D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

Lysine riboswitch (Rfam: RF00168)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

(.RA.)
N(RR(A))
N(R(Y))
(.YNA.)

100.0
95.7
97.9
97.9

(.RA.)
N(R(Y))

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 99 %
(± 0.144 %)

Decision tree:

5-fold cross-validation: 86.9 %
(± 3.66 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 88 %
(± 5.35 %)

of CP000569.1/516240-516411

CP000569.1/516240-516411

ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG
(((((((((((((..(((((((((((((.(((((((((((((((((..))))))))))))))))))))))))))))))(..(((((((((((.(...)))))))))))((((((((((.(((..)))))))))))))(((((((((..))))))))))))))))))))))))
...................................................................................................1........................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7..
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abstract shape: `(()(()()()))`

					Number of sequences
	Structure	ORBs			(out of 47)	(%)
1		(.RA.)			47	100.0
>AE016827.1/1325416-1325239 UACACAUGUAGAGGUGCGAAUAUUAUAAGUAUUUUUCCAGAGUGGAUAACAAUGAAGGAAAUUGAAAGGAAUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAACUGGUUGGUAACGUCACCGAAAGGAACGUUACUGCCAUAGUCAUUUUUGAUUAACUAUGGAGCGCUACUCGUGGG .........................................................................................................................(..)..................................................... >BA000037.2/1373591-1373770 UAUCGACGUAGAGGCGCAAUGGUAAAGAGUAACUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGAAAGGUAUCCAUUGCCGAAGUGAAUUGCAUAUCAAAGCAGUUUGCUGGGGUUGCAUCCGAAAGGAACAACACUGCCAUAGUAUUUAAUGUAUAACUAUGGAGCGCUACUGUAGGU ...........................................................................................................................(..)..................................................... >M93419.1/332-511 AGUGAAGAUAGAGGUGCGAACUUCAUCAGUAAAAGCUUGGAGAAGAAUGAGCUUCAAUGAAAAGCUUUGAAAGGGAACGUUCGCCGAAGUGAAGAAAAACUCAUUUUUUUCUUUGCUGGUCCUGCAUUUAAGAGAUGCCGGAUUGUCAAGGCGGUGCCGCCUUGGAGAGCUAUCUCACUG ................................................................................................................................(...)............................................... >CP000569.1/516240-516411 ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG .........................................................................................................................(..)............................................... >AAKK02000085.1/12844-12662 UGUUGCCGUAGAGGCGCGGUCUCGAAGAGUAGCUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGGAAGGCGAAGAUUGCCGAAGUAAGUAACUCAUCAAAGUUACUUGCUGGGGUUGUAUCUGAAAGGAACAACACUGCCAUAGUAUAUAUUCACAUUAAACUAUGGAGCGCUACUGUAGGG ........................................................................(...).......................................................................................................... >AE017143.1/992934-993104 ACAAAUUGUAGAGGUGCAAAUCCGAUAAGUAUUUCUUCUGAGUGGAAAGCGAUGAAGGGGAAGGAAAGGCGUAUUUGCCGAAAUCAAUUAAGCGUCAUCUUAGUUGGUUGGGGUCGUUGCCGAAAGGGACGACACUGUCGUAAUUCAAUAUUACGGAGUGCUACUAUUAGG .........................................................................................................................(..).............................................. >CP000046.1/1759610-1759435 AAUUGAGUUAGAGGUUGCAUGUUUAAUUAGUAACUUGUCAGAAGUAUUUAUGGUACAUAAGUUGAACAAGUGAAAGGUAAAGAUGCCGAAAUAGAUAUAAACCAUAAAUUAUAUCUAUUGGGACAGUUUUCGAAUAGGAACUGUACUGUCACAGAAUGUGAUGUGCUACCUUAUAU ........................................................................................................................................................(...)................... >AF270308.1/2156-2331 AAUAGAGUUAGAGGUUGCAUUAUUAAUGACUAACUUAUCAGAAGUCGUAUGGGACAUGUGUUGAAUAAGUGAAAGGUAAUAAUGCCGAAAUGAUGUUAUUUCCAUAAAUUAGCAUUGUUGGGACAACUUUCGAAUAGAAGUUGUACUGUCACUUUAUGUGAUGUGCUACCUUAUAU ...................................................................................................................................(...)........................................ >AM263198.1/783761-783564 UGGUGAGGUAGAGGUUGCAAGAUUCACAAGUAAUUUUUUAGAAGCGAAACAAAGACGCUGAUGACAAAGAAUGAACAGGAUGAUUGCCGAAGUGACUAUUUUCUCUUUGUUUAGAAAUAGUUGUUGGGACAGUUUCCUAAAGGAGCUGGACUGCUAUAAGAAUUUGUCGAAAUUUCUUAUAGGUGUGCUAUCUGACAA ........................................................................(..).......................................................................................................................... >AAWP01000069.1/5541-5721 UAUUGCCGUAGAGGUGCAGUCUCGAAGAGUAGCUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGGAAGGCGAGGAUUGCCGAAGUAGGUGGCCUAUCGAAGCCACUUGCUGGGGUUGUCUCUGAAAGGAACAACACUGCCAUAGUAUAUUUACAUUAAACUAUGGAGCGCUACUGUAGGG ...........................................................................................................................(..)...................................................... >J03294.1/2297-2476 GGUGAAGAUAGAGGUGCGAACUUCAAGAGUAUGCCUUUGGAGAAAGAUGGAUUCUGUGAAAAAGGCUGAAAGGGGAGCGUCGCCGAAGCAAAUAAAACCCCAUCGGUAUUAUUUGCUGGCCGUGCAUUGAAUAAAUGUAAGGCUGUCAAGAAAUCAUUUUCUUGGAGGGCUAUCUCGUUG ................................................................................................................................(...)............................................... >ABCF01000065.1/4547-4725 AGUGGUGAUAGAGGUGCGGACUUUCAUCAGUAGAUGCUUCGAGGAGUAUGGGCUCUUAUGAAGGGUAUCGAAAGGGAAAUUCGCCGAAGUGGAAGCAGGCUCAUAUCUGUUUGCGCUGGUUCUGUGUUUAAGAGAUGCAGGAUUGUCAAGAUUAACAGUCUUGGAGAGCUAUCUCACGU ........................................................................................................................................................(...)...................... >AE004439.1/1026545-1026371 UACUUGUGUAGAGGAGCGAUCACUAUAAGUAUUUUUUCUGAGUGGAUAACGAAGAGGAAAAAGGAAAGGAGUGACCGCCGAAAUCAAUUGAAAGUCAUUUUGAUUGGUUGGUGGCGUAUUCGAAAGGAACGUCAUUGUCAUAGUCUUUUUUAAACUAUGGAGCGCUACUGGUUGG .........................................................................................................................(..).................................................. >X15196.1/270-75 GCAGCCAGAAGAGGCGCGUUGCCAAGUAACGGUGUUGGAGGAGCCAGUCCUGUGAUAACACCUGAGGGGGUGCAUCGCCGAGGUGAUUGAACGGCUGGCCACGUUCAUCAUCGGCUACAGGGGCUGAAUCCCCUGGGUUGUCACCAGAAGCGUUCGCAGUCGGGCGUUUCGCAAGUGGUGGAGCACUUCUGGGUGA ............................................................................................................................(..).................................................................... >AL591976.1/186683-186486 UGGUGAGGUAGAGGUUGCGAGAUGCACUAGUAAUUUUUUCGAGGCGAAACAAAGACGCCGACGACAAAGAAUGAACAGGUUGAUCGCCGAAGUGACUAUUUUCUCUUUGUUUAGAAAUAGUUGUUGGGACAGUUUCCUAAAGGGGCUGGACUGCUAUAAGAAUUUGUCGAAAUUUCUUAUAGGUGUGCUAUCUGACAA ........................................................................(..).......................................................................................................................... >BA000031.2/1190723-1190903 UGUUGCCGUAGAGGCGCAGUCUCGAAGAGUAGCUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGGAAGGCGAAGAUUGCCGAAGUAAGUCGUAUAUCAAAACGCCUUGCUGGGGUUGUAUCUGAAAGGAACAACACUGCCAUAGUAUAUUUACAUUAAACUAUGGAGCGCUACUGUAGGG ........................................................................(...)........................................................................................................ >CP000436.1/843556-843727 UACAUAUGUAGAGGUGCGGCUGUUAUAAGUAAUUUUUUGAGUGGAUAACGAUGAAAAAAAUGAAAGGAAUAGUUGCCGAAAUCAAUUAAAAGUCAUUUUAAUUGGUUGGGGGCGUAUUCGAAAGAAACGUCACUGUCAUAGUAUUUAUCCACUAUGGAGCGCUACUGGUUAG .......................................................................................................................(..)................................................. >BA000004.3/1819757-1819575 AGUGAGGAUAGAGGUGCAAAAACCAAGAGUACACAAUUGGAGGAGAAUGAGAUCCGUUGAGAAUUGUGGAAAGGGGAAUUUGCCGAAGCUGGAAGAAUCUCAUGUUCUGAAGGCUGGUUCUGUAUUAAAUAAAUACAGAACUGUCAUAUAGCGGAUGUUGCUAUAUGGAGGGCUAUCUCACGC ..............................................................................................................................(...).................................................... >AASA01000017.1/10332-10501 ACAAAUUGUAGAGGUGCGAAUUCAAUAAGUAUUUCUUCUGAGUGGAAAACGAUGAAGGGGAAGGAAAGGUGAAUUUGCCGAAAUCAAUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUGUCGAAAGAAACGACACUGUCGUAGUAAAUGCUACGGAGUGCUACUGUUAGG .........................................................................................................................(..)............................................. >AE008691.1/719320-719498 CGCAUAAAUAGAGGAGCUGCCAAGCAUGUAUUUGGCGAGGUGUUAAGGAGAAGAACCUCCAAUACUCGCUGAAGAAGGUUUGGCUGCCGAAAGGGUGAGCUUGUUCUUGAGCUCAUCCUUGGUGGUAAACACAAAGUUUACCACUGUCAUGGGACCUCCCAUGAAGCGCUAUUUAUGCA ..................................................................................................................................(...)............................................ >AAOX01000015.1/22460-22639 AGUGAAGGUAGAGGUGCAAACUUCAUCAGUAAAAGCUUGGAGAAAGAUGAGUUUCCGUGAAAAGCUUUGAAAGGGAAUGUUUGCCGAAGAAAAGGAAGUCUCAUUUCUUUCUUUUCUGGUCCUGUAUUGAAUAAAUACUGGAUUGUCAAGACAGCGCCGUCUUGGAGAGCUAUCUCACUG ................................................................................................................................(...)............................................... >CP000029.1/981298-981477 AGAUUUUGAUGAGGCGCAUCAAUCAUGAGUAAACUUUAGAUAAUUUGUCUGCUAACAAUUAUAGAGUUAAAAGGGUGAGAUGCCGAAAUGAUUCAUAAUAGCAGUUAUGAAUCGUUGGACUUAAUGGUUAAGAGCUAUAAGUUUGUCAUUAUUAUUAAAUAAUGGAGUGCAUCACUUGUA ................................................................................................................................(..)................................................ >AL935263.2/928916-929097 AUCGAAAGAAGAGGAUGCGGUUAACAAUAGUAGCCGGCUGGAAGUGGGUCACCACUUAUGAAGGUCAGUGAACGGGGCAACCGCCGAAAUCGAUGGAUCAGUGACCGAUUCAUCCGUUGGGCCUUGGUUGAAUAAAUCAUGGACUGUCGCAGCUAGAAUAGUUGCGGGGCGCUAUCGACGAU ..........................................................................................................................................................(...)....................... >AE008691.1/1930427-1930616 AGGUGAGGUAGAGGCGCGGGUCAUCAAGAGUAACAUGCCAGAGGUGUUAAGGGCCGAUGAAGGUGUGUGAAAGGGGUGCCCGCCGAAGCGCGUAAACUUCCUUAAGGUUUACGCAGCUGGGCCUAUGCCGAACAGGUAUAGGACUGUCACUGAAGGCUCCCCAGGCCUUCAGUGGAGAGCUAUCUCGCUA .................................................................................................................................(...)........................................................ >CP000416.1/1669940-1669758 UCGAAUAGAAGAGGCGCGACCAACAAGAGUCGCUUUCCGGAGAUGGGUCACAUUGCUGAUGGAAGGUUAAAGGGGCGGUCGCCGAAAUUUACGCAUUUUGACCGGAUGCGUGGGUUGGGUCCUGGUUGAACAAGUCAGGGACUGUCGCAGUCAAAUAAUCGGCUGCGGGGCGCUUUCAACGAU ...............................................................................................................................(..).................................................... >FQ670178.1/927246-927070 UACAAAAGUAGAGGCGCAAUUAUUAUAAGUAUUUUUUCAGAGUGGAUAACGAAGAAGAAAAAAGAAAGGAAUAGUUGCCGAAAUCAAAUAAAAGUCGUUUUGUUUGGUUGGUGGCGUGCUCGAAAGGGGCGACACUGUCAUAGUUUUUCUGAUUAACUAUGGAGUGCUACGGUUGUU .........................................................................................................................(..).................................................... >CP000923.1/1076332-1076143 AGGUGAGGUAGAGGCGCGGGUUAUCAAGAGUAGUAUACCAGAGGUAUUUAAGGGCCGAUGAAGGUAUAUGAAAGGGAUGCUCGCCGAAGCGCGUAAAUUCCUUAAAGUUUACGCAGCUGGGCCUAUGCCGAAUAGGUAUAGGACUGUCACUGGAGGUUUCCCGAGCCUUCAGUGAAGAGCUAUCUCGCUA .................................................................................................................................(...)........................................................ >AE005176.1/2276232-2276414 CACAUCGAUAGAGGUCGCAACUGAUAUGAAUCUACGCCGAGUUGGAGCACAACAAAGACGCGUAUUUAGAGGAGGAGAGGUUGCCGAAAGAAUUUUGUUGCUCAGCAAGGUUCUUGGGCUAGUGAGAAAAACUCACUAGACUGUCGCAAAUGGUUAAUAACCAUGCGGAGGGCUAUUCGUUCA ..........................................................................................................................................................(...)........................ >CP000002.3/3366091-3365915 UAGUGAGGUAGAGGUUGCGCGGAUGAUGAGUCGCAUGUGUGAGGCUGAUGGGGCCGAUGAUCAUAUGCAAAAGGCAUCAGCGCCGAAGCAUAAGGAAGCCAUUCAUUCUUUAUGCUGGGUCUGCAUUGAAUAAGUGCAGGACUGCCGCGGGUAUUCCCGCGGAGGGCUAUCCGGAGA ...............................................................................................................................(...)............................................. >AF306669.1/1019-1194 AUAUUUUGAUGAGGCGCAUCAAUCAUGAGUAAAGUUUAGAUUACUGUCUGCUAACAGCUAAAUUUGAAAGGGUGCGAUGCCGAAGCAAUUAUAAUAGCAGUUAUAAUUUGUUGGACUUUUUGGUUAAGAGCUGAGAGUUUGUCAUUAUUUAAAAAUAAUGGAGUGCAUCACUUGUA .....................................................................................................................................................(..)....................... >ABDQ01000005.1/49327-49153 AACUAAGAUAGAGGUGCGAGAUUUAAGAGUAGUAUUAUGGAGUUAAGUGCUAAGAAGUAAUAAGAAAGGAAAUUUCGCCGAAGCUUAUAGAUAAUACUUUAAUGCUAUUUGCUGGGAUUACAUAAAAUAUAUGUAAGACUGUCACAAAUAAAGUUUGUGGAGAGCUAUUAUUUUA ....................................................................................................................................................(...)...................... >AP006716.1/1558409-1558233 AGAAAUUGAUGAGGCGCAUCAAUCAUCAGUAUAUAUUAGAUAAACUGUCUGCAACAGCUAAUAUAGAAAGGGUGCGAUGCCGAAAUGAAUCAUAAUCGCAGCUAUGAUUUGUUGGACUUUGUGGUUAAGAGCUGAAAGUUUGUCAUUAUUAUUUAAUAAUGGAGUGCAUCACUUGUA .............................................................................................................................(..)................................................ >AF269536.1/680-500 AAUAGAGUUAGAGGUUGCAUUAUUAAUGACUAACUUAUCAGAAGUCGUAUGGGACAUGUGUUGAAUAAGUGAAAGGUAAUAAUGCCGAAAUGAUGUUAUUUCCAUAAAUUAGCAUUGUGAAGUUGGUUGAACAAUAAAAACAUCACAACCACGAAUGCUUUCUUCAAUAUUUAUUUGAAUU ................................................................................................................................(..)................................................. >AALE02000022.1/49827-50019 UAAGCCAGAAGAGGUGCGUCGCCCAGGUAAAGUGUCAGAGGAGCCGUGAUCCGCUGAAGACAUUCGAGGGGGAGCGACGCCGAGACACGGUGAUUUCGGCCAUCAGCGUGUCGACUGCAGGGGCUGAAUCCCCUGGGUUGUCACCAGUGCCGUUCCUUUAGGGCGGUCAACAAGGUGGAGCGCUUCUGGGUGU ............................................................................................................................(..)................................................................. >CP000425.1/2337129-2337310 CACAUCGAUAGAGGUCGCAACUGAUAUGAAUCUACGCCGAGUUGGAGCACAACAAAGACGCGUAUUAGAGGGGGAGAAGUUGCCGAAAGAAUUUUGACGCUCAGCAAAGUUCUUGGGCUAGUGAGGAAAACUCACUAGACUGUCGCAAAUGGUUAAGAACCAUGCGGAGGGCUAUUCGUUCA .............................................................................................................................(...).................................................... >CP001186.1/1355449-1355630 CUCAAAGGUAGAGGCCGCGAUAGGAAAGAGUAAGCUAUGGGAGAUUUAAUGGAAUCUGUGAUCAUAGGUUGAAAGGGACUAUUGCCGAAAUAUAAGAAUAACCAUCUUAUUCAUAUAUUGGGACUACAUUGAAUAAAUGUAGUACUGUCAUAAGAUUUAUUUUAUGGAGAGCUAUUUGGAGA ..................................................................................................................................(...)............................................... >CP000826.1/4955718-4955911 CAAGCCAGAAGAGGUGCGUCGCCCAGGUAGAGUGUCAGAGGAGCCGUUGUCCAAUGACGGCGCUUGAGGGGGAGCGACGCCGAGGUAAGGUGAUGUGCGGCAUUCAUCGUAUCGACUACAGGGGCUGAAUCCCCUGAGUUGUCACCAGGGAUUGUCCGUAGGGGCAAUCAGCAAGGUGGGGCGCUUCUGGGUGU .............................................................................................................................(..)................................................................. >U00006.1/98763-98567 CAGGCCAGAAGAGGCGCGUUGCCCAAGUAACGGUGUUGGAGGAGCCAGUCCUGUGAUAACACCUGAGGGGGUGCAUCGCCGAGGUGAUUGAACGGCUGGCCACGUUCAUCAUCGGCUACAGGGGCUGAAUCCCCUGGGUUGUCACCAGAAGCGUUCGCAGUCGGGCGUUUCGCAAGUGGUGGAGCACUUCUGGGUGA ............................................................................................................................................................................(..)..................... >CP000002.3/2878377-2878198 GGUGAAGAUAGAGGUGCGAACUUCAAGAGUAGGCUUGAUGAGGAAGAUGGAUUCCGAUGAAGAAAGCCGAAAGGGGAGCGUCGCCGAAGCGGGGAAAAAUCCACUCGUUUUUCCUGCUGGCUUUACAUUGAAUAAAUGUGAGGCUGUCAAGAAAUCAUUUCUUGGAGAGCUAUCUCGUUG .................................................................................................................................(...).............................................. >X00008.1/296-492 CAGGCCAGAAGAGGCGCGUUGCCCAAGUAACGGUGUUGGAGGAGCCAGUCCUGUGAUAACACCUGAGGGGGUGCAUCGCCGAGGUGAUUGAACGGCUGGCCACGUUCAUCAUCGGCUAAGGGGGCUGAAUCCCCUGGGUUGUCACCAGAAGCGUUCGCAGUCGGGCGUUUCGCAAGUGGUGGAGCACUUCUGGGUGA ............................................................................................................................(...).................................................................... >AL009126.3/3421348-3421169 CAGUGAGGUAGAGGUUGCGCGGAUGAUGAGUCACACAUGCUAGGCUGACAGGGGCUGUUAAACAUGUGUAAAAGGCAUCAGCGCCGAAGUGUGGAGAAAGCCGAUCCUUCUCUAUGCUGGGACUGUAUCUGAAUAAGUGCAGGACUGCCGCGUGCUUUUUCGCGGAGGGCUAUCCGGAGA ...............................................................................................(..)................................................................................. >AAMR01000029.1/5147-5324 AUCGCACGUAGAGGCGCAAUUAUAAAAAGUAGUUUUCGUUGGGGUGAUGCCAAUGAGCGGGAAUGAAAGGUCUAAUUGCCGAAGUAAAUUGUAUAUCUAAGCAAUUUGCUGGGGUUGUGCUCAAUAGGUACAACACUGCCAUAGUCUUAAUUUUAAACUAUGGAGCGCUACUGUAGGG .........................................................................................................................(...).................................................... >EF419299.1/175-1 AAAAGAGUUAGAGGUUGCGUCUUUAAUUAGUAACACUUCAGAAGUUAUUAAGGAACGUGUGUUGAAAGUGUGGAAGGUAAAGAUGCCGAAAUGAAUGAUACCCUUAAUUAUCAUUUGUUGGGACAGUUAUCGAAUAGAAACUGUACUGUCACAAUUUGUGAUGUGCUACCGACGG ...................................................................................................................................(...)....................................... >AP008934.1/1400599-1400421 AGGUUUUGAUGAGGCGCAUCAAUCAUUAGUAAAGAUUAGAAGAAUCUGACUGCUAGCAGCUAAUUUUGAAAGGGUGAGAUGCCGAAACGGUUAUAAUAGCAGCUUAUAACAUGUUGGACUUUAUGGUUAAGAGCUAAGAGUCUGUCAUUAUUUUAAGAUAAUGGAGUGCAUCACUUGUA ...................................................................................................................(..)............................................................ >AL596166.1/112469-112272 UGGUGAGGUAGAGGUUGCGAGAUGCACUAGUAAUUUUUUCGAGGCGAAACAAAGACGCCAAUGACAAAAAACGAACAGGUUAAUCGCCGAAGUGACUAUUUUUUCUUUGUAUCGAAAUAGUUGUUGGGACAGUUUCCUAAAGGAGCUGGACUGCUAUAAGAAUUUGUCGAAAUUUCUUAUAGGUGUGCUAUCUGACAA .........................................................................................................................................(..)......................................................... >BX950851.1/4451556-4451748 CAAGCCAGAAGAGGCGCGUCGCCCAGGUAAGAUAUCGGAGGAACCGUAAUCCGCUGAUGAUAUCCGAGGGGGAGCGACGCCGAGAUGCGGUGAAAUUCGGCUUUCACCCUAUCGACUACAGAGGCUGAAUCCUCUGGGUUGUCACCGGAUUCGUCCUGAUGGACGUCCAGCAAGGUGGAGCGCUUCUGGGUGU .............................................................................................................................(..)................................................................ >CP000647.1/4829910-4829675 AUUGCCAGAAGAGGUGCGUUGCCCAGGUAACCGUAUUGGAGGAACCAGUCCGGGGAAGAUACGUGAGGGGGAGCAACGCCGAGGUGAAAGAGCGUCUGGUCACGCUCCUCGCCGGCCACAGGGGCUGAAUCCCCUGGGUUGUCACCAGAAACGUUCGCAGUCGGGCGUUUCAUACCCGAACACCUCAGCGCCCAAAGCGGUGAGUCGGGUCUACAAGGUGGAGCACUUCUGGGUGA ...............................................................................................................................................................................................(...)........................................
2		(.RA.) N(RR(A))			41	87.2
>CP000436.1/843556-843727 UACAUAUGUAGAGGUGCGGCUGUUAUAAGUAAUUUUUUGAGUGGAUAACGAUGAAAAAAAUGAAAGGAAUAGUUGCCGAAAUCAAUUAAAAGUCAUUUUAAUUGGUUGGGGGCGUAUUCGAAAGAAACGUCACUGUCAUAGUAUUUAUCCACUAUGGAGCGCUACUGGUUAG ............................................................................(..(.......................................(..)..................................))............. >AE017143.1/992934-993104 ACAAAUUGUAGAGGUGCAAAUCCGAUAAGUAUUUCUUCUGAGUGGAAAGCGAUGAAGGGGAAGGAAAGGCGUAUUUGCCGAAAUCAAUUAAGCGUCAUCUUAGUUGGUUGGGGUCGUUGCCGAAAGGGACGACACUGUCGUAAUUCAAUAUUACGGAGUGCUACUAUUAGG ..............................................................................(..(.......................................(..)...............................))............. >AE008691.1/719320-719498 CGCAUAAAUAGAGGAGCUGCCAAGCAUGUAUUUGGCGAGGUGUUAAGGAGAAGAACCUCCAAUACUCGCUGAAGAAGGUUUGGCUGCCGAAAGGGUGAGCUUGUUCUUGAGCUCAUCCUUGGUGGUAAACACAAAGUUUACCACUGUCAUGGGACCUCCCAUGAAGCGCUAUUUAUGCA .......................................................................................(..(.......................................(...).............................))............. >CP000046.1/1759610-1759435 AAUUGAGUUAGAGGUUGCAUGUUUAAUUAGUAACUUGUCAGAAGUAUUUAUGGUACAUAAGUUGAACAAGUGAAAGGUAAAGAUGCCGAAAUAGAUAUAAACCAUAAAUUAUAUCUAUUGGGACAGUUUUCGAAUAGGAACUGUACUGUCACAGAAUGUGAUGUGCUACCUUAUAU ......................................................................................(..(..............................................................(...)....))............. >AF269536.1/680-500 AAUAGAGUUAGAGGUUGCAUUAUUAAUGACUAACUUAUCAGAAGUCGUAUGGGACAUGUGUUGAAUAAGUGAAAGGUAAUAAUGCCGAAAUGAUGUUAUUUCCAUAAAUUAGCAUUGUGAAGUUGGUUGAACAAUAAAAACAUCACAACCACGAAUGCUUUCUUCAAUAUUUAUUUGAAUU ......................................................................................(..(......................................(..)...............................))................ >AE016827.1/1325416-1325239 UACACAUGUAGAGGUGCGAAUAUUAUAAGUAUUUUUCCAGAGUGGAUAACAAUGAAGGAAAUUGAAAGGAAUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAACUGGUUGGUAACGUCACCGAAAGGAACGUUACUGCCAUAGUCAUUUUUGAUUAACUAUGGAGCGCUACUCGUGGG ..............................................................................(..(.......................................(..)......................................))............. >M93419.1/332-511 AGUGAAGAUAGAGGUGCGAACUUCAUCAGUAAAAGCUUGGAGAAGAAUGAGCUUCAAUGAAAAGCUUUGAAAGGGAACGUUCGCCGAAGUGAAGAAAAACUCAUUUUUUUCUUUGCUGGUCCUGCAUUUAAGAGAUGCCGGAUUGUCAAGGCGGUGCCGCCUUGGAGAGCUAUCUCACUG ....................................................................................(..(........................................(...)................................))............. >X15196.1/270-75 GCAGCCAGAAGAGGCGCGUUGCCAAGUAACGGUGUUGGAGGAGCCAGUCCUGUGAUAACACCUGAGGGGGUGCAUCGCCGAGGUGAUUGAACGGCUGGCCACGUUCAUCAUCGGCUACAGGGGCUGAAUCCCCUGGGUUGUCACCAGAAGCGUUCGCAGUCGGGCGUUUCGCAAGUGGUGGAGCACUUCUGGGUGA ........(..(................................................................................................................(..)..........................................................))........ >FQ670178.1/927246-927070 UACAAAAGUAGAGGCGCAAUUAUUAUAAGUAUUUUUUCAGAGUGGAUAACGAAGAAGAAAAAAGAAAGGAAUAGUUGCCGAAAUCAAAUAAAAGUCGUUUUGUUUGGUUGGUGGCGUGCUCGAAAGGGGCGACACUGUCAUAGUUUUUCUGAUUAACUAUGGAGUGCUACGGUUGUU ..............................................................................(..(.......................................(..).....................................))............. >AASA01000017.1/10332-10501 ACAAAUUGUAGAGGUGCGAAUUCAAUAAGUAUUUCUUCUGAGUGGAAAACGAUGAAGGGGAAGGAAAGGUGAAUUUGCCGAAAUCAAUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUGUCGAAAGAAACGACACUGUCGUAGUAAAUGCUACGGAGUGCUACUGUUAGG ..............................................................................(..(.......................................(..)..............................))............. >AL591976.1/186683-186486 UGGUGAGGUAGAGGUUGCGAGAUGCACUAGUAAUUUUUUCGAGGCGAAACAAAGACGCCGACGACAAAGAAUGAACAGGUUGAUCGCCGAAGUGACUAUUUUCUCUUUGUUUAGAAAUAGUUGUUGGGACAGUUUCCUAAAGGGGCUGGACUGCUAUAAGAAUUUGUCGAAAUUUCUUAUAGGUGUGCUAUCUGACAA ................................................................(..(....(..)....)).................................................................................................................... >CP000569.1/516240-516411 ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ..............................................................................(..(.......................................(..)................................))............. >BA000031.2/1190723-1190903 UGUUGCCGUAGAGGCGCAGUCUCGAAGAGUAGCUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGGAAGGCGAAGAUUGCCGAAGUAAGUCGUAUAUCAAAACGCCUUGCUGGGGUUGUAUCUGAAAGGAACAACACUGCCAUAGUAUAUUUACAUUAAACUAUGGAGCGCUACUGUAGGG ...............................................................(..(.....(...)............................................................)).......................................... >AAWP01000069.1/5541-5721 UAUUGCCGUAGAGGUGCAGUCUCGAAGAGUAGCUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGGAAGGCGAGGAUUGCCGAAGUAGGUGGCCUAUCGAAGCCACUUGCUGGGGUUGUCUCUGAAAGGAACAACACUGCCAUAGUAUAUUUACAUUAAACUAUGGAGCGCUACUGUAGGG ...............................................................(..(........................................................(..)..........)).......................................... >AF270308.1/2156-2331 AAUAGAGUUAGAGGUUGCAUUAUUAAUGACUAACUUAUCAGAAGUCGUAUGGGACAUGUGUUGAAUAAGUGAAAGGUAAUAAUGCCGAAAUGAUGUUAUUUCCAUAAAUUAGCAUUGUUGGGACAACUUUCGAAUAGAAGUUGUACUGUCACUUUAUGUGAUGUGCUACCUUAUAU .....................................................................................(..(..........................................(...).........................))............. >BX950851.1/4451556-4451748 CAAGCCAGAAGAGGCGCGUCGCCCAGGUAAGAUAUCGGAGGAACCGUAAUCCGCUGAUGAUAUCCGAGGGGGAGCGACGCCGAGAUGCGGUGAAAUUCGGCUUUCACCCUAUCGACUACAGAGGCUGAAUCCUCUGGGUUGUCACCGGAUUCGUCCUGAUGGACGUCCAGCAAGGUGGAGCGCUUCUGGGUGU ......(..(...................................................................................................................(..).........................................................))..... >AF306669.1/1019-1194 AUAUUUUGAUGAGGCGCAUCAAUCAUGAGUAAAGUUUAGAUUACUGUCUGCUAACAGCUAAAUUUGAAAGGGUGCGAUGCCGAAGCAAUUAUAAUAGCAGUUAUAAUUUGUUGGACUUUUUGGUUAAGAGCUGAGAGUUUGUCAUUAUUUAAAAAUAAUGGAGUGCAUCACUUGUA ................................................................................(..(.................................................................(..)........))............. >AE004439.1/1026545-1026371 UACUUGUGUAGAGGAGCGAUCACUAUAAGUAUUUUUUCUGAGUGGAUAACGAAGAGGAAAAAGGAAAGGAGUGACCGCCGAAAUCAAUUGAAAGUCAUUUUGAUUGGUUGGUGGCGUAUUCGAAAGGAACGUCAUUGUCAUAGUCUUUUUUAAACUAUGGAGCGCUACUGGUUGG ..............................................................................(..(.......................................(..)...................................))............. >CP001186.1/1355449-1355630 CUCAAAGGUAGAGGCCGCGAUAGGAAAGAGUAAGCUAUGGGAGAUUUAAUGGAAUCUGUGAUCAUAGGUUGAAAGGGACUAUUGCCGAAAUAUAAGAAUAACCAUCUUAUUCAUAUAUUGGGACUACAUUGAAUAAAUGUAGUACUGUCAUAAGAUUUAUUUUAUGGAGAGCUAUUUGGAGA .....................................................................................(..(.........................................(...)................................))............. >AP006716.1/1558409-1558233 AGAAAUUGAUGAGGCGCAUCAAUCAUCAGUAUAUAUUAGAUAAACUGUCUGCAACAGCUAAUAUAGAAAGGGUGCGAUGCCGAAAUGAAUCAUAAUCGCAGCUAUGAUUUGUUGGACUUUGUGGUUAAGAGCUGAAAGUUUGUCAUUAUUAUUUAAUAAUGGAGUGCAUCACUUGUA .................................................................(..(............(..)............)...)........................................................................... >AAOX01000015.1/22460-22639 AGUGAAGGUAGAGGUGCAAACUUCAUCAGUAAAAGCUUGGAGAAAGAUGAGUUUCCGUGAAAAGCUUUGAAAGGGAAUGUUUGCCGAAGAAAAGGAAGUCUCAUUUCUUUCUUUUCUGGUCCUGUAUUGAAUAAAUACUGGAUUGUCAAGACAGCGCCGUCUUGGAGAGCUAUCUCACUG ....................................................................................(..(........................................(...)................................))............. >CP000002.3/3366091-3365915 UAGUGAGGUAGAGGUUGCGCGGAUGAUGAGUCGCAUGUGUGAGGCUGAUGGGGCCGAUGAUCAUAUGCAAAAGGCAUCAGCGCCGAAGCAUAAGGAAGCCAUUCAUUCUUUAUGCUGGGUCUGCAUUGAAUAAGUGCAGGACUGCCGCGGGUAUUCCCGCGGAGGGCUAUCCGGAGA ...................................................................................(..(........................................(...)...............................))............ >AAKK02000085.1/12844-12662 UGUUGCCGUAGAGGCGCGGUCUCGAAGAGUAGCUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGGAAGGCGAAGAUUGCCGAAGUAAGUAACUCAUCAAAGUUACUUGCUGGGGUUGUAUCUGAAAGGAACAACACUGCCAUAGUAUAUAUUCACAUUAAACUAUGGAGCGCUACUGUAGGG ................................................................(..(....(...)............................................................).)........................................... >CP000416.1/1669940-1669758 UCGAAUAGAAGAGGCGCGACCAACAAGAGUCGCUUUCCGGAGAUGGGUCACAUUGCUGAUGGAAGGUUAAAGGGGCGGUCGCCGAAAUUUACGCAUUUUGACCGGAUGCGUGGGUUGGGUCCUGGUUGAACAAGUCAGGGACUGUCGCAGUCAAAUAAUCGGCUGCGGGGCGCUUUCAACGAU ..................................................................................(..(.........................................(..)....................................)).............. >CP000029.1/981298-981477 AGAUUUUGAUGAGGCGCAUCAAUCAUGAGUAAACUUUAGAUAAUUUGUCUGCUAACAAUUAUAGAGUUAAAAGGGUGAGAUGCCGAAAUGAUUCAUAAUAGCAGUUAUGAAUCGUUGGACUUAAUGGUUAAGAGCUAUAAGUUUGUCAUUAUUAUUAAAUAAUGGAGUGCAUCACUUGUA ...................................................................................(..(.........................................(..).................................))............. >BA000004.3/1819757-1819575 AGUGAGGAUAGAGGUGCAAAAACCAAGAGUACACAAUUGGAGGAGAAUGAGAUCCGUUGAGAAUUGUGGAAAGGGGAAUUUGCCGAAGCUGGAAGAAUCUCAUGUUCUGAAGGCUGGUUCUGUAUUAAAUAAAUACAGAACUGUCAUAUAGCGGAUGUUGCUAUAUGGAGGGCUAUCUCACGC ...........................................................................................................(..(...............(...)...............))................................... >AE008691.1/1930427-1930616 AGGUGAGGUAGAGGCGCGGGUCAUCAAGAGUAACAUGCCAGAGGUGUUAAGGGCCGAUGAAGGUGUGUGAAAGGGGUGCCCGCCGAAGCGCGUAAACUUCCUUAAGGUUUACGCAGCUGGGCCUAUGCCGAACAGGUAUAGGACUGUCACUGAAGGCUCCCCAGGCCUUCAGUGGAGAGCUAUCUCGCUA ...................................................................................(..(..........................................(...).........................................))............. >BA000037.2/1373591-1373770 UAUCGACGUAGAGGCGCAAUGGUAAAGAGUAACUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGAAAGGUAUCCAUUGCCGAAGUGAAUUGCAUAUCAAAGCAGUUUGCUGGGGUUGCAUCCGAAAGGAACAACACUGCCAUAGUAUUUAAUGUAUAACUAUGGAGCGCUACUGUAGGU ................................................................................(..(.......................................(..)......................................))............. >AM263198.1/783761-783564 UGGUGAGGUAGAGGUUGCAAGAUUCACAAGUAAUUUUUUAGAAGCGAAACAAAGACGCUGAUGACAAAGAAUGAACAGGAUGAUUGCCGAAGUGACUAUUUUCUCUUUGUUUAGAAAUAGUUGUUGGGACAGUUUCCUAAAGGAGCUGGACUGCUAUAAGAAUUUGUCGAAAUUUCUUAUAGGUGUGCUAUCUGACAA ..................................................................(..(..(..)..)....).................................................................................................................. >ABCF01000065.1/4547-4725 AGUGGUGAUAGAGGUGCGGACUUUCAUCAGUAGAUGCUUCGAGGAGUAUGGGCUCUUAUGAAGGGUAUCGAAAGGGAAAUUCGCCGAAGUGGAAGCAGGCUCAUAUCUGUUUGCGCUGGUUCUGUGUUUAAGAGAUGCAGGAUUGUCAAGAUUAACAGUCUUGGAGAGCUAUCUCACGU ....................................................................................(..(................................................................(...)....))................ >AP008934.1/1400599-1400421 AGGUUUUGAUGAGGCGCAUCAAUCAUUAGUAAAGAUUAGAAGAAUCUGACUGCUAGCAGCUAAUUUUGAAAGGGUGAGAUGCCGAAACGGUUAUAAUAGCAGCUUAUAACAUGUUGGACUUUAUGGUUAAGAGCUAAGAGUCUGUCAUUAUUUUAAGAUAAUGGAGUGCAUCACUUGUA ..................................................................................(..(......(...).................))............................................................... >CP000425.1/2337129-2337310 CACAUCGAUAGAGGUCGCAACUGAUAUGAAUCUACGCCGAGUUGGAGCACAACAAAGACGCGUAUUAGAGGGGGAGAAGUUGCCGAAAGAAUUUUGACGCUCAGCAAAGUUCUUGGGCUAGUGAGGAAAACUCACUAGACUGUCGCAAAUGGUUAAGAACCAUGCGGAGGGCUAUUCGUUCA .................................................................................................................................................(..(....(...)....)).................. >AE005176.1/2276232-2276414 CACAUCGAUAGAGGUCGCAACUGAUAUGAAUCUACGCCGAGUUGGAGCACAACAAAGACGCGUAUUUAGAGGAGGAGAGGUUGCCGAAAGAAUUUUGUUGCUCAGCAAGGUUCUUGGGCUAGUGAGAAAAACUCACUAGACUGUCGCAAAUGGUUAAUAACCAUGCGGAGGGCUAUUCGUUCA ....................................................................................(..(..................................................................(...)..........))............ >AL596166.1/112469-112272 UGGUGAGGUAGAGGUUGCGAGAUGCACUAGUAAUUUUUUCGAGGCGAAACAAAGACGCCAAUGACAAAAAACGAACAGGUUAAUCGCCGAAGUGACUAUUUUUUCUUUGUAUCGAAAUAGUUGUUGGGACAGUUUCCUAAAGGAGCUGGACUGCUAUAAGAAUUUGUCGAAAUUUCUUAUAGGUGUGCUAUCUGACAA ........(..(.............................................................................................................................(..)...............................................))........ >CP000923.1/1076332-1076143 AGGUGAGGUAGAGGCGCGGGUUAUCAAGAGUAGUAUACCAGAGGUAUUUAAGGGCCGAUGAAGGUAUAUGAAAGGGAUGCUCGCCGAAGCGCGUAAAUUCCUUAAAGUUUACGCAGCUGGGCCUAUGCCGAAUAGGUAUAGGACUGUCACUGGAGGUUUCCCGAGCCUUCAGUGAAGAGCUAUCUCGCUA ....................................................................................(..(.........................................(...).........................................))............. >ABDQ01000005.1/49327-49153 AACUAAGAUAGAGGUGCGAGAUUUAAGAGUAGUAUUAUGGAGUUAAGUGCUAAGAAGUAAUAAGAAAGGAAAUUUCGCCGAAGCUUAUAGAUAAUACUUUAAUGCUAUUUGCUGGGAUUACAUAAAAUAUAUGUAAGACUGUCACAAAUAAAGUUUGUGGAGAGCUAUUAUUUUA ..............................................................................(..(..................................................................(...).......))............. >AALE02000022.1/49827-50019 UAAGCCAGAAGAGGUGCGUCGCCCAGGUAAAGUGUCAGAGGAGCCGUGAUCCGCUGAAGACAUUCGAGGGGGAGCGACGCCGAGACACGGUGAUUUCGGCCAUCAGCGUGUCGACUGCAGGGGCUGAAUCCCCUGGGUUGUCACCAGUGCCGUUCCUUUAGGGCGGUCAACAAGGUGGAGCGCUUCUGGGUGU ......(..(..................................................................................................................(..)..........................................................))..... >AL935263.2/928916-929097 AUCGAAAGAAGAGGAUGCGGUUAACAAUAGUAGCCGGCUGGAAGUGGGUCACCACUUAUGAAGGUCAGUGAACGGGGCAACCGCCGAAAUCGAUGGAUCAGUGACCGAUUCAUCCGUUGGGCCUUGGUUGAAUAAAUCAUGGACUGUCGCAGCUAGAAUAGUUGCGGGGCGCUAUCGACGAU ....................................................................................(..(..................................................................(...).......)).............. >EF419299.1/175-1 AAAAGAGUUAGAGGUUGCGUCUUUAAUUAGUAACACUUCAGAAGUUAUUAAGGAACGUGUGUUGAAAGUGUGGAAGGUAAAGAUGCCGAAAUGAAUGAUACCCUUAAUUAUCAUUUGUUGGGACAGUUAUCGAAUAGAAACUGUACUGUCACAAUUUGUGAUGUGCUACCGACGG ......................................................................................(..(.........................................(...).........................))............ >J03294.1/2297-2476 GGUGAAGAUAGAGGUGCGAACUUCAAGAGUAUGCCUUUGGAGAAAGAUGGAUUCUGUGAAAAAGGCUGAAAGGGGAGCGUCGCCGAAGCAAAUAAAACCCCAUCGGUAUUAUUUGCUGGCCGUGCAUUGAAUAAAUGUAAGGCUGUCAAGAAAUCAUUUUCUUGGAGGGCUAUCUCGUUG ...........................................................(..(.................................................................(...)..........))................................... >CP000002.3/2878377-2878198 GGUGAAGAUAGAGGUGCGAACUUCAAGAGUAGGCUUGAUGAGGAAGAUGGAUUCCGAUGAAGAAAGCCGAAAGGGGAGCGUCGCCGAAGCGGGGAAAAAUCCACUCGUUUUUCCUGCUGGCUUUACAUUGAAUAAAUGUGAGGCUGUCAAGAAAUCAUUUCUUGGAGAGCUAUCUCGUUG ....(..(.........................................................................................................................(...)..........................................))..
3		(.RA.) N(RR(A)) N(R(Y))			29	61.7
>CP000046.1/1759610-1759435 AAUUGAGUUAGAGGUUGCAUGUUUAAUUAGUAACUUGUCAGAAGUAUUUAUGGUACAUAAGUUGAACAAGUGAAAGGUAAAGAUGCCGAAAUAGAUAUAAACCAUAAAUUAUAUCUAUUGGGACAGUUUUCGAAUAGGAACUGUACUGUCACAGAAUGUGAUGUGCUACCUUAUAU ............................(.(.........................................))............(..(..............................................................(...)....))............. >ABDQ01000005.1/49327-49153 AACUAAGAUAGAGGUGCGAGAUUUAAGAGUAGUAUUAUGGAGUUAAGUGCUAAGAAGUAAUAAGAAAGGAAAUUUCGCCGAAGCUUAUAGAUAAUACUUUAAUGCUAUUUGCUGGGAUUACAUAAAAUAUAUGUAAGACUGUCACAAAUAAAGUUUGUGGAGAGCUAUUAUUUUA ...........................(.(..................................))............(..(..................................................................(...).......))............. >FQ670178.1/927246-927070 UACAAAAGUAGAGGCGCAAUUAUUAUAAGUAUUUUUUCAGAGUGGAUAACGAAGAAGAAAAAAGAAAGGAAUAGUUGCCGAAAUCAAAUAAAAGUCGUUUUGUUUGGUUGGUGGCGUGCUCGAAAGGGGCGACACUGUCAUAGUUUUUCUGAUUAACUAUGGAGUGCUACGGUUGUU ...........................(.(..................................))............(..(.......................................(..).....................................))............. >AF306669.1/1019-1194 AUAUUUUGAUGAGGCGCAUCAAUCAUGAGUAAAGUUUAGAUUACUGUCUGCUAACAGCUAAAUUUGAAAGGGUGCGAUGCCGAAGCAAUUAUAAUAGCAGUUAUAAUUUGUUGGACUUUUUGGUUAAGAGCUGAGAGUUUGUCAUUAUUUAAAAAUAAUGGAGUGCAUCACUUGUA ...........................(.(....................................))............(..(.................................................................(..)........))............. >CP000436.1/843556-843727 UACAUAUGUAGAGGUGCGGCUGUUAUAAGUAAUUUUUUGAGUGGAUAACGAUGAAAAAAAUGAAAGGAAUAGUUGCCGAAAUCAAUUAAAAGUCAUUUUAAUUGGUUGGGGGCGUAUUCGAAAGAAACGUCACUGUCAUAGUAUUUAUCCACUAUGGAGCGCUACUGGUUAG ...........................(.(................................))............(..(.......................................(..)..................................))............. >AASA01000017.1/10332-10501 ACAAAUUGUAGAGGUGCGAAUUCAAUAAGUAUUUCUUCUGAGUGGAAAACGAUGAAGGGGAAGGAAAGGUGAAUUUGCCGAAAUCAAUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUGUCGAAAGAAACGACACUGUCGUAGUAAAUGCUACGGAGUGCUACUGUUAGG ...........................(.(..................................))............(..(.......................................(..)..............................))............. >AE004439.1/1026545-1026371 UACUUGUGUAGAGGAGCGAUCACUAUAAGUAUUUUUUCUGAGUGGAUAACGAAGAGGAAAAAGGAAAGGAGUGACCGCCGAAAUCAAUUGAAAGUCAUUUUGAUUGGUUGGUGGCGUAUUCGAAAGGAACGUCAUUGUCAUAGUCUUUUUUAAACUAUGGAGCGCUACUGGUUGG ...........................(.(..................................))............(..(.......................................(..)...................................))............. >CP000569.1/516240-516411 ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ...........................(.(..................................))............(..(.......................................(..)................................))............. >CP000416.1/1669940-1669758 UCGAAUAGAAGAGGCGCGACCAACAAGAGUCGCUUUCCGGAGAUGGGUCACAUUGCUGAUGGAAGGUUAAAGGGGCGGUCGCCGAAAUUUACGCAUUUUGACCGGAUGCGUGGGUUGGGUCCUGGUUGAACAAGUCAGGGACUGUCGCAGUCAAAUAAUCGGCUGCGGGGCGCUUUCAACGAU ...........................(.(......................................))............(..(.........................................(..)....................................)).............. >CP000002.3/3366091-3365915 UAGUGAGGUAGAGGUUGCGCGGAUGAUGAGUCGCAUGUGUGAGGCUGAUGGGGCCGAUGAUCAUAUGCAAAAGGCAUCAGCGCCGAAGCAUAAGGAAGCCAUUCAUUCUUUAUGCUGGGUCUGCAUUGAAUAAGUGCAGGACUGCCGCGGGUAUUCCCGCGGAGGGCUAUCCGGAGA ............................(.(.....................................)).............(..(........................................(...)...............................))............ >AE016827.1/1325416-1325239 UACACAUGUAGAGGUGCGAAUAUUAUAAGUAUUUUUCCAGAGUGGAUAACAAUGAAGGAAAUUGAAAGGAAUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAACUGGUUGGUAACGUCACCGAAAGGAACGUUACUGCCAUAGUCAUUUUUGAUUAACUAUGGAGCGCUACUCGUGGG ...........................(.(..................................))............(..(.......................................(..)......................................))............. >M93419.1/332-511 AGUGAAGAUAGAGGUGCGAACUUCAUCAGUAAAAGCUUGGAGAAGAAUGAGCUUCAAUGAAAAGCUUUGAAAGGGAACGUUCGCCGAAGUGAAGAAAAACUCAUUUUUUUCUUUGCUGGUCCUGCAUUUAAGAGAUGCCGGAUUGUCAAGGCGGUGCCGCCUUGGAGAGCUAUCUCACUG ...........................(.(.......................................)).............(..(........................................(...)................................))............. >AE017143.1/992934-993104 ACAAAUUGUAGAGGUGCAAAUCCGAUAAGUAUUUCUUCUGAGUGGAAAGCGAUGAAGGGGAAGGAAAGGCGUAUUUGCCGAAAUCAAUUAAGCGUCAUCUUAGUUGGUUGGGGUCGUUGCCGAAAGGGACGACACUGUCGUAAUUCAAUAUUACGGAGUGCUACUAUUAGG ...........................(.(..................................))............(..(.......................................(..)...............................))............. >J03294.1/2297-2476 GGUGAAGAUAGAGGUGCGAACUUCAAGAGUAUGCCUUUGGAGAAAGAUGGAUUCUGUGAAAAAGGCUGAAAGGGGAGCGUCGCCGAAGCAAAUAAAACCCCAUCGGUAUUAUUUGCUGGCCGUGCAUUGAAUAAAUGUAAGGCUGUCAAGAAAUCAUUUUCUUGGAGGGCUAUCUCGUUG ......(.(................).)..............................(..(..................................................................(...)...........)).................................. >AAOX01000015.1/22460-22639 AGUGAAGGUAGAGGUGCAAACUUCAUCAGUAAAAGCUUGGAGAAAGAUGAGUUUCCGUGAAAAGCUUUGAAAGGGAAUGUUUGCCGAAGAAAAGGAAGUCUCAUUUCUUUCUUUUCUGGUCCUGUAUUGAAUAAAUACUGGAUUGUCAAGACAGCGCCGUCUUGGAGAGCUAUCUCACUG ...........................(.(.......................................)).............(..(........................................(...)................................))............. >BA000004.3/1819757-1819575 AGUGAGGAUAGAGGUGCAAAAACCAAGAGUACACAAUUGGAGGAGAAUGAGAUCCGUUGAGAAUUGUGGAAAGGGGAAUUUGCCGAAGCUGGAAGAAUCUCAUGUUCUGAAGGCUGGUUCUGUAUUAAAUAAAUACAGAACUGUCAUAUAGCGGAUGUUGCUAUAUGGAGGGCUAUCUCACGC .............................................................(.(......................))...................(..(...............(...)...............))................................... >BA000037.2/1373591-1373770 UAUCGACGUAGAGGCGCAAUGGUAAAGAGUAACUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGAAAGGUAUCCAUUGCCGAAGUGAAUUGCAUAUCAAAGCAGUUUGCUGGGGUUGCAUCCGAAAGGAACAACACUGCCAUAGUAUUUAAUGUAUAACUAUGGAGCGCUACUGUAGGU ...........................(.(...................................)).............(..(.......................................(..)......................................))............. >AE005176.1/2276232-2276414 CACAUCGAUAGAGGUCGCAACUGAUAUGAAUCUACGCCGAGUUGGAGCACAACAAAGACGCGUAUUUAGAGGAGGAGAGGUUGCCGAAAGAAUUUUGUUGCUCAGCAAGGUUCUUGGGCUAGUGAGAAAAACUCACUAGACUGUCGCAAAUGGUUAAUAACCAUGCGGAGGGCUAUUCGUUCA ....................................................................................................................(.(...................).).....(..(....(...)....)).................. >ABCF01000065.1/4547-4725 AGUGGUGAUAGAGGUGCGGACUUUCAUCAGUAGAUGCUUCGAGGAGUAUGGGCUCUUAUGAAGGGUAUCGAAAGGGAAAUUCGCCGAAGUGGAAGCAGGCUCAUAUCUGUUUGCGCUGGUUCUGUGUUUAAGAGAUGCAGGAUUGUCAAGAUUAACAGUCUUGGAGAGCUAUCUCACGU ............................(.(.....................................))..............(..(................................................................(...)....))................ >EF419299.1/175-1 AAAAGAGUUAGAGGUUGCGUCUUUAAUUAGUAACACUUCAGAAGUUAUUAAGGAACGUGUGUUGAAAGUGUGGAAGGUAAAGAUGCCGAAAUGAAUGAUACCCUUAAUUAUCAUUUGUUGGGACAGUUAUCGAAUAGAAACUGUACUGUCACAAUUUGUGAUGUGCUACCGACGG ...............................(.(...................................))...............(..(.........................................(...).........................))............ >CP001186.1/1355449-1355630 CUCAAAGGUAGAGGCCGCGAUAGGAAAGAGUAAGCUAUGGGAGAUUUAAUGGAAUCUGUGAUCAUAGGUUGAAAGGGACUAUUGCCGAAAUAUAAGAAUAACCAUCUUAUUCAUAUAUUGGGACUACAUUGAAUAAAUGUAGUACUGUCAUAAGAUUUAUUUUAUGGAGAGCUAUUUGGAGA ................................(.(...............................).)................(..(.........................................(...)................................))............. >AE008691.1/719320-719498 CGCAUAAAUAGAGGAGCUGCCAAGCAUGUAUUUGGCGAGGUGUUAAGGAGAAGAACCUCCAAUACUCGCUGAAGAAGGUUUGGCUGCCGAAAGGGUGAGCUUGUUCUUGAGCUCAUCCUUGGUGGUAAACACAAAGUUUACCACUGUCAUGGGACCUCCCAUGAAGCGCUAUUUAUGCA ............................(.(.........................................).)............(..(.......................................(...).............................))............. >CP000029.1/981298-981477 AGAUUUUGAUGAGGCGCAUCAAUCAUGAGUAAACUUUAGAUAAUUUGUCUGCUAACAAUUAUAGAGUUAAAAGGGUGAGAUGCCGAAAUGAUUCAUAAUAGCAGUUAUGAAUCGUUGGACUUAAUGGUUAAGAGCUAUAAGUUUGUCAUUAUUAUUAAAUAAUGGAGUGCAUCACUUGUA ...........................(.(......................................)).............(..(.........................................(..).................................))............. >CP000002.3/2878377-2878198 GGUGAAGAUAGAGGUGCGAACUUCAAGAGUAGGCUUGAUGAGGAAGAUGGAUUCCGAUGAAGAAAGCCGAAAGGGGAGCGUCGCCGAAGCGGGGAAAAAUCCACUCGUUUUUCCUGCUGGCUUUACAUUGAAUAAAUGUGAGGCUGUCAAGAAAUCAUUUCUUGGAGAGCUAUCUCGUUG ....................................(.(......................)).....(..(.............(...)..............)).......................................................................... >AF270308.1/2156-2331 AAUAGAGUUAGAGGUUGCAUUAUUAAUGACUAACUUAUCAGAAGUCGUAUGGGACAUGUGUUGAAUAAGUGAAAGGUAAUAAUGCCGAAAUGAUGUUAUUUCCAUAAAUUAGCAUUGUUGGGACAACUUUCGAAUAGAAGUUGUACUGUCACUUUAUGUGAUGUGCUACCUUAUAU ...........................(.(......................................)....)...........(..(..........................................(...).........................))............. >CP000923.1/1076332-1076143 AGGUGAGGUAGAGGCGCGGGUUAUCAAGAGUAGUAUACCAGAGGUAUUUAAGGGCCGAUGAAGGUAUAUGAAAGGGAUGCUCGCCGAAGCGCGUAAAUUCCUUAAAGUUUACGCAGCUGGGCCUAUGCCGAAUAGGUAUAGGACUGUCACUGGAGGUUUCCCGAGCCUUCAGUGAAGAGCUAUCUCGCUA ...............................(.(.................................).)..............(..(.........................................(...).........................................))............. >AF269536.1/680-500 AAUAGAGUUAGAGGUUGCAUUAUUAAUGACUAACUUAUCAGAAGUCGUAUGGGACAUGUGUUGAAUAAGUGAAAGGUAAUAAUGCCGAAAUGAUGUUAUUUCCAUAAAUUAGCAUUGUGAAGUUGGUUGAACAAUAAAAACAUCACAACCACGAAUGCUUUCUUCAAUAUUUAUUUGAAUU ...........................(.(......................................)....)............(..(......................................(..)...............................))................ >AE008691.1/1930427-1930616 AGGUGAGGUAGAGGCGCGGGUCAUCAAGAGUAACAUGCCAGAGGUGUUAAGGGCCGAUGAAGGUGUGUGAAAGGGGUGCCCGCCGAAGCGCGUAAACUUCCUUAAGGUUUACGCAGCUGGGCCUAUGCCGAACAGGUAUAGGACUGUCACUGAAGGCUCCCCAGGCCUUCAGUGGAGAGCUAUCUCGCUA ...............................(.(................................).)..............(..(..........................................(...).........................................))............. >AL935263.2/928916-929097 AUCGAAAGAAGAGGAUGCGGUUAACAAUAGUAGCCGGCUGGAAGUGGGUCACCACUUAUGAAGGUCAGUGAACGGGGCAACCGCCGAAAUCGAUGGAUCAGUGACCGAUUCAUCCGUUGGGCCUUGGUUGAAUAAAUCAUGGACUGUCGCAGCUAGAAUAGUUGCGGGGCGCUAUCGACGAU ............................(.(...................................))................(..(..................................................................(...).......))..............
4		(.RA.) N(RR(A)) N(R(Y)) (.YNA.)			17	36.2
>AAOX01000015.1/22460-22639 AGUGAAGGUAGAGGUGCAAACUUCAUCAGUAAAAGCUUGGAGAAAGAUGAGUUUCCGUGAAAAGCUUUGAAAGGGAAUGUUUGCCGAAGAAAAGGAAGUCUCAUUUCUUUCUUUUCUGGUCCUGUAUUGAAUAAAUACUGGAUUGUCAAGACAGCGCCGUCUUGGAGAGCUAUCUCACUG ...........................(.(.......................................)).............(..(...........(....).......................(...)................................))............. >CP001186.1/1355449-1355630 CUCAAAGGUAGAGGCCGCGAUAGGAAAGAGUAAGCUAUGGGAGAUUUAAUGGAAUCUGUGAUCAUAGGUUGAAAGGGACUAUUGCCGAAAUAUAAGAAUAACCAUCUUAUUCAUAUAUUGGGACUACAUUGAAUAAAUGUAGUACUGUCAUAAGAUUUAUUUUAUGGAGAGCUAUUUGGAGA ................................(.(...............................).)................(..(...........(.....).......................(...)................................))............. >CP000923.1/1076332-1076143 AGGUGAGGUAGAGGCGCGGGUUAUCAAGAGUAGUAUACCAGAGGUAUUUAAGGGCCGAUGAAGGUAUAUGAAAGGGAUGCUCGCCGAAGCGCGUAAAUUCCUUAAAGUUUACGCAGCUGGGCCUAUGCCGAAUAGGUAUAGGACUGUCACUGGAGGUUUCCCGAGCCUUCAGUGAAGAGCUAUCUCGCUA ...............................(.(.................................).)..............(..(...........(....)........................(...).........................................))............. >AASA01000017.1/10332-10501 ACAAAUUGUAGAGGUGCGAAUUCAAUAAGUAUUUCUUCUGAGUGGAAAACGAUGAAGGGGAAGGAAAGGUGAAUUUGCCGAAAUCAAUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUGUCGAAAGAAACGACACUGUCGUAGUAAAUGCUACGGAGUGCUACUGUUAGG ...........................(.(..................................))............(..(...........(...).......................(..)..............................))............. >EF419299.1/175-1 AAAAGAGUUAGAGGUUGCGUCUUUAAUUAGUAACACUUCAGAAGUUAUUAAGGAACGUGUGUUGAAAGUGUGGAAGGUAAAGAUGCCGAAAUGAAUGAUACCCUUAAUUAUCAUUUGUUGGGACAGUUAUCGAAUAGAAACUGUACUGUCACAAUUUGUGAUGUGCUACCGACGG ...............................(.(...................................))...............(..(...........(....)........................(...).........................))............ >M93419.1/332-511 AGUGAAGAUAGAGGUGCGAACUUCAUCAGUAAAAGCUUGGAGAAGAAUGAGCUUCAAUGAAAAGCUUUGAAAGGGAACGUUCGCCGAAGUGAAGAAAAACUCAUUUUUUUCUUUGCUGGUCCUGCAUUUAAGAGAUGCCGGAUUGUCAAGGCGGUGCCGCCUUGGAGAGCUAUCUCACUG ...........................(.(.......................................)).............(..(...........(....).......................(...)................................))............. >AE008691.1/1930427-1930616 AGGUGAGGUAGAGGCGCGGGUCAUCAAGAGUAACAUGCCAGAGGUGUUAAGGGCCGAUGAAGGUGUGUGAAAGGGGUGCCCGCCGAAGCGCGUAAACUUCCUUAAGGUUUACGCAGCUGGGCCUAUGCCGAACAGGUAUAGGACUGUCACUGAAGGCUCCCCAGGCCUUCAGUGGAGAGCUAUCUCGCUA ............................(.(......................................))............(..(...........(.....)........................(...).........................................))............. >CP000416.1/1669940-1669758 UCGAAUAGAAGAGGCGCGACCAACAAGAGUCGCUUUCCGGAGAUGGGUCACAUUGCUGAUGGAAGGUUAAAGGGGCGGUCGCCGAAAUUUACGCAUUUUGACCGGAUGCGUGGGUUGGGUCCUGGUUGAACAAGUCAGGGACUGUCGCAGUCAAAUAAUCGGCUGCGGGGCGCUUUCAACGAU ...........................(.(......................................))............(..(...........(.....).......................(..)....................................)).............. >CP000569.1/516240-516411 ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ...........................(.(..................................))............(..(...........(...).......................(..)................................))............. >AE016827.1/1325416-1325239 UACACAUGUAGAGGUGCGAAUAUUAUAAGUAUUUUUCCAGAGUGGAUAACAAUGAAGGAAAUUGAAAGGAAUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAACUGGUUGGUAACGUCACCGAAAGGAACGUUACUGCCAUAGUCAUUUUUGAUUAACUAUGGAGCGCUACUCGUGGG ...........................(.(..................................))............(..(...........(...).......................(..)......................................))............. >CP000046.1/1759610-1759435 AAUUGAGUUAGAGGUUGCAUGUUUAAUUAGUAACUUGUCAGAAGUAUUUAUGGUACAUAAGUUGAACAAGUGAAAGGUAAAGAUGCCGAAAUAGAUAUAAACCAUAAAUUAUAUCUAUUGGGACAGUUUUCGAAUAGGAACUGUACUGUCACAGAAUGUGAUGUGCUACCUUAUAU ............................(.(.........................................))............(..(..........(.......)...........................................(...)....))............. >CP000002.3/3366091-3365915 UAGUGAGGUAGAGGUUGCGCGGAUGAUGAGUCGCAUGUGUGAGGCUGAUGGGGCCGAUGAUCAUAUGCAAAAGGCAUCAGCGCCGAAGCAUAAGGAAGCCAUUCAUUCUUUAUGCUGGGUCUGCAUUGAAUAAGUGCAGGACUGCCGCGGGUAUUCCCGCGGAGGGCUAUCCGGAGA ............................(.(.....................................)).............(..(..........(.....).......................(...)...............................))............ >AF270308.1/2156-2331 AAUAGAGUUAGAGGUUGCAUUAUUAAUGACUAACUUAUCAGAAGUCGUAUGGGACAUGUGUUGAAUAAGUGAAAGGUAAUAAUGCCGAAAUGAUGUUAUUUCCAUAAAUUAGCAUUGUUGGGACAACUUUCGAAUAGAAGUUGUACUGUCACUUUAUGUGAUGUGCUACCUUAUAU ........................(.(............................................)....)........(..(...........(.....)........................(...).........................))............. >BA000037.2/1373591-1373770 UAUCGACGUAGAGGCGCAAUGGUAAAGAGUAACUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGAAAGGUAUCCAUUGCCGAAGUGAAUUGCAUAUCAAAGCAGUUUGCUGGGGUUGCAUCCGAAAGGAACAACACUGCCAUAGUAUUUAAUGUAUAACUAUGGAGCGCUACUGUAGGU ...........................(.(...................................)).............(..(...........(...).......................(..)......................................))............. >AF269536.1/680-500 AAUAGAGUUAGAGGUUGCAUUAUUAAUGACUAACUUAUCAGAAGUCGUAUGGGACAUGUGUUGAAUAAGUGAAAGGUAAUAAUGCCGAAAUGAUGUUAUUUCCAUAAAUUAGCAUUGUGAAGUUGGUUGAACAAUAAAAACAUCACAACCACGAAUGCUUUCUUCAAUAUUUAUUUGAAUU ........................(.(............................................)....).........(..(..........(....)......................(..)...............................))................ >CP000436.1/843556-843727 UACAUAUGUAGAGGUGCGGCUGUUAUAAGUAAUUUUUUGAGUGGAUAACGAUGAAAAAAAUGAAAGGAAUAGUUGCCGAAAUCAAUUAAAAGUCAUUUUAAUUGGUUGGGGGCGUAUUCGAAAGAAACGUCACUGUCAUAGUAUUUAUCCACUAUGGAGCGCUACUGGUUAG ...........................(.(................................))............(..(..........(....).......................(..)..................................))............. >AE017143.1/992934-993104 ACAAAUUGUAGAGGUGCAAAUCCGAUAAGUAUUUCUUCUGAGUGGAAAGCGAUGAAGGGGAAGGAAAGGCGUAUUUGCCGAAAUCAAUUAAGCGUCAUCUUAGUUGGUUGGGGUCGUUGCCGAAAGGGACGACACUGUCGUAAUUCAAUAUUACGGAGUGCUACUAUUAGG ...........................(.(..................................))............(..(...........(...).......................(..)...............................)).............

>AE016827.1/1325416-1325239 UACACAUGUAGAGGUGCGAAUAUUAUAAGUAUUUUUCCAGAGUGGAUAACAAUGAAGGAAAUUGAAAGGAAUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAACUGGUUGGUAACGUCACCGAAAGGAACGUUACUGCCAUAGUCAUUUUUGAUUAACUAUGGAGCGCUACUCGUGGG .........................................................................................................................(..)..................................................... ..............................................................................(..(.......................................(..)......................................))............. ...........................(.(..................................))............(..(.......................................(..)......................................))............. ...........................(.(..................................))............(..(...........(...).......................(..)......................................))............. >BA000037.2/1373591-1373770 UAUCGACGUAGAGGCGCAAUGGUAAAGAGUAACUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGAAAGGUAUCCAUUGCCGAAGUGAAUUGCAUAUCAAAGCAGUUUGCUGGGGUUGCAUCCGAAAGGAACAACACUGCCAUAGUAUUUAAUGUAUAACUAUGGAGCGCUACUGUAGGU ...........................................................................................................................(..)..................................................... ................................................................................(..(.......................................(..)......................................))............. ...........................(.(...................................)).............(..(.......................................(..)......................................))............. ...........................(.(...................................)).............(..(...........(...).......................(..)......................................))............. >M93419.1/332-511 AGUGAAGAUAGAGGUGCGAACUUCAUCAGUAAAAGCUUGGAGAAGAAUGAGCUUCAAUGAAAAGCUUUGAAAGGGAACGUUCGCCGAAGUGAAGAAAAACUCAUUUUUUUCUUUGCUGGUCCUGCAUUUAAGAGAUGCCGGAUUGUCAAGGCGGUGCCGCCUUGGAGAGCUAUCUCACUG ................................................................................................................................(...)............................................... ....................................................................................(..(........................................(...)................................))............. ...........................(.(.......................................)).............(..(........................................(...)................................))............. ...........................(.(.......................................)).............(..(...........(....).......................(...)................................))............. >CP000569.1/516240-516411 ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG .........................................................................................................................(..)............................................... ..............................................................................(..(.......................................(..)................................))............. ...........................(.(..................................))............(..(.......................................(..)................................))............. ...........................(.(..................................))............(..(...........(...).......................(..)................................))............. >AE017143.1/992934-993104 ACAAAUUGUAGAGGUGCAAAUCCGAUAAGUAUUUCUUCUGAGUGGAAAGCGAUGAAGGGGAAGGAAAGGCGUAUUUGCCGAAAUCAAUUAAGCGUCAUCUUAGUUGGUUGGGGUCGUUGCCGAAAGGGACGACACUGUCGUAAUUCAAUAUUACGGAGUGCUACUAUUAGG .........................................................................................................................(..).............................................. ..............................................................................(..(.......................................(..)...............................))............. ...........................(.(..................................))............(..(.......................................(..)...............................))............. ...........................(.(..................................))............(..(...........(...).......................(..)...............................))............. >CP000046.1/1759610-1759435 AAUUGAGUUAGAGGUUGCAUGUUUAAUUAGUAACUUGUCAGAAGUAUUUAUGGUACAUAAGUUGAACAAGUGAAAGGUAAAGAUGCCGAAAUAGAUAUAAACCAUAAAUUAUAUCUAUUGGGACAGUUUUCGAAUAGGAACUGUACUGUCACAGAAUGUGAUGUGCUACCUUAUAU ........................................................................................................................................................(...)................... ......................................................................................(..(..............................................................(...)....))............. ............................(.(.........................................))............(..(..............................................................(...)....))............. ............................(.(.........................................))............(..(..........(.......)...........................................(...)....))............. >AF270308.1/2156-2331 AAUAGAGUUAGAGGUUGCAUUAUUAAUGACUAACUUAUCAGAAGUCGUAUGGGACAUGUGUUGAAUAAGUGAAAGGUAAUAAUGCCGAAAUGAUGUUAUUUCCAUAAAUUAGCAUUGUUGGGACAACUUUCGAAUAGAAGUUGUACUGUCACUUUAUGUGAUGUGCUACCUUAUAU ...................................................................................................................................(...)........................................ .....................................................................................(..(..........................................(...).........................))............. ...........................(.(......................................)....)...........(..(..........................................(...).........................))............. ........................(.(............................................)....)........(..(...........(.....)........................(...).........................))............. >CP000436.1/843556-843727 UACAUAUGUAGAGGUGCGGCUGUUAUAAGUAAUUUUUUGAGUGGAUAACGAUGAAAAAAAUGAAAGGAAUAGUUGCCGAAAUCAAUUAAAAGUCAUUUUAAUUGGUUGGGGGCGUAUUCGAAAGAAACGUCACUGUCAUAGUAUUUAUCCACUAUGGAGCGCUACUGGUUAG .......................................................................................................................(..)................................................. ............................................................................(..(.......................................(..)..................................))............. ...........................(.(................................))............(..(.......................................(..)..................................))............. ...........................(.(................................))............(..(..........(....).......................(..)..................................))............. >AASA01000017.1/10332-10501 ACAAAUUGUAGAGGUGCGAAUUCAAUAAGUAUUUCUUCUGAGUGGAAAACGAUGAAGGGGAAGGAAAGGUGAAUUUGCCGAAAUCAAUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUGUCGAAAGAAACGACACUGUCGUAGUAAAUGCUACGGAGUGCUACUGUUAGG .........................................................................................................................(..)............................................. ..............................................................................(..(.......................................(..)..............................))............. ...........................(.(..................................))............(..(.......................................(..)..............................))............. ...........................(.(..................................))............(..(...........(...).......................(..)..............................))............. >AAOX01000015.1/22460-22639 AGUGAAGGUAGAGGUGCAAACUUCAUCAGUAAAAGCUUGGAGAAAGAUGAGUUUCCGUGAAAAGCUUUGAAAGGGAAUGUUUGCCGAAGAAAAGGAAGUCUCAUUUCUUUCUUUUCUGGUCCUGUAUUGAAUAAAUACUGGAUUGUCAAGACAGCGCCGUCUUGGAGAGCUAUCUCACUG ................................................................................................................................(...)............................................... ....................................................................................(..(........................................(...)................................))............. ...........................(.(.......................................)).............(..(........................................(...)................................))............. ...........................(.(.......................................)).............(..(...........(....).......................(...)................................))............. >AE008691.1/1930427-1930616 AGGUGAGGUAGAGGCGCGGGUCAUCAAGAGUAACAUGCCAGAGGUGUUAAGGGCCGAUGAAGGUGUGUGAAAGGGGUGCCCGCCGAAGCGCGUAAACUUCCUUAAGGUUUACGCAGCUGGGCCUAUGCCGAACAGGUAUAGGACUGUCACUGAAGGCUCCCCAGGCCUUCAGUGGAGAGCUAUCUCGCUA .................................................................................................................................(...)........................................................ ...................................................................................(..(..........................................(...).........................................))............. ...............................(.(................................).)..............(..(..........................................(...).........................................))............. ............................(.(......................................))............(..(...........(.....)........................(...).........................................))............. >CP000416.1/1669940-1669758 UCGAAUAGAAGAGGCGCGACCAACAAGAGUCGCUUUCCGGAGAUGGGUCACAUUGCUGAUGGAAGGUUAAAGGGGCGGUCGCCGAAAUUUACGCAUUUUGACCGGAUGCGUGGGUUGGGUCCUGGUUGAACAAGUCAGGGACUGUCGCAGUCAAAUAAUCGGCUGCGGGGCGCUUUCAACGAU ...............................................................................................................................(..).................................................... ..................................................................................(..(.........................................(..)....................................)).............. ...........................(.(......................................))............(..(.........................................(..)....................................)).............. ...........................(.(......................................))............(..(...........(.....).......................(..)....................................)).............. >CP000923.1/1076332-1076143 AGGUGAGGUAGAGGCGCGGGUUAUCAAGAGUAGUAUACCAGAGGUAUUUAAGGGCCGAUGAAGGUAUAUGAAAGGGAUGCUCGCCGAAGCGCGUAAAUUCCUUAAAGUUUACGCAGCUGGGCCUAUGCCGAAUAGGUAUAGGACUGUCACUGGAGGUUUCCCGAGCCUUCAGUGAAGAGCUAUCUCGCUA .................................................................................................................................(...)........................................................ ....................................................................................(..(.........................................(...).........................................))............. ...............................(.(.................................).)..............(..(.........................................(...).........................................))............. ...............................(.(.................................).)..............(..(...........(....)........................(...).........................................))............. >CP000002.3/3366091-3365915 UAGUGAGGUAGAGGUUGCGCGGAUGAUGAGUCGCAUGUGUGAGGCUGAUGGGGCCGAUGAUCAUAUGCAAAAGGCAUCAGCGCCGAAGCAUAAGGAAGCCAUUCAUUCUUUAUGCUGGGUCUGCAUUGAAUAAGUGCAGGACUGCCGCGGGUAUUCCCGCGGAGGGCUAUCCGGAGA ...............................................................................................................................(...)............................................. ...................................................................................(..(........................................(...)...............................))............ ............................(.(.....................................)).............(..(........................................(...)...............................))............ ............................(.(.....................................)).............(..(..........(.....).......................(...)...............................))............ >AF269536.1/680-500 AAUAGAGUUAGAGGUUGCAUUAUUAAUGACUAACUUAUCAGAAGUCGUAUGGGACAUGUGUUGAAUAAGUGAAAGGUAAUAAUGCCGAAAUGAUGUUAUUUCCAUAAAUUAGCAUUGUGAAGUUGGUUGAACAAUAAAAACAUCACAACCACGAAUGCUUUCUUCAAUAUUUAUUUGAAUU ................................................................................................................................(..)................................................. ......................................................................................(..(......................................(..)...............................))................ ...........................(.(......................................)....)............(..(......................................(..)...............................))................ ........................(.(............................................)....).........(..(..........(....)......................(..)...............................))................ >CP001186.1/1355449-1355630 CUCAAAGGUAGAGGCCGCGAUAGGAAAGAGUAAGCUAUGGGAGAUUUAAUGGAAUCUGUGAUCAUAGGUUGAAAGGGACUAUUGCCGAAAUAUAAGAAUAACCAUCUUAUUCAUAUAUUGGGACUACAUUGAAUAAAUGUAGUACUGUCAUAAGAUUUAUUUUAUGGAGAGCUAUUUGGAGA ..................................................................................................................................(...)............................................... .....................................................................................(..(.........................................(...)................................))............. ................................(.(...............................).)................(..(.........................................(...)................................))............. ................................(.(...............................).)................(..(...........(.....).......................(...)................................))............. >EF419299.1/175-1 AAAAGAGUUAGAGGUUGCGUCUUUAAUUAGUAACACUUCAGAAGUUAUUAAGGAACGUGUGUUGAAAGUGUGGAAGGUAAAGAUGCCGAAAUGAAUGAUACCCUUAAUUAUCAUUUGUUGGGACAGUUAUCGAAUAGAAACUGUACUGUCACAAUUUGUGAUGUGCUACCGACGG ...................................................................................................................................(...)....................................... ......................................................................................(..(.........................................(...).........................))............ ...............................(.(...................................))...............(..(.........................................(...).........................))............ ...............................(.(...................................))...............(..(...........(....)........................(...).........................))............ >J03294.1/2297-2476 GGUGAAGAUAGAGGUGCGAACUUCAAGAGUAUGCCUUUGGAGAAAGAUGGAUUCUGUGAAAAAGGCUGAAAGGGGAGCGUCGCCGAAGCAAAUAAAACCCCAUCGGUAUUAUUUGCUGGCCGUGCAUUGAAUAAAUGUAAGGCUGUCAAGAAAUCAUUUUCUUGGAGGGCUAUCUCGUUG ................................................................................................................................(...)............................................... ...........................................................(..(.................................................................(...)..........))................................... ......(.(................).)..............................(..(..................................................................(...)...........)).................................. >ABCF01000065.1/4547-4725 AGUGGUGAUAGAGGUGCGGACUUUCAUCAGUAGAUGCUUCGAGGAGUAUGGGCUCUUAUGAAGGGUAUCGAAAGGGAAAUUCGCCGAAGUGGAAGCAGGCUCAUAUCUGUUUGCGCUGGUUCUGUGUUUAAGAGAUGCAGGAUUGUCAAGAUUAACAGUCUUGGAGAGCUAUCUCACGU ........................................................................................................................................................(...)...................... ....................................................................................(..(................................................................(...)....))................ ............................(.(.....................................))..............(..(................................................................(...)....))................ >AE004439.1/1026545-1026371 UACUUGUGUAGAGGAGCGAUCACUAUAAGUAUUUUUUCUGAGUGGAUAACGAAGAGGAAAAAGGAAAGGAGUGACCGCCGAAAUCAAUUGAAAGUCAUUUUGAUUGGUUGGUGGCGUAUUCGAAAGGAACGUCAUUGUCAUAGUCUUUUUUAAACUAUGGAGCGCUACUGGUUGG .........................................................................................................................(..).................................................. ..............................................................................(..(.......................................(..)...................................))............. ...........................(.(..................................))............(..(.......................................(..)...................................))............. >BA000004.3/1819757-1819575 AGUGAGGAUAGAGGUGCAAAAACCAAGAGUACACAAUUGGAGGAGAAUGAGAUCCGUUGAGAAUUGUGGAAAGGGGAAUUUGCCGAAGCUGGAAGAAUCUCAUGUUCUGAAGGCUGGUUCUGUAUUAAAUAAAUACAGAACUGUCAUAUAGCGGAUGUUGCUAUAUGGAGGGCUAUCUCACGC ..............................................................................................................................(...).................................................... ...........................................................................................................(..(...............(...)...............))................................... .............................................................(.(......................))...................(..(...............(...)...............))................................... >AE008691.1/719320-719498 CGCAUAAAUAGAGGAGCUGCCAAGCAUGUAUUUGGCGAGGUGUUAAGGAGAAGAACCUCCAAUACUCGCUGAAGAAGGUUUGGCUGCCGAAAGGGUGAGCUUGUUCUUGAGCUCAUCCUUGGUGGUAAACACAAAGUUUACCACUGUCAUGGGACCUCCCAUGAAGCGCUAUUUAUGCA ..................................................................................................................................(...)............................................ .......................................................................................(..(.......................................(...).............................))............. ............................(.(.........................................).)............(..(.......................................(...).............................))............. >CP000029.1/981298-981477 AGAUUUUGAUGAGGCGCAUCAAUCAUGAGUAAACUUUAGAUAAUUUGUCUGCUAACAAUUAUAGAGUUAAAAGGGUGAGAUGCCGAAAUGAUUCAUAAUAGCAGUUAUGAAUCGUUGGACUUAAUGGUUAAGAGCUAUAAGUUUGUCAUUAUUAUUAAAUAAUGGAGUGCAUCACUUGUA ................................................................................................................................(..)................................................ ...................................................................................(..(.........................................(..).................................))............. ...........................(.(......................................)).............(..(.........................................(..).................................))............. >AL935263.2/928916-929097 AUCGAAAGAAGAGGAUGCGGUUAACAAUAGUAGCCGGCUGGAAGUGGGUCACCACUUAUGAAGGUCAGUGAACGGGGCAACCGCCGAAAUCGAUGGAUCAGUGACCGAUUCAUCCGUUGGGCCUUGGUUGAAUAAAUCAUGGACUGUCGCAGCUAGAAUAGUUGCGGGGCGCUAUCGACGAU ..........................................................................................................................................................(...)....................... ....................................................................................(..(..................................................................(...).......)).............. ............................(.(...................................))................(..(..................................................................(...).......)).............. >FQ670178.1/927246-927070 UACAAAAGUAGAGGCGCAAUUAUUAUAAGUAUUUUUUCAGAGUGGAUAACGAAGAAGAAAAAAGAAAGGAAUAGUUGCCGAAAUCAAAUAAAAGUCGUUUUGUUUGGUUGGUGGCGUGCUCGAAAGGGGCGACACUGUCAUAGUUUUUCUGAUUAACUAUGGAGUGCUACGGUUGUU .........................................................................................................................(..).................................................... ..............................................................................(..(.......................................(..).....................................))............. ...........................(.(..................................))............(..(.......................................(..).....................................))............. >AE005176.1/2276232-2276414 CACAUCGAUAGAGGUCGCAACUGAUAUGAAUCUACGCCGAGUUGGAGCACAACAAAGACGCGUAUUUAGAGGAGGAGAGGUUGCCGAAAGAAUUUUGUUGCUCAGCAAGGUUCUUGGGCUAGUGAGAAAAACUCACUAGACUGUCGCAAAUGGUUAAUAACCAUGCGGAGGGCUAUUCGUUCA ..........................................................................................................................................................(...)........................ ....................................................................................(..(..................................................................(...)..........))............ ....................................................................................................................(.(...................).).....(..(....(...)....)).................. >AF306669.1/1019-1194 AUAUUUUGAUGAGGCGCAUCAAUCAUGAGUAAAGUUUAGAUUACUGUCUGCUAACAGCUAAAUUUGAAAGGGUGCGAUGCCGAAGCAAUUAUAAUAGCAGUUAUAAUUUGUUGGACUUUUUGGUUAAGAGCUGAGAGUUUGUCAUUAUUUAAAAAUAAUGGAGUGCAUCACUUGUA .....................................................................................................................................................(..)....................... ................................................................................(..(.................................................................(..)........))............. ...........................(.(....................................))............(..(.................................................................(..)........))............. >ABDQ01000005.1/49327-49153 AACUAAGAUAGAGGUGCGAGAUUUAAGAGUAGUAUUAUGGAGUUAAGUGCUAAGAAGUAAUAAGAAAGGAAAUUUCGCCGAAGCUUAUAGAUAAUACUUUAAUGCUAUUUGCUGGGAUUACAUAAAAUAUAUGUAAGACUGUCACAAAUAAAGUUUGUGGAGAGCUAUUAUUUUA ....................................................................................................................................................(...)...................... ..............................................................................(..(..................................................................(...).......))............. ...........................(.(..................................))............(..(..................................................................(...).......))............. >CP000002.3/2878377-2878198 GGUGAAGAUAGAGGUGCGAACUUCAAGAGUAGGCUUGAUGAGGAAGAUGGAUUCCGAUGAAGAAAGCCGAAAGGGGAGCGUCGCCGAAGCGGGGAAAAAUCCACUCGUUUUUCCUGCUGGCUUUACAUUGAAUAAAUGUGAGGCUGUCAAGAAAUCAUUUCUUGGAGAGCUAUCUCGUUG .................................................................................................................................(...).............................................. ....(..(.........................................................................................................................(...)..........................................)).. ....................................(.(......................)).....(..(.............(...)..............)).......................................................................... >AAKK02000085.1/12844-12662 UGUUGCCGUAGAGGCGCGGUCUCGAAGAGUAGCUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGGAAGGCGAAGAUUGCCGAAGUAAGUAACUCAUCAAAGUUACUUGCUGGGGUUGUAUCUGAAAGGAACAACACUGCCAUAGUAUAUAUUCACAUUAAACUAUGGAGCGCUACUGUAGGG ........................................................................(...).......................................................................................................... ................................................................(..(....(...)............................................................).)........................................... >AM263198.1/783761-783564 UGGUGAGGUAGAGGUUGCAAGAUUCACAAGUAAUUUUUUAGAAGCGAAACAAAGACGCUGAUGACAAAGAAUGAACAGGAUGAUUGCCGAAGUGACUAUUUUCUCUUUGUUUAGAAAUAGUUGUUGGGACAGUUUCCUAAAGGAGCUGGACUGCUAUAAGAAUUUGUCGAAAUUUCUUAUAGGUGUGCUAUCUGACAA ........................................................................(..).......................................................................................................................... ..................................................................(..(..(..)..)....).................................................................................................................. >AAWP01000069.1/5541-5721 UAUUGCCGUAGAGGUGCAGUCUCGAAGAGUAGCUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGGAAGGCGAGGAUUGCCGAAGUAGGUGGCCUAUCGAAGCCACUUGCUGGGGUUGUCUCUGAAAGGAACAACACUGCCAUAGUAUAUUUACAUUAAACUAUGGAGCGCUACUGUAGGG ...........................................................................................................................(..)...................................................... ...............................................................(..(........................................................(..)..........)).......................................... >X15196.1/270-75 GCAGCCAGAAGAGGCGCGUUGCCAAGUAACGGUGUUGGAGGAGCCAGUCCUGUGAUAACACCUGAGGGGGUGCAUCGCCGAGGUGAUUGAACGGCUGGCCACGUUCAUCAUCGGCUACAGGGGCUGAAUCCCCUGGGUUGUCACCAGAAGCGUUCGCAGUCGGGCGUUUCGCAAGUGGUGGAGCACUUCUGGGUGA ............................................................................................................................(..).................................................................... ........(..(................................................................................................................(..)..........................................................))........ >AL591976.1/186683-186486 UGGUGAGGUAGAGGUUGCGAGAUGCACUAGUAAUUUUUUCGAGGCGAAACAAAGACGCCGACGACAAAGAAUGAACAGGUUGAUCGCCGAAGUGACUAUUUUCUCUUUGUUUAGAAAUAGUUGUUGGGACAGUUUCCUAAAGGGGCUGGACUGCUAUAAGAAUUUGUCGAAAUUUCUUAUAGGUGUGCUAUCUGACAA ........................................................................(..).......................................................................................................................... ................................................................(..(....(..)....)).................................................................................................................... >BA000031.2/1190723-1190903 UGUUGCCGUAGAGGCGCAGUCUCGAAGAGUAGCUAUUAUUGGGGUGAUGCCAAUGAAUAAUAGUGGAAGGCGAAGAUUGCCGAAGUAAGUCGUAUAUCAAAACGCCUUGCUGGGGUUGUAUCUGAAAGGAACAACACUGCCAUAGUAUAUUUACAUUAAACUAUGGAGCGCUACUGUAGGG ........................................................................(...)........................................................................................................ ...............................................................(..(.....(...)............................................................)).......................................... >AP006716.1/1558409-1558233 AGAAAUUGAUGAGGCGCAUCAAUCAUCAGUAUAUAUUAGAUAAACUGUCUGCAACAGCUAAUAUAGAAAGGGUGCGAUGCCGAAAUGAAUCAUAAUCGCAGCUAUGAUUUGUUGGACUUUGUGGUUAAGAGCUGAAAGUUUGUCAUUAUUAUUUAAUAAUGGAGUGCAUCACUUGUA .............................................................................................................................(..)................................................ .................................................................(..(............(..)............)...)........................................................................... >AALE02000022.1/49827-50019 UAAGCCAGAAGAGGUGCGUCGCCCAGGUAAAGUGUCAGAGGAGCCGUGAUCCGCUGAAGACAUUCGAGGGGGAGCGACGCCGAGACACGGUGAUUUCGGCCAUCAGCGUGUCGACUGCAGGGGCUGAAUCCCCUGGGUUGUCACCAGUGCCGUUCCUUUAGGGCGGUCAACAAGGUGGAGCGCUUCUGGGUGU ............................................................................................................................(..)................................................................. ......(..(..................................................................................................................(..)..........................................................))..... >CP000425.1/2337129-2337310 CACAUCGAUAGAGGUCGCAACUGAUAUGAAUCUACGCCGAGUUGGAGCACAACAAAGACGCGUAUUAGAGGGGGAGAAGUUGCCGAAAGAAUUUUGACGCUCAGCAAAGUUCUUGGGCUAGUGAGGAAAACUCACUAGACUGUCGCAAAUGGUUAAGAACCAUGCGGAGGGCUAUUCGUUCA .............................................................................................................................(...).................................................... .................................................................................................................................................(..(....(...)....)).................. >AP008934.1/1400599-1400421 AGGUUUUGAUGAGGCGCAUCAAUCAUUAGUAAAGAUUAGAAGAAUCUGACUGCUAGCAGCUAAUUUUGAAAGGGUGAGAUGCCGAAACGGUUAUAAUAGCAGCUUAUAACAUGUUGGACUUUAUGGUUAAGAGCUAAGAGUCUGUCAUUAUUUUAAGAUAAUGGAGUGCAUCACUUGUA ...................................................................................................................(..)............................................................ ..................................................................................(..(......(...).................))............................................................... >AL596166.1/112469-112272 UGGUGAGGUAGAGGUUGCGAGAUGCACUAGUAAUUUUUUCGAGGCGAAACAAAGACGCCAAUGACAAAAAACGAACAGGUUAAUCGCCGAAGUGACUAUUUUUUCUUUGUAUCGAAAUAGUUGUUGGGACAGUUUCCUAAAGGAGCUGGACUGCUAUAAGAAUUUGUCGAAAUUUCUUAUAGGUGUGCUAUCUGACAA .........................................................................................................................................(..)......................................................... ........(..(.............................................................................................................................(..)...............................................))........ >BX950851.1/4451556-4451748 CAAGCCAGAAGAGGCGCGUCGCCCAGGUAAGAUAUCGGAGGAACCGUAAUCCGCUGAUGAUAUCCGAGGGGGAGCGACGCCGAGAUGCGGUGAAAUUCGGCUUUCACCCUAUCGACUACAGAGGCUGAAUCCUCUGGGUUGUCACCGGAUUCGUCCUGAUGGACGUCCAGCAAGGUGGAGCGCUUCUGGGUGU .............................................................................................................................(..)................................................................ ......(..(...................................................................................................................(..).........................................................))..... >CP000826.1/4955718-4955911 CAAGCCAGAAGAGGUGCGUCGCCCAGGUAGAGUGUCAGAGGAGCCGUUGUCCAAUGACGGCGCUUGAGGGGGAGCGACGCCGAGGUAAGGUGAUGUGCGGCAUUCAUCGUAUCGACUACAGGGGCUGAAUCCCCUGAGUUGUCACCAGGGAUUGUCCGUAGGGGCAAUCAGCAAGGUGGGGCGCUUCUGGGUGU .............................................................................................................................(..)................................................................. >U00006.1/98763-98567 CAGGCCAGAAGAGGCGCGUUGCCCAAGUAACGGUGUUGGAGGAGCCAGUCCUGUGAUAACACCUGAGGGGGUGCAUCGCCGAGGUGAUUGAACGGCUGGCCACGUUCAUCAUCGGCUACAGGGGCUGAAUCCCCUGGGUUGUCACCAGAAGCGUUCGCAGUCGGGCGUUUCGCAAGUGGUGGAGCACUUCUGGGUGA ............................................................................................................................................................................(..)..................... >X00008.1/296-492 CAGGCCAGAAGAGGCGCGUUGCCCAAGUAACGGUGUUGGAGGAGCCAGUCCUGUGAUAACACCUGAGGGGGUGCAUCGCCGAGGUGAUUGAACGGCUGGCCACGUUCAUCAUCGGCUAAGGGGGCUGAAUCCCCUGGGUUGUCACCAGAAGCGUUCGCAGUCGGGCGUUUCGCAAGUGGUGGAGCACUUCUGGGUGA ............................................................................................................................(...).................................................................... >AL009126.3/3421348-3421169 CAGUGAGGUAGAGGUUGCGCGGAUGAUGAGUCACACAUGCUAGGCUGACAGGGGCUGUUAAACAUGUGUAAAAGGCAUCAGCGCCGAAGUGUGGAGAAAGCCGAUCCUUCUCUAUGCUGGGACUGUAUCUGAAUAAGUGCAGGACUGCCGCGUGCUUUUUCGCGGAGGGCUAUCCGGAGA ...............................................................................................(..)................................................................................. >AAMR01000029.1/5147-5324 AUCGCACGUAGAGGCGCAAUUAUAAAAAGUAGUUUUCGUUGGGGUGAUGCCAAUGAGCGGGAAUGAAAGGUCUAAUUGCCGAAGUAAAUUGUAUAUCUAAGCAAUUUGCUGGGGUUGUGCUCAAUAGGUACAACACUGCCAUAGUCUUAAUUUUAAACUAUGGAGCGCUACUGUAGGG .........................................................................................................................(...).................................................... >CP000647.1/4829910-4829675 AUUGCCAGAAGAGGUGCGUUGCCCAGGUAACCGUAUUGGAGGAACCAGUCCGGGGAAGAUACGUGAGGGGGAGCAACGCCGAGGUGAAAGAGCGUCUGGUCACGCUCCUCGCCGGCCACAGGGGCUGAAUCCCCUGGGUUGUCACCAGAAACGUUCGCAGUCGGGCGUUUCAUACCCGAACACCUCAGCGCCCAAAGCGGUGAGUCGGGUCUACAAGGUGGAGCACUUCUGGGUGA ...............................................................................................................................................................................................(...)........................................

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	(.RA.)			< 0.001		1.17

CP000569.1/516240-516411 ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ...................................................................................................1........................................................................ .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.. 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
2	N(RR(A))			< 0.001		2.26

CP000569.1/516240-516411 ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ...................................................................................................1........................................................................ .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.. 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
3	N(R(Y))			< 0.001		1.68

CP000569.1/516240-516411 ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ...................................................................................................1........................................................................ .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.. 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
4	(.YNA.)			0.00635		1.12

CP000569.1/516240-516411 ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ACAAAUCGUAGAGGUGCAAAUCCGAUAAGUACUUUUUCUGAGUGGAGAACGAGGAGGAAAAAGGAAAGGCGUAUUUGCCGAAAUCAGUUAAGCGUCAUCUUAAUUGGUUGGGGUCGUUACCGAAAGGGACGACACUGUCGUAAUCCUUGUAUUACGGAGUGCUACUGCUAGG ...................................................................................................1........................................................................ .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.. 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	(().N.()()().G.)			< 0.001		1.23e+03
2	G(YCG)A			0.00139		14.8
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).