D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Small Cajal body specific RNA 16   (Rfam: RF00424)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(RGYN)
R(U(N))
Y(Y(C))
G(YN)Y
((N)N(U))
94.3
100.0
100.0
94.3
91.4
(RGYN)

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.2 %
(± 0.208 %)
Decision tree:

5-fold cross-validation: 82.6 %
(± 4.92 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 85.8 %
(± 3.12 %)
of AANN01153286.1/1817-2003
AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
(((((((((.((((((..)))(.(((....))))))))))))(.(((((((((((((..))))))))))))))))))((((.(.(((((((((((((((((...))))))))))))))))).((((((((((((((((((((((.(((((....)))))))))))))))))))))))))).))))))
...................................................................................................1.......................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.......
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abstract shape: (()())(()())

Number of sequences
Structure ORBs (out of 35) (%)
1 (RGYN)
 33 94.3
>ABDC01227248.1/65-248
AUGGUCUGGGGAAAGGCUCCUGUGUUGUUGAACCCGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGAAAAUUCCCAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
..................................................................................................................................................(....)................................
>AALT01276097.1/1207-1031
CUGGUCUGGGGAAAGGCUCCCGUGUGCUGGCCCGCAGUGCGGGUGCGGCCUUGUACCGGGCAGCACAACCUUGACCUACAGCAAGCGCCAGGGAGCAGUGUCUCCCAGCGCAUCUGCAGUAACAGGUGAGACCAUCCUAGCAGCAGAUUGAUGAUCAAAAUGAUACUGCACACAGAA
....................................................................................................................(....).......................................................
>AALT01483174.1/2240-2058
CUGGUCUGGCGAAAGGCUCCCGUGUGUCGCCUCGCAGUGUGGGUGCGGCCUCGUACCGGGCAGCGUGACCCUGACCUACAGCAAACGCCCCAGAGCCCAAGGGCCUCCCGGGGCGCGUCUGCAGUAACAGGUGUGAGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCACACAGAA
.................................................................................................................................................(....)................................
>EU240229.1/1-168
GAGGGCCUGGGGAUGGCUGCUGGCGGCUGUGUCUCAGCCUGGUGCCUGCUGGCCUUACCCGUGCCCCAGAUCAACCUCCAGAGGUCCCCCUGCUGGGUUCCUCCUAUGCAGUAACAGGUGUGAGCAUCCAUGCAGCAUUCUGAUGGUCAUGUAUGAUACUGCACACAA
...................................................................................................................(....)...............................................
>ABDC01168306.1/9156-8969
AUGGUCUGGGGAAAGGCUUCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCUGACCCUGACCUAAAGUAAAUUCUCAGGAGAAAGUCUUACCUGGGUUUUAAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
......................................................................................................................................................(....)................................
>CU655873.22/179924-180111
AUGGUCUUGGGGAGAGGCUCCUGUGUUGUUGAGCCUGCCCCGUUGUGGGUGCAACCUUGUACCAGGUAGCCCGACCCUGACCUAAAGUAAAUUCCCAGGAGAGUUGAUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAAAA
......................................................................................................................................................(....)................................
>AAWZ02009180.1/36450-36265
GUGGGCUGGGAAAUGGUUACUGUGUAGCUGGACUUCCUGAGACCCAGCCUUAUACCUGCUAACCUGAACCUUGCCCUAGAUAAAAAAGAAAACUGGCACACUCCUUCCUGGGGUCUGCCCUAUGCAGUAGCAGGUGUGAACAUUCUACCAGUAUUUUGAUGAUCAUGUAUGAUACUGCAUACACGU
....................................................................................................................................................(....)................................
>AAFR03028999.1/47437-47616
AUGGUCUGAAAAAAGGCUACUGUGUGGUUGAACCCCAGAAACCUGGGUGCAGCCCUGUACCAGUUAGCCUGACUUUGACCUAGAGUAAAUUCCCAGGAAAAAUGGGAUUUUAAUUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUAAUACUGCAAACAAUA
..............................................................................................................................................(....)................................
>AC093157.2/150637-150823
AUGGUCUUGGGAAAGGCUCCUGUGUUGUUGAACCUGCUCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGGAAAAGUCUUUCCUAGGUUGUGAAUUUGCAGUAAUAGGUGUGUGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAAACUGCAAACAGGA
.....................................................................................................................................................(....)................................
>AC069157.8/65923-65741
AUGGUCUGGGGAAAGGCUCCUGUGUGGCUGAACCUGCCCAGCUGUGGGUGCAGCCUUGUACCAGGCACCCCAACCCUGACCUAAAGUAAAUUCCCAGGAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCGCAGUUUGAUCAUAUAUGAUACUAUAAACAGGA
....................................................................................................(....).............................................................................
>AAHX01066807.1/71589-71772
ACGGUCUGGGGAAAGGCUCCUGUGUGGUUGACCCUGCCCUAGGUGGGUGCAGCCCUGUACCAGACAGCCCGACCUUGACCUAAAGUAAAUUCCCGGAGGAGCAUCCUCCCCGGGGUUUGAAUUUGCAGUAACAGGUGUGAGCAUCUUAGCAGUUUGGUGGUCAUGUAUGAUACUGCAAACAGGA
..................................................................................................................................................(....)................................
>AANN01729317.1/397-213
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGCAUGAGUGCAGCCUUGUACCAGGCAGUCAGACCUUGACCUAGAGUAAGUGCCUGAACAAGUUCUCAUGGGUCUUGGAACUUUCAGUAACAGGUGUGAGUAUUCUAGCAGCAGUUUGGUGAUUAUGUAUGAUACUGCAAACAGGA
...................................................................................................................................................(....)................................
>AAQR03091190.1/6640-6463
ACAGUCUGGGGCAAGGCUCCUGAGUUGCUGCAUCUGCCCAGCUGCAGGUUCAGCUUUGUACCAGGAAGCCCAACGUUAACAUAAAUUCCCAGAAGUCUUUCCUGCAUCAGAAUCUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGAUUGAUGAUCAUGUAUUAUACCGUACACAGGA
............................................................................................................................................(....)................................
>AAIY01302780.1/1279-1446
ACGGUCUGGGGACGGCUCCUGCAUGGCUGGACCCGCCCAGCAGUGGGUGCAGUCCCACCCUGACCUAGAGCAAAUGCUGGGGUGCUCCCCUGGGCUUGAAACUUGCAGUAACAGGUGUGAACAUUCUAGUAAGUAGUUUGAUGAUCAUGUAUGCUACUGCAAACAGGG
........................................(....)..........................................................................................................................
>AANU01180104.1/11905-11720
AUGGUCUCGGGAAAGGCUCCUGUGUUGUUGAACCUGCCAAUUGUGGGUGCAGCGUUGUACCAGGCAGCCCAACCCUGACCUACAGUAAAUUCCCGGGAGAAGGCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGGUGAUCAUGUAUGAUACUGCAAACAGGA
....................................................................................................................................................(....)................................
>AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
.....................................................................................................................................................(....)................................
>AANG01169155.1/5677-5865
AUGGUCUGGGGAGAGGCUCCUGUGUUGCUGAACCUGCCGGCUUGCGGGUGCAGCCUUGUAACCAGACAGCCCGACCCUGACCUAAAGUAAAUUCCCGGGAGCAAGUUUUUCCUGGGGUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.......................................................................................................................................................(....)................................
>AAQQ01109564.1/635-815
GUGGUCCGGGGAACGGCGCCUGUGUUGUCGCACCUGCCCAGUGGCCUGUGCAGCCCGUACCAGGCAGCCCCACCCUGACCUAGAGUAAGUCCCGGGGAGCCCUCCCGGGUCGGAAUCUGCAGUAACAGGUGUGAGCACUCUGGGCAGCCGCUUGUGGUCAUGUAUGAUACUGCAAACAGGC
................................................................................................................................................(....)...............................
>AJ609486.1/1-187
ACGGUCUGGGGAAAGGCUCCUGUGUUGUUGAGCCUGCCAAGUUGUGGGUGCAGCAUGGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCGGAAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.....................................................................................................................................................(....)................................
>AAHX01039931.1/4243-4430
AUGGUCUGGGGAAAGGCUCCUUGUGUGGUUGACCCUGCCCGAGGUGGGUGCAGCCCUGUACCAGAUAGCCCGACCUUGACCUAAAGUAAAUUCCCAGAGGCGCAUCCUCCCUGGGGUUAGAAUUUGCAGUAACAGGUGUGAACCUCUCGGUGGCAGUUCAGUGGUCAUGUAUGAUACUGCAAACAGGA
......................................................................................................................................................(....)................................
>AAPN01024575.1/1029-1216
GUGGUCAGGAGAAAGGCUGCUGAGUGGUUGAGCCCGGUCAGCCGGGCACGGCCUUGUAGCAGUUGGCCUUGAUCCCCGACCUAGAGUAAACCCCCAGGAAAGCUCCUUUCUGGGAUUUGAACUUUGCAGUAGCAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAAGA
......................................................................................................................................................(....)................................
>AC068544.7/102252-102068
AUAGUCUGUGGAAAGGCUACUGUGUUGUUGAACUUGCCCAGCUGUGGGUGCAGCCAUGUACCAGGCAGCCCAAGCCUGACAUAAAGUAAAUUCCCAGGAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUAAGCAUUCCAGCAGCAGUUUGUUGAUCAUGUGAUAUCAGAAAUGCAA
....................................................................................................(....)...............................................................................
>AL627205.12/140769-140961
ACGGUCUGGGAAAAGGCUCCUGUGUGGCUGUACCCGCCCGAGGUGGGUGCAGCCCCGUACCAGACAGCCCGACCUUGACCUAAAGUAAAAUCCCAGAGGAGGAGGAACCUCUUCCCUGGGGUUAGAAUUUGCAGUAACAGGUGUGGACAUCCUAGCAGCAGUUUGGUGGUCAUGUAUGAUACUGCAAACAGGA
...........................................................................................................................................................(....)................................
>AANU01219929.1/5530-5716
AUGGCCUUGGGAAAGGCUCCUGUGUUGUUGAACCUGCUCAGUUGUGGGUGCAGCCUUGCACCAGGCAGCCCAACCCUGCCCUAAAGUAAAUUUCCAGGAAAAGUCUUUCCUGGGUUGUGAAUCUGCAGUAACAGGUGUGCACAUCCUAGCAGCAGUUUGAUGAUCAUGGAUGAAACUGCAAACAGGA
.....................................................................................................................................................(....)................................
>AL158048.35/50425-50242
AUGGUCUGGGGAAAGGCUCCUAUGUUUUUGAACCUGCCCAGUUGUGGGUGCAAUCUUGCACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGCUGUGGGCAUUCUAGCAGCAGUUCGAUGAUCAUGUAUGGUACUGCAAACAGGA
..................................................................................................................................................(....)................................
>AANU01292006.1/9352-9170
AUGGUCUGGGGAAAGGCUCCUGUGUGGUUGAACCUGCCCAGUUGUGGGUACAGCCUUGUACUGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGGAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGCAACAGAUGUGAACAUUCUAGUGGCAGUUUGAUCAUGUAUGAUACUAUAAAUAGGA
...................................................................................................(....)..............................................................................
>AAEX03000900.1/9081-9262
AUGAUCUGAGGAAAGGCUCCUGUGUUGCUGAACCUGGCCUGUAGUGGGCGCAGCCUUGUACCAGGCAGCCAGAGCCUGACCUAAGUCAAUUCCCAGGAUAGUUCUUGGAGUUUGAAUUUGCAAUAACAGGUGUAAACAUUGUAGCAGCAGUUUGAUGAUCAUAUGUGUUAUUGCAAAUAGGA
................................................................................................................................................(....)................................
>AAYZ01114058.1/190-377
AUGGUCUGGGAACCGGCUCCUGUGUCGUUGCACCUGCCGGCGGUGGGCGCAGCACCGAUACCAGGCAGCCCGACCCUGACCUAAAGUGAAGGCCCAGGGCGACGACAGCCCCAGGGUUGACUUUGCAGUAAACAGGUGUGAGCAUUCUAGCAGCCGCUUGAUGGUCAUGUAUUAUACUGCAAACAGGC
......................................................................................................................................................(....)................................
>AAIY01323550.1/4949-5132
UCGGUCUGGGGAACGGCUUCUGUGUGGCUGGACCCGCCCAGCAGUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUCGGGGCGCUCCCCUGGGCUUGAAACUUGCAGUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUGUAUGCUACUGCAAACAGGA
..................................................................................................................................................(....)................................
>AANN01194312.1/1217-1403
AUGGUCUGUAGAAAGGCUCCUGUGUUGCUGAACUUCUCCAGCAUAGGUGCAGCCUUGUACUAGGCAGCUCAACCCUGACCUAGAGUGUGCCAGGGACUUCAGGUUGCCCUAGGGCUUUGAACUUACAAUAACAGGUGUGAACAUUCUAGCAGCAAUUUGAUGAUAAUGUAUGAUACUGCAAACAAAC
.....................................................................................................................................................(....)................................
>AAIY01113267.1/1143-960
UAUGAUUGGGGAACAGCUCCUAUGCGGCUUAACCCACCCAGCAUUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUUGGGGCGCUCCCCUGGGCUUAGAACUUGCACUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUAUAUGCUACUGCAAACAGGA
..................................................................................................................................................(....)................................
>AACN011006597.1/519-327
AUGGUCUGCGGAAAGGCUCCUGUGUGGCCGCACCUGCCCGGGUGUGGGUGCAGCCUUGUACCAGGCAGCCCGAGCCUGACCUAGAGUAAAAUCCCCCGGGGGGGCCCAGUUCCCCCCGGGGUUUGGAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
...........................................................................................................................................................(....)................................
>AAFC03022382.1/31783-31596
GUGGUCUGGGGAGAGGCUCCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAACCUUGUACCAGGCAGCCCGACCCUGACCUAAAGUAAAUUCCUAGGAGAACUGUUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGAA
......................................................................................................................................................(....)................................
2 (RGYN)
R(U(N))
 29 82.9
>AAIY01302780.1/1279-1446
ACGGUCUGGGGACGGCUCCUGCAUGGCUGGACCCGCCCAGCAGUGGGUGCAGUCCCACCCUGACCUAGAGCAAAUGCUGGGGUGCUCCCCUGGGCUUGAAACUUGCAGUAACAGGUGUGAACAUUCUAGUAAGUAGUUUGAUGAUCAUGUAUGCUACUGCAAACAGGG
...(.(.................................)).....................................................................................(....)....................................
>AANU01219929.1/5530-5716
AUGGCCUUGGGAAAGGCUCCUGUGUUGUUGAACCUGCUCAGUUGUGGGUGCAGCCUUGCACCAGGCAGCCCAACCCUGCCCUAAAGUAAAUUUCCAGGAAAAGUCUUUCCUGGGUUGUGAAUCUGCAGUAACAGGUGUGCACAUCCUAGCAGCAGUUUGAUGAUCAUGGAUGAAACUGCAAACAGGA
...............................................(.(..................))...............................................................................(....)................................
>AAYZ01114058.1/190-377
AUGGUCUGGGAACCGGCUCCUGUGUCGUUGCACCUGCCGGCGGUGGGCGCAGCACCGAUACCAGGCAGCCCGACCCUGACCUAAAGUGAAGGCCCAGGGCGACGACAGCCCCAGGGUUGACUUUGCAGUAAACAGGUGUGAGCAUUCUAGCAGCCGCUUGAUGGUCAUGUAUUAUACUGCAAACAGGC
.....................(.(....................................))........................................................................................(....)................................
>AAEX03000900.1/9081-9262
AUGAUCUGAGGAAAGGCUCCUGUGUUGCUGAACCUGGCCUGUAGUGGGCGCAGCCUUGUACCAGGCAGCCAGAGCCUGACCUAAGUCAAUUCCCAGGAUAGUUCUUGGAGUUUGAAUUUGCAAUAACAGGUGUAAACAUUGUAGCAGCAGUUUGAUGAUCAUAUGUGUUAUUGCAAAUAGGA
.....................(.(............................................))..........................................................................(....)................................
>AANN01194312.1/1217-1403
AUGGUCUGUAGAAAGGCUCCUGUGUUGCUGAACUUCUCCAGCAUAGGUGCAGCCUUGUACUAGGCAGCUCAACCCUGACCUAGAGUGUGCCAGGGACUUCAGGUUGCCCUAGGGCUUUGAACUUACAAUAACAGGUGUGAACAUUCUAGCAGCAAUUUGAUGAUAAUGUAUGAUACUGCAAACAAAC
......................................................................................(.(..............))............................................(....)................................
>AAQR03091190.1/6640-6463
ACAGUCUGGGGCAAGGCUCCUGAGUUGCUGCAUCUGCCCAGCUGCAGGUUCAGCUUUGUACCAGGAAGCCCAACGUUAACAUAAAUUCCCAGAAGUCUUUCCUGCAUCAGAAUCUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGAUUGAUGAUCAUGUAUUAUACCGUACACAGGA
.......................(.(.................................))...............................................................................(....)................................
>AL158048.35/50425-50242
AUGGUCUGGGGAAAGGCUCCUAUGUUUUUGAACCUGCCCAGUUGUGGGUGCAAUCUUGCACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGCUGUGGGCAUUCUAGCAGCAGUUCGAUGAUCAUGUAUGGUACUGCAAACAGGA
........................................(.(...............................))......................................................................(....)................................
>AAIY01323550.1/4949-5132
UCGGUCUGGGGAACGGCUUCUGUGUGGCUGGACCCGCCCAGCAGUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUCGGGGCGCUCCCCUGGGCUUGAAACUUGCAGUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUGUAUGCUACUGCAAACAGGA
...............................................(.(..................))............................................................................(....)................................
>AAWZ02009180.1/36450-36265
GUGGGCUGGGAAAUGGUUACUGUGUAGCUGGACUUCCUGAGACCCAGCCUUAUACCUGCUAACCUGAACCUUGCCCUAGAUAAAAAAGAAAACUGGCACACUCCUUCCUGGGGUCUGCCCUAUGCAGUAGCAGGUGUGAACAUUCUACCAGUAUUUUGAUGAUCAUGUAUGAUACUGCAUACACGU
.....................(.(..............................).)...........................................................................................(....)................................
>ABDC01168306.1/9156-8969
AUGGUCUGGGGAAAGGCUUCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCUGACCCUGACCUAAAGUAAAUUCUCAGGAGAAAGUCUUACCUGGGUUUUAAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
...............................................(.(..................))................................................................................(....)................................
>AAIY01113267.1/1143-960
UAUGAUUGGGGAACAGCUCCUAUGCGGCUUAACCCACCCAGCAUUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUUGGGGCGCUCCCCUGGGCUUAGAACUUGCACUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUAUAUGCUACUGCAAACAGGA
..........................................(.(...........................))........................................................................(....)................................
>EU240229.1/1-168
GAGGGCCUGGGGAUGGCUGCUGGCGGCUGUGUCUCAGCCUGGUGCCUGCUGGCCUUACCCGUGCCCCAGAUCAACCUCCAGAGGUCCCCCUGCUGGGUUCCUCCUAUGCAGUAACAGGUGUGAGCAUCCAUGCAGCAUUCUGAUGGUCAUGUAUGAUACUGCACACAA
............(.(......................................))............................................................(....)...............................................
>CU655873.22/179924-180111
AUGGUCUUGGGGAGAGGCUCCUGUGUUGUUGAGCCUGCCCCGUUGUGGGUGCAACCUUGUACCAGGUAGCCCGACCCUGACCUAAAGUAAAUUCCCAGGAGAGUUGAUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAAAA
.........................................(.(...............................)).........................................................................(....)................................
>AC093157.2/150637-150823
AUGGUCUUGGGAAAGGCUCCUGUGUUGUUGAACCUGCUCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGGAAAAGUCUUUCCUAGGUUGUGAAUUUGCAGUAAUAGGUGUGUGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAAACUGCAAACAGGA
........................................(.(...............................)).........................................................................(....)................................
>AAQQ01109564.1/635-815
GUGGUCCGGGGAACGGCGCCUGUGUUGUCGCACCUGCCCAGUGGCCUGUGCAGCCCGUACCAGGCAGCCCCACCCUGACCUAGAGUAAGUCCCGGGGAGCCCUCCCGGGUCGGAAUCUGCAGUAACAGGUGUGAGCACUCUGGGCAGCCGCUUGUGGUCAUGUAUGAUACUGCAAACAGGC
.....................(.(...................................))...................................................................................(....)...............................
>AAFR03028999.1/47437-47616
AUGGUCUGAAAAAAGGCUACUGUGUGGUUGAACCCCAGAAACCUGGGUGCAGCCCUGUACCAGUUAGCCUGACUUUGACCUAGAGUAAAUUCCCAGGAAAAAUGGGAUUUUAAUUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUAAUACUGCAAACAAUA
.......................(.(...........................)).......................................................................................(....)................................
>ABDC01227248.1/65-248
AUGGUCUGGGGAAAGGCUCCUGUGUUGUUGAACCCGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGAAAAUUCCCAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
........................................(.(...............................))......................................................................(....)................................
>AAFC03022382.1/31783-31596
GUGGUCUGGGGAGAGGCUCCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAACCUUGUACCAGGCAGCCCGACCCUGACCUAAAGUAAAUUCCUAGGAGAACUGUUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGAA
.....................(.(....................................))........................................................................................(....)................................
>AANG01169155.1/5677-5865
AUGGUCUGGGGAGAGGCUCCUGUGUUGCUGAACCUGCCGGCUUGCGGGUGCAGCCUUGUAACCAGACAGCCCGACCCUGACCUAAAGUAAAUUCCCGGGAGCAAGUUUUUCCUGGGGUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.......................(.(.......................................))....................................................................................(....)................................
>AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
..........................................(.(..........................))............................................................................(....)................................
>AC069157.8/65923-65741
AUGGUCUGGGGAAAGGCUCCUGUGUGGCUGAACCUGCCCAGCUGUGGGUGCAGCCUUGUACCAGGCACCCCAACCCUGACCUAAAGUAAAUUCCCAGGAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCGCAGUUUGAUCAUAUAUGAUACUAUAAACAGGA
.....................(.(...................)).......................................................(....).............................................................................
>AAHX01066807.1/71589-71772
ACGGUCUGGGGAAAGGCUCCUGUGUGGUUGACCCUGCCCUAGGUGGGUGCAGCCCUGUACCAGACAGCCCGACCUUGACCUAAAGUAAAUUCCCGGAGGAGCAUCCUCCCCGGGGUUUGAAUUUGCAGUAACAGGUGUGAGCAUCUUAGCAGUUUGGUGGUCAUGUAUGAUACUGCAAACAGGA
.....................(.(...................................)).....................................................................................(....)................................
>AJ609486.1/1-187
ACGGUCUGGGGAAAGGCUCCUGUGUUGUUGAGCCUGCCAAGUUGUGGGUGCAGCAUGGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCGGAAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
........................................(.(...............................)).........................................................................(....)................................
>AANU01180104.1/11905-11720
AUGGUCUCGGGAAAGGCUCCUGUGUUGUUGAACCUGCCAAUUGUGGGUGCAGCGUUGUACCAGGCAGCCCAACCCUGACCUACAGUAAAUUCCCGGGAGAAGGCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGGUGAUCAUGUAUGAUACUGCAAACAGGA
.......................................(.(...............................)).........................................................................(....)................................
>AACN011006597.1/519-327
AUGGUCUGCGGAAAGGCUCCUGUGUGGCCGCACCUGCCCGGGUGUGGGUGCAGCCUUGUACCAGGCAGCCCGAGCCUGACCUAGAGUAAAAUCCCCCGGGGGGGCCCAGUUCCCCCCGGGGUUUGGAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.......................(.(...........................................))....................................................................................(....)................................
>AAHX01039931.1/4243-4430
AUGGUCUGGGGAAAGGCUCCUUGUGUGGUUGACCCUGCCCGAGGUGGGUGCAGCCCUGUACCAGAUAGCCCGACCUUGACCUAAAGUAAAUUCCCAGAGGCGCAUCCUCCCUGGGGUUAGAAUUUGCAGUAACAGGUGUGAACCUCUCGGUGGCAGUUCAGUGGUCAUGUAUGAUACUGCAAACAGGA
......................(.(...................................))........................................................................................(....)................................
>AALT01483174.1/2240-2058
CUGGUCUGGCGAAAGGCUCCCGUGUGUCGCCUCGCAGUGUGGGUGCGGCCUCGUACCGGGCAGCGUGACCCUGACCUACAGCAAACGCCCCAGAGCCCAAGGGCCUCCCGGGGCGCGUCUGCAGUAACAGGUGUGAGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCACACAGAA
....................................(.(..............................))..........................................................................(....)................................
>AALT01276097.1/1207-1031
CUGGUCUGGGGAAAGGCUCCCGUGUGCUGGCCCGCAGUGCGGGUGCGGCCUUGUACCGGGCAGCACAACCUUGACCUACAGCAAGCGCCAGGGAGCAGUGUCUCCCAGCGCAUCUGCAGUAACAGGUGAGACCAUCCUAGCAGCAGAUUGAUGAUCAAAAUGAUACUGCACACAGAA
..........................................(.(..................))...................................................(....).......................................................
>AL627205.12/140769-140961
ACGGUCUGGGAAAAGGCUCCUGUGUGGCUGUACCCGCCCGAGGUGGGUGCAGCCCCGUACCAGACAGCCCGACCUUGACCUAAAGUAAAAUCCCAGAGGAGGAGGAACCUCUUCCCUGGGGUUAGAAUUUGCAGUAACAGGUGUGGACAUCCUAGCAGCAGUUUGGUGGUCAUGUAUGAUACUGCAAACAGGA
.....................(.(...............................)....)..............................................................................................(....)................................
3 (RGYN)
R(U(N))
Y(Y(C))
 23 65.7
>AL158048.35/50425-50242
AUGGUCUGGGGAAAGGCUCCUAUGUUUUUGAACCUGCCCAGUUGUGGGUGCAAUCUUGCACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGCUGUGGGCAUUCUAGCAGCAGUUCGAUGAUCAUGUAUGGUACUGCAAACAGGA
........................................(.(...............................))................................................................(.(...(....)...))...........................
>AAIY01113267.1/1143-960
UAUGAUUGGGGAACAGCUCCUAUGCGGCUUAACCCACCCAGCAUUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUUGGGGCGCUCCCCUGGGCUUAGAACUUGCACUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUAUAUGCUACUGCAAACAGGA
..........................................(.(...........................))..................................................................(.(...(....)...))...........................
>AAFC03022382.1/31783-31596
GUGGUCUGGGGAGAGGCUCCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAACCUUGUACCAGGCAGCCCGACCCUGACCUAAAGUAAAUUCCUAGGAGAACUGUUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGAA
.....................(.(....................................))..................................................................................(.(...(....)...))...........................
>CU655873.22/179924-180111
AUGGUCUUGGGGAGAGGCUCCUGUGUUGUUGAGCCUGCCCCGUUGUGGGUGCAACCUUGUACCAGGUAGCCCGACCCUGACCUAAAGUAAAUUCCCAGGAGAGUUGAUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAAAA
.........................................(.(...............................))...................................................................(.(...(....)...))...........................
>AANU01219929.1/5530-5716
AUGGCCUUGGGAAAGGCUCCUGUGUUGUUGAACCUGCUCAGUUGUGGGUGCAGCCUUGCACCAGGCAGCCCAACCCUGCCCUAAAGUAAAUUUCCAGGAAAAGUCUUUCCUGGGUUGUGAAUCUGCAGUAACAGGUGUGCACAUCCUAGCAGCAGUUUGAUGAUCAUGGAUGAAACUGCAAACAGGA
...............................................(.(..................)).........................................................................(.(...(....)...))...........................
>AAIY01323550.1/4949-5132
UCGGUCUGGGGAACGGCUUCUGUGUGGCUGGACCCGCCCAGCAGUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUCGGGGCGCUCCCCUGGGCUUGAAACUUGCAGUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUGUAUGCUACUGCAAACAGGA
...............................................(.(..................))......................................................................(.(...(....)...))...........................
>AAYZ01114058.1/190-377
AUGGUCUGGGAACCGGCUCCUGUGUCGUUGCACCUGCCGGCGGUGGGCGCAGCACCGAUACCAGGCAGCCCGACCCUGACCUAAAGUGAAGGCCCAGGGCGACGACAGCCCCAGGGUUGACUUUGCAGUAAACAGGUGUGAGCAUUCUAGCAGCCGCUUGAUGGUCAUGUAUUAUACUGCAAACAGGC
.....................(.(....................................))..................................................................................(.(...(....)...))...........................
>ABDC01168306.1/9156-8969
AUGGUCUGGGGAAAGGCUUCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCUGACCCUGACCUAAAGUAAAUUCUCAGGAGAAAGUCUUACCUGGGUUUUAAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
...............................................(.(..................))..........................................................................(.(...(....)...))...........................
>AANN01194312.1/1217-1403
AUGGUCUGUAGAAAGGCUCCUGUGUUGCUGAACUUCUCCAGCAUAGGUGCAGCCUUGUACUAGGCAGCUCAACCCUGACCUAGAGUGUGCCAGGGACUUCAGGUUGCCCUAGGGCUUUGAACUUACAAUAACAGGUGUGAACAUUCUAGCAGCAAUUUGAUGAUAAUGUAUGAUACUGCAAACAAAC
......................................................................................(.(..............))......................................(.(...(....)...))...........................
>AAQR03091190.1/6640-6463
ACAGUCUGGGGCAAGGCUCCUGAGUUGCUGCAUCUGCCCAGCUGCAGGUUCAGCUUUGUACCAGGAAGCCCAACGUUAACAUAAAUUCCCAGAAGUCUUUCCUGCAUCAGAAUCUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGAUUGAUGAUCAUGUAUUAUACCGUACACAGGA
.......................(.(.................................)).........................................................................(.(...(....)...))...........................
>AANU01180104.1/11905-11720
AUGGUCUCGGGAAAGGCUCCUGUGUUGUUGAACCUGCCAAUUGUGGGUGCAGCGUUGUACCAGGCAGCCCAACCCUGACCUACAGUAAAUUCCCGGGAGAAGGCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGGUGAUCAUGUAUGAUACUGCAAACAGGA
.......................................(.(...............................))...................................................................(.(...(....)...))...........................
>AJ609486.1/1-187
ACGGUCUGGGGAAAGGCUCCUGUGUUGUUGAGCCUGCCAAGUUGUGGGUGCAGCAUGGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCGGAAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
........................................(.(...............................))...................................................................(.(...(....)...))...........................
>AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
..........................................(.(..........................))......................................................................(.(...(....)...))...........................
>ABDC01227248.1/65-248
AUGGUCUGGGGAAAGGCUCCUGUGUUGUUGAACCCGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGAAAAUUCCCAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
........................................(.(...............................))................................................................(.(...(....)...))...........................
>AAFR03028999.1/47437-47616
AUGGUCUGAAAAAAGGCUACUGUGUGGUUGAACCCCAGAAACCUGGGUGCAGCCCUGUACCAGUUAGCCUGACUUUGACCUAGAGUAAAUUCCCAGGAAAAAUGGGAUUUUAAUUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUAAUACUGCAAACAAUA
.......................(.(...........................)).................................................................................(.(...(....)...))...........................
>AACN011006597.1/519-327
AUGGUCUGCGGAAAGGCUCCUGUGUGGCCGCACCUGCCCGGGUGUGGGUGCAGCCUUGUACCAGGCAGCCCGAGCCUGACCUAGAGUAAAAUCCCCCGGGGGGGCCCAGUUCCCCCCGGGGUUUGGAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.......................(.(...........................................))..............................................................................(.(...(....)...))...........................
>AAWZ02009180.1/36450-36265
GUGGGCUGGGAAAUGGUUACUGUGUAGCUGGACUUCCUGAGACCCAGCCUUAUACCUGCUAACCUGAACCUUGCCCUAGAUAAAAAAGAAAACUGGCACACUCCUUCCUGGGGUCUGCCCUAUGCAGUAGCAGGUGUGAACAUUCUACCAGUAUUUUGAUGAUCAUGUAUGAUACUGCAUACACGU
.....................(.(..............................).).....................................................................................(.(...(....)...))...........................
>AALT01276097.1/1207-1031
CUGGUCUGGGGAAAGGCUCCCGUGUGCUGGCCCGCAGUGCGGGUGCGGCCUUGUACCGGGCAGCACAACCUUGACCUACAGCAAGCGCCAGGGAGCAGUGUCUCCCAGCGCAUCUGCAGUAACAGGUGAGACCAUCCUAGCAGCAGAUUGAUGAUCAAAAUGAUACUGCACACAGAA
....................................(.(..............................))...............................................................(.(...(....)...))..........................
>AANG01169155.1/5677-5865
AUGGUCUGGGGAGAGGCUCCUGUGUUGCUGAACCUGCCGGCUUGCGGGUGCAGCCUUGUAACCAGACAGCCCGACCCUGACCUAAAGUAAAUUCCCGGGAGCAAGUUUUUCCUGGGGUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.......................(.(.......................................))..............................................................................(.(...(....)...))...........................
>AL627205.12/140769-140961
ACGGUCUGGGAAAAGGCUCCUGUGUGGCUGUACCCGCCCGAGGUGGGUGCAGCCCCGUACCAGACAGCCCGACCUUGACCUAAAGUAAAAUCCCAGAGGAGGAGGAACCUCUUCCCUGGGGUUAGAAUUUGCAGUAACAGGUGUGGACAUCCUAGCAGCAGUUUGGUGGUCAUGUAUGAUACUGCAAACAGGA
.....................(.(...............................)....)........................................................................................(.(...(....)...))...........................
>AC093157.2/150637-150823
AUGGUCUUGGGAAAGGCUCCUGUGUUGUUGAACCUGCUCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGGAAAAGUCUUUCCUAGGUUGUGAAUUUGCAGUAAUAGGUGUGUGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAAACUGCAAACAGGA
........................................(.(...............................))...................................................................(.(...(....)...))...........................
>AALT01483174.1/2240-2058
CUGGUCUGGCGAAAGGCUCCCGUGUGUCGCCUCGCAGUGUGGGUGCGGCCUCGUACCGGGCAGCGUGACCCUGACCUACAGCAAACGCCCCAGAGCCCAAGGGCCUCCCGGGGCGCGUCUGCAGUAACAGGUGUGAGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCACACAGAA
....................................(.(..............................))....................................................................(.(...(....)...))...........................
>AAIY01302780.1/1279-1446
ACGGUCUGGGGACGGCUCCUGCAUGGCUGGACCCGCCCAGCAGUGGGUGCAGUCCCACCCUGACCUAGAGCAAAUGCUGGGGUGCUCCCCUGGGCUUGAAACUUGCAGUAACAGGUGUGAACAUUCUAGUAAGUAGUUUGAUGAUCAUGUAUGCUACUGCAAACAGGG
...(.(.................................))..................................................................................(.((....)...)....)...........................
4 (RGYN)
R(U(N))
Y(Y(C))
G(YN)Y
 18 51.4
>AALT01276097.1/1207-1031
CUGGUCUGGGGAAAGGCUCCCGUGUGCUGGCCCGCAGUGCGGGUGCGGCCUUGUACCGGGCAGCACAACCUUGACCUACAGCAAGCGCCAGGGAGCAGUGUCUCCCAGCGCAUCUGCAGUAACAGGUGAGACCAUCCUAGCAGCAGAUUGAUGAUCAAAAUGAUACUGCACACAGAA
....................................(.(.............(..).............))...............................................................(.(...(....)...))..........................
>AAFC03022382.1/31783-31596
GUGGUCUGGGGAGAGGCUCCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAACCUUGUACCAGGCAGCCCGACCCUGACCUAAAGUAAAUUCCUAGGAGAACUGUUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGAA
.....................(.(...........(..).....................))..................................................................................(.(...(....)...))...........................
>ABDC01227248.1/65-248
AUGGUCUGGGGAAAGGCUCCUGUGUUGUUGAACCCGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGAAAAUUCCCAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
........................................(.(..............(..).............))................................................................(.(...(....)...))...........................
>CU655873.22/179924-180111
AUGGUCUUGGGGAGAGGCUCCUGUGUUGUUGAGCCUGCCCCGUUGUGGGUGCAACCUUGUACCAGGUAGCCCGACCCUGACCUAAAGUAAAUUCCCAGGAGAGUUGAUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAAAA
.........................................(.(..............(..).............))...................................................................(.(...(....)...))...........................
>AAFR03028999.1/47437-47616
AUGGUCUGAAAAAAGGCUACUGUGUGGUUGAACCCCAGAAACCUGGGUGCAGCCCUGUACCAGUUAGCCUGACUUUGACCUAGAGUAAAUUCCCAGGAAAAAUGGGAUUUUAAUUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUAAUACUGCAAACAAUA
(.(................................................(..)........................)).......................................................(.(...(....)...))...........................
>AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
..........................................(.(...........(..)...........))......................................................................(.(...(....)...))...........................
>AAIY01113267.1/1143-960
UAUGAUUGGGGAACAGCUCCUAUGCGGCUUAACCCACCCAGCAUUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUUGGGGCGCUCCCCUGGGCUUAGAACUUGCACUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUAUAUGCUACUGCAAACAGGA
..........................................(.(............(..)...........))..................................................................(.(...(....)...))...........................
>AANG01169155.1/5677-5865
AUGGUCUGGGGAGAGGCUCCUGUGUUGCUGAACCUGCCGGCUUGCGGGUGCAGCCUUGUAACCAGACAGCCCGACCCUGACCUAAAGUAAAUUCCCGGGAGCAAGUUUUUCCUGGGGUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.......................(.(..........................(..).........))..............................................................................(.(...(....)...))...........................
>AALT01483174.1/2240-2058
CUGGUCUGGCGAAAGGCUCCCGUGUGUCGCCUCGCAGUGUGGGUGCGGCCUCGUACCGGGCAGCGUGACCCUGACCUACAGCAAACGCCCCAGAGCCCAAGGGCCUCCCGGGGCGCGUCUGCAGUAACAGGUGUGAGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCACACAGAA
....................................(.(.............(..).............))....................................................................(.(...(....)...))...........................
>AJ609486.1/1-187
ACGGUCUGGGGAAAGGCUCCUGUGUUGUUGAGCCUGCCAAGUUGUGGGUGCAGCAUGGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCGGAAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
........................................(.(..............(..).............))...................................................................(.(...(....)...))...........................
>AAIY01323550.1/4949-5132
UCGGUCUGGGGAACGGCUUCUGUGUGGCUGGACCCGCCCAGCAGUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUCGGGGCGCUCCCCUGGGCUUGAAACUUGCAGUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUGUAUGCUACUGCAAACAGGA
...............................................(.(.......(..).......))......................................................................(.(...(....)...))...........................
>AAQR03091190.1/6640-6463
ACAGUCUGGGGCAAGGCUCCUGAGUUGCUGCAUCUGCCCAGCUGCAGGUUCAGCUUUGUACCAGGAAGCCCAACGUUAACAUAAAUUCCCAGAAGUCUUUCCUGCAUCAGAAUCUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGAUUGAUGAUCAUGUAUUAUACCGUACACAGGA
.......................(.(.........(..)....................)).........................................................................(.(...(....)...))...........................
>AAYZ01114058.1/190-377
AUGGUCUGGGAACCGGCUCCUGUGUCGUUGCACCUGCCGGCGGUGGGCGCAGCACCGAUACCAGGCAGCCCGACCCUGACCUAAAGUGAAGGCCCAGGGCGACGACAGCCCCAGGGUUGACUUUGCAGUAAACAGGUGUGAGCAUUCUAGCAGCCGCUUGAUGGUCAUGUAUUAUACUGCAAACAGGC
.....................(.(......................(..)..........))..................................................................................(.(...(....)...))...........................
>AANU01219929.1/5530-5716
AUGGCCUUGGGAAAGGCUCCUGUGUUGUUGAACCUGCUCAGUUGUGGGUGCAGCCUUGCACCAGGCAGCCCAACCCUGCCCUAAAGUAAAUUUCCAGGAAAAGUCUUUCCUGGGUUGUGAAUCUGCAGUAACAGGUGUGCACAUCCUAGCAGCAGUUUGAUGAUCAUGGAUGAAACUGCAAACAGGA
...............................................(.(.......(..).......)).........................................................................(.(...(....)...))...........................
>AC093157.2/150637-150823
AUGGUCUUGGGAAAGGCUCCUGUGUUGUUGAACCUGCUCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGGAAAAGUCUUUCCUAGGUUGUGAAUUUGCAGUAAUAGGUGUGUGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAAACUGCAAACAGGA
........................................(.(..............(..).............))...................................................................(.(...(....)...))...........................
>AACN011006597.1/519-327
AUGGUCUGCGGAAAGGCUCCUGUGUGGCCGCACCUGCCCGGGUGUGGGUGCAGCCUUGUACCAGGCAGCCCGAGCCUGACCUAGAGUAAAAUCCCCCGGGGGGGCCCAGUUCCCCCCGGGGUUUGGAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.......................(.(..........................(..).............))..............................................................................(.(...(....)...))...........................
>ABDC01168306.1/9156-8969
AUGGUCUGGGGAAAGGCUUCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCUGACCCUGACCUAAAGUAAAUUCUCAGGAGAAAGUCUUACCUGGGUUUUAAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
...............................................(.(.......(..).......))..........................................................................(.(...(....)...))...........................
>AANU01180104.1/11905-11720
AUGGUCUCGGGAAAGGCUCCUGUGUUGUUGAACCUGCCAAUUGUGGGUGCAGCGUUGUACCAGGCAGCCCAACCCUGACCUACAGUAAAUUCCCGGGAGAAGGCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGGUGAUCAUGUAUGAUACUGCAAACAGGA
.......................................(.(..............(..).............))...................................................................(.(...(....)...))...........................
5 (RGYN)
R(U(N))
Y(Y(C))
G(YN)Y
((N)N(U))
 13 37.1
>AANU01180104.1/11905-11720
AUGGUCUCGGGAAAGGCUCCUGUGUUGUUGAACCUGCCAAUUGUGGGUGCAGCGUUGUACCAGGCAGCCCAACCCUGACCUACAGUAAAUUCCCGGGAGAAGGCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGGUGAUCAUGUAUGAUACUGCAAACAGGA
.......................................(.(..............(..).............)).........((................................).(.....................(.(...(....)...)).....................))....
>AAIY01113267.1/1143-960
UAUGAUUGGGGAACAGCUCCUAUGCGGCUUAACCCACCCAGCAUUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUUGGGGCGCUCCCCUGGGCUUAGAACUUGCACUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUAUAUGCUACUGCAAACAGGA
..........................................(.(............(..)...........)).........((................................).(....................(.(...(....)...))....................)).....
>CU655873.22/179924-180111
AUGGUCUUGGGGAGAGGCUCCUGUGUUGUUGAGCCUGCCCCGUUGUGGGUGCAACCUUGUACCAGGUAGCCCGACCCUGACCUAAAGUAAAUUCCCAGGAGAGUUGAUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAAAA
................................................(.(.......(..).......))...............((................................).(.....................(.(...(....)...)).....................))....
>ABDC01227248.1/65-248
AUGGUCUGGGGAAAGGCUCCUGUGUUGUUGAACCCGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGAAAAUUCCCAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
...............................................(.(.......(..).......))...............((.............................).(.....................(.(...(....)...)).....................))....
>AJ609486.1/1-187
ACGGUCUGGGGAAAGGCUCCUGUGUUGUUGAGCCUGCCAAGUUGUGGGUGCAGCAUGGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCGGAAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
........................................(.(..............(..).............)).........((................................).(.....................(.(...(....)...)).....................))....
>AAFC03022382.1/31783-31596
GUGGUCUGGGGAGAGGCUCCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAACCUUGUACCAGGCAGCCCGACCCUGACCUAAAGUAAAUUCCUAGGAGAACUGUUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGAA
.....................(.(...........(..).....................)).......................((.................................).(.....................(.(...(....)...)).....................))....
>AACN011006597.1/519-327
AUGGUCUGCGGAAAGGCUCCUGUGUGGCCGCACCUGCCCGGGUGUGGGUGCAGCCUUGUACCAGGCAGCCCGAGCCUGACCUAGAGUAAAAUCCCCCGGGGGGGCCCAGUUCCCCCCGGGGUUUGGAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.......................(.(..........................(..).............))...............((.....................................).(.....................(.(...(....)...)).....................).)...
>ABDC01168306.1/9156-8969
AUGGUCUGGGGAAAGGCUUCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCUGACCCUGACCUAAAGUAAAUUCUCAGGAGAAAGUCUUACCUGGGUUUUAAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
...............................................(.(.......(..).......))...............((.................................).(.....................(.(...(....)...)).....................))....
>AAIY01323550.1/4949-5132
UCGGUCUGGGGAACGGCUUCUGUGUGGCUGGACCCGCCCAGCAGUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUCGGGGCGCUCCCCUGGGCUUGAAACUUGCAGUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUGUAUGCUACUGCAAACAGGA
...............................................(.(.......(..).......))..............((...............................).(....................(.(...(....)...))....................)).....
>AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
..........................................(.(...........(..)...........))..........((...................................).(....................(.(...(....)...))....................)).....
>AAYZ01114058.1/190-377
AUGGUCUGGGAACCGGCUCCUGUGUCGUUGCACCUGCCGGCGGUGGGCGCAGCACCGAUACCAGGCAGCCCGACCCUGACCUAAAGUGAAGGCCCAGGGCGACGACAGCCCCAGGGUUGACUUUGCAGUAAACAGGUGUGAGCAUUCUAGCAGCCGCUUGAUGGUCAUGUAUUAUACUGCAAACAGGC
.....................(.(......................(..)..........)).......................((................................).(......................(.(...(....)...)).....................))....
>AALT01483174.1/2240-2058
CUGGUCUGGCGAAAGGCUCCCGUGUGUCGCCUCGCAGUGUGGGUGCGGCCUCGUACCGGGCAGCGUGACCCUGACCUACAGCAAACGCCCCAGAGCCCAAGGGCCUCCCGGGGCGCGUCUGCAGUAACAGGUGUGAGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCACACAGAA
....................................(.(.............(..).............)).........(.(................................).(.....................(.(...(....)...)).....................))....
>AANG01169155.1/5677-5865
AUGGUCUGGGGAGAGGCUCCUGUGUUGCUGAACCUGCCGGCUUGCGGGUGCAGCCUUGUAACCAGACAGCCCGACCCUGACCUAAAGUAAAUUCCCGGGAGCAAGUUUUUCCUGGGGUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.......................(.(..........................(..).........)).................(..(.................................).(.....................(.(...(....)...)).....................).)...

>ABDC01227248.1/65-248
AUGGUCUGGGGAAAGGCUCCUGUGUUGUUGAACCCGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGAAAAUUCCCAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
..................................................................................................................................................(....)................................
........................................(.(...............................))......................................................................(....)................................
........................................(.(...............................))................................................................(.(...(....)...))...........................
........................................(.(..............(..).............))................................................................(.(...(....)...))...........................
...............................................(.(.......(..).......))...............((.............................).(.....................(.(...(....)...)).....................))....
>AALT01483174.1/2240-2058
CUGGUCUGGCGAAAGGCUCCCGUGUGUCGCCUCGCAGUGUGGGUGCGGCCUCGUACCGGGCAGCGUGACCCUGACCUACAGCAAACGCCCCAGAGCCCAAGGGCCUCCCGGGGCGCGUCUGCAGUAACAGGUGUGAGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCACACAGAA
.................................................................................................................................................(....)................................
....................................(.(..............................))..........................................................................(....)................................
....................................(.(..............................))....................................................................(.(...(....)...))...........................
....................................(.(.............(..).............))....................................................................(.(...(....)...))...........................
....................................(.(.............(..).............)).........(.(................................).(.....................(.(...(....)...)).....................))....
>ABDC01168306.1/9156-8969
AUGGUCUGGGGAAAGGCUUCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCUGACCCUGACCUAAAGUAAAUUCUCAGGAGAAAGUCUUACCUGGGUUUUAAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
......................................................................................................................................................(....)................................
...............................................(.(..................))................................................................................(....)................................
...............................................(.(..................))..........................................................................(.(...(....)...))...........................
...............................................(.(.......(..).......))..........................................................................(.(...(....)...))...........................
...............................................(.(.......(..).......))...............((.................................).(.....................(.(...(....)...)).....................))....
>CU655873.22/179924-180111
AUGGUCUUGGGGAGAGGCUCCUGUGUUGUUGAGCCUGCCCCGUUGUGGGUGCAACCUUGUACCAGGUAGCCCGACCCUGACCUAAAGUAAAUUCCCAGGAGAGUUGAUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAAAA
......................................................................................................................................................(....)................................
.........................................(.(...............................)).........................................................................(....)................................
.........................................(.(...............................))...................................................................(.(...(....)...))...........................
.........................................(.(..............(..).............))...................................................................(.(...(....)...))...........................
................................................(.(.......(..).......))...............((................................).(.....................(.(...(....)...)).....................))....
>AANU01180104.1/11905-11720
AUGGUCUCGGGAAAGGCUCCUGUGUUGUUGAACCUGCCAAUUGUGGGUGCAGCGUUGUACCAGGCAGCCCAACCCUGACCUACAGUAAAUUCCCGGGAGAAGGCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGGUGAUCAUGUAUGAUACUGCAAACAGGA
....................................................................................................................................................(....)................................
.......................................(.(...............................)).........................................................................(....)................................
.......................................(.(...............................))...................................................................(.(...(....)...))...........................
.......................................(.(..............(..).............))...................................................................(.(...(....)...))...........................
.......................................(.(..............(..).............)).........((................................).(.....................(.(...(....)...)).....................))....
>AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
.....................................................................................................................................................(....)................................
..........................................(.(..........................))............................................................................(....)................................
..........................................(.(..........................))......................................................................(.(...(....)...))...........................
..........................................(.(...........(..)...........))......................................................................(.(...(....)...))...........................
..........................................(.(...........(..)...........))..........((...................................).(....................(.(...(....)...))....................)).....
>AANG01169155.1/5677-5865
AUGGUCUGGGGAGAGGCUCCUGUGUUGCUGAACCUGCCGGCUUGCGGGUGCAGCCUUGUAACCAGACAGCCCGACCCUGACCUAAAGUAAAUUCCCGGGAGCAAGUUUUUCCUGGGGUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.......................................................................................................................................................(....)................................
.......................(.(.......................................))....................................................................................(....)................................
.......................(.(.......................................))..............................................................................(.(...(....)...))...........................
.......................(.(..........................(..).........))..............................................................................(.(...(....)...))...........................
.......................(.(..........................(..).........)).................(..(.................................).(.....................(.(...(....)...)).....................).)...
>AJ609486.1/1-187
ACGGUCUGGGGAAAGGCUCCUGUGUUGUUGAGCCUGCCAAGUUGUGGGUGCAGCAUGGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCGGAAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
.....................................................................................................................................................(....)................................
........................................(.(...............................)).........................................................................(....)................................
........................................(.(...............................))...................................................................(.(...(....)...))...........................
........................................(.(..............(..).............))...................................................................(.(...(....)...))...........................
........................................(.(..............(..).............)).........((................................).(.....................(.(...(....)...)).....................))....
>AAYZ01114058.1/190-377
AUGGUCUGGGAACCGGCUCCUGUGUCGUUGCACCUGCCGGCGGUGGGCGCAGCACCGAUACCAGGCAGCCCGACCCUGACCUAAAGUGAAGGCCCAGGGCGACGACAGCCCCAGGGUUGACUUUGCAGUAAACAGGUGUGAGCAUUCUAGCAGCCGCUUGAUGGUCAUGUAUUAUACUGCAAACAGGC
......................................................................................................................................................(....)................................
.....................(.(....................................))........................................................................................(....)................................
.....................(.(....................................))..................................................................................(.(...(....)...))...........................
.....................(.(......................(..)..........))..................................................................................(.(...(....)...))...........................
.....................(.(......................(..)..........)).......................((................................).(......................(.(...(....)...)).....................))....
>AAIY01323550.1/4949-5132
UCGGUCUGGGGAACGGCUUCUGUGUGGCUGGACCCGCCCAGCAGUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUCGGGGCGCUCCCCUGGGCUUGAAACUUGCAGUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUGUAUGCUACUGCAAACAGGA
..................................................................................................................................................(....)................................
...............................................(.(..................))............................................................................(....)................................
...............................................(.(..................))......................................................................(.(...(....)...))...........................
...............................................(.(.......(..).......))......................................................................(.(...(....)...))...........................
...............................................(.(.......(..).......))..............((...............................).(....................(.(...(....)...))....................)).....
>AAIY01113267.1/1143-960
UAUGAUUGGGGAACAGCUCCUAUGCGGCUUAACCCACCCAGCAUUGGGUGCAGCCUGGUACCAGACAGCCCCACCCUGACCUAGAGCAAAUGCUUGGGGCGCUCCCCUGGGCUUAGAACUUGCACUAACAGGUGUGAACAUUCUAGUAGUAGUUUGAUGAUCAUAUAUGCUACUGCAAACAGGA
..................................................................................................................................................(....)................................
..........................................(.(...........................))........................................................................(....)................................
..........................................(.(...........................))..................................................................(.(...(....)...))...........................
..........................................(.(............(..)...........))..................................................................(.(...(....)...))...........................
..........................................(.(............(..)...........)).........((................................).(....................(.(...(....)...))....................)).....
>AACN011006597.1/519-327
AUGGUCUGCGGAAAGGCUCCUGUGUGGCCGCACCUGCCCGGGUGUGGGUGCAGCCUUGUACCAGGCAGCCCGAGCCUGACCUAGAGUAAAAUCCCCCGGGGGGGCCCAGUUCCCCCCGGGGUUUGGAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGA
...........................................................................................................................................................(....)................................
.......................(.(...........................................))....................................................................................(....)................................
.......................(.(...........................................))..............................................................................(.(...(....)...))...........................
.......................(.(..........................(..).............))..............................................................................(.(...(....)...))...........................
.......................(.(..........................(..).............))...............((.....................................).(.....................(.(...(....)...)).....................).)...
>AAFC03022382.1/31783-31596
GUGGUCUGGGGAGAGGCUCCUGUGUUGUUGAACCUGCCCAGUUGUGGGUGCAACCUUGUACCAGGCAGCCCGACCCUGACCUAAAGUAAAUUCCUAGGAGAACUGUUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGAA
......................................................................................................................................................(....)................................
.....................(.(....................................))........................................................................................(....)................................
.....................(.(....................................))..................................................................................(.(...(....)...))...........................
.....................(.(...........(..).....................))..................................................................................(.(...(....)...))...........................
.....................(.(...........(..).....................)).......................((.................................).(.....................(.(...(....)...)).....................))....
>AALT01276097.1/1207-1031
CUGGUCUGGGGAAAGGCUCCCGUGUGCUGGCCCGCAGUGCGGGUGCGGCCUUGUACCGGGCAGCACAACCUUGACCUACAGCAAGCGCCAGGGAGCAGUGUCUCCCAGCGCAUCUGCAGUAACAGGUGAGACCAUCCUAGCAGCAGAUUGAUGAUCAAAAUGAUACUGCACACAGAA
....................................................................................................................(....).......................................................
..........................................(.(..................))...................................................(....).......................................................
....................................(.(..............................))...............................................................(.(...(....)...))..........................
....................................(.(.............(..).............))...............................................................(.(...(....)...))..........................
>AAFR03028999.1/47437-47616
AUGGUCUGAAAAAAGGCUACUGUGUGGUUGAACCCCAGAAACCUGGGUGCAGCCCUGUACCAGUUAGCCUGACUUUGACCUAGAGUAAAUUCCCAGGAAAAAUGGGAUUUUAAUUUUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUAAUACUGCAAACAAUA
..............................................................................................................................................(....)................................
.......................(.(...........................)).......................................................................................(....)................................
.......................(.(...........................)).................................................................................(.(...(....)...))...........................
(.(................................................(..)........................)).......................................................(.(...(....)...))...........................
>AC093157.2/150637-150823
AUGGUCUUGGGAAAGGCUCCUGUGUUGUUGAACCUGCUCAGUUGUGGGUGCAGCCUUGUACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGGAAAAGUCUUUCCUAGGUUGUGAAUUUGCAGUAAUAGGUGUGUGCAUCCUAGCAGCAGUUUGAUGAUCAUGUAUGAAACUGCAAACAGGA
.....................................................................................................................................................(....)................................
........................................(.(...............................)).........................................................................(....)................................
........................................(.(...............................))...................................................................(.(...(....)...))...........................
........................................(.(..............(..).............))...................................................................(.(...(....)...))...........................
>AAQR03091190.1/6640-6463
ACAGUCUGGGGCAAGGCUCCUGAGUUGCUGCAUCUGCCCAGCUGCAGGUUCAGCUUUGUACCAGGAAGCCCAACGUUAACAUAAAUUCCCAGAAGUCUUUCCUGCAUCAGAAUCUGCAGUAACAGGUGUGAGCAUUCUAGCAGCAGAUUGAUGAUCAUGUAUUAUACCGUACACAGGA
............................................................................................................................................(....)................................
.......................(.(.................................))...............................................................................(....)................................
.......................(.(.................................)).........................................................................(.(...(....)...))...........................
.......................(.(.........(..)....................)).........................................................................(.(...(....)...))...........................
>AANU01219929.1/5530-5716
AUGGCCUUGGGAAAGGCUCCUGUGUUGUUGAACCUGCUCAGUUGUGGGUGCAGCCUUGCACCAGGCAGCCCAACCCUGCCCUAAAGUAAAUUUCCAGGAAAAGUCUUUCCUGGGUUGUGAAUCUGCAGUAACAGGUGUGCACAUCCUAGCAGCAGUUUGAUGAUCAUGGAUGAAACUGCAAACAGGA
.....................................................................................................................................................(....)................................
...............................................(.(..................))...............................................................................(....)................................
...............................................(.(..................)).........................................................................(.(...(....)...))...........................
...............................................(.(.......(..).......)).........................................................................(.(...(....)...))...........................
>AAWZ02009180.1/36450-36265
GUGGGCUGGGAAAUGGUUACUGUGUAGCUGGACUUCCUGAGACCCAGCCUUAUACCUGCUAACCUGAACCUUGCCCUAGAUAAAAAAGAAAACUGGCACACUCCUUCCUGGGGUCUGCCCUAUGCAGUAGCAGGUGUGAACAUUCUACCAGUAUUUUGAUGAUCAUGUAUGAUACUGCAUACACGU
....................................................................................................................................................(....)................................
.....................(.(..............................).)...........................................................................................(....)................................
.....................(.(..............................).).....................................................................................(.(...(....)...))...........................
>AAIY01302780.1/1279-1446
ACGGUCUGGGGACGGCUCCUGCAUGGCUGGACCCGCCCAGCAGUGGGUGCAGUCCCACCCUGACCUAGAGCAAAUGCUGGGGUGCUCCCCUGGGCUUGAAACUUGCAGUAACAGGUGUGAACAUUCUAGUAAGUAGUUUGAUGAUCAUGUAUGCUACUGCAAACAGGG
........................................(....)..........................................................................................................................
...(.(.................................)).....................................................................................(....)....................................
...(.(.................................))..................................................................................(.((....)...)....)...........................
>AL627205.12/140769-140961
ACGGUCUGGGAAAAGGCUCCUGUGUGGCUGUACCCGCCCGAGGUGGGUGCAGCCCCGUACCAGACAGCCCGACCUUGACCUAAAGUAAAAUCCCAGAGGAGGAGGAACCUCUUCCCUGGGGUUAGAAUUUGCAGUAACAGGUGUGGACAUCCUAGCAGCAGUUUGGUGGUCAUGUAUGAUACUGCAAACAGGA
...........................................................................................................................................................(....)................................
.....................(.(...............................)....)..............................................................................................(....)................................
.....................(.(...............................)....)........................................................................................(.(...(....)...))...........................
>AL158048.35/50425-50242
AUGGUCUGGGGAAAGGCUCCUAUGUUUUUGAACCUGCCCAGUUGUGGGUGCAAUCUUGCACCAGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGCUGUGGGCAUUCUAGCAGCAGUUCGAUGAUCAUGUAUGGUACUGCAAACAGGA
..................................................................................................................................................(....)................................
........................................(.(...............................))......................................................................(....)................................
........................................(.(...............................))................................................................(.(...(....)...))...........................
>AANN01194312.1/1217-1403
AUGGUCUGUAGAAAGGCUCCUGUGUUGCUGAACUUCUCCAGCAUAGGUGCAGCCUUGUACUAGGCAGCUCAACCCUGACCUAGAGUGUGCCAGGGACUUCAGGUUGCCCUAGGGCUUUGAACUUACAAUAACAGGUGUGAACAUUCUAGCAGCAAUUUGAUGAUAAUGUAUGAUACUGCAAACAAAC
.....................................................................................................................................................(....)................................
......................................................................................(.(..............))............................................(....)................................
......................................................................................(.(..............))......................................(.(...(....)...))...........................
>EU240229.1/1-168
GAGGGCCUGGGGAUGGCUGCUGGCGGCUGUGUCUCAGCCUGGUGCCUGCUGGCCUUACCCGUGCCCCAGAUCAACCUCCAGAGGUCCCCCUGCUGGGUUCCUCCUAUGCAGUAACAGGUGUGAGCAUCCAUGCAGCAUUCUGAUGGUCAUGUAUGAUACUGCACACAA
...................................................................................................................(....)...............................................
............(.(......................................))............................................................(....)...............................................
>AC069157.8/65923-65741
AUGGUCUGGGGAAAGGCUCCUGUGUGGCUGAACCUGCCCAGCUGUGGGUGCAGCCUUGUACCAGGCACCCCAACCCUGACCUAAAGUAAAUUCCCAGGAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGUAACAGGUGUGAACAUUCUAGCGCAGUUUGAUCAUAUAUGAUACUAUAAACAGGA
....................................................................................................(....).............................................................................
.....................(.(...................)).......................................................(....).............................................................................
>AAHX01066807.1/71589-71772
ACGGUCUGGGGAAAGGCUCCUGUGUGGUUGACCCUGCCCUAGGUGGGUGCAGCCCUGUACCAGACAGCCCGACCUUGACCUAAAGUAAAUUCCCGGAGGAGCAUCCUCCCCGGGGUUUGAAUUUGCAGUAACAGGUGUGAGCAUCUUAGCAGUUUGGUGGUCAUGUAUGAUACUGCAAACAGGA
..................................................................................................................................................(....)................................
.....................(.(...................................)).....................................................................................(....)................................
>AAQQ01109564.1/635-815
GUGGUCCGGGGAACGGCGCCUGUGUUGUCGCACCUGCCCAGUGGCCUGUGCAGCCCGUACCAGGCAGCCCCACCCUGACCUAGAGUAAGUCCCGGGGAGCCCUCCCGGGUCGGAAUCUGCAGUAACAGGUGUGAGCACUCUGGGCAGCCGCUUGUGGUCAUGUAUGAUACUGCAAACAGGC
................................................................................................................................................(....)...............................
.....................(.(...................................))...................................................................................(....)...............................
>AAHX01039931.1/4243-4430
AUGGUCUGGGGAAAGGCUCCUUGUGUGGUUGACCCUGCCCGAGGUGGGUGCAGCCCUGUACCAGAUAGCCCGACCUUGACCUAAAGUAAAUUCCCAGAGGCGCAUCCUCCCUGGGGUUAGAAUUUGCAGUAACAGGUGUGAACCUCUCGGUGGCAGUUCAGUGGUCAUGUAUGAUACUGCAAACAGGA
......................................................................................................................................................(....)................................
......................(.(...................................))........................................................................................(....)................................
>AAEX03000900.1/9081-9262
AUGAUCUGAGGAAAGGCUCCUGUGUUGCUGAACCUGGCCUGUAGUGGGCGCAGCCUUGUACCAGGCAGCCAGAGCCUGACCUAAGUCAAUUCCCAGGAUAGUUCUUGGAGUUUGAAUUUGCAAUAACAGGUGUAAACAUUGUAGCAGCAGUUUGAUGAUCAUAUGUGUUAUUGCAAAUAGGA
................................................................................................................................................(....)................................
.....................(.(............................................))..........................................................................(....)................................
>AANN01729317.1/397-213
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGCAUGAGUGCAGCCUUGUACCAGGCAGUCAGACCUUGACCUAGAGUAAGUGCCUGAACAAGUUCUCAUGGGUCUUGGAACUUUCAGUAACAGGUGUGAGUAUUCUAGCAGCAGUUUGGUGAUUAUGUAUGAUACUGCAAACAGGA
...................................................................................................................................................(....)................................
>AAPN01024575.1/1029-1216
GUGGUCAGGAGAAAGGCUGCUGAGUGGUUGAGCCCGGUCAGCCGGGCACGGCCUUGUAGCAGUUGGCCUUGAUCCCCGACCUAGAGUAAACCCCCAGGAAAGCUCCUUUCUGGGAUUUGAACUUUGCAGUAGCAGGUGUGAGCAUUCUAGCAGCAGUUUGAUGAUCAUGUAUGAUACUGCAAACAAGA
......................................................................................................................................................(....)................................
>AC068544.7/102252-102068
AUAGUCUGUGGAAAGGCUACUGUGUUGUUGAACUUGCCCAGCUGUGGGUGCAGCCAUGUACCAGGCAGCCCAAGCCUGACAUAAAGUAAAUUCCCAGGAGAAGUCUUUCCUGGGUUUUGAAUUUGCAGUAACAGGUGUAAGCAUUCCAGCAGCAGUUUGUUGAUCAUGUGAUAUCAGAAAUGCAA
....................................................................................................(....)...............................................................................
>AANU01292006.1/9352-9170
AUGGUCUGGGGAAAGGCUCCUGUGUGGUUGAACCUGCCCAGUUGUGGGUACAGCCUUGUACUGGCAGCCCAACCCUGACCUAAAGUAAAUUCCCAGGAGAAGUCUUUCCUGGGAUUUGAAUUUGCAGCAACAGAUGUGAACAUUCUAGUGGCAGUUUGAUCAUGUAUGAUACUAUAAAUAGGA
...................................................................................................(....)..............................................................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (RGYN) < 0.001 11.7
AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
...................................................................................................1.......................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
2 R(U(N)) < 0.001 2.29
AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
...................................................................................................1.......................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.......
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3 Y(Y(C)) < 0.001 5.15
AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
...................................................................................................1.......................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.......
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4 G(YN)Y < 0.001 3.34
AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
...................................................................................................1.......................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.......
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5 ((N)N(U)) < 0.001 2.42
AANN01153286.1/1817-2003
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
AUGGUCUGGAGAAAGGCUCCUGUGUUGUUGGACCUGCCCAGAGUGGGUGCAGCCUUGUACCAGGCAGCCCGACCCUGACCUAGAGUAAGUGCCUGGGGACAAGUUCUCCCUGGGCUUGGAACUUGCAGUAACAGGUGUGAACAUUCUAGCAGUAGUUUGAUGAUCAUGUAUGAUACUGCAAACAGGG
...................................................................................................1.......................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.......
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ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 .N. (URB) < 0.001 0.625
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).