D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-96   (Rfam: RF00669)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
U(A(G))
(.U.().YUG.)
(UU()UY)
U(NG(C))
(.UNYNU.)
((A)NA)U
(N()N)
100.0
100.0
100.0
100.0
100.0
94.7
100.0
U(A(G))
(UU()UY)
U(NG(C))
(.UNYNU.)

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.9 %
(± 0.0598 %)
Decision tree:

5-fold cross-validation: 97.1 %
(± 4.98 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 97.1 %
(± 4.98 %)
of CAAB02000775.1/218086-218009
CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
(..((.(..((((((((.((((((..(((((.(((......)))....)))))..))))))))))))))..).))..)
.........1.........2.........3.........4.........5.........6.........7........
123456789012345678901234567890123456789012345678901234567890123456789012345678

abstract shape: ()

Number of sequences
Structure ORBs (out of 19) (%)
1 U(A(G))
 17 89.5
>CAAB02005445.1/236493-236570
UUGCCCAUUUUGGCACUAGCACAUUUUUGUUUCGUUUCCUGCUGUUUGAGCAAUCAUGUGUAGUGCCAAUAUGGGACA
................(.(.........................................))................
>CAAE01014535.1/342950-343027
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
................(.(.........................................))................
>AAPN01078070.1/2775-2698
UGGCCUCUUUUGGCACUAGCACAUUUUUGCUUUUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
................(.(.........................................))................
>AL590150.2/106766-106689
UUGCCUGUUUUGGCACUAGCACAUUUUUGCUUUUUUAUAUAUACCUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGACA
................(.(.........................................))................
>CAAA01210023.1/24901-24824
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUGUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
................(.(.........................................))................
>AAPY01581226.1/2090-2167
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUUAUGUGCAGUGCCAAUAUGGGAAA
................(.(.........................................))................
>AAIY01697149.1/2365-2288
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
................(.(.........................................))................
>AAVX01227232.1/474-397
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUUUGUAUAUGACUGUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAAA
................(.(.........................................))................
>AY866347.1/676-753
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
................(.(.........................................))................
>AAGV020207254.1/1850-1927
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUCUCUCUCUGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
................(.(.........................................))................
>AAYZ01439986.1/3739-3662
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGACA
................(.(.........................................))................
>AALT01103892.1/894-971
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAGAUGGGAAA
................(.(.........................................))................
>BAAF04047675.1/12047-12125
UGGCCCGUUUUGGCACUAGCACAUUUUUGCUUUUCUUUCUUGCUGUCUGAGCAAUCAUGUGUGGUGCCAAUAUGGGACA
................(.(.........................................).)................
>CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
................(.(.........................................))................
>AAFC03026276.1/18887-18810
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
................(.(.........................................))................
>AAFR03031888.1/53049-53126
UGGCCCGUUUUGGCACUAGCACAUUUUUGCUUCUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
................(.(.........................................))................
>AANH01001637.1/239663-239741
UGGCCCGUUUUGGCACUAGCACAUUUUUGCUUUGUCCCUUGUUUGUUUGAGCAAACAUGUGUGGUGCCAAUUUAGGACA
................(.(.........................................).)................
2 U(A(G))
(.U.().YUG.)
 14 73.7
>AAYZ01439986.1/3739-3662
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGACA
................(.(...........(.(..........)....)...........))................
>CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
................(.(...........(..(..........)...)...........))................
>CAAB02005445.1/236493-236570
UUGCCCAUUUUGGCACUAGCACAUUUUUGUUUCGUUUCCUGCUGUUUGAGCAAUCAUGUGUAGUGCCAAUAUGGGACA
................(.(...........(.(..........)....)...........))................
>AAPY01581226.1/2090-2167
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUUAUGUGCAGUGCCAAUAUGGGAAA
................(.(...........(.(..........)....)...........))................
>AAFR03031888.1/53049-53126
UGGCCCGUUUUGGCACUAGCACAUUUUUGCUUCUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
................(.(...........(..(..........)...)...........))................
>AL590150.2/106766-106689
UUGCCUGUUUUGGCACUAGCACAUUUUUGCUUUUUUAUAUAUACCUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGACA
................(.(...........(..(..........)...)...........))................
>AALT01103892.1/894-971
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAGAUGGGAAA
................(.(...........(.(..........)....)...........))................
>AAPN01078070.1/2775-2698
UGGCCUCUUUUGGCACUAGCACAUUUUUGCUUUUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
................(.(...........(..(..........)...)...........))................
>AAFC03026276.1/18887-18810
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
................(.(...........(.(..........)....)...........))................
>AAGV020207254.1/1850-1927
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUCUCUCUCUGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
................(.(...........(.(..........)....)...........))................
>AAVX01227232.1/474-397
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUUUGUAUAUGACUGUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAAA
................(.(...........(.(..........)....)...........))................
>CAAE01014535.1/342950-343027
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
................(.(...........(..(..........)...)...........))................
>AY866347.1/676-753
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
................(.(...........(.(..........)....)...........))................
>AAIY01697149.1/2365-2288
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
................(.(...........(.(..........)....)...........))................
3 U(A(G))
(.U.().YUG.)
(UU()UY)
 14 73.7
>AAFR03031888.1/53049-53126
UGGCCCGUUUUGGCACUAGCACAUUUUUGCUUCUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
................(.(....(..(...(..(..........)...)...)..)....))................
>CAAE01014535.1/342950-343027
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
................(.(....(..(...(..(..........)...)...)..)....))................
>AAFC03026276.1/18887-18810
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
................(.(....(..(...(.(..........)....)...)..)....))................
>AALT01103892.1/894-971
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAGAUGGGAAA
................(.(....(..(...(.(..........)....)...)..)....))................
>AL590150.2/106766-106689
UUGCCUGUUUUGGCACUAGCACAUUUUUGCUUUUUUAUAUAUACCUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGACA
................(.(....(..(...(..(..........)...)...)..)....))................
>AAYZ01439986.1/3739-3662
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGACA
................(.(....(..(...(.(..........)....)...)..)....))................
>CAAB02005445.1/236493-236570
UUGCCCAUUUUGGCACUAGCACAUUUUUGUUUCGUUUCCUGCUGUUUGAGCAAUCAUGUGUAGUGCCAAUAUGGGACA
................(.(....(..(...(.(..........)....)...)..)....))................
>AAVX01227232.1/474-397
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUUUGUAUAUGACUGUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAAA
................(.(....(..(...(.(..........)....)...)..)....))................
>CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
................(.(....(..(...(..(..........)...)...)..)....))................
>AAPN01078070.1/2775-2698
UGGCCUCUUUUGGCACUAGCACAUUUUUGCUUUUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
................(.(....(..(...(..(..........)...)...)..)....))................
>AAGV020207254.1/1850-1927
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUCUCUCUCUGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
................(.(....(..(...(.(..........)....)...)..)....))................
>AAPY01581226.1/2090-2167
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUUAUGUGCAGUGCCAAUAUGGGAAA
................(.(....(..(...(.(..........)....)...)..)....))................
>AAIY01697149.1/2365-2288
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
................(.(....(..(...(.(..........)....)...)..)....))................
>AY866347.1/676-753
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
................(.(....(..(...(.(..........)....)...)..)....))................
4 U(A(G))
(.U.().YUG.)
(UU()UY)
U(NG(C))
 12 63.2
>AL590150.2/106766-106689
UUGCCUGUUUUGGCACUAGCACAUUUUUGCUUUUUUAUAUAUACCUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGACA
(..(............(.(....(..(...(..(..........)...)...)..)....))............)..)
>AAPY01581226.1/2090-2167
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUUAUGUGCAGUGCCAAUAUGGGAAA
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
>AY866347.1/676-753
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
>CAAB02005445.1/236493-236570
UUGCCCAUUUUGGCACUAGCACAUUUUUGUUUCGUUUCCUGCUGUUUGAGCAAUCAUGUGUAGUGCCAAUAUGGGACA
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
>AAFC03026276.1/18887-18810
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
>AAGV020207254.1/1850-1927
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUCUCUCUCUGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
(..(............(.(....(..(...(.(..........)....)...)..)....))............))..
>AAYZ01439986.1/3739-3662
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGACA
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
>CAAE01014535.1/342950-343027
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
(..(............(.(....(..(...(..(..........)...)...)..)....))............)..)
>CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
(..(............(.(....(..(...(..(..........)...)...)..)....))............)..)
>AALT01103892.1/894-971
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAGAUGGGAAA
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
>AAIY01697149.1/2365-2288
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
(..(............(.(....(..(...(.(..........)....)...)..)....))............))..
>AAPN01078070.1/2775-2698
UGGCCUCUUUUGGCACUAGCACAUUUUUGCUUUUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
(..(............(.(....(..(...(..(..........)...)...)..)....))............)..)
5 U(A(G))
(.U.().YUG.)
(UU()UY)
U(NG(C))
(.UNYNU.)
 12 63.2
>CAAB02005445.1/236493-236570
UUGCCCAUUUUGGCACUAGCACAUUUUUGUUUCGUUUCCUGCUGUUUGAGCAAUCAUGUGUAGUGCCAAUAUGGGACA
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
>AL590150.2/106766-106689
UUGCCUGUUUUGGCACUAGCACAUUUUUGCUUUUUUAUAUAUACCUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGACA
(..(............(.(....(..(...(..(.(......).)...)...)..)....))............)..)
>CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
(..(............(.(....(..(...(..(.(......).)...)...)..)....))............)..)
>AAPY01581226.1/2090-2167
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUUAUGUGCAGUGCCAAUAUGGGAAA
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
>CAAE01014535.1/342950-343027
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
(..(............(.(....(..(...(..(.(......).)...)...)..)....))............)..)
>AAGV020207254.1/1850-1927
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUCUCUCUCUGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............))..
>AY866347.1/676-753
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
>AAYZ01439986.1/3739-3662
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGACA
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
>AAIY01697149.1/2365-2288
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............))..
>AAFC03026276.1/18887-18810
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
>AALT01103892.1/894-971
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAGAUGGGAAA
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
>AAPN01078070.1/2775-2698
UGGCCUCUUUUGGCACUAGCACAUUUUUGCUUUUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
(..(............(.(....(..(...(..(.(......).)...)...)..)....))............)..)
6 U(A(G))
(.U.().YUG.)
(UU()UY)
U(NG(C))
(.UNYNU.)
((A)NA)U
 11 57.9
>AAPY01581226.1/2090-2167
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUUAUGUGCAGUGCCAAUAUGGGAAA
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
>CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
(..(..(..(......(.(....(..(...(..(.(......).)...)...)..)....))......)..)..)..)
>AY866347.1/676-753
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
>CAAE01014535.1/342950-343027
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
(..(..(..(......(.(....(..(...(..(.(......).)...)...)..)....))......)..)..)..)
>AAGV020207254.1/1850-1927
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUCUCUCUCUGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..))..
>AAPN01078070.1/2775-2698
UGGCCUCUUUUGGCACUAGCACAUUUUUGCUUUUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
(..(..(..(......(.(....(..(...(..(.(......).)...)...)..)....))......)..)..)..)
>AAIY01697149.1/2365-2288
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..))..
>AAYZ01439986.1/3739-3662
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGACA
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
>AALT01103892.1/894-971
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAGAUGGGAAA
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
>CAAB02005445.1/236493-236570
UUGCCCAUUUUGGCACUAGCACAUUUUUGUUUCGUUUCCUGCUGUUUGAGCAAUCAUGUGUAGUGCCAAUAUGGGACA
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
>AAFC03026276.1/18887-18810
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
7 U(A(G))
(.U.().YUG.)
(UU()UY)
U(NG(C))
(.UNYNU.)
((A)NA)U
(N()N)
 7 36.8
>CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
(..((.(..(......(.(....(..(...(..(.(......).)...)...)..)....))......)..).))..)
>AAFC03026276.1/18887-18810
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
(..((.(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..).))..)
>AAPY01581226.1/2090-2167
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUUAUGUGCAGUGCCAAUAUGGGAAA
(..((.(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..).))..)
>AALT01103892.1/894-971
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAGAUGGGAAA
(..((.(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..).))..)
>AY866347.1/676-753
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
(..((.(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..).))..)
>AAIY01697149.1/2365-2288
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
(..((.(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..).)))..
>CAAE01014535.1/342950-343027
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
(..((.(..(......(.(....(..(...(..(.(......).)...)...)..)....))......)..).))..)

>CAAE01014535.1/342950-343027
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
................(.(.........................................))................
................(.(...........(..(..........)...)...........))................
................(.(....(..(...(..(..........)...)...)..)....))................
(..(............(.(....(..(...(..(..........)...)...)..)....))............)..)
(..(............(.(....(..(...(..(.(......).)...)...)..)....))............)..)
(..(..(..(......(.(....(..(...(..(.(......).)...)...)..)....))......)..)..)..)
(..((.(..(......(.(....(..(...(..(.(......).)...)...)..)....))......)..).))..)
>AAPY01581226.1/2090-2167
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUUAUGUGCAGUGCCAAUAUGGGAAA
................(.(.........................................))................
................(.(...........(.(..........)....)...........))................
................(.(....(..(...(.(..........)....)...)..)....))................
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
(..((.(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..).))..)
>AAIY01697149.1/2365-2288
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
................(.(.........................................))................
................(.(...........(.(..........)....)...........))................
................(.(....(..(...(.(..........)....)...)..)....))................
(..(............(.(....(..(...(.(..........)....)...)..)....))............))..
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............))..
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..))..
(..((.(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..).)))..
>AY866347.1/676-753
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
................(.(.........................................))................
................(.(...........(.(..........)....)...........))................
................(.(....(..(...(.(..........)....)...)..)....))................
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
(..((.(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..).))..)
>AALT01103892.1/894-971
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAGAUGGGAAA
................(.(.........................................))................
................(.(...........(.(..........)....)...........))................
................(.(....(..(...(.(..........)....)...)..)....))................
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
(..((.(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..).))..)
>CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
................(.(.........................................))................
................(.(...........(..(..........)...)...........))................
................(.(....(..(...(..(..........)...)...)..)....))................
(..(............(.(....(..(...(..(..........)...)...)..)....))............)..)
(..(............(.(....(..(...(..(.(......).)...)...)..)....))............)..)
(..(..(..(......(.(....(..(...(..(.(......).)...)...)..)....))......)..)..)..)
(..((.(..(......(.(....(..(...(..(.(......).)...)...)..)....))......)..).))..)
>AAFC03026276.1/18887-18810
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAA
................(.(.........................................))................
................(.(...........(.(..........)....)...........))................
................(.(....(..(...(.(..........)....)...)..)....))................
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
(..((.(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..).))..)
>CAAB02005445.1/236493-236570
UUGCCCAUUUUGGCACUAGCACAUUUUUGUUUCGUUUCCUGCUGUUUGAGCAAUCAUGUGUAGUGCCAAUAUGGGACA
................(.(.........................................))................
................(.(...........(.(..........)....)...........))................
................(.(....(..(...(.(..........)....)...)..)....))................
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
>AAPN01078070.1/2775-2698
UGGCCUCUUUUGGCACUAGCACAUUUUUGCUUUUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
................(.(.........................................))................
................(.(...........(..(..........)...)...........))................
................(.(....(..(...(..(..........)...)...)..)....))................
(..(............(.(....(..(...(..(..........)...)...)..)....))............)..)
(..(............(.(....(..(...(..(.(......).)...)...)..)....))............)..)
(..(..(..(......(.(....(..(...(..(.(......).)...)...)..)....))......)..)..)..)
>AAGV020207254.1/1850-1927
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUCUCUCUCUGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGA
................(.(.........................................))................
................(.(...........(.(..........)....)...........))................
................(.(....(..(...(.(..........)....)...)..)....))................
(..(............(.(....(..(...(.(..........)....)...)..)....))............))..
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............))..
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..))..
>AAYZ01439986.1/3739-3662
UGGCCGACUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGACA
................(.(.........................................))................
................(.(...........(.(..........)....)...........))................
................(.(....(..(...(.(..........)....)...)..)....))................
(..(............(.(....(..(...(.(..........)....)...)..)....))............)..)
(..(............(.(....(..(...(.(.(......).)....)...)..)....))............)..)
(..(..(..(......(.(....(..(...(.(.(......).)....)...)..)....))......)..)..)..)
>AL590150.2/106766-106689
UUGCCUGUUUUGGCACUAGCACAUUUUUGCUUUUUUAUAUAUACCUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGACA
................(.(.........................................))................
................(.(...........(..(..........)...)...........))................
................(.(....(..(...(..(..........)...)...)..)....))................
(..(............(.(....(..(...(..(..........)...)...)..)....))............)..)
(..(............(.(....(..(...(..(.(......).)...)...)..)....))............)..)
>AAVX01227232.1/474-397
UUGCCCAUUUUGGCACUAGCACAUUUUUGCUUUUGUAUAUGACUGUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAAA
................(.(.........................................))................
................(.(...........(.(..........)....)...........))................
................(.(....(..(...(.(..........)....)...)..)....))................
>AAFR03031888.1/53049-53126
UGGCCCGUUUUGGCACUAGCACAUUUUUGCUUCUGUCUCUCUGCUCUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
................(.(.........................................))................
................(.(...........(..(..........)...)...........))................
................(.(....(..(...(..(..........)...)...)..)....))................
>CAAA01210023.1/24901-24824
UGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUGUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAA
................(.(.........................................))................
>BAAF04047675.1/12047-12125
UGGCCCGUUUUGGCACUAGCACAUUUUUGCUUUUCUUUCUUGCUGUCUGAGCAAUCAUGUGUGGUGCCAAUAUGGGACA
................(.(.........................................).)................
>AANH01001637.1/239663-239741
UGGCCCGUUUUGGCACUAGCACAUUUUUGCUUUGUCCCUUGUUUGUUUGAGCAAACAUGUGUGGUGCCAAUUUAGGACA
................(.(.........................................).)................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 U(A(G)) < 0.001 30.9
CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
.........1.........2.........3.........4.........5.........6.........7........
123456789012345678901234567890123456789012345678901234567890123456789012345678
2 (.U.().YUG.) < 0.001 61.6
CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
.........1.........2.........3.........4.........5.........6.........7........
123456789012345678901234567890123456789012345678901234567890123456789012345678
3 (UU()UY) < 0.001 42.4
CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
.........1.........2.........3.........4.........5.........6.........7........
123456789012345678901234567890123456789012345678901234567890123456789012345678
4 U(NG(C)) < 0.001 12.7
CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
.........1.........2.........3.........4.........5.........6.........7........
123456789012345678901234567890123456789012345678901234567890123456789012345678
5 (.UNYNU.) < 0.001 9.34
CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
.........1.........2.........3.........4.........5.........6.........7........
123456789012345678901234567890123456789012345678901234567890123456789012345678
6 (N()N) < 0.001 3.38
CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
.........1.........2.........3.........4.........5.........6.........7........
123456789012345678901234567890123456789012345678901234567890123456789012345678
7 ((A)NA)U < 0.001 5.66
CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
.........1.........2.........3.........4.........5.........6.........7........
123456789012345678901234567890123456789012345678901234567890123456789012345678
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 U(R(G)) < 0.001 25.1
CAAB02000775.1/218086-218009
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
UCGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGA
.........1.........2.........3.........4.........5.........6.........7........
123456789012345678901234567890123456789012345678901234567890123456789012345678
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).