................)..).............
>AAWZ02015727.1/100859-100771
GGCUGUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGAGCAGUUUCCAAAUCCUCUCACAGUGGUUUCUGGGAUUAUGCUAAACACAGCA
......................(...(........((...............)..)........)..).....................
>AAPN01112677.1/27856-27944
GGCUGUGAAUCGGCUUAAUCUCAGCUGGCAACUGUGAGAUGCUAACCAAUUCUCCCACAGUGGCAUCUGGGAUUAUGCUAAACACAGCA
......................(...(........((...............)..)........)..).....................
>BX321898.29/72134-72045
AGCUGAUUUUUGGCAUAAUCUCAGCUGGCAACUGUGAGUAGUGUUUUCAUCCCUCUCACAGGCGCUGCUGGGGUUCUGUCACACACAGCA
..............(..(.................((................)..)................)..).............
>AY866221.1/470-558
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUCCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
......................(...(..........((...........)..)..........)..).....................
>AAVX01147466.1/944-1031
AAGCUACAGACUGGAUAAUCUCUGCAGGCAACUGUGAAGACCUGCCUCUAUCUCACAAUAGCCUCCAGAGGUUCUGUAGUCUGUGGCA
..............(..(.................((.............)..).................)..).............
>AAGV020516803.1/6245-6157
AAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCUAUAGAGAUUCUACAGUCUGACAUC
..............(..(.................((..............)..).................)..).............
>AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
..............(..(.................((..............)..).................)..).............
>AAHX01081871.1/22293-22381
AGCUAUGAGUUAGUUUAAUCUCAGCUGGCAACUGUGAGAUGUCCCUAUCAUUCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
......................(...(......((...................)..)......)..).....................
>AAIY01782907.1/856-772
AAGUGGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGACGUUGCUGCCGAAAUCACACACUUGCCCGUAGAGAUGCUGCAGUCUGA
.......(..(........................(..(............)..)........................)..)..
>AAQQ01539574.1/518-430
AAGUGGCAGACUAGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAAUCACACACUUACCCGUAGAGAUUCUUUGGUCUGGCAGC
..............(..(.................((..............)..).................)..).............
>AAWZ02015728.1/1581-1492
AAGUCACAGACUGAGAAAUCUCUGCAGGCAAAUGUGAUGUCUUGACCAGCAAUCUCACAGUUACCAGCAGAGGUUCUGCAAUCUGGACUG
..............(..(.................((...............)..).................)..).............
>AALT01617626.1/3023-3113
AGCUAUGAGUUGGUUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUUCCCCCCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
......................(...(...........((...........)..)...........)..).....................
>CAAE01014563.1/1138009-1137922
UUUAGGUUGACUGUUUAAUCUCUGCAGGCAACUGUGAUGGUGAUUUUUAUUCUCACAAUCACCUGGAGAGAUUCUGCAGUUUAUUUAA
.............(..(................(..(...............)..)...............)...)............
>AAWR02003896.1/155482-155568
GGCUGUGAGUUGGUUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUAAAUCCCCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
......................(...(..........((..........)..).........)..).....................
>AANN01395871.1/902-990
GGCUAUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGCGAUAUUCAUACAAUCCCCCACAGUGGUCUCUGGGAUUAUGCCAAACAAAGCA
......................(...(..........((...........)..)..........)..).....................
>AANH01005109.1/23387-23300
UAAGGGCUGACUGGGUAAUCUCUGCAGGCAACUGUGAUGGUGCUUUAAAUUCUCACAAUGACCUGGAGAGAUUCUGCAGUUGCCUUUU
..............(..(.................((.............)..).................)..).............
3 ((U)CN)C
(.NN.().UC.)
C(A(A))
 23 69.7
>AADN03003108.1/28627-28539
GAGUCACAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUCUUUAUAGCAAUCUCACAAUUACCUGUAGAGAUUCUACAAUCUGGCAUC
..............(..(..........(.(....((..............)..)....).)..........)..).............
>AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
..............(..(..........(.(....((..............)..)....).)..........)..).............
>AAPN01112677.1/27856-27944
GGCUGUGAAUCGGCUUAAUCUCAGCUGGCAACUGUGAGAUGCUAACCAAUUCUCCCACAGUGGCAUCUGGGAUUAUGCUAAACACAGCA
......................(...(.(.(....((...............)..)....))..)..).....................
>AAWZ02015728.1/1581-1492
AAGUCACAGACUGAGAAAUCUCUGCAGGCAAAUGUGAUGUCUUGACCAGCAAUCUCACAGUUACCAGCAGAGGUUCUGCAAUCUGGACUG
..............(..(..........(.(....((...............)..)....).)..........)..).............
>AACN010698325.1/574-662
AAGUGACAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCCGUAGAGAUUCUGCAGUCUGACAUC
..............(..(..........(.(....((..............)..)....).)..........)..).............
>AAVX01147466.1/944-1031
AAGCUACAGACUGGAUAAUCUCUGCAGGCAACUGUGAAGACCUGCCUCUAUCUCACAAUAGCCUCCAGAGGUUCUGUAGUCUGUGGCA
..............(..(..........(.(....((.............)..)....).)..........)..).............
>AAGV020516803.1/6245-6157
AAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCUAUAGAGAUUCUACAGUCUGACAUC
..............(..(..........(.(....((..............)..)....).)..........)..).............
>CAAB02004893.1/247202-247115
GUUACGUUGACUGUUUAAUCUCUGCAGGCAACUGUGAUGGUGUUUUAUAUUCUCACAAUCACCUGGAGAGAUUCUGCAGUUUAUCUAA
..............(..(..........(.(....((.............)..)....).)..........)..).............
>AANN01395871.1/902-990
GGCUAUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGCGAUAUUCAUACAAUCCCCCACAGUGGUCUCUGGGAUUAUGCCAAACAAAGCA
......................(...(.(.(......((...........)..)......))..)..).....................
>AAPY01560157.1/6445-6357
AAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGCAAUCACACACUUGCCCGUAGAGAUUCUACAGUCUGACAUC
..............(..(..........(.(....((..............)..)....).)..........)..).............
>AAQQ01539574.1/518-430
AAGUGGCAGACUAGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAAUCACACACUUACCCGUAGAGAUUCUUUGGUCUGGCAGC
..............(..(..........(.(....((..............)..)....).)..........)..).............
>AAPN01112677.1/19396-19484
AAAUCGCAGACUGGGAAAUCUCUGCUGGCAAAUGUGGUGUCACGGUAGCAAUCGCACAAUUACCUGUAGAGAUUCUGCAAUCUGGCUUU
..............(..(..........(.(....((..............)..)....).)..........)..).............
>AANH01005109.1/23387-23300
UAAGGGCUGACUGGGUAAUCUCUGCAGGCAACUGUGAUGGUGCUUUAAAUUCUCACAAUGACCUGGAGAGAUUCUGCAGUUGCCUUUU
..............(..(..........(.(....((.............)..)....).)..........)..).............
>AAWR02003896.1/155482-155568
GGCUGUGAGUUGGUUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUAAAUCCCCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
......................(...(.(.(......((..........)..).....))..)..).....................
>AAKN02040735.1/24209-24296
GAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAUCACACACUUACCUGUAAAGAUUCUGCAGUCUGACAGC
..............(..(..........(.(....((.............)..)....).)..........)..).............
>AAQR03052256.1/6761-6673
GAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAAUCACACACUUACCAGUAGAGAUUCUAUAGUCUGUCACC
..............(..(..........(.(....((..............)..)....).)..........)..).............
>AY866221.1/470-558
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUCCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
......................(...(.(.(......((...........)..)......))..)..).....................
>BX321898.29/72134-72045
AGCUGAUUUUUGGCAUAAUCUCAGCUGGCAACUGUGAGUAGUGUUUUCAUCCCUCUCACAGGCGCUGCUGGGGUUCUGUCACACACAGCA
..............(..(..........(.(....((................)..)....))..........)..).............
>CAAE01014563.1/1137339-1137250
UGUUGUGUUUUGGUGAAAUCUCAGCUGGCAACUGUGAGUCGUUCACUAGCUGCUCUCACAAUGGCCUCUGGGAUUAUGCUAAACACAGCG
......................(...(.(.(....((................)..)....))..)..).....................
>CAAE01014563.1/1138009-1137922
UUUAGGUUGACUGUUUAAUCUCUGCAGGCAACUGUGAUGGUGAUUUUUAUUCUCACAAUCACCUGGAGAGAUUCUGCAGUUUAUUUAA
.............(..(...........(.(..(..(...............)..)...))..........)...)............
>AAYZ01065394.1/6883-6795
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUAGUCUUCCAAUCCCUCACAGUGGUCUCUGGGGUUAUGCUAAACAGAGCA
......................(...(.(.(......((...........)..)......))..)..).....................
>AAIY01552317.1/295-382
GGCUGUGGGCUGGCUUAAUCUCAGCUGGCAACUGUGAGCUGUUCGUGCAAUCCUCACAGUGGCCUCUGGGACUAUGCUACACAGAGCA
......................(...(.(.(..((..................)..)..))..)..).....................
>AAWZ02015727.1/100859-100771
GGCUGUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGAGCAGUUUCCAAAUCCUCUCACAGUGGUUUCUGGGAUUAUGCUAAACACAGCA
......................(...(.(.(....((...............)..)....))..)..).....................
4 ((U)CN)C
(.NN.().UC.)
C(A(A))
(.YUNNN.)
 16 48.5
>AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAPN01112677.1/27856-27944
GGCUGUGAAUCGGCUUAAUCUCAGCUGGCAACUGUGAGAUGCUAACCAAUUCUCCCACAGUGGCAUCUGGGAUUAUGCUAAACACAGCA
......................(...(.(.(....((...(.......)...)..)....))..)..).....................
>AACN010698325.1/574-662
AAGUGACAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCCGUAGAGAUUCUGCAGUCUGACAUC
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AADN03003108.1/28627-28539
GAGUCACAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUCUUUAUAGCAAUCUCACAAUUACCUGUAGAGAUUCUACAAUCUGGCAUC
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAQR03052256.1/6761-6673
GAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAAUCACACACUUACCAGUAGAGAUUCUAUAGUCUGUCACC
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAPY01560157.1/6445-6357
AAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGCAAUCACACACUUGCCCGUAGAGAUUCUACAGUCUGACAUC
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAKN02040735.1/24209-24296
GAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAUCACACACUUACCUGUAAAGAUUCUGCAGUCUGACAGC
..............(..(..........(.(....((...(......)..)..)....).)..........)..).............
>AAVX01147466.1/944-1031
AAGCUACAGACUGGAUAAUCUCUGCAGGCAACUGUGAAGACCUGCCUCUAUCUCACAAUAGCCUCCAGAGGUUCUGUAGUCUGUGGCA
..............(..(..........(.(....((...(.....)...)..)....).)..........)..).............
>CAAE01014563.1/1137339-1137250
UGUUGUGUUUUGGUGAAAUCUCAGCUGGCAACUGUGAGUCGUUCACUAGCUGCUCUCACAAUGGCCUCUGGGAUUAUGCUAAACACAGCG
......................(...(.(.(....((...(........)...)..)....))..)..).....................
>AAWZ02015727.1/100859-100771
GGCUGUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGAGCAGUUUCCAAAUCCUCUCACAGUGGUUUCUGGGAUUAUGCUAAACACAGCA
......................(...(.(.(....((...(.......)...)..)....))..)..).....................
>AANH01005109.1/23387-23300
UAAGGGCUGACUGGGUAAUCUCUGCAGGCAACUGUGAUGGUGCUUUAAAUUCUCACAAUGACCUGGAGAGAUUCUGCAGUUGCCUUUU
..............(..(..........(.(....((...(......)..)..)....).)..........)..).............
>AAQQ01539574.1/518-430
AAGUGGCAGACUAGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAAUCACACACUUACCCGUAGAGAUUCUUUGGUCUGGCAGC
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAGV020516803.1/6245-6157
AAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCUAUAGAGAUUCUACAGUCUGACAUC
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAWZ02015728.1/1581-1492
AAGUCACAGACUGAGAAAUCUCUGCAGGCAAAUGUGAUGUCUUGACCAGCAAUCUCACAGUUACCAGCAGAGGUUCUGCAAUCUGGACUG
..............(..(..........(.(....((...(.......)...)..)....).)..........)..).............
>CAAB02004893.1/247202-247115
GUUACGUUGACUGUUUAAUCUCUGCAGGCAACUGUGAUGGUGUUUUAUAUUCUCACAAUCACCUGGAGAGAUUCUGCAGUUUAUCUAA
..............(..(..........(.(....((...(......)..)..)....).)..........)..).............
>BX321898.29/72134-72045
AGCUGAUUUUUGGCAUAAUCUCAGCUGGCAACUGUGAGUAGUGUUUUCAUCCCUCUCACAGGCGCUGCUGGGGUUCUGUCACACACAGCA
..............(..(..........(.(....((....(.......)...)..)....))..........)..).............

>AANH01005109.1/23387-23300
UAAGGGCUGACUGGGUAAUCUCUGCAGGCAACUGUGAUGGUGCUUUAAAUUCUCACAAUGACCUGGAGAGAUUCUGCAGUUGCCUUUU
...................................((.............)..)..................................
..............(..(.................((.............)..).................)..).............
..............(..(..........(.(....((.............)..)....).)..........)..).............
..............(..(..........(.(....((...(......)..)..)....).)..........)..).............
>AAGV020516803.1/6245-6157
AAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCUAUAGAGAUUCUACAGUCUGACAUC
...................................((..............)..)..................................
..............(..(.................((..............)..).................)..).............
..............(..(..........(.(....((..............)..)....).)..........)..).............
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>CAAE01014563.1/1137339-1137250
UGUUGUGUUUUGGUGAAAUCUCAGCUGGCAACUGUGAGUCGUUCACUAGCUGCUCUCACAAUGGCCUCUGGGAUUAUGCUAAACACAGCG
...................................((................)..).................................
......................(...(........((................)..)........)..).....................
......................(...(.(.(....((................)..)....))..)..).....................
......................(...(.(.(....((...(........)...)..)....))..)..).....................
>BX321898.29/72134-72045
AGCUGAUUUUUGGCAUAAUCUCAGCUGGCAACUGUGAGUAGUGUUUUCAUCCCUCUCACAGGCGCUGCUGGGGUUCUGUCACACACAGCA
...................................((................)..).................................
..............(..(.................((................)..)................)..).............
..............(..(..........(.(....((................)..)....))..........)..).............
..............(..(..........(.(....((....(.......)...)..)....))..........)..).............
>AADN03003108.1/28627-28539
GAGUCACAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUCUUUAUAGCAAUCUCACAAUUACCUGUAGAGAUUCUACAAUCUGGCAUC
...................................((..............)..)..................................
..............(..(.................((..............)..).................)..).............
..............(..(..........(.(....((..............)..)....).)..........)..).............
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAPN01112677.1/27856-27944
GGCUGUGAAUCGGCUUAAUCUCAGCUGGCAACUGUGAGAUGCUAACCAAUUCUCCCACAGUGGCAUCUGGGAUUAUGCUAAACACAGCA
...................................((...............)..).................................
......................(...(........((...............)..)........)..).....................
......................(...(.(.(....((...............)..)....))..)..).....................
......................(...(.(.(....((...(.......)...)..)....))..)..).....................
>AAPY01560157.1/6445-6357
AAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGCAAUCACACACUUGCCCGUAGAGAUUCUACAGUCUGACAUC
...................................((..............)..)..................................
..............(..(.................((..............)..).................)..).............
..............(..(..........(.(....((..............)..)....).)..........)..).............
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAQR03052256.1/6761-6673
GAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAAUCACACACUUACCAGUAGAGAUUCUAUAGUCUGUCACC
...................................((..............)..)..................................
..............(..(.................((..............)..).................)..).............
..............(..(..........(.(....((..............)..)....).)..........)..).............
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAKN02040735.1/24209-24296
GAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAUCACACACUUACCUGUAAAGAUUCUGCAGUCUGACAGC
...................................((.............)..)..................................
..............(..(.................((.............)..).................)..).............
..............(..(..........(.(....((.............)..)....).)..........)..).............
..............(..(..........(.(....((...(......)..)..)....).)..........)..).............
>AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
...................................((..............)..)..................................
..............(..(.................((..............)..).................)..).............
..............(..(..........(.(....((..............)..)....).)..........)..).............
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAWZ02015727.1/100859-100771
GGCUGUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGAGCAGUUUCCAAAUCCUCUCACAGUGGUUUCUGGGAUUAUGCUAAACACAGCA
...................................((...............)..).................................
......................(...(........((...............)..)........)..).....................
......................(...(.(.(....((...............)..)....))..)..).....................
......................(...(.(.(....((...(.......)...)..)....))..)..).....................
>AACN010698325.1/574-662
AAGUGACAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCCGUAGAGAUUCUGCAGUCUGACAUC
...................................((..............)..)..................................
..............(..(.................((..............)..).................)..).............
..............(..(..........(.(....((..............)..)....).)..........)..).............
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAQQ01539574.1/518-430
AAGUGGCAGACUAGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAAUCACACACUUACCCGUAGAGAUUCUUUGGUCUGGCAGC
...................................((..............)..)..................................
..............(..(.................((..............)..).................)..).............
..............(..(..........(.(....((..............)..)....).)..........)..).............
..............(..(..........(.(....((...(......)...)..)....).)..........)..).............
>AAWZ02015728.1/1581-1492
AAGUCACAGACUGAGAAAUCUCUGCAGGCAAAUGUGAUGUCUUGACCAGCAAUCUCACAGUUACCAGCAGAGGUUCUGCAAUCUGGACUG
...................................(.(..............)..)..................................
..............(..(.................((...............)..).................)..).............
..............(..(..........(.(....((...............)..)....).)..........)..).............
..............(..(..........(.(....((...(.......)...)..)....).)..........)..).............
>CAAB02004893.1/247202-247115
GUUACGUUGACUGUUUAAUCUCUGCAGGCAACUGUGAUGGUGUUUUAUAUUCUCACAAUCACCUGGAGAGAUUCUGCAGUUUAUCUAA
...................................((.............)..)..................................
..............(..(.................((.............)..).................)..).............
..............(..(..........(.(....((.............)..)....).)..........)..).............
..............(..(..........(.(....((...(......)..)..)....).)..........)..).............
>AAVX01147466.1/944-1031
AAGCUACAGACUGGAUAAUCUCUGCAGGCAACUGUGAAGACCUGCCUCUAUCUCACAAUAGCCUCCAGAGGUUCUGUAGUCUGUGGCA
...................................((.............)..)..................................
..............(..(.................((.............)..).................)..).............
..............(..(..........(.(....((.............)..)....).)..........)..).............
..............(..(..........(.(....((...(.....)...)..)....).)..........)..).............
>AANN01395871.1/902-990
GGCUAUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGCGAUAUUCAUACAAUCCCCCACAGUGGUCUCUGGGAUUAUGCCAAACAAAGCA
.....................................((...........)..)...................................
......................(...(..........((...........)..)..........)..).....................
......................(...(.(.(......((...........)..)......))..)..).....................
>AAYZ01065394.1/6883-6795
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUAGUCUUCCAAUCCCUCACAGUGGUCUCUGGGGUUAUGCUAAACAGAGCA
.....................................((...........)..)...................................
......................(...(..........((...........)..)..........)..).....................
......................(...(.(.(......((...........)..)......))..)..).....................
>AAIY01552317.1/295-382
GGCUGUGGGCUGGCUUAAUCUCAGCUGGCAACUGUGAGCUGUUCGUGCAAUCCUCACAGUGGCCUCUGGGACUAUGCUACACAGAGCA
.................................((..................)..)...............................
......................(...(......((..................)..)......)..).....................
......................(...(.(.(..((..................)..)..))..)..).....................
>AAPN01112677.1/19396-19484
AAAUCGCAGACUGGGAAAUCUCUGCUGGCAAAUGUGGUGUCACGGUAGCAAUCGCACAAUUACCUGUAGAGAUUCUGCAAUCUGGCUUU
...................................((..............)..)..................................
..............(..(.................((..............)..).................)..).............
..............(..(..........(.(....((..............)..)....).)..........)..).............
>AAWR02003896.1/155482-155568
GGCUGUGAGUUGGUUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUAAAUCCCCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
...................................((............)..)..................................
......................(...(..........((..........)..).........)..).....................
......................(...(.(.(......((..........)..).....))..)..).....................
>CAAE01014563.1/1138009-1137922
UUUAGGUUGACUGUUUAAUCUCUGCAGGCAACUGUGAUGGUGAUUUUUAUUCUCACAAUCACCUGGAGAGAUUCUGCAGUUUAUUUAA
.................................(..(...............)..)................................
.............(..(................(..(...............)..)...............)...)............
.............(..(...........(.(..(..(...............)..)...))..........)...)............
>AY866221.1/470-558
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUCCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
.....................................((...........)..)...................................
......................(...(..........((...........)..)..........)..).....................
......................(...(.(.(......((...........)..)......))..)..).....................
>AAQR03052253.1/13725-13637
GGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUUCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
.................................((...................)..)...............................
......................(...(......((...................)..)......)..).....................
>AAHX01081871.1/22293-22381
AGCUAUGAGUUAGUUUAAUCUCAGCUGGCAACUGUGAGAUGUCCCUAUCAUUCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
.................................((...................)..)...............................
......................(...(......((...................)..)......)..).....................
>AAIY01782907.1/856-772
AAGUGGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGACGUUGCUGCCGAAAUCACACACUUGCCCGUAGAGAUGCUGCAGUCUGA
...................................((..............)..)..............................
.......(..(........................(..(............)..)........................)..)..
>AALT01617626.1/3023-3113
AGCUAUGAGUUGGUUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUUCCCCCCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCA
...................................((..............)..)....................................
......................(...(...........((...........)..)...........)..).....................
>AANH01011241.1/47022-46939
AGCUGUGAUCCAGUUUAAUCUCAGCUGGCAACUGUGAGCUUUGAUCGCCUCACAGAGCCAACUAAGAUUCACCUGAACGCAACA
......................................((....)..)....................................
>AAVX01063793.1/485-397
UGCCAUGAACUGGCUUAAUCUCAGCUGGCAACUGUGAGUGUUUAAUGGUUUCCCCCACAGUGGUUGCUGGGAUUAUGCUAAACACAGCA
.....................................((...........)..)...................................
>BX321898.29/72434-72349
UAUAAACUGACUGGGUAAUCUCUGCAGGCAACUGUGAUGUGAUUACAGUCUCACAUUGACCUGAAGAGGUUGAGCAGUCUGUUUAC
.................................((...............)..)................................
>BAAE01230816.1/685-599
CAAAGGCUGACUGGGUAAUCUCUGCAGGCAACUGUGAUGGUGAUUUCAUUCUCACAAUCACCUGGAGAGAUUUUGCAGUUUGUCUAA
.................................(..(..............)..)................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 ((U)CN)C < 0.001 24.7
AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
.........1.........2.........3.........4.........5.........6.........7.........8.........
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
2 (.NN.().UC.) < 0.001 3.52
AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
.........1.........2.........3.........4.........5.........6.........7.........8.........
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3 C(A(A)) < 0.001 5.34
AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
.........1.........2.........3.........4.........5.........6.........7.........8.........
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
4 (.YUNNN.) < 0.001 3.3
AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
.........1.........2.........3.........4.........5.........6.........7.........8.........
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 ((U)CN)Y < 0.001 11.2
AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
.........1.........2.........3.........4.........5.........6.........7.........8.........
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
2 Y(Y(N)()) (URB) < 0.001 0.00136
3 C(A(A)) < 0.001 5.34
AAFR03002982.1/16332-16244
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
GAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUC
.........1.........2.........3.........4.........5.........6.........7.........8.........
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
4 (GGAGY) 1 41.1
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).