D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

Iron response element I (Rfam: RF00037)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

(.CNNUG.)
(.UU.().RA.)
(.UY.().RA.)
((U)U)G
Y(YY(G))

100.0
100.0
100.0
98.3
96.7

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 99.7 %
(± 0.235 %)

Decision tree:

5-fold cross-validation: 96.3 %
(± 1.81 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 98.3 %
(± 1.52 %)

of AAWZ02023447.1/15493-15528

AAWZ02023447.1/15493-15528

UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG
((((..(..(...(.(......).)..).)..))))
.........1.........2.........3......
123456789012345678901234567890123456

abstract shape: `()`

					Number of sequences
	Structure	ORBs			(out of 60)	(%)
1		(.CNNUG.)			60	100.0
>AB073371.1/2-37 CGGUCUCCUGCUUCAACAGUGCUUGGACGGAGCCCG ...............(......)............. >AAYZ01376712.1/735-701 CUGUGUCUUGCUUCAACAGUGUUUGAAUGGAACAG ...............(......)............ >AY032659.1/108-140 UCGCCUUCUGCACCAGUGUGUGUAAAGGCCUGA ............(......)............. >D15071.1/10-45 CGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCCG ...............(......)............. >BX934496.1/23-58 CGGGUUCCUGCGUCAACAGUGCUUGGACGGAACCGG ...............(......)............. >AALT01281908.1/825-859 CUGUCUCUUGCUUCAACAAUGUUUGGACGGAGCAG ...............(......)............ >BAAE01241509.1/2881-2846 GAAGUUCUUGCUUCAACAGUGUUUGAACGGAACUUC ...............(.....).............. >ABRO01415732.1/1669-1703 CUGUGUCUUGCUUCAACAGUGUUUGGACAGCACAC ...............(......)............ >ABGA01194773.1/10307-10273 GGGCUUCCUGCUUCAACAGUGCUUGAACGGAACCC ...............(......)............ >AF285177.1/2-35 UGUUCCUGCUUCAACAGUGCUUGGACGGAACCCG .............(......)............. >AAIY01636926.1/362-328 CUGUGUCCUGCUUCAACAGUGUUUGAACGGAACAG ...............(......)............ >AAPY01271888.1/1826-1792 CGGUUUCCUGCAUCAACAGUGCUUGAACGGAACCG ...............(......)............ >AAWR02009010.1/38752-38718 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCG ...............(......)............ >AB371410.1/64-99 CGGUUUCUUGCUUCAACAGUGCUUGGACGGAAGCCG ...............(......)............. >AJ276505.2/120813-120779 CUGUGUCUUGCUUCAACCGUGUUUGGACGGAACAG ...............(......)............ >M14211.1/193-227 GGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCC ...............(......)............ >BT073905.1/31-66 GAAGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ...............(......)............. >BC152596.1/22-57 GAGGUUCUUGCUUCAACAGUGAUUGAACGGAACUUC ...............(......)............. >BT047622.1/7-41 GGGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ..............(......)............. >AANH01004160.1/35803-35838 GGAGUUCUUGCUUCAACAGUGUUUGAACGGAACUUU ...............(......)............. >AAFR03019774.1/239510-239545 GAGGUUCUUGCUUCAGCAGUGUUUGGACGGAACCUC ...............(.....).............. >ABRR01372656.1/429-395 CUGUCUCUUGUUUCAACAGUGUUUGGACAGAACAG ...............(......)............ >AANG01554495.1/4632-4598 CUGUCCCUUGCUUCAACAGUGUUUGGACAGAACAG ...............(......)............ >AAQQ01605438.1/3746-3780 CUGCUUCUUGCUUCAACAGUGUUUGGACGGAACAG ...............(......)............ >ABAV01011851.1/25472-25507 CCGUUUUGUGCUUCAACAGUGAUUGAACCGAAACAG ...............(......)............. >AANN01127411.1/370-404 CUGUUUCUUGCUUCAACAGUGUUUGGACGGAACAG ...............(.....)............. >AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG ...............(......)............. >EF628371.1/43-77 GAGGGUCUUGCUUCAACAGUGAUUGAACGGAACUC ...............(......)............ >ABRP01011077.1/2966-3000 UUGUCUCUUGCUUCAACAGUGUUUGGACAGAACAG ...............(......)............ >BC063337.1/26-62 CGCAGUUCUUGCUUCAACAGUGCUUGAACGGAACUCG ................(......)............. >DQ659631.1/11-46 GUUGUUCUUGCUUCAACAGUGUUUGAACGGAACUUC ...............(......)............. >AAHY01029141.1/15302-15336 CUGUGUCUUGCUUCAACAGUGUUUGGACGAAACAG ...............(.....)............. >AAVX01381105.1/393-360 UGUUCUCGCUUCAACAGUGCUUGAACGGAACUGG .............(......)............. >ABQF01062964.1/539-575 CCGCGUUCUCGCUUCAACAGUGCUUGAACGGAACCGG ................(......)............. >AAGE02004546.1/6487-6454 AGGUGUUUUGCUUCAACAUUGUUUGAACGACCGU ...............(......)........... >BT081799.1/21-57 CCGAGUUCUUGCUUCAACAGUGAUUGAACGGAGCCGG ................(......)............. >AF068225.2/1-36 CGGUGUUUUGCUUCAACAGUGUUUGAACGAGCAUCG ...............(......)............. >AAGV020889339.1/949-914 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCCA ...............(......)............. >Y09188.1/1-35 CUGUCUCUUGCUUCAACAGUGUUUGGACGGAACAG ...............(......)............ >AY550979.1/1-34 UGGUUUUGCUUCAACAGUGAUUGAACGAGCAUCG .............(......)............. >AY260753.1/1-34 GUUACCUGCUUCAACAGUGCUUGAACGGCAACCU .............(......)............. >AAQR03095747.1/6073-6108 CAGUUUCCUGCUUCAACAGUGCUUGGACGGAAACGG ...............(......)............. >ABQO010588503.1/1800-1767 GGGUUUCCUGCUUCAACAGUGCUUGAACGGACCC ...............(......)........... >AY277900.1/12-47 CGAUGUUAUGCUUCAACAGUGAUUGAACGAGCAUCG ...............(......)............. >AL592437.7/34848-34882 CUGUUCCUUGCUUCAACAGUGUUUGGAUGGAACAG ...............(.....)............. >AAHX01094585.1/10740-10774 CUGUAUCUUGCUUCAACAGUGUUUGGACAGAACAG ...............(......)............ >ABRT010002577.1/1339-1305 CUGUCUCUUACUUCAACAGUGUUUGGAUGGAACAG ...............(......)............ >AAGW02057904.1/76866-76900 CUGUGUCUUGCCUCAACAGUGUUUGAACGGAACAG ...............(......)............ >AAPE02030929.1/24760-24794 UGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCA ...............(......)............ >AAGU03011944.1/23235-23201 CUGUUUCUUGCUUCAACAGUGCUUGGACGGAGCAG ...............(......)............ >ABDC01086142.1/996-1030 CUGUCUCCGGCUUCAACAGUGUUUGGACGGAACAG ...............(.....)............. >AF266195.1/11-46 GAGAUUCUUGCUUCAACAGUGUUUGAACGGAAUUUC ...............(......)............. >BT075303.1/10-45 AGGUUACCUGCUUCAACAGUGCUUGAACGGCAACCU ...............(......)............. >AANU01126896.1/12416-12450 CUGUAUCUUGCUUCAACAGUGUUUGGAUGGAACAG ...............(......)............ >ABRQ01098844.1/1724-1759 CGGUGUCCUGCUUCAACAGUGCUUGAACGGAACCCG ...............(......)............. >M55010.1/4-39 AGAGUUCUUGCUUCAACAGUGUUUGAACGGAACCCU ...............(......)............. >ABVD01450449.1/988-1023 UGGGUUCCUGCUUCAACAGUGCUUGAAUGGAACCCA ...............(......)............. >AAPN01199084.1/201-236 CGGUUUCCCGCUUCAACAGUGCUUGGACGGAAGCCG ...............(......)............. >ABRN01304445.1/359-393 CUGUCUCUUGCUUCAACAGUGUUUGAACAGAACAG ...............(......)............ >DQ437112.1/26-59 AGUUCUUGCUUCAACAGUGAUUGAACGGAACACU .............(......).............
2		(.CNNUG.) (.UU.().RA.)			58	96.7
>EF628371.1/43-77 GAGGGUCUUGCUUCAACAGUGAUUGAACGGAACUC .........(...(.(......).)..)....... >AAQQ01605438.1/3746-3780 CUGCUUCUUGCUUCAACAGUGUUUGGACGGAACAG .........(...(.(......).)..)....... >AAWR02009010.1/38752-38718 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCG .........(...(.(......).)..)....... >AB073371.1/2-37 CGGUCUCCUGCUUCAACAGUGCUUGGACGGAGCCCG .........(...(.(......).)..)........ >AANG01554495.1/4632-4598 CUGUCCCUUGCUUCAACAGUGUUUGGACAGAACAG .........(...(.(......).)..)....... >BT081799.1/21-57 CCGAGUUCUUGCUUCAACAGUGAUUGAACGGAGCCGG ..........(...(.(......).)..)........ >ABAV01011851.1/25472-25507 CCGUUUUGUGCUUCAACAGUGAUUGAACCGAAACAG .........(...(.(......).)..)........ >Y09188.1/1-35 CUGUCUCUUGCUUCAACAGUGUUUGGACGGAACAG .........(...(.(......).)..)....... >ABRP01011077.1/2966-3000 UUGUCUCUUGCUUCAACAGUGUUUGGACAGAACAG .........(...(.(......).)..)....... >AY032659.1/108-140 UCGCCUUCUGCACCAGUGUGUGUAAAGGCCUGA ....(....(..(......)..)...)...... >AALT01281908.1/825-859 CUGUCUCUUGCUUCAACAAUGUUUGGACGGAGCAG .........(...(.(......).)..)....... >ABGA01194773.1/10307-10273 GGGCUUCCUGCUUCAACAGUGCUUGAACGGAACCC .........(...(.(......).)..)....... >ABQO010588503.1/1800-1767 GGGUUUCCUGCUUCAACAGUGCUUGAACGGACCC .........(...(.(......).)..)...... >AAQR03095747.1/6073-6108 CAGUUUCCUGCUUCAACAGUGCUUGGACGGAAACGG .........(...(.(......).)..)........ >AF068225.2/1-36 CGGUGUUUUGCUUCAACAGUGUUUGAACGAGCAUCG .........(...(.(......).)..)........ >AF285177.1/2-35 UGUUCCUGCUUCAACAGUGCUUGGACGGAACCCG .......(...(.(......).)..)........ >AJ276505.2/120813-120779 CUGUGUCUUGCUUCAACCGUGUUUGGACGGAACAG .........(...(.(......).)..)....... >BT073905.1/31-66 GAAGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC .........(...(.(......).)..)........ >AAGV020889339.1/949-914 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCCA .........(...(.(......).)..)........ >AAIY01636926.1/362-328 CUGUGUCCUGCUUCAACAGUGUUUGAACGGAACAG .........(...(.(......).)..)....... >AAHX01094585.1/10740-10774 CUGUAUCUUGCUUCAACAGUGUUUGGACAGAACAG .........(...(.(......).)..)....... >AY260753.1/1-34 GUUACCUGCUUCAACAGUGCUUGAACGGCAACCU .......(...(.(......).)..)........ >AAGE02004546.1/6487-6454 AGGUGUUUUGCUUCAACAUUGUUUGAACGACCGU .........(...(.(......).)..)...... >ABQF01062964.1/539-575 CCGCGUUCUCGCUUCAACAGUGCUUGAACGGAACCGG ..........(...(.(......).)..)........ >AY277900.1/12-47 CGAUGUUAUGCUUCAACAGUGAUUGAACGAGCAUCG .........(...(.(......).)..)........ >BC152596.1/22-57 GAGGUUCUUGCUUCAACAGUGAUUGAACGGAACUUC .........(...(.(......).)..)........ >ABRR01372656.1/429-395 CUGUCUCUUGUUUCAACAGUGUUUGGACAGAACAG .........(...(.(......).)..)....... >AAGU03011944.1/23235-23201 CUGUUUCUUGCUUCAACAGUGCUUGGACGGAGCAG .........(...(.(......).)..)....... >D15071.1/10-45 CGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCCG .........(...(.(......).)..)........ >AAPE02030929.1/24760-24794 UGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCA .........(...(.(......).)..)....... >AAFR03019774.1/239510-239545 GAGGUUCUUGCUUCAGCAGUGUUUGGACGGAACCUC .........(...(.(.....).)...)........ >ABRT010002577.1/1339-1305 CUGUCUCUUACUUCAACAGUGUUUGGAUGGAACAG .........(...(.(......).)..)....... >BC063337.1/26-62 CGCAGUUCUUGCUUCAACAGUGCUUGAACGGAACUCG ..........(...(.(......).)..)........ >ABRQ01098844.1/1724-1759 CGGUGUCCUGCUUCAACAGUGCUUGAACGGAACCCG .........(...(.(......).)..)........ >DQ659631.1/11-46 GUUGUUCUUGCUUCAACAGUGUUUGAACGGAACUUC .........(...(.(......).)..)........ >M14211.1/193-227 GGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCC .........(...(.(......).)..)....... >AAYZ01376712.1/735-701 CUGUGUCUUGCUUCAACAGUGUUUGAAUGGAACAG .........(...(.(......).)..)....... >AANN01127411.1/370-404 CUGUUUCUUGCUUCAACAGUGUUUGGACGGAACAG .........(...(.(.....).)...)....... >AF266195.1/11-46 GAGAUUCUUGCUUCAACAGUGUUUGAACGGAAUUUC .........(...(.(......).)..)........ >AY550979.1/1-34 UGGUUUUGCUUCAACAGUGAUUGAACGAGCAUCG .......(...(.(......).)..)........ >M55010.1/4-39 AGAGUUCUUGCUUCAACAGUGUUUGAACGGAACCCU .........(...(.(......).)..)........ >BT075303.1/10-45 AGGUUACCUGCUUCAACAGUGCUUGAACGGCAACCU .........(...(.(......).)..)........ >ABVD01450449.1/988-1023 UGGGUUCCUGCUUCAACAGUGCUUGAAUGGAACCCA ........(....(.(......).)..)........ >AANU01126896.1/12416-12450 CUGUAUCUUGCUUCAACAGUGUUUGGAUGGAACAG .........(...(.(......).)..)....... >ABDC01086142.1/996-1030 CUGUCUCCGGCUUCAACAGUGUUUGGACGGAACAG ........(....(.(.....).)...)....... >AAPN01199084.1/201-236 CGGUUUCCCGCUUCAACAGUGCUUGGACGGAAGCCG .........(...(.(......).)..)........ >AAVX01381105.1/393-360 UGUUCUCGCUUCAACAGUGCUUGAACGGAACUGG .......(...(.(......).)..)........ >BT047622.1/7-41 GGGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ........(...(.(......).)..)........ >AANH01004160.1/35803-35838 GGAGUUCUUGCUUCAACAGUGUUUGAACGGAACUUU .........(...(.(......).)..)........ >ABRN01304445.1/359-393 CUGUCUCUUGCUUCAACAGUGUUUGAACAGAACAG .........(...(.(......).)..)....... >AAGW02057904.1/76866-76900 CUGUGUCUUGCCUCAACAGUGUUUGAACGGAACAG ......(......(.(......).)...)...... >DQ437112.1/26-59 AGUUCUUGCUUCAACAGUGAUUGAACGGAACACU .......(...(.(......).)..)........ >AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG .........(...(.(......).)..)........ >AL592437.7/34848-34882 CUGUUCCUUGCUUCAACAGUGUUUGGAUGGAACAG ......(......(.(.....).)....)...... >AB371410.1/64-99 CGGUUUCUUGCUUCAACAGUGCUUGGACGGAAGCCG .........(...(.(......).)..)........ >BAAE01241509.1/2881-2846 GAAGUUCUUGCUUCAACAGUGUUUGAACGGAACUUC ........(....(.(.....).)..)......... >AAHY01029141.1/15302-15336 CUGUGUCUUGCUUCAACAGUGUUUGGACGAAACAG .........(...(.(.....).)...)....... >ABRO01415732.1/1669-1703 CUGUGUCUUGCUUCAACAGUGUUUGGACAGCACAC .........(...(.(......).)..).......
3		(.CNNUG.) (.UU.().RA.) (.UY.().RA.)			45	75.0
>DQ659631.1/11-46 GUUGUUCUUGCUUCAACAGUGUUUGAACGGAACUUC ...(..(..(...(.(......).)..).)..)... >BT081799.1/21-57 CCGAGUUCUUGCUUCAACAGUGAUUGAACGGAGCCGG ....(..(..(...(.(......).)..))...)... >BT073905.1/31-66 GAAGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ...(..(..(...(.(......).)..).)..)... >AALT01281908.1/825-859 CUGUCUCUUGCUUCAACAAUGUUUGGACGGAGCAG ..(...(..(...(.(......).)..))...).. >M14211.1/193-227 GGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCC ...(..(..(...(.(......).)..))..)... >ABRR01372656.1/429-395 CUGUCUCUUGUUUCAACAGUGUUUGGACAGAACAG ..(...(..(...(.(......).)..).)..).. >Y09188.1/1-35 CUGUCUCUUGCUUCAACAGUGUUUGGACGGAACAG ..(...(..(...(.(......).)..).)..).. >AANU01126896.1/12416-12450 CUGUAUCUUGCUUCAACAGUGUUUGGAUGGAACAG ...(...(.(...(.(......).)..))..)... >AF266195.1/11-46 GAGAUUCUUGCUUCAACAGUGUUUGAACGGAAUUUC ...(..(..(...(.(......).)..).)..)... >M55010.1/4-39 AGAGUUCUUGCUUCAACAGUGUUUGAACGGAACCCU ...(..(..(...(.(......).)..).)..)... >ABVD01450449.1/988-1023 UGGGUUCCUGCUUCAACAGUGCUUGAAUGGAACCCA ...(..(.(....(.(......).)..).)..)... >AAGU03011944.1/23235-23201 CUGUUUCUUGCUUCAACAGUGCUUGGACGGAGCAG ...(..(..(...(.(......).)..))..)... >AF285177.1/2-35 UGUUCCUGCUUCAACAGUGCUUGGACGGAACCCG .(..(..(...(.(......).)..).)..)... >AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG ...(..(..(...(.(......).)..).)..)... >ABQO010588503.1/1800-1767 GGGUUUCCUGCUUCAACAGUGCUUGAACGGACCC ..(...(..(...(.(......).)..))..).. >AANH01004160.1/35803-35838 GGAGUUCUUGCUUCAACAGUGUUUGAACGGAACUUU ...(..(..(...(.(......).)..).)..)... >ABAV01011851.1/25472-25507 CCGUUUUGUGCUUCAACAGUGAUUGAACCGAAACAG ...(..(..(...(.(......).)..).)..)... >AAGV020889339.1/949-914 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCCA ...(..(..(...(.(......).)..).)..)... >AB073371.1/2-37 CGGUCUCCUGCUUCAACAGUGCUUGGACGGAGCCCG ....(..(.(...(.(......).)..))..).... >AANG01554495.1/4632-4598 CUGUCCCUUGCUUCAACAGUGUUUGGACAGAACAG ..(...(..(...(.(......).)..).)..).. >AJ276505.2/120813-120779 CUGUGUCUUGCUUCAACCGUGUUUGGACGGAACAG ..(....(.(...(.(......).)..).)..).. >BT047622.1/7-41 GGGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ..(..(..(...(.(......).)..).)..)... >D15071.1/10-45 CGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCCG ...(..(..(...(.(......).)..).)..)... >EF628371.1/43-77 GAGGGUCUUGCUUCAACAGUGAUUGAACGGAACUC ....(..(.(...(.(......).)..).)..).. >AAPN01199084.1/201-236 CGGUUUCCCGCUUCAACAGUGCUUGGACGGAAGCCG ...(..(..(...(.(......).)..).)..)... >AAIY01636926.1/362-328 CUGUGUCCUGCUUCAACAGUGUUUGAACGGAACAG ....(..(.(...(.(......).)..).)..).. >ABGA01194773.1/10307-10273 GGGCUUCCUGCUUCAACAGUGCUUGAACGGAACCC ..(...(..(...(.(......).)..).)..).. >AAQR03095747.1/6073-6108 CAGUUUCCUGCUUCAACAGUGCUUGGACGGAAACGG ...(..(..(...(.(......).)..).)..)... >ABRP01011077.1/2966-3000 UUGUCUCUUGCUUCAACAGUGUUUGGACAGAACAG ..(...(..(...(.(......).)..).)..).. >AAYZ01376712.1/735-701 CUGUGUCUUGCUUCAACAGUGUUUGAAUGGAACAG ...(...(.(...(.(......).)..))..)... >AB371410.1/64-99 CGGUUUCUUGCUUCAACAGUGCUUGGACGGAAGCCG ...(..(..(...(.(......).)..).)..)... >AAPE02030929.1/24760-24794 UGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCA ...(..(..(...(.(......).)..))..)... >ABQF01062964.1/539-575 CCGCGUUCUCGCUUCAACAGUGCUUGAACGGAACCGG ..(....(..(...(.(......).)..).)...).. >BT075303.1/10-45 AGGUUACCUGCUUCAACAGUGCUUGAACGGCAACCU ..(...(..(...(.(......).)..).)...).. >BC152596.1/22-57 GAGGUUCUUGCUUCAACAGUGAUUGAACGGAACUUC ...(..(..(...(.(......).)..).)..)... >BC063337.1/26-62 CGCAGUUCUUGCUUCAACAGUGCUUGAACGGAACUCG ....(..(..(...(.(......).)..).)..)... >DQ437112.1/26-59 AGUUCUUGCUUCAACAGUGAUUGAACGGAACACU .(..(..(...(.(......).)..).)..)... >AAQQ01605438.1/3746-3780 CUGCUUCUUGCUUCAACAGUGUUUGGACGGAACAG ..(...(..(...(.(......).)..).)..).. >ABDC01086142.1/996-1030 CUGUCUCCGGCUUCAACAGUGUUUGGACGGAACAG ..(..(..(....(.(.....).)...).)..).. >AAHX01094585.1/10740-10774 CUGUAUCUUGCUUCAACAGUGUUUGGACAGAACAG ..(....(.(...(.(......).)..).)..).. >AAVX01381105.1/393-360 UGUUCUCGCUUCAACAGUGCUUGAACGGAACUGG .(..(..(...(.(......).)..).)..)... >ABRN01304445.1/359-393 CUGUCUCUUGCUUCAACAGUGUUUGAACAGAACAG ..(...(..(...(.(......).)..).)..).. >AAWR02009010.1/38752-38718 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCG ..(...(..(...(.(......).)..).)..).. >ABRT010002577.1/1339-1305 CUGUCUCUUACUUCAACAGUGUUUGGAUGGAACAG ..(...(..(...(.(......).)..).)..).. >ABRQ01098844.1/1724-1759 CGGUGUCCUGCUUCAACAGUGCUUGAACGGAACCCG ...(...(.(...(.(......).)..).)..)...
4		(.CNNUG.) (.UU.().RA.) (.UY.().RA.) ((U)U)G			44	73.3
>BT075303.1/10-45 AGGUUACCUGCUUCAACAGUGCUUGAACGGCAACCU ..(...(..(...(.(......).)..).)...).. >AF266195.1/11-46 GAGAUUCUUGCUUCAACAGUGUUUGAACGGAAUUUC ...(..(..(...(.(......).)..).)..)... >AAHX01094585.1/10740-10774 CUGUAUCUUGCUUCAACAGUGUUUGGACAGAACAG ..(....(.(...(.(......).)..).)..).. >AJ276505.2/120813-120779 CUGUGUCUUGCUUCAACCGUGUUUGGACGGAACAG ..(....(.(...(.(......).)..).)..).. >BC063337.1/26-62 CGCAGUUCUUGCUUCAACAGUGCUUGAACGGAACUCG ....(..(..(...(.(......).)..).)..)... >ABRR01372656.1/429-395 CUGUCUCUUGUUUCAACAGUGUUUGGACAGAACAG ..(...(..(...(.(......).)..).)..).. >DQ437112.1/26-59 AGUUCUUGCUUCAACAGUGAUUGAACGGAACACU .(..(..(...(.(......).)..).)..)... >M55010.1/4-39 AGAGUUCUUGCUUCAACAGUGUUUGAACGGAACCCU ...(..(..(...(.(......).)..).)..)... >ABGA01194773.1/10307-10273 GGGCUUCCUGCUUCAACAGUGCUUGAACGGAACCC ..(...(..(...(.(......).)..).)..).. >AB371410.1/64-99 CGGUUUCUUGCUUCAACAGUGCUUGGACGGAAGCCG ...(..(..(...(.(......).)..).)..)... >BT047622.1/7-41 GGGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ..(..(..(...(.(......).)..).)..)... >DQ659631.1/11-46 GUUGUUCUUGCUUCAACAGUGUUUGAACGGAACUUC ...(..(..(...(.(......).)..).)..)... >ABRN01304445.1/359-393 CUGUCUCUUGCUUCAACAGUGUUUGAACAGAACAG ..(...(..(...(.(......).)..).)..).. >ABAV01011851.1/25472-25507 CCGUUUUGUGCUUCAACAGUGAUUGAACCGAAACAG ...(..(..(...(.(......).)..).)..)... >BC152596.1/22-57 GAGGUUCUUGCUUCAACAGUGAUUGAACGGAACUUC ...(..(..(...(.(......).)..).)..)... >AANU01126896.1/12416-12450 CUGUAUCUUGCUUCAACAGUGUUUGGAUGGAACAG ...(...(.(...(.(......).)..))..)... >AAYZ01376712.1/735-701 CUGUGUCUUGCUUCAACAGUGUUUGAAUGGAACAG ...(...(.(...(.(......).)..))..)... >D15071.1/10-45 CGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCCG ...(..(..(...(.(......).)..).)..)... >ABRT010002577.1/1339-1305 CUGUCUCUUACUUCAACAGUGUUUGGAUGGAACAG ..(...(..(...(.(......).)..).)..).. >BT081799.1/21-57 CCGAGUUCUUGCUUCAACAGUGAUUGAACGGAGCCGG ....(..(..(...(.(......).)..))...)... >M14211.1/193-227 GGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCC ...(..(..(...(.(......).)..))..)... >ABRQ01098844.1/1724-1759 CGGUGUCCUGCUUCAACAGUGCUUGAACGGAACCCG ...(...(.(...(.(......).)..).)..)... >AAIY01636926.1/362-328 CUGUGUCCUGCUUCAACAGUGUUUGAACGGAACAG ....(..(.(...(.(......).)..).)..).. >AAWR02009010.1/38752-38718 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCG ..(...(..(...(.(......).)..).)..).. >AAPE02030929.1/24760-24794 UGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCA ...(..(..(...(.(......).)..))..)... >ABQO010588503.1/1800-1767 GGGUUUCCUGCUUCAACAGUGCUUGAACGGACCC ..(...(..(...(.(......).)..))..).. >AAQR03095747.1/6073-6108 CAGUUUCCUGCUUCAACAGUGCUUGGACGGAAACGG ...(..(..(...(.(......).)..).)..)... >AANH01004160.1/35803-35838 GGAGUUCUUGCUUCAACAGUGUUUGAACGGAACUUU ...(..(..(...(.(......).)..).)..)... >BT073905.1/31-66 GAAGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ...(..(..(...(.(......).)..).)..)... >AANG01554495.1/4632-4598 CUGUCCCUUGCUUCAACAGUGUUUGGACAGAACAG ..(...(..(...(.(......).)..).)..).. >ABVD01450449.1/988-1023 UGGGUUCCUGCUUCAACAGUGCUUGAAUGGAACCCA ...(..(.(....(.(......).)..).)..)... >AAGU03011944.1/23235-23201 CUGUUUCUUGCUUCAACAGUGCUUGGACGGAGCAG ...(..(..(...(.(......).)..))..)... >AAPN01199084.1/201-236 CGGUUUCCCGCUUCAACAGUGCUUGGACGGAAGCCG ...(..(..(...(.(......).)..).)..)... >Y09188.1/1-35 CUGUCUCUUGCUUCAACAGUGUUUGGACGGAACAG ..(...(..(...(.(......).)..).)..).. >AB073371.1/2-37 CGGUCUCCUGCUUCAACAGUGCUUGGACGGAGCCCG ....(..(.(...(.(......).)..))..).... >AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG ...(..(..(...(.(......).)..).)..)... >AAGV020889339.1/949-914 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCCA ...(..(..(...(.(......).)..).)..)... >EF628371.1/43-77 GAGGGUCUUGCUUCAACAGUGAUUGAACGGAACUC ....(..(.(...(.(......).)..).)..).. >AALT01281908.1/825-859 CUGUCUCUUGCUUCAACAAUGUUUGGACGGAGCAG ..(...(..(...(.(......).)..))...).. >ABRP01011077.1/2966-3000 UUGUCUCUUGCUUCAACAGUGUUUGGACAGAACAG ..(...(..(...(.(......).)..).)..).. >ABQF01062964.1/539-575 CCGCGUUCUCGCUUCAACAGUGCUUGAACGGAACCGG ..(....(..(...(.(......).)..).)...).. >AF285177.1/2-35 UGUUCCUGCUUCAACAGUGCUUGGACGGAACCCG .(..(..(...(.(......).)..).)..)... >AAVX01381105.1/393-360 UGUUCUCGCUUCAACAGUGCUUGAACGGAACUGG .(..(..(...(.(......).)..).)..)... >AAQQ01605438.1/3746-3780 CUGCUUCUUGCUUCAACAGUGUUUGGACGGAACAG ..(...(..(...(.(......).)..).)..)..
5		(.CNNUG.) (.UU.().RA.) (.UY.().RA.) ((U)U)G Y(YY(G))			33	55.0
>AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG ...(..(..(...(.(......).)..).)..)... >AALT01281908.1/825-859 CUGUCUCUUGCUUCAACAAUGUUUGGACGGAGCAG ..(...(..(...(.(......).)..))...).. >AF285177.1/2-35 UGUUCCUGCUUCAACAGUGCUUGGACGGAACCCG .(..(..(...(.(......).)..).)..)... >BT047622.1/7-41 GGGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ..(..(..(...(.(......).)..).)..)... >AAVX01381105.1/393-360 UGUUCUCGCUUCAACAGUGCUUGAACGGAACUGG .(..(..(...(.(......).)..).)..)... >BC063337.1/26-62 CGCAGUUCUUGCUUCAACAGUGCUUGAACGGAACUCG ....(..(..(...(.(......).)..).)..)... >BT081799.1/21-57 CCGAGUUCUUGCUUCAACAGUGAUUGAACGGAGCCGG ....(..(..(...(.(......).)..))...)... >AB371410.1/64-99 CGGUUUCUUGCUUCAACAGUGCUUGGACGGAAGCCG ...(..(..(...(.(......).)..).)..)... >ABGA01194773.1/10307-10273 GGGCUUCCUGCUUCAACAGUGCUUGAACGGAACCC ..(...(..(...(.(......).)..).)..).. >AAWR02009010.1/38752-38718 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCG ..(...(..(...(.(......).)..).)..).. >M14211.1/193-227 GGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCC ...(..(..(...(.(......).)..))..)... >AAQQ01605438.1/3746-3780 CUGCUUCUUGCUUCAACAGUGUUUGGACGGAACAG ..(...(..(...(.(......).)..).)..).. >BC152596.1/22-57 GAGGUUCUUGCUUCAACAGUGAUUGAACGGAACUUC ...(..(..(...(.(......).)..).)..)... >AAPN01199084.1/201-236 CGGUUUCCCGCUUCAACAGUGCUUGGACGGAAGCCG ...(..(..(...(.(......).)..).)..)... >BT075303.1/10-45 AGGUUACCUGCUUCAACAGUGCUUGAACGGCAACCU ..(...(..(...(.(......).)..).)...).. >ABQF01062964.1/539-575 CCGCGUUCUCGCUUCAACAGUGCUUGAACGGAACCGG ..(....(..(...(.(......).)..).)...).. >AAQR03095747.1/6073-6108 CAGUUUCCUGCUUCAACAGUGCUUGGACGGAAACGG ...(..(..(...(.(......).)..).)..)... >AAGU03011944.1/23235-23201 CUGUUUCUUGCUUCAACAGUGCUUGGACGGAGCAG ...(..(..(...(.(......).)..))..)... >Y09188.1/1-35 CUGUCUCUUGCUUCAACAGUGUUUGGACGGAACAG ..(...(..(...(.(......).)..).)..).. >D15071.1/10-45 CGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCCG ...(..(..(...(.(......).)..).)..)... >AF266195.1/11-46 GAGAUUCUUGCUUCAACAGUGUUUGAACGGAAUUUC ...(..(..(...(.(......).)..).)..)... >ABQO010588503.1/1800-1767 GGGUUUCCUGCUUCAACAGUGCUUGAACGGACCC ..(...(..(...(.(......).)..))..).. >AANG01554495.1/4632-4598 CUGUCCCUUGCUUCAACAGUGUUUGGACAGAACAG ..(...(..(...(.(......).)..).)..).. >AANH01004160.1/35803-35838 GGAGUUCUUGCUUCAACAGUGUUUGAACGGAACUUU ...(..(..(...(.(......).)..).)..)... >ABRP01011077.1/2966-3000 UUGUCUCUUGCUUCAACAGUGUUUGGACAGAACAG ..(...(..(...(.(......).)..).)..).. >AAGV020889339.1/949-914 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCCA ...(..(..(...(.(......).)..).)..)... >M55010.1/4-39 AGAGUUCUUGCUUCAACAGUGUUUGAACGGAACCCU ...(..(..(...(.(......).)..).)..)... >DQ437112.1/26-59 AGUUCUUGCUUCAACAGUGAUUGAACGGAACACU .(..(..(...(.(......).)..).)..)... >BT073905.1/31-66 GAAGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ...(..(..(...(.(......).)..).)..)... >AAPE02030929.1/24760-24794 UGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCA ...(..(..(...(.(......).)..))..)... >ABRN01304445.1/359-393 CUGUCUCUUGCUUCAACAGUGUUUGAACAGAACAG ..(...(..(...(.(......).)..).)..).. >ABRR01372656.1/429-395 CUGUCUCUUGUUUCAACAGUGUUUGGACAGAACAG ..(...(..(...(.(......).)..).)..).. >DQ659631.1/11-46 GUUGUUCUUGCUUCAACAGUGUUUGAACGGAACUUC ...(..(..(...(.(......).)..).)..)...

>D15071.1/10-45 CGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCCG ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >AALT01281908.1/825-859 CUGUCUCUUGCUUCAACAAUGUUUGGACGGAGCAG ...............(......)............ .........(...(.(......).)..)....... ..(...(..(...(.(......).)..))...).. ..(...(..(...(.(......).)..))...).. ..(...(..(...(.(......).)..))...).. >ABGA01194773.1/10307-10273 GGGCUUCCUGCUUCAACAGUGCUUGAACGGAACCC ...............(......)............ .........(...(.(......).)..)....... ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. >AF285177.1/2-35 UGUUCCUGCUUCAACAGUGCUUGGACGGAACCCG .............(......)............. .......(...(.(......).)..)........ .(..(..(...(.(......).)..).)..)... .(..(..(...(.(......).)..).)..)... .(..(..(...(.(......).)..).)..)... >AAWR02009010.1/38752-38718 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCG ...............(......)............ .........(...(.(......).)..)....... ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. >AB371410.1/64-99 CGGUUUCUUGCUUCAACAGUGCUUGGACGGAAGCCG ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >M14211.1/193-227 GGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCC ...............(......)............ .........(...(.(......).)..)....... ...(..(..(...(.(......).)..))..)... ...(..(..(...(.(......).)..))..)... ...(..(..(...(.(......).)..))..)... >BT073905.1/31-66 GAAGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >BC152596.1/22-57 GAGGUUCUUGCUUCAACAGUGAUUGAACGGAACUUC ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >BT047622.1/7-41 GGGUUCUUGCUUCAACAGUGAUUGAACGGAACUCC ..............(......)............. ........(...(.(......).)..)........ ..(..(..(...(.(......).)..).)..)... ..(..(..(...(.(......).)..).)..)... ..(..(..(...(.(......).)..).)..)... >AANH01004160.1/35803-35838 GGAGUUCUUGCUUCAACAGUGUUUGAACGGAACUUU ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >ABRR01372656.1/429-395 CUGUCUCUUGUUUCAACAGUGUUUGGACAGAACAG ...............(......)............ .........(...(.(......).)..)....... ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. >AANG01554495.1/4632-4598 CUGUCCCUUGCUUCAACAGUGUUUGGACAGAACAG ...............(......)............ .........(...(.(......).)..)....... ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. >AAQQ01605438.1/3746-3780 CUGCUUCUUGCUUCAACAGUGUUUGGACGGAACAG ...............(......)............ .........(...(.(......).)..)....... ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. >AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >ABRP01011077.1/2966-3000 UUGUCUCUUGCUUCAACAGUGUUUGGACAGAACAG ...............(......)............ .........(...(.(......).)..)....... ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. >BC063337.1/26-62 CGCAGUUCUUGCUUCAACAGUGCUUGAACGGAACUCG ................(......)............. ..........(...(.(......).)..)........ ....(..(..(...(.(......).)..).)..)... ....(..(..(...(.(......).)..).)..)... ....(..(..(...(.(......).)..).)..)... >DQ659631.1/11-46 GUUGUUCUUGCUUCAACAGUGUUUGAACGGAACUUC ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >AAVX01381105.1/393-360 UGUUCUCGCUUCAACAGUGCUUGAACGGAACUGG .............(......)............. .......(...(.(......).)..)........ .(..(..(...(.(......).)..).)..)... .(..(..(...(.(......).)..).)..)... .(..(..(...(.(......).)..).)..)... >ABQF01062964.1/539-575 CCGCGUUCUCGCUUCAACAGUGCUUGAACGGAACCGG ................(......)............. ..........(...(.(......).)..)........ ..(....(..(...(.(......).)..).)...).. ..(....(..(...(.(......).)..).)...).. ..(....(..(...(.(......).)..).)...).. >BT081799.1/21-57 CCGAGUUCUUGCUUCAACAGUGAUUGAACGGAGCCGG ................(......)............. ..........(...(.(......).)..)........ ....(..(..(...(.(......).)..))...)... ....(..(..(...(.(......).)..))...)... ....(..(..(...(.(......).)..))...)... >AAGV020889339.1/949-914 UGGUUUCCUGCUUCAACAGUGCUUGAACGGAACCCA ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >Y09188.1/1-35 CUGUCUCUUGCUUCAACAGUGUUUGGACGGAACAG ...............(......)............ .........(...(.(......).)..)....... ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. >AAQR03095747.1/6073-6108 CAGUUUCCUGCUUCAACAGUGCUUGGACGGAAACGG ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >ABQO010588503.1/1800-1767 GGGUUUCCUGCUUCAACAGUGCUUGAACGGACCC ...............(......)........... .........(...(.(......).)..)...... ..(...(..(...(.(......).)..))..).. ..(...(..(...(.(......).)..))..).. ..(...(..(...(.(......).)..))..).. >AAPE02030929.1/24760-24794 UGGUUUCCUGCUUCAACAGUGCUUGGACGGAACCA ...............(......)............ .........(...(.(......).)..)....... ...(..(..(...(.(......).)..))..)... ...(..(..(...(.(......).)..))..)... ...(..(..(...(.(......).)..))..)... >AAGU03011944.1/23235-23201 CUGUUUCUUGCUUCAACAGUGCUUGGACGGAGCAG ...............(......)............ .........(...(.(......).)..)....... ...(..(..(...(.(......).)..))..)... ...(..(..(...(.(......).)..))..)... ...(..(..(...(.(......).)..))..)... >AF266195.1/11-46 GAGAUUCUUGCUUCAACAGUGUUUGAACGGAAUUUC ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >BT075303.1/10-45 AGGUUACCUGCUUCAACAGUGCUUGAACGGCAACCU ...............(......)............. .........(...(.(......).)..)........ ..(...(..(...(.(......).)..).)...).. ..(...(..(...(.(......).)..).)...).. ..(...(..(...(.(......).)..).)...).. >M55010.1/4-39 AGAGUUCUUGCUUCAACAGUGUUUGAACGGAACCCU ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >AAPN01199084.1/201-236 CGGUUUCCCGCUUCAACAGUGCUUGGACGGAAGCCG ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >ABRN01304445.1/359-393 CUGUCUCUUGCUUCAACAGUGUUUGAACAGAACAG ...............(......)............ .........(...(.(......).)..)....... ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. >DQ437112.1/26-59 AGUUCUUGCUUCAACAGUGAUUGAACGGAACACU .............(......)............. .......(...(.(......).)..)........ .(..(..(...(.(......).)..).)..)... .(..(..(...(.(......).)..).)..)... .(..(..(...(.(......).)..).)..)... >AB073371.1/2-37 CGGUCUCCUGCUUCAACAGUGCUUGGACGGAGCCCG ...............(......)............. .........(...(.(......).)..)........ ....(..(.(...(.(......).)..))..).... ....(..(.(...(.(......).)..))..).... >AAYZ01376712.1/735-701 CUGUGUCUUGCUUCAACAGUGUUUGAAUGGAACAG ...............(......)............ .........(...(.(......).)..)....... ...(...(.(...(.(......).)..))..)... ...(...(.(...(.(......).)..))..)... >AAIY01636926.1/362-328 CUGUGUCCUGCUUCAACAGUGUUUGAACGGAACAG ...............(......)............ .........(...(.(......).)..)....... ....(..(.(...(.(......).)..).)..).. ....(..(.(...(.(......).)..).)..).. >AJ276505.2/120813-120779 CUGUGUCUUGCUUCAACCGUGUUUGGACGGAACAG ...............(......)............ .........(...(.(......).)..)....... ..(....(.(...(.(......).)..).)..).. ..(....(.(...(.(......).)..).)..).. >ABAV01011851.1/25472-25507 CCGUUUUGUGCUUCAACAGUGAUUGAACCGAAACAG ...............(......)............. .........(...(.(......).)..)........ ...(..(..(...(.(......).)..).)..)... ...(..(..(...(.(......).)..).)..)... >EF628371.1/43-77 GAGGGUCUUGCUUCAACAGUGAUUGAACGGAACUC ...............(......)............ .........(...(.(......).)..)....... ....(..(.(...(.(......).)..).)..).. ....(..(.(...(.(......).)..).)..).. >AAHX01094585.1/10740-10774 CUGUAUCUUGCUUCAACAGUGUUUGGACAGAACAG ...............(......)............ .........(...(.(......).)..)....... ..(....(.(...(.(......).)..).)..).. ..(....(.(...(.(......).)..).)..).. >ABRT010002577.1/1339-1305 CUGUCUCUUACUUCAACAGUGUUUGGAUGGAACAG ...............(......)............ .........(...(.(......).)..)....... ..(...(..(...(.(......).)..).)..).. ..(...(..(...(.(......).)..).)..).. >AANU01126896.1/12416-12450 CUGUAUCUUGCUUCAACAGUGUUUGGAUGGAACAG ...............(......)............ .........(...(.(......).)..)....... ...(...(.(...(.(......).)..))..)... ...(...(.(...(.(......).)..))..)... >ABRQ01098844.1/1724-1759 CGGUGUCCUGCUUCAACAGUGCUUGAACGGAACCCG ...............(......)............. .........(...(.(......).)..)........ ...(...(.(...(.(......).)..).)..)... ...(...(.(...(.(......).)..).)..)... >ABVD01450449.1/988-1023 UGGGUUCCUGCUUCAACAGUGCUUGAAUGGAACCCA ...............(......)............. ........(....(.(......).)..)........ ...(..(.(....(.(......).)..).)..)... ...(..(.(....(.(......).)..).)..)... >ABDC01086142.1/996-1030 CUGUCUCCGGCUUCAACAGUGUUUGGACGGAACAG ...............(.....)............. ........(....(.(.....).)...)....... ..(..(..(....(.(.....).)...).)..).. >AY032659.1/108-140 UCGCCUUCUGCACCAGUGUGUGUAAAGGCCUGA ............(......)............. ....(....(..(......)..)...)...... >BAAE01241509.1/2881-2846 GAAGUUCUUGCUUCAACAGUGUUUGAACGGAACUUC ...............(.....).............. ........(....(.(.....).)..)......... >ABRO01415732.1/1669-1703 CUGUGUCUUGCUUCAACAGUGUUUGGACAGCACAC ...............(......)............ .........(...(.(......).)..)....... >AAFR03019774.1/239510-239545 GAGGUUCUUGCUUCAGCAGUGUUUGGACGGAACCUC ...............(.....).............. .........(...(.(.....).)...)........ >AANN01127411.1/370-404 CUGUUUCUUGCUUCAACAGUGUUUGGACGGAACAG ...............(.....)............. .........(...(.(.....).)...)....... >AAHY01029141.1/15302-15336 CUGUGUCUUGCUUCAACAGUGUUUGGACGAAACAG ...............(.....)............. .........(...(.(.....).)...)....... >AAGE02004546.1/6487-6454 AGGUGUUUUGCUUCAACAUUGUUUGAACGACCGU ...............(......)........... .........(...(.(......).)..)...... >AF068225.2/1-36 CGGUGUUUUGCUUCAACAGUGUUUGAACGAGCAUCG ...............(......)............. .........(...(.(......).)..)........ >AY550979.1/1-34 UGGUUUUGCUUCAACAGUGAUUGAACGAGCAUCG .............(......)............. .......(...(.(......).)..)........ >AY260753.1/1-34 GUUACCUGCUUCAACAGUGCUUGAACGGCAACCU .............(......)............. .......(...(.(......).)..)........ >AY277900.1/12-47 CGAUGUUAUGCUUCAACAGUGAUUGAACGAGCAUCG ...............(......)............. .........(...(.(......).)..)........ >AL592437.7/34848-34882 CUGUUCCUUGCUUCAACAGUGUUUGGAUGGAACAG ...............(.....)............. ......(......(.(.....).)....)...... >AAGW02057904.1/76866-76900 CUGUGUCUUGCCUCAACAGUGUUUGAACGGAACAG ...............(......)............ ......(......(.(......).)...)...... >BX934496.1/23-58 CGGGUUCCUGCGUCAACAGUGCUUGGACGGAACCGG ...............(......)............. >AAPY01271888.1/1826-1792 CGGUUUCCUGCAUCAACAGUGCUUGAACGGAACCG ...............(......)............

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	(.CNNUG.)			< 0.001		61.7

AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG .........1.........2.........3...... 123456789012345678901234567890123456
2	(.UU.().RA.)			< 0.001		31.6

AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG .........1.........2.........3...... 123456789012345678901234567890123456
3	(.UY.().RA.)			< 0.001		18.5

AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG .........1.........2.........3...... 123456789012345678901234567890123456
4	((U)U)G			< 0.001		10.1

AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG .........1.........2.........3...... 123456789012345678901234567890123456
5	Y(YY(G))			< 0.001		5.93

AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG .........1.........2.........3...... 123456789012345678901234567890123456
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	(.CNNUG.)			< 0.001		61.7

AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG .........1.........2.........3...... 123456789012345678901234567890123456
2	(.GNNUG.)			< 0.001		12.4

AAWZ02023447.1/15493-15528 UGGGUUCUUGCUUCAACAGUGUUUGAACGGGACCCG .........1.........2.........3...... 123456789012345678901234567890123456
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).