D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

HOTAIR conserved region 3   (Rfam: RF01906)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
Y(CUC)Y
N(NUC)U
U(RU)A
(ARAY)
((C)A)G
(UYYN)
N(GNN)G
100.0
100.0
94.1
94.1
100.0
100.0
100.0
Y(CUC)Y
N(NUC)U
U(RU)A
(ARAY)
((C)A)G
(UYYN)
N(GNN)G

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.8 %
(± 0.099 %)
Decision tree:

5-fold cross-validation: 95.8 %
(± 6.48 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 95.3 %
(± 6.75 %)
of DQ926657.1/411-315
DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
((..))(((((((((.((((...)))))).)))((...))(((((((((...)))))))))))))(((((((((....))))))(((....))))))
.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567

abstract shape: ()()()()

Number of sequences
Structure ORBs (out of 17) (%)
1 Y(CUC)Y
 17 100.0
>AAQR03076666.1/23108-23204
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUCUCUCUGCCAGGACGUGGUCGUGGCAUUUCUGGUCUUGUAAACACCGGACUCUUUGGGGCCU
...................(...).........................................................................
>AAKN02014967.1/8229-8133
UUAUAAGGAAGGCGACAGUCCUCUGUUUCAGCCUUUCUCUCCAGAAGGACUUGCAGUGGUAUUUCUGGUCUUGUAAACACUGGACUGUAUGGGACUU
...................(...).........................................................................
>ABRO01112174.1/1737-1639
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGCCUUUUUCUCUAGAAGGAAGCAGCAGUGGCAUUUCUGGUCUUGUAAACACUGGACUCGGUGAGACUU
......................................(...)........................................................
>ABRQ01001829.1/8553-8456
UUAUAAGGAAAGCGUGGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGAUGUGGCUGUGGCAUUUCUAGUCUUGUAAACACUGGUCUCUUUGGGAUCU
...................(...)..........................................................................
>AAPY01653817.1/363-266
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGACGUGGCCGUGGCAUUUCUGCUCUUGUAAACACCAGGCUCUUUGGGGCCU
.....................................(...)........................................................
>AACN011070975.1/185-88
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUAGCAUUUCUAGUCUCGUAAACACUGGACUCUUUGGGGCCU
...................(...)..........................................................................
>AAWR02031290.1/184811-184909
UUAUAAGGAAGACGUCGGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUCGGGGCCU
....................(...)..........................................................................
>AAQQ01620880.1/606-508
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCAGAAGGACGCUGGCAGUGGCAUUUCUCAUCUUGUAAACACUGGAUUCUAUGGGACAU
.....................................(...).........................................................
>AAFC03010049.1/159-62
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGAGUUUUAGGGGCCU
...................(...)..........................................................................
>AC116663.1/72317-72412
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCAGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAAUACAGGACUUUUUUUUUU
...................(...)........................................................................
>ABRP01034310.1/2254-2157
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGUCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUGUAAACACUGAACUCUUUGGGGUCU
....................(...).........................................................................
>ABRN01244786.1/827-730
UUAUAAGGAAGGCGUCAGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUUGGGGCCU
...................(...)..........................................................................
>AAHY01125231.1/162411-162314
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAACACAGGACUUUUUUUUUUUU
.....................................(...)........................................................
>AAIY01410415.1/2041-2138
UUAUAAGGAAAGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCGCCAAGACGUGGCCGUAGCAUUGCUGGUCUUGUAAACAUCGAUCUCUUUGGGGCCU
...................(...)..........................................................................
>DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
...................(...).........................................................................
>ABVD01271340.1/2114-2017
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUGUGCCAGGACGUGGCCAUGGCAUUUCUGGGCUUGUAAACACCGGACUCUUUGGGGUCU
...................(...)..........................................................................
>AAGU03007240.1/26328-26425
UUAUAAGGAAAGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGACGUGGCCGUAGCAUUUCUGGACUUGUAAACACCGGUCUCUUUGGGGCCU
...................................(...)..........................................................
2 Y(CUC)Y
N(NUC)U
 16 94.1
>AACN011070975.1/185-88
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUAGCAUUUCUAGUCUCGUAAACACUGGACUCUUUGGGGCCU
...................(...).............(...)........................................................
>AAGU03007240.1/26328-26425
UUAUAAGGAAAGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGACGUGGCCGUAGCAUUUCUGGACUUGUAAACACCGGUCUCUUUGGGGCCU
...................................(...)............................................(...).........
>AC116663.1/72317-72412
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCAGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAAUACAGGACUUUUUUUUUU
...................(...)...........(...)........................................................
>DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
...................(...)..........(...)..........................................................
>AAFC03010049.1/159-62
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGAGUUUUAGGGGCCU
...................(...).............(...)........................................................
>AAQQ01620880.1/606-508
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCAGAAGGACGCUGGCAGUGGCAUUUCUCAUCUUGUAAACACUGGAUUCUAUGGGACAU
.....................................(...)..........................(...)..........................
>ABRQ01001829.1/8553-8456
UUAUAAGGAAAGCGUGGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGAUGUGGCUGUGGCAUUUCUAGUCUUGUAAACACUGGUCUCUUUGGGAUCU
...................(...).............(...)........................................................
>AAKN02014967.1/8229-8133
UUAUAAGGAAGGCGACAGUCCUCUGUUUCAGCCUUUCUCUCCAGAAGGACUUGCAGUGGUAUUUCUGGUCUUGUAAACACUGGACUGUAUGGGACUU
...................(...)..........................................(...)..........................
>ABRP01034310.1/2254-2157
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGUCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUGUAAACACUGAACUCUUUGGGGUCU
....................(...).........(...)...........................................................
>AAQR03076666.1/23108-23204
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUCUCUCUGCCAGGACGUGGUCGUGGCAUUUCUGGUCUUGUAAACACCGGACUCUUUGGGGCCU
...................(...)............(...)........................................................
>ABRN01244786.1/827-730
UUAUAAGGAAGGCGUCAGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUUGGGGCCU
...................(...).............(...)........................................................
>AAPY01653817.1/363-266
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGACGUGGCCGUGGCAUUUCUGCUCUUGUAAACACCAGGCUCUUUGGGGCCU
.....................................(...)....................(...)...............................
>AAIY01410415.1/2041-2138
UUAUAAGGAAAGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCGCCAAGACGUGGCCGUAGCAUUGCUGGUCUUGUAAACAUCGAUCUCUUUGGGGCCU
...................(...)...........(...)..........................................................
>ABRO01112174.1/1737-1639
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGCCUUUUUCUCUAGAAGGAAGCAGCAGUGGCAUUUCUGGUCUUGUAAACACUGGACUCGGUGAGACUU
......................................(...)....................(...)...............................
>AAWR02031290.1/184811-184909
UUAUAAGGAAGACGUCGGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUCGGGGCCU
....................(...).............(...)........................................................
>AAHY01125231.1/162411-162314
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAACACAGGACUUUUUUUUUUUU
.....................................(...)....................(...)...............................
3 Y(CUC)Y
N(NUC)U
U(RU)A
 14 82.4
>AAKN02014967.1/8229-8133
UUAUAAGGAAGGCGACAGUCCUCUGUUUCAGCCUUUCUCUCCAGAAGGACUUGCAGUGGUAUUUCUGGUCUUGUAAACACUGGACUGUAUGGGACUU
.(..)..............(...)..........................................(...)..........................
>ABRQ01001829.1/8553-8456
UUAUAAGGAAAGCGUGGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGAUGUGGCUGUGGCAUUUCUAGUCUUGUAAACACUGGUCUCUUUGGGAUCU
.(..)..............(...).............(...)........................................................
>AAPY01653817.1/363-266
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGACGUGGCCGUGGCAUUUCUGCUCUUGUAAACACCAGGCUCUUUGGGGCCU
.(..)................................(...)....................(...)...............................
>AAQQ01620880.1/606-508
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCAGAAGGACGCUGGCAGUGGCAUUUCUCAUCUUGUAAACACUGGAUUCUAUGGGACAU
.(..)................................(...)..........................(...)..........................
>AAQR03076666.1/23108-23204
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUCUCUCUGCCAGGACGUGGUCGUGGCAUUUCUGGUCUUGUAAACACCGGACUCUUUGGGGCCU
.(..)..............(...).....................................(...)...............................
>AC116663.1/72317-72412
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCAGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAAUACAGGACUUUUUUUUUU
.(..)..............(...)...........(...)........................................................
>ABRO01112174.1/1737-1639
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGCCUUUUUCUCUAGAAGGAAGCAGCAGUGGCAUUUCUGGUCUUGUAAACACUGGACUCGGUGAGACUU
.(..).................................(...)....................(...)...............................
>ABRP01034310.1/2254-2157
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGUCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUGUAAACACUGAACUCUUUGGGGUCU
.(..)...............(...).........(...)...........................................................
>AAIY01410415.1/2041-2138
UUAUAAGGAAAGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCGCCAAGACGUGGCCGUAGCAUUGCUGGUCUUGUAAACAUCGAUCUCUUUGGGGCCU
.(..)..............(...)...........(...)..........................................................
>AAHY01125231.1/162411-162314
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAACACAGGACUUUUUUUUUUUU
.(..)................................(...)....................(...)...............................
>AAFC03010049.1/159-62
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGAGUUUUAGGGGCCU
.(..)..............(...).............(...)........................................................
>AACN011070975.1/185-88
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUAGCAUUUCUAGUCUCGUAAACACUGGACUCUUUGGGGCCU
.(..)..............(...).............(...)........................................................
>DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.(..)..............(...)..........(...)..........................................................
>AAWR02031290.1/184811-184909
UUAUAAGGAAGACGUCGGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUCGGGGCCU
.(..)...............(...).............(...)........................................................
4 Y(CUC)Y
N(NUC)U
U(RU)A
(ARAY)
 12 70.6
>AAPY01653817.1/363-266
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGACGUGGCCGUGGCAUUUCUGCUCUUGUAAACACCAGGCUCUUUGGGGCCU
.(..)................................(...)....................(...).......(....)..................
>AC116663.1/72317-72412
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCAGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAAUACAGGACUUUUUUUUUU
.(..)..............(...)...........(...)..................................(....)................
>AAQQ01620880.1/606-508
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCAGAAGGACGCUGGCAGUGGCAUUUCUCAUCUUGUAAACACUGGAUUCUAUGGGACAU
.(..)................................(...)..........................(...)..(....)..................
>AACN011070975.1/185-88
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUAGCAUUUCUAGUCUCGUAAACACUGGACUCUUUGGGGCCU
.(..)..............(...).............(...)................................(....)..................
>AAQR03076666.1/23108-23204
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUCUCUCUGCCAGGACGUGGUCGUGGCAUUUCUGGUCUUGUAAACACCGGACUCUUUGGGGCCU
.(..)..............(...).....................................(...).......(....)..................
>AAWR02031290.1/184811-184909
UUAUAAGGAAGACGUCGGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUCGGGGCCU
.(..)...............(...).............(...)................................(....)..................
>ABRO01112174.1/1737-1639
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGCCUUUUUCUCUAGAAGGAAGCAGCAGUGGCAUUUCUGGUCUUGUAAACACUGGACUCGGUGAGACUU
.(..).................................(...)....................(...).......(....)..................
>AAIY01410415.1/2041-2138
UUAUAAGGAAAGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCGCCAAGACGUGGCCGUAGCAUUGCUGGUCUUGUAAACAUCGAUCUCUUUGGGGCCU
.(..)..............(...)...........(...).....(....)...............................................
>ABRP01034310.1/2254-2157
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGUCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUGUAAACACUGAACUCUUUGGGGUCU
.(..)...............(...).........(...)...................................(....)..................
>DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.(..)..............(...)..........(...)..................................(....)..................
>AAHY01125231.1/162411-162314
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAACACAGGACUUUUUUUUUUUU
.(..)................................(...)....................(...).......(....)..................
>ABRQ01001829.1/8553-8456
UUAUAAGGAAAGCGUGGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGAUGUGGCUGUGGCAUUUCUAGUCUUGUAAACACUGGUCUCUUUGGGAUCU
.(..)..............(...).............(...)................................(....)..................
5 Y(CUC)Y
N(NUC)U
U(RU)A
(ARAY)
((C)A)G
 8 47.1
>AC116663.1/72317-72412
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCAGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAAUACAGGACUUUUUUUUUU
.(..).......((.....(...)....).)....(...)..................................(....)................
>AACN011070975.1/185-88
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUAGCAUUUCUAGUCUCGUAAACACUGGACUCUUUGGGGCCU
.(..).......((.....(...)....).)..(...)....................................(....)..................
>AAIY01410415.1/2041-2138
UUAUAAGGAAAGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCGCCAAGACGUGGCCGUAGCAUUGCUGGUCUUGUAAACAUCGAUCUCUUUGGGGCCU
.(..).......((.....(...)....).)....(...).....(....)...............................................
>ABRP01034310.1/2254-2157
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGUCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUGUAAACACUGAACUCUUUGGGGUCU
.(..).......((......(...)....).)..(...)...................................(....)..................
>DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.(..).......((.....(...)....).)...(...)..................................(....)..................
>ABRQ01001829.1/8553-8456
UUAUAAGGAAAGCGUGGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGAUGUGGCUGUGGCAUUUCUAGUCUUGUAAACACUGGUCUCUUUGGGAUCU
.(..).......((.....(...)....).)......(...)................................(....)..................
>AAWR02031290.1/184811-184909
UUAUAAGGAAGACGUCGGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUCGGGGCCU
.(..).......((......(...)....).)......(...)................................(....)..................
>AAHY01125231.1/162411-162314
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAACACAGGACUUUUUUUUUUUU
.(..).......((.....(...)....).)......(...)................................(....)..................
6 Y(CUC)Y
N(NUC)U
U(RU)A
(ARAY)
((C)A)G
(UYYN)
 7 41.2
>AAWR02031290.1/184811-184909
UUAUAAGGAAGACGUCGGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUCGGGGCCU
.(..).......((......(...)....).)......(...)................................(....).......(....).....
>ABRP01034310.1/2254-2157
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGUCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUGUAAACACUGAACUCUUUGGGGUCU
.(..).......((......(...)....).)..(...)...................................(....).......(....).....
>DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.(..).......((.....(...)....).)...(...)..................................(....).......(....).....
>AAHY01125231.1/162411-162314
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAACACAGGACUUUUUUUUUUUU
.(..).......((.....(...)....).)......(...)................................(....)........(....)....
>AC116663.1/72317-72412
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCAGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAAUACAGGACUUUUUUUUUU
.(..).......((.....(...)....).)....(...)..................................(....).......(....)...
>AACN011070975.1/185-88
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUAGCAUUUCUAGUCUCGUAAACACUGGACUCUUUGGGGCCU
.(..).......((.....(...)....).)..(...)....................................(....).......(....).....
>ABRQ01001829.1/8553-8456
UUAUAAGGAAAGCGUGGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGAUGUGGCUGUGGCAUUUCUAGUCUUGUAAACACUGGUCUCUUUGGGAUCU
.(..).......((.....(...)....).)......(...)................................(....).......(....).....
7 Y(CUC)Y
N(NUC)U
U(RU)A
(ARAY)
((C)A)G
(UYYN)
N(GNN)G
 6 35.3
>ABRQ01001829.1/8553-8456
UUAUAAGGAAAGCGUGGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGAUGUGGCUGUGGCAUUUCUAGUCUUGUAAACACUGGUCUCUUUGGGAUCU
.(..).......((.....(...)....).)......(...)....(...).......................(....).......(....).....
>ABRP01034310.1/2254-2157
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGUCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUGUAAACACUGAACUCUUUGGGGUCU
.(..).......((......(...)....).)..(...)...........(...)...................(....).......(....).....
>AC116663.1/72317-72412
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCAGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAAUACAGGACUUUUUUUUUU
.(..).......((.....(...)....).)....(...)..............(...)...............(....).......(....)...
>DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.(..).......((.....(...)....).)...(...).........(...)....................(....).......(....).....
>AAWR02031290.1/184811-184909
UUAUAAGGAAGACGUCGGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUCGGGGCCU
.(..).......((......(...)....).)......(...).......(...)....................(....).......(....).....
>AACN011070975.1/185-88
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUAGCAUUUCUAGUCUCGUAAACACUGGACUCUUUGGGGCCU
.(..).......((.....(...)....).)..(...)...........(...)....................(....).......(....).....

>ABRQ01001829.1/8553-8456
UUAUAAGGAAAGCGUGGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGAUGUGGCUGUGGCAUUUCUAGUCUUGUAAACACUGGUCUCUUUGGGAUCU
...................(...)..........................................................................
...................(...).............(...)........................................................
.(..)..............(...).............(...)........................................................
.(..)..............(...).............(...)................................(....)..................
.(..).......((.....(...)....).)......(...)................................(....)..................
.(..).......((.....(...)....).)......(...)................................(....).......(....).....
.(..).......((.....(...)....).)......(...)....(...).......................(....).......(....).....
>AACN011070975.1/185-88
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUAGCAUUUCUAGUCUCGUAAACACUGGACUCUUUGGGGCCU
...................(...)..........................................................................
...................(...).............(...)........................................................
.(..)..............(...).............(...)........................................................
.(..)..............(...).............(...)................................(....)..................
.(..).......((.....(...)....).)..(...)....................................(....)..................
.(..).......((.....(...)....).)..(...)....................................(....).......(....).....
.(..).......((.....(...)....).)..(...)...........(...)....................(....).......(....).....
>AAWR02031290.1/184811-184909
UUAUAAGGAAGACGUCGGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUCGGGGCCU
....................(...)..........................................................................
....................(...).............(...)........................................................
.(..)...............(...).............(...)........................................................
.(..)...............(...).............(...)................................(....)..................
.(..).......((......(...)....).)......(...)................................(....)..................
.(..).......((......(...)....).)......(...)................................(....).......(....).....
.(..).......((......(...)....).)......(...).......(...)....................(....).......(....).....
>AC116663.1/72317-72412
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCAGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAAUACAGGACUUUUUUUUUU
...................(...)........................................................................
...................(...)...........(...)........................................................
.(..)..............(...)...........(...)........................................................
.(..)..............(...)...........(...)..................................(....)................
.(..).......((.....(...)....).)....(...)..................................(....)................
.(..).......((.....(...)....).)....(...)..................................(....).......(....)...
.(..).......((.....(...)....).)....(...)..............(...)...............(....).......(....)...
>ABRP01034310.1/2254-2157
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGUCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUGUAAACACUGAACUCUUUGGGGUCU
....................(...).........................................................................
....................(...).........(...)...........................................................
.(..)...............(...).........(...)...........................................................
.(..)...............(...).........(...)...................................(....)..................
.(..).......((......(...)....).)..(...)...................................(....)..................
.(..).......((......(...)....).)..(...)...................................(....).......(....).....
.(..).......((......(...)....).)..(...)...........(...)...................(....).......(....).....
>DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
...................(...).........................................................................
...................(...)..........(...)..........................................................
.(..)..............(...)..........(...)..........................................................
.(..)..............(...)..........(...)..................................(....)..................
.(..).......((.....(...)....).)...(...)..................................(....)..................
.(..).......((.....(...)....).)...(...)..................................(....).......(....).....
.(..).......((.....(...)....).)...(...).........(...)....................(....).......(....).....
>AAHY01125231.1/162411-162314
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGGAAGGACUUAGCGCUGGCAUUUCUGGUCUUGUAAACACAGGACUUUUUUUUUUUU
.....................................(...)........................................................
.....................................(...)....................(...)...............................
.(..)................................(...)....................(...)...............................
.(..)................................(...)....................(...).......(....)..................
.(..).......((.....(...)....).)......(...)................................(....)..................
.(..).......((.....(...)....).)......(...)................................(....)........(....)....
>AAIY01410415.1/2041-2138
UUAUAAGGAAAGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCGCCAAGACGUGGCCGUAGCAUUGCUGGUCUUGUAAACAUCGAUCUCUUUGGGGCCU
...................(...)..........................................................................
...................(...)...........(...)..........................................................
.(..)..............(...)...........(...)..........................................................
.(..)..............(...)...........(...).....(....)...............................................
.(..).......((.....(...)....).)....(...).....(....)...............................................
>AAQR03076666.1/23108-23204
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUCUCUCUGCCAGGACGUGGUCGUGGCAUUUCUGGUCUUGUAAACACCGGACUCUUUGGGGCCU
...................(...).........................................................................
...................(...)............(...)........................................................
.(..)..............(...).....................................(...)...............................
.(..)..............(...).....................................(...).......(....)..................
>ABRO01112174.1/1737-1639
UUAUAAGGAAGGCGUCGGGUCCUCCAUUUCAGCCUUUUUCUCUAGAAGGAAGCAGCAGUGGCAUUUCUGGUCUUGUAAACACUGGACUCGGUGAGACUU
......................................(...)........................................................
......................................(...)....................(...)...............................
.(..).................................(...)....................(...)...............................
.(..).................................(...)....................(...).......(....)..................
>AAPY01653817.1/363-266
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGACGUGGCCGUGGCAUUUCUGCUCUUGUAAACACCAGGCUCUUUGGGGCCU
.....................................(...)........................................................
.....................................(...)....................(...)...............................
.(..)................................(...)....................(...)...............................
.(..)................................(...)....................(...).......(....)..................
>AAQQ01620880.1/606-508
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCCAGAAGGACGCUGGCAGUGGCAUUUCUCAUCUUGUAAACACUGGAUUCUAUGGGACAU
.....................................(...).........................................................
.....................................(...)..........................(...)..........................
.(..)................................(...)..........................(...)..........................
.(..)................................(...)..........................(...)..(....)..................
>AAKN02014967.1/8229-8133
UUAUAAGGAAGGCGACAGUCCUCUGUUUCAGCCUUUCUCUCCAGAAGGACUUGCAGUGGUAUUUCUGGUCUUGUAAACACUGGACUGUAUGGGACUU
...................(...).........................................................................
...................(...)..........................................(...)..........................
.(..)..............(...)..........................................(...)..........................
>AAFC03010049.1/159-62
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGAGUUUUAGGGGCCU
...................(...)..........................................................................
...................(...).............(...)........................................................
.(..)..............(...).............(...)........................................................
>ABRN01244786.1/827-730
UUAUAAGGAAGGCGUCAGUCCUCCAUUUCAGCCUUUCUUUCUGCCAGGACGUGGCCGUGGCAUUUCUGGUCUUGUAAACACUGGACUCUUUGGGGCCU
...................(...)..........................................................................
...................(...).............(...)........................................................
>AAGU03007240.1/26328-26425
UUAUAAGGAAAGCGUCGGUCCUCCAUUUCAGCCUUUCUCUCUGCCAGGACGUGGCCGUAGCAUUUCUGGACUUGUAAACACCGGUCUCUUUGGGGCCU
...................................(...)..........................................................
...................................(...)............................................(...).........
>ABVD01271340.1/2114-2017
UUAUAAGGAAGGCGUCGGUCCUCCAUUUCAGCCUUUCUCUGUGCCAGGACGUGGCCAUGGCAUUUCUGGGCUUGUAAACACCGGACUCUUUGGGGUCU
...................(...)..........................................................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 Y(CUC)Y < 0.001 36.1
DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
2 N(NUC)U < 0.001 18.5
DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
3 (ARAY) < 0.001 13
DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
4 U(RU)A < 0.001 1.51
DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
5 (UYYN) < 0.001 2.35
DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
6 ((C)A)G < 0.001 1.39
DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
7 N(GNN)G < 0.001 2.36
DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 .UUUCU. < 0.001 154
DQ926657.1/411-315
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
UUAUAAGGAAGGCGCCGGUCCUCCAUUUCAGCCUUUUCUCUGCCAGGACGCGGCCGUGGCAUUUCUGGUCUUGUAAACAUCAGACUCUUUGGGGCCU
.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).