D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-720   (Rfam: RF02002)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
((R)UU)R
(()YUU)
(NNUY)
R(NNN)U
97.1
88.6
97.1
100.0
(()YUU)
(NNUY)
R(NNN)U

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.8 %
(± 0.119 %)
Decision tree:

5-fold cross-validation: 82.8 %
(± 7.23 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 88.7 %
(± 5.07 %)
of ABGA01294983.1/3821-3713
ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
..((((((((..((((((..(((((((((((((((((((((((...))))))))))))))))..))))))))))))))))...)))))(((((..)))))(.(....))
...................................................................................................1.........
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789

abstract shape: (()())()

Number of sequences
Structure ORBs (out of 35) (%)
1 ((R)UU)R
 31 88.6
>ABGA01129425.1/2093-2200
CUGGCUCUUGCCUGGUGGCGUUAAUUCUCGCUGGGGCCUCCAAAUUGUUGUACUUGAGCGAGUUAGUAAAAUGCCACAAUUUGAGACGAAUUAAGAGUCCUUUAUUAG
.........................((..................................)..)...........................................
>AC069528.10/33954-34060
CCGGCUCUUGCCCGGUGGCAUUAAUAUCUCACUGGGGCCCCCAAAUGUUGUACUUGAGUGAGUUAGAGAAAACGCCACACUUUGAGAUGAAUUGAGAGACCAUUUAG
..........................((.................................)..)..........................................
>AC007275.4/120766-120657
CCGGCUCUCACCCAGUGGAGUUAAUUUCUCACUGGGACCUCCAUUAUGUUGUAUCCAAGCGAGUUAAAAAAUAUGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAA
........................................((.....)..)...........................................................
>CABD02204725.1/179-289
CCGGCUCUCGCCCGGUGGCGUUAAUAUAUCUCGCUAAGGCAUCCAAAAUGUUGUACCCGAGCGAGUUAGAAAAACACCACACUUUGAGAUGAAUUAAGAAUCCUUUAUUAG
.........................................((......)..)..........................................................
>ABGA01257724.1/20402-20295
CCAGCUCUAGCCCGGUGGCGUUAAAAUCUCGCUGGGGCCUCCAACUGUUGUAGCCAAGCGAGUUAGAAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
..........................((.................................)..)...........................................
>ABGA01359290.1/9723-9616
CCGGCUCUCGCCUGGUGGUGUAAUAUCUCGCUGGGGCCUGCAAAUUGUUGUACCCAAGCGAGUUAGGAAAACAUCACACUUUGAGAUGAAUUAAGAGUUCUUUAUUAG
...............................................................................((......................)..).
>AC147686.2/145351-145244
CCAGCUCUCACCUGGUGGUGUUAAAAUCUCACUAGGGCUUCCAAAUAUUGUACCCGAGCGAGUUAGAAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
..........................((.................................)..)...........................................
>AB019440.1/26121-26011
CCGGCUCUCGCCCAGUGGUGUUAAUAUCUCGCUGCGGCCUCCAAAAAUGUUGUACCCAGGCGAGUUAGAGAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAA
..........................((...................................)..)............................................
>CABD02255006.1/1471-1579
CCGGCUCUCGCCCGGUGGCAUUAAUAUCUCGCUGGGGCCUCCAAAUGUUGUACUUGAGUGAGUUAGAGAAAAUGCCACACUUUGGGAUGAAUUGAGAGUCCAUUUAUUU
..........................((.................................)..)............................................
>CABD02255003.1/421-529
CCGGCUCUCGCCCAGUGGCGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCAAGUUAGAAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
..........................(.(.................................)..)...........................................
>ABGA01180729.1/3274-3170
CCGGCUCUCGCCCGGUGGCGUUUCUCGCUGGGGCCUCCAAAUGUUGUACCUGAGCAAGUUAGAGAAAACGCCACAUUUUGAGACGAAUUAAGAGUCCAUUUAUUU
..........................((.............................)..)............................................
>AADA01012176.1/2789-2898
CCAGCUCUUGCCAGGUGGCGUUAAUAUCUCGCUGGGGCCUCCAUUAUGUUGUACCCAGGCAAGUUAGAGAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUCAUUAG
............................((................................)..)............................................
>ABGA01027034.1/20707-20814
CCGGCUCUCACCCAGUGGCGUUAAUAUCUCGCUGGGGCCUCUAAAUGUUGUACCUGAGCGAGUUAGAAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
..........................((.................................)..)...........................................
>CABD02176300.1/657-550
CCGGCUCUCACCUGGUGGGGAAUAUAUCUCGCUGGGUCCUCCAAAUGUUAUACCCGAGCGAGUUAGAAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUUA
..........................((.................................)..)...........................................
>AADA01114695.1/7907-7799
CCAGCUCUCACCCAGUGGUGAAUAUCUCGCUGGGGCCUCCAAAUGUUGUAACCAAGCGAGUUAUGGAGAAACGCUACACUUUGAGAUUAAUUGAGGAGUCCUUUAUUAG
...................................((.......)..).............................................................
>AADA01282684.1/2456-2346
CCGGCUCUCGCCUGGUGGCGUUAAUAUAUCUCGCUGGGGCAUCCAAAAUGUUGUACCCGAGCGAGUUAGAAAAACAACACACUUUGAGACGAAUUAAGAAUCCUUUAUUAG
.........................................((......)..)..........................................................
>AADA01310105.1/12098-11989
CCAGCUCUCGCCCGGUGGUGUUAAUAUCUCACUGGGGCCUCCAAAAUGUUGUACCCAGACGAGUUAGAGAAAAUGCCACAAUUUGAGACAAAUUAAGAGUCCUUUAUUAG
..........................((..................................)..)............................................
>ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
.......((.................................)..)...............................................................
>AADA01185238.1/8-116
CCGGCUCUCGCCCCGUGACGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCGAGUUAGAAAAACGCCACACUCUGAGACGAAUUAAGAGUCCUUCAUUAG
..........................(.(.................................)..)...........................................
>AC134698.10/151598-151704
CCGGCUCUUGCCCAGUGGCGAAUAUCUCACUGGGGCCUCCAAAUGUUGUGACCAAGCGAGUUAUAGAGAAACGCCACACUUUGAGACAAAUUAGAGUCCUUUAUUAG
........................((.................................)..)............................................
>ABGA01344024.1/2670-2561
CCGGCUCUUGCCCGGUGGUGGUAAUAUCUUGCUGGGGCCUCCAUUAUGUUGUAUCCAGGCAAGUUAGAGAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
..........................((..................................)..)............................................
>BS000634.2/34830-34722
CCAGCUCUCACCUGGUGGCAGAUAUCUCGCUGGGGUCUCCAAAUAUUGUAACCAAGUGAGUUAUAGAGAAACGCCACACUUUGAGACUAAUUAAAGAGACCUUUAUUAG
..........................................................................................((............)..).
>ABGA01302017.1/6636-6528
CCGGCUCUCGCCCAGUGGCGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCGAGUUAGAUAAACGCCACACUUUGAGACAAAUUAAGAGUCCUUUAUUAG
..........................(.(.................................)..)...........................................
>AACZ03099708.1/18269-18161
CCAACUCUCACCCAGUGGCAUUAAUUUCUCGCUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
..........................((.................................)..)............................................
>ABGA01067312.1/1557-1448
CCGGCUCUCACCCGGUGGUGUUAAUAUCUUGCUGGGGCCUCCAGAAUGUUUUGCCCAGGGGUGUUAGAGAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCCUUAUUAG
............................................................................................((...........)..).
>AACZ03022234.1/71930-72038
CGGAUCUCACCCGGUGGUGUUAAUAUCUCGCUGGGGCCUCCAAAAUGUUGUGCCCAGGGGUGUUAGAGAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
.................................................((..........)..)............................................
>AC117411.3/45749-45640
CCGGAUCUCACACGGUGGUGUUAAUAUCUCGCUGGGGCCUCCAAAAUGUUGUGCCCAGGGGUGUUAGAGAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
..................................................((..........)..)............................................
>ABGA01375608.1/6340-6450
GCGGCUCUUGCCCAGUGGGGUUAAUAUAUCUCGCUGGGGCCUCCAAAUUGUUGUACCCAAGCGAGUUAGAAAAAUGCCACACUUUGAGAUGAACUAAGUGUCCUUUAUUAG
............................((..................................)..)...........................................
>CABD02255003.1/7042-7150
CCGGAUCUCCCCGGUGGUGUUAAUAUCUCGCUGGGGCCUCCAAAAUGUUGUACCCAGGGGUGUUAGAGAAAACACUGCACUUUGAGAUAAAUUAAGAGUCGUUUAUUAG
.....((......................................................)..)............................................
>ABGA01295423.1/8067-7958
CUGGCUCUCACUUGGUGGUGUUAAUAUCUCACUGGCACCUCCAAAAUGUUGUACCCAGAUGAGUUAGAGAAAAUGCCACACUUUGAGAUGAAUCAAGAGUCCUUUAUUAG
..........................((..................................)..)............................................
>ABGA01106235.1/2438-2546
CCGGCUCUUGCCUGGUGGUGUUAAUAUCUCACUGGGGCCUCCAAAUAUUGUACCUGAGUGAGUUAGAGAAAACAACACACUUUGAGAUGAAUUAAGAUUCUGUUUAUUU
..........................((.................................)..)............................................
2 ((R)UU)R
(()YUU)
 22 62.9
>AC007275.4/120766-120657
CCGGCUCUCACCCAGUGGAGUUAAUUUCUCACUGGGACCUCCAUUAUGUUGUAUCCAAGCGAGUUAAAAAAUAUGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAA
.........(...(..........................((.....)..)............................)...)..........................
>CABD02176300.1/657-550
CCGGCUCUCACCUGGUGGGGAAUAUAUCUCGCUGGGUCCUCCAAAUGUUAUACCCGAGCGAGUUAGAAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUUA
.........(...(............((.................................)..)............)...)..........................
>AC134698.10/151598-151704
CCGGCUCUUGCCCAGUGGCGAAUAUCUCACUGGGGCCUCCAAAUGUUGUGACCAAGCGAGUUAUAGAGAAACGCCACACUUUGAGACAAAUUAGAGUCCUUUAUUAG
......((................((.................................)..)...............)...)........................
>ABGA01027034.1/20707-20814
CCGGCUCUCACCCAGUGGCGUUAAUAUCUCGCUGGGGCCUCUAAAUGUUGUACCUGAGCGAGUUAGAAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
((........................((.................................)..).............)...).........................
>ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
......((..................((.................................)..)..............)...).........................
>AADA01310105.1/12098-11989
CCAGCUCUCGCCCGGUGGUGUUAAUAUCUCACUGGGGCCUCCAAAAUGUUGUACCCAGACGAGUUAGAGAAAAUGCCACAAUUUGAGACAAAUUAAGAGUCCUUUAUUAG
......((..................((..................................)..)..............)...).........................
>AACZ03099708.1/18269-18161
CCAACUCUCACCCAGUGGCAUUAAUUUCUCGCUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
........(...(.............((.................................)..)..............)...).........................
>ABGA01129425.1/2093-2200
CUGGCUCUUGCCUGGUGGCGUUAAUUCUCGCUGGGGCCUCCAAAUUGUUGUACUUGAGCGAGUUAGUAAAAUGCCACAAUUUGAGACGAAUUAAGAGUCCUUUAUUAG
......((.................((..................................)..).............)...).........................
>AC069528.10/33954-34060
CCGGCUCUUGCCCGGUGGCAUUAAUAUCUCACUGGGGCCCCCAAAUGUUGUACUUGAGUGAGUUAGAGAAAACGCCACACUUUGAGAUGAAUUGAGAGACCAUUUAG
......((..................((.................................)..)..............)...).......................
>ABGA01375608.1/6340-6450
GCGGCUCUUGCCCAGUGGGGUUAAUAUAUCUCGCUGGGGCCUCCAAAUUGUUGUACCCAAGCGAGUUAGAAAAAUGCCACACUUUGAGAUGAACUAAGUGUCCUUUAUUAG
......((....................((..................................)..).............)...).........................
>AB019440.1/26121-26011
CCGGCUCUCGCCCAGUGGUGUUAAUAUCUCGCUGCGGCCUCCAAAAAUGUUGUACCCAGGCGAGUUAGAGAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAA
......((..................((...................................)..)..............)...).........................
>ABGA01257724.1/20402-20295
CCAGCUCUAGCCCGGUGGCGUUAAAAUCUCGCUGGGGCCUCCAACUGUUGUAGCCAAGCGAGUUAGAAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
......((..................((.................................)..).............)...).........................
>AADA01012176.1/2789-2898
CCAGCUCUUGCCAGGUGGCGUUAAUAUCUCGCUGGGGCCUCCAUUAUGUUGUACCCAGGCAAGUUAGAGAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUCAUUAG
......(..(..................((................................)..)..............)...).........................
>CABD02204725.1/179-289
CCGGCUCUCGCCCGGUGGCGUUAAUAUAUCUCGCUAAGGCAUCCAAAAUGUUGUACCCGAGCGAGUUAGAAAAACACCACACUUUGAGAUGAAUUAAGAAUCCUUUAUUAG
............((...........................((......)..)...........................)...)..........................
>ABGA01302017.1/6636-6528
CCGGCUCUCGCCCAGUGGCGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCGAGUUAGAUAAACGCCACACUUUGAGACAAAUUAAGAGUCCUUUAUUAG
......((..................(.(.................................)..).............)...).........................
>CABD02255003.1/421-529
CCGGCUCUCGCCCAGUGGCGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCAAGUUAGAAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
......((..................(.(.................................)..).............)...).........................
>ABGA01344024.1/2670-2561
CCGGCUCUUGCCCGGUGGUGGUAAUAUCUUGCUGGGGCCUCCAUUAUGUUGUAUCCAGGCAAGUUAGAGAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
...........((.............((..................................)..)..............)...).........................
>ABGA01180729.1/3274-3170
CCGGCUCUCGCCCGGUGGCGUUUCUCGCUGGGGCCUCCAAAUGUUGUACCUGAGCAAGUUAGAGAAAACGCCACAUUUUGAGACGAAUUAAGAGUCCAUUUAUUU
......((..................((.............................)..)..............)...).........................
>CABD02255006.1/1471-1579
CCGGCUCUCGCCCGGUGGCAUUAAUAUCUCGCUGGGGCCUCCAAAUGUUGUACUUGAGUGAGUUAGAGAAAAUGCCACACUUUGGGAUGAAUUGAGAGUCCAUUUAUUU
(.(.......................((.................................)..)..............)...).........................
>ABGA01106235.1/2438-2546
CCGGCUCUUGCCUGGUGGUGUUAAUAUCUCACUGGGGCCUCCAAAUAUUGUACCUGAGUGAGUUAGAGAAAACAACACACUUUGAGAUGAAUUAAGAUUCUGUUUAUUU
......((..................((.................................)..)..............)...).........................
>AADA01282684.1/2456-2346
CCGGCUCUCGCCUGGUGGCGUUAAUAUAUCUCGCUGGGGCAUCCAAAAUGUUGUACCCGAGCGAGUUAGAAAAACAACACACUUUGAGACGAAUUAAGAAUCCUUUAUUAG
............((...........................((......)..)...........................)...)..........................
>AC147686.2/145351-145244
CCAGCUCUCACCUGGUGGUGUUAAAAUCUCACUAGGGCUUCCAAAUAUUGUACCCGAGCGAGUUAGAAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
......((..................((.................................)..).............)...).........................
3 ((R)UU)R
(()YUU)
(NNUY)
 17 48.6
>ABGA01375608.1/6340-6450
GCGGCUCUUGCCCAGUGGGGUUAAUAUAUCUCGCUGGGGCCUCCAAAUUGUUGUACCCAAGCGAGUUAGAAAAAUGCCACACUUUGAGAUGAACUAAGUGUCCUUUAUUAG
......((....................((..................................)..).............)...)...........(....)........
>AACZ03099708.1/18269-18161
CCAACUCUCACCCAGUGGCAUUAAUUUCUCGCUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
........(...(.............((.................................)..)..............)...)...........(....)........
>ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
......((..................((.................................)..)..............)...)...........(....)........
>CABD02204725.1/179-289
CCGGCUCUCGCCCGGUGGCGUUAAUAUAUCUCGCUAAGGCAUCCAAAAUGUUGUACCCGAGCGAGUUAGAAAAACACCACACUUUGAGAUGAAUUAAGAAUCCUUUAUUAG
............((...........................((......)..)............................)...)...........(....)........
>CABD02255003.1/421-529
CCGGCUCUCGCCCAGUGGCGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCAAGUUAGAAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
((........................(.(.................................)..).............)...)...........(....)........
>ABGA01302017.1/6636-6528
CCGGCUCUCGCCCAGUGGCGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCGAGUUAGAUAAACGCCACACUUUGAGACAAAUUAAGAGUCCUUUAUUAG
((........................(.(.................................)..).............)...)...........(....)........
>AADA01310105.1/12098-11989
CCAGCUCUCGCCCGGUGGUGUUAAUAUCUCACUGGGGCCUCCAAAAUGUUGUACCCAGACGAGUUAGAGAAAAUGCCACAAUUUGAGACAAAUUAAGAGUCCUUUAUUAG
......((..................((..................................)..)..............)...)...........(....)........
>ABGA01129425.1/2093-2200
CUGGCUCUUGCCUGGUGGCGUUAAUUCUCGCUGGGGCCUCCAAAUUGUUGUACUUGAGCGAGUUAGUAAAAUGCCACAAUUUGAGACGAAUUAAGAGUCCUUUAUUAG
......((.................((..................................)..).............)...)...........(....)........
>ABGA01027034.1/20707-20814
CCGGCUCUCACCCAGUGGCGUUAAUAUCUCGCUGGGGCCUCUAAAUGUUGUACCUGAGCGAGUUAGAAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
((........................((.................................)..).............)...)...........(....)........
>ABGA01180729.1/3274-3170
CCGGCUCUCGCCCGGUGGCGUUUCUCGCUGGGGCCUCCAAAUGUUGUACCUGAGCAAGUUAGAGAAAACGCCACAUUUUGAGACGAAUUAAGAGUCCAUUUAUUU
......((..................((.............................)..)..............)...)...........(....)........
>CABD02176300.1/657-550
CCGGCUCUCACCUGGUGGGGAAUAUAUCUCGCUGGGUCCUCCAAAUGUUAUACCCGAGCGAGUUAGAAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUUA
.........(...(............((.................................)..)............)...)............(....)........
>ABGA01257724.1/20402-20295
CCAGCUCUAGCCCGGUGGCGUUAAAAUCUCGCUGGGGCCUCCAACUGUUGUAGCCAAGCGAGUUAGAAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
......((..................((.................................)..).............)...)...........(....)........
>ABGA01344024.1/2670-2561
CCGGCUCUUGCCCGGUGGUGGUAAUAUCUUGCUGGGGCCUCCAUUAUGUUGUAUCCAGGCAAGUUAGAGAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
............((............((..................................)..)..............)...)...........(....)........
>AADA01282684.1/2456-2346
CCGGCUCUCGCCUGGUGGCGUUAAUAUAUCUCGCUGGGGCAUCCAAAAUGUUGUACCCGAGCGAGUUAGAAAAACAACACACUUUGAGACGAAUUAAGAAUCCUUUAUUAG
............((...........................((......)..)...........................)...)............(....)........
>AB019440.1/26121-26011
CCGGCUCUCGCCCAGUGGUGUUAAUAUCUCGCUGCGGCCUCCAAAAAUGUUGUACCCAGGCGAGUUAGAGAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAA
......((..................((...................................)..)..............)...)...........(....)........
>AC147686.2/145351-145244
CCAGCUCUCACCUGGUGGUGUUAAAAUCUCACUAGGGCUUCCAAAUAUUGUACCCGAGCGAGUUAGAAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
......((..................((.................................)..).............)...)...........(....)........
>AADA01012176.1/2789-2898
CCAGCUCUUGCCAGGUGGCGUUAAUAUCUCGCUGGGGCCUCCAUUAUGUUGUACCCAGGCAAGUUAGAGAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUCAUUAG
......(..(..................((................................)..)..............)...)...........(....)........
4 ((R)UU)R
(()YUU)
(NNUY)
R(NNN)U
 13 37.1
>AACZ03099708.1/18269-18161
CCAACUCUCACCCAGUGGCAUUAAUUUCUCGCUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
........(...(.............((..............(...)..............)..)..............)...)...........(....)........
>ABGA01302017.1/6636-6528
CCGGCUCUCGCCCAGUGGCGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCGAGUUAGAUAAACGCCACACUUUGAGACAAAUUAAGAGUCCUUUAUUAG
((........................(.(...............(...).............)..).............)...)...........(....)........
>ABGA01375608.1/6340-6450
GCGGCUCUUGCCCAGUGGGGUUAAUAUAUCUCGCUGGGGCCUCCAAAUUGUUGUACCCAAGCGAGUUAGAAAAAUGCCACACUUUGAGAUGAACUAAGUGUCCUUUAUUAG
......((....................((..............(...)...............)..).............)...)...........(....)........
>CABD02255003.1/421-529
CCGGCUCUCGCCCAGUGGCGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCAAGUUAGAAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
((........................(.(...............(...).............)..).............)...)...........(....)........
>ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
......((..................((..............(...)..............)..)..............)...)...........(....)........
>AADA01310105.1/12098-11989
CCAGCUCUCGCCCGGUGGUGUUAAUAUCUCACUGGGGCCUCCAAAAUGUUGUACCCAGACGAGUUAGAGAAAAUGCCACAAUUUGAGACAAAUUAAGAGUCCUUUAUUAG
......((..................((..............(...)...............)..)..............)...)...........(....)........
>AADA01012176.1/2789-2898
CCAGCUCUUGCCAGGUGGCGUUAAUAUCUCGCUGGGGCCUCCAUUAUGUUGUACCCAGGCAAGUUAGAGAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUCAUUAG
......(..(..................((............(...)...............)..)..............)...)...........(....)........
>ABGA01180729.1/3274-3170
CCGGCUCUCGCCCGGUGGCGUUUCUCGCUGGGGCCUCCAAAUGUUGUACCUGAGCAAGUUAGAGAAAACGCCACAUUUUGAGACGAAUUAAGAGUCCAUUUAUUU
......((..................((...........(...).............)..)..............)...)...........(....)........
>ABGA01129425.1/2093-2200
CUGGCUCUUGCCUGGUGGCGUUAAUUCUCGCUGGGGCCUCCAAAUUGUUGUACUUGAGCGAGUUAGUAAAAUGCCACAAUUUGAGACGAAUUAAGAGUCCUUUAUUAG
......((.................((..............(...)...............)..).............)...)...........(....)........
>ABGA01344024.1/2670-2561
CCGGCUCUUGCCCGGUGGUGGUAAUAUCUUGCUGGGGCCUCCAUUAUGUUGUAUCCAGGCAAGUUAGAGAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
............((............((..............(...)...............)..)..............)...)...........(....)........
>ABGA01257724.1/20402-20295
CCAGCUCUAGCCCGGUGGCGUUAAAAUCUCGCUGGGGCCUCCAACUGUUGUAGCCAAGCGAGUUAGAAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
......((..................((...............(...).............)..).............)...)...........(....)........
>ABGA01027034.1/20707-20814
CCGGCUCUCACCCAGUGGCGUUAAUAUCUCGCUGGGGCCUCUAAAUGUUGUACCUGAGCGAGUUAGAAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
((........................((...............(...).............)..).............)...)...........(....)........
>AC147686.2/145351-145244
CCAGCUCUCACCUGGUGGUGUUAAAAUCUCACUAGGGCUUCCAAAUAUUGUACCCGAGCGAGUUAGAAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
......((..................((...............(...).............)..).............)...)...........(....)........

>ABGA01129425.1/2093-2200
CUGGCUCUUGCCUGGUGGCGUUAAUUCUCGCUGGGGCCUCCAAAUUGUUGUACUUGAGCGAGUUAGUAAAAUGCCACAAUUUGAGACGAAUUAAGAGUCCUUUAUUAG
.........................((..................................)..)...........................................
......((.................((..................................)..).............)...).........................
......((.................((..................................)..).............)...)...........(....)........
......((.................((..............(...)...............)..).............)...)...........(....)........
>ABGA01257724.1/20402-20295
CCAGCUCUAGCCCGGUGGCGUUAAAAUCUCGCUGGGGCCUCCAACUGUUGUAGCCAAGCGAGUUAGAAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
..........................((.................................)..)...........................................
......((..................((.................................)..).............)...).........................
......((..................((.................................)..).............)...)...........(....)........
......((..................((...............(...).............)..).............)...)...........(....)........
>AC147686.2/145351-145244
CCAGCUCUCACCUGGUGGUGUUAAAAUCUCACUAGGGCUUCCAAAUAUUGUACCCGAGCGAGUUAGAAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
..........................((.................................)..)...........................................
......((..................((.................................)..).............)...).........................
......((..................((.................................)..).............)...)...........(....)........
......((..................((...............(...).............)..).............)...)...........(....)........
>CABD02255003.1/421-529
CCGGCUCUCGCCCAGUGGCGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCAAGUUAGAAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
..........................(.(.................................)..)...........................................
......((..................(.(.................................)..).............)...).........................
((........................(.(.................................)..).............)...)...........(....)........
((........................(.(...............(...).............)..).............)...)...........(....)........
>ABGA01180729.1/3274-3170
CCGGCUCUCGCCCGGUGGCGUUUCUCGCUGGGGCCUCCAAAUGUUGUACCUGAGCAAGUUAGAGAAAACGCCACAUUUUGAGACGAAUUAAGAGUCCAUUUAUUU
..........................((.............................)..)............................................
......((..................((.............................)..)..............)...).........................
......((..................((.............................)..)..............)...)...........(....)........
......((..................((...........(...).............)..)..............)...)...........(....)........
>AADA01012176.1/2789-2898
CCAGCUCUUGCCAGGUGGCGUUAAUAUCUCGCUGGGGCCUCCAUUAUGUUGUACCCAGGCAAGUUAGAGAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUCAUUAG
............................((................................)..)............................................
......(..(..................((................................)..)..............)...).........................
......(..(..................((................................)..)..............)...)...........(....)........
......(..(..................((............(...)...............)..)..............)...)...........(....)........
>ABGA01027034.1/20707-20814
CCGGCUCUCACCCAGUGGCGUUAAUAUCUCGCUGGGGCCUCUAAAUGUUGUACCUGAGCGAGUUAGAAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
..........................((.................................)..)...........................................
((........................((.................................)..).............)...).........................
((........................((.................................)..).............)...)...........(....)........
((........................((...............(...).............)..).............)...)...........(....)........
>AADA01310105.1/12098-11989
CCAGCUCUCGCCCGGUGGUGUUAAUAUCUCACUGGGGCCUCCAAAAUGUUGUACCCAGACGAGUUAGAGAAAAUGCCACAAUUUGAGACAAAUUAAGAGUCCUUUAUUAG
..........................((..................................)..)............................................
......((..................((..................................)..)..............)...).........................
......((..................((..................................)..)..............)...)...........(....)........
......((..................((..............(...)...............)..)..............)...)...........(....)........
>ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
.......((.................................)..)...............................................................
......((..................((.................................)..)..............)...).........................
......((..................((.................................)..)..............)...)...........(....)........
......((..................((..............(...)..............)..)..............)...)...........(....)........
>ABGA01344024.1/2670-2561
CCGGCUCUUGCCCGGUGGUGGUAAUAUCUUGCUGGGGCCUCCAUUAUGUUGUAUCCAGGCAAGUUAGAGAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
..........................((..................................)..)............................................
...........((.............((..................................)..)..............)...).........................
............((............((..................................)..)..............)...)...........(....)........
............((............((..............(...)...............)..)..............)...)...........(....)........
>ABGA01302017.1/6636-6528
CCGGCUCUCGCCCAGUGGCGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCGAGUUAGAUAAACGCCACACUUUGAGACAAAUUAAGAGUCCUUUAUUAG
..........................(.(.................................)..)...........................................
......((..................(.(.................................)..).............)...).........................
((........................(.(.................................)..).............)...)...........(....)........
((........................(.(...............(...).............)..).............)...)...........(....)........
>AACZ03099708.1/18269-18161
CCAACUCUCACCCAGUGGCAUUAAUUUCUCGCUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAG
..........................((.................................)..)............................................
........(...(.............((.................................)..)..............)...).........................
........(...(.............((.................................)..)..............)...)...........(....)........
........(...(.............((..............(...)..............)..)..............)...)...........(....)........
>ABGA01375608.1/6340-6450
GCGGCUCUUGCCCAGUGGGGUUAAUAUAUCUCGCUGGGGCCUCCAAAUUGUUGUACCCAAGCGAGUUAGAAAAAUGCCACACUUUGAGAUGAACUAAGUGUCCUUUAUUAG
............................((..................................)..)...........................................
......((....................((..................................)..).............)...).........................
......((....................((..................................)..).............)...)...........(....)........
......((....................((..............(...)...............)..).............)...)...........(....)........
>CABD02204725.1/179-289
CCGGCUCUCGCCCGGUGGCGUUAAUAUAUCUCGCUAAGGCAUCCAAAAUGUUGUACCCGAGCGAGUUAGAAAAACACCACACUUUGAGAUGAAUUAAGAAUCCUUUAUUAG
.........................................((......)..)..........................................................
............((...........................((......)..)...........................)...)..........................
............((...........................((......)..)............................)...)...........(....)........
>AB019440.1/26121-26011
CCGGCUCUCGCCCAGUGGUGUUAAUAUCUCGCUGCGGCCUCCAAAAAUGUUGUACCCAGGCGAGUUAGAGAAAACGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAA
..........................((...................................)..)............................................
......((..................((...................................)..)..............)...).........................
......((..................((...................................)..)..............)...)...........(....)........
>CABD02176300.1/657-550
CCGGCUCUCACCUGGUGGGGAAUAUAUCUCGCUGGGUCCUCCAAAUGUUAUACCCGAGCGAGUUAGAAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUUA
..........................((.................................)..)...........................................
.........(...(............((.................................)..)............)...)..........................
.........(...(............((.................................)..)............)...)............(....)........
>AADA01282684.1/2456-2346
CCGGCUCUCGCCUGGUGGCGUUAAUAUAUCUCGCUGGGGCAUCCAAAAUGUUGUACCCGAGCGAGUUAGAAAAACAACACACUUUGAGACGAAUUAAGAAUCCUUUAUUAG
.........................................((......)..)..........................................................
............((...........................((......)..)...........................)...)..........................
............((...........................((......)..)...........................)...)............(....)........
>AC069528.10/33954-34060
CCGGCUCUUGCCCGGUGGCAUUAAUAUCUCACUGGGGCCCCCAAAUGUUGUACUUGAGUGAGUUAGAGAAAACGCCACACUUUGAGAUGAAUUGAGAGACCAUUUAG
..........................((.................................)..)..........................................
......((..................((.................................)..)..............)...).......................
>AC007275.4/120766-120657
CCGGCUCUCACCCAGUGGAGUUAAUUUCUCACUGGGACCUCCAUUAUGUUGUAUCCAAGCGAGUUAAAAAAUAUGCCACACUUUGAGACGAAUUAAGAGUCCUUUAUUAA
........................................((.....)..)...........................................................
.........(...(..........................((.....)..)............................)...)..........................
>CABD02255006.1/1471-1579
CCGGCUCUCGCCCGGUGGCAUUAAUAUCUCGCUGGGGCCUCCAAAUGUUGUACUUGAGUGAGUUAGAGAAAAUGCCACACUUUGGGAUGAAUUGAGAGUCCAUUUAUUU
..........................((.................................)..)............................................
(.(.......................((.................................)..)..............)...).........................
>AC134698.10/151598-151704
CCGGCUCUUGCCCAGUGGCGAAUAUCUCACUGGGGCCUCCAAAUGUUGUGACCAAGCGAGUUAUAGAGAAACGCCACACUUUGAGACAAAUUAGAGUCCUUUAUUAG
........................((.................................)..)............................................
......((................((.................................)..)...............)...)........................
>ABGA01106235.1/2438-2546
CCGGCUCUUGCCUGGUGGUGUUAAUAUCUCACUGGGGCCUCCAAAUAUUGUACCUGAGUGAGUUAGAGAAAACAACACACUUUGAGAUGAAUUAAGAUUCUGUUUAUUU
..........................((.................................)..)............................................
......((..................((.................................)..)..............)...).........................
>ABGA01359290.1/9723-9616
CCGGCUCUCGCCUGGUGGUGUAAUAUCUCGCUGGGGCCUGCAAAUUGUUGUACCCAAGCGAGUUAGGAAAACAUCACACUUUGAGAUGAAUUAAGAGUUCUUUAUUAG
...............................................................................((......................)..).
>AADA01114695.1/7907-7799
CCAGCUCUCACCCAGUGGUGAAUAUCUCGCUGGGGCCUCCAAAUGUUGUAACCAAGCGAGUUAUGGAGAAACGCUACACUUUGAGAUUAAUUGAGGAGUCCUUUAUUAG
...................................((.......)..).............................................................
>AADA01185238.1/8-116
CCGGCUCUCGCCCCGUGACGUUAAAAUUCUCGCUGGGGCCUCCAAAUGUUGUACCCGAGCGAGUUAGAAAAACGCCACACUCUGAGACGAAUUAAGAGUCCUUCAUUAG
..........................(.(.................................)..)...........................................
>BS000634.2/34830-34722
CCAGCUCUCACCUGGUGGCAGAUAUCUCGCUGGGGUCUCCAAAUAUUGUAACCAAGUGAGUUAUAGAGAAACGCCACACUUUGAGACUAAUUAAAGAGACCUUUAUUAG
..........................................................................................((............)..).
>ABGA01067312.1/1557-1448
CCGGCUCUCACCCGGUGGUGUUAAUAUCUUGCUGGGGCCUCCAGAAUGUUUUGCCCAGGGGUGUUAGAGAAAACGCCACACUUUGAGAUGAAUUAAGAGUCCCUUAUUAG
............................................................................................((...........)..).
>AACZ03022234.1/71930-72038
CGGAUCUCACCCGGUGGUGUUAAUAUCUCGCUGGGGCCUCCAAAAUGUUGUGCCCAGGGGUGUUAGAGAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
.................................................((..........)..)............................................
>AC117411.3/45749-45640
CCGGAUCUCACACGGUGGUGUUAAUAUCUCGCUGGGGCCUCCAAAAUGUUGUGCCCAGGGGUGUUAGAGAAAACACCACACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
..................................................((..........)..)............................................
>CABD02255003.1/7042-7150
CCGGAUCUCCCCGGUGGUGUUAAUAUCUCGCUGGGGCCUCCAAAAUGUUGUACCCAGGGGUGUUAGAGAAAACACUGCACUUUGAGAUAAAUUAAGAGUCGUUUAUUAG
.....((......................................................)..)............................................
>ABGA01295423.1/8067-7958
CUGGCUCUCACUUGGUGGUGUUAAUAUCUCACUGGCACCUCCAAAAUGUUGUACCCAGAUGAGUUAGAGAAAAUGCCACACUUUGAGAUGAAUCAAGAGUCCUUUAUUAG
..........................((..................................)..)............................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 ((R)UU)R < 0.001 6.55
ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
...................................................................................................1.........
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........
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2 (()YUU) < 0.001 4.99
ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
...................................................................................................1.........
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........
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3 (NNUY) < 0.001 8.28
ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
...................................................................................................1.........
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........
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4 R(NNN)U < 0.001 5.43
ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
...................................................................................................1.........
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........
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ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 ((R)UU)A < 0.001 14.1
ABGA01294983.1/3821-3713
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
CCAGCUCUUGCCCGGUGGCAUUAAUUUCUCACUGGGGCCUCCAUUAUGUUGUACCCGGGGUGUUAGAGAAAACACCGUACUUUGAGAUGAAUUAAGAGUCCUUUAUUAG
...................................................................................................1.........
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........
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NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).