D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

HOX antisense intergenic RNA myeloid 1 conserved region 3   (Rfam: RF01977)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
G(GU(C))
((G)AA)A
(RAYC)
(.UYNYC.)
(Y()AC)
C(U(G))
((R)C)U
((A)AY)R
90.9
100.0
81.8
90.9
90.9
100.0
100.0
100.0
G(GU(C))
((G)AA)A
(RAYC)
(.UYNYC.)
(Y()AC)
C(U(G))
((R)C)U
((A)AY)R

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.9 %
(± 0.0598 %)
Decision tree:

5-fold cross-validation: 71.2 %
(± 19.3 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 96.6 %
(± 6.66 %)
of CAAA01010317.1/3510-3452
CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
(..(.(.......))..)((..(..((.(.((....((....))))..).))..)..))
.........1.........2.........3.........4.........5.........
12345678901234567890123456789012345678901234567890123456789

abstract shape: ()()

Number of sequences
Structure ORBs (out of 11) (%)
1 G(GU(C))
 9 81.8
>CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
(..(..........)..).........................................
>ABRT010305838.1/514-572
GGUCUGCUUUGCCUGAGUCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGA
(..(..........))...........................................
>AAIY01403574.1/1325-1380
GGUCUGUUUGCCUGGACCCAUCAACAGCUGAGAGACUAAUCAACCACUGAAACUGU
(..(................))..................................
>AAGW02035950.1/10461-10403
GGUCUGUGUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAGCCACGCUGAAAAUGU
(..(..........)..).........................................
>ABRO01036369.1/3649-3703
GGUCUGUUUUGCCUGAACCUAUCAGCUGGGAGAUUAAUCGACCACACUGAAAUAU
(..(..........)..).....................................
>AC004079.1/82173-82231
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGU
(..(..........)..).........................................
>ABRR01276308.1/2083-2140
GGUCUGUUUGCCUGGACCCAUCAACAGCUGGGAGACUAAUCAACCACACUGAAAAUGU
(..(..........)..)........................................
>AAPY01076957.1/2330-2388
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAUAUUGAUCAACCACAUGGAAAAUGC
(..(..........)..).........................................
>AALT01437814.1/1047-990
GGUCUGUUUGCCUGGACCCAUCAGCAGCUGGGAGACUAAUGGACCACGGUGGAAAUGU
(..(.....................................)..).............
2 G(GU(C))
((G)AA)A
 8 72.7
>AC004079.1/82173-82231
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGU
(..(..........)..)....(..(.........................)..)....
>ABRO01036369.1/3649-3703
GGUCUGUUUUGCCUGAACCUAUCAGCUGGGAGAUUAAUCGACCACACUGAAAUAU
(..(..........)..)...((.........................)..)...
>ABRR01276308.1/2083-2140
GGUCUGUUUGCCUGGACCCAUCAACAGCUGGGAGACUAAUCAACCACACUGAAAAUGU
(..(..........)..)....(.(.........................)..)....
>AAPY01076957.1/2330-2388
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAUAUUGAUCAACCACAUGGAAAAUGC
(..(..........)..)....(.(..........................)..)....
>AAIY01403574.1/1325-1380
GGUCUGUUUGCCUGGACCCAUCAACAGCUGAGAGACUAAUCAACCACUGAAACUGU
(..(................)).((.......................)..)....
>AAGW02035950.1/10461-10403
GGUCUGUGUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAGCCACGCUGAAAAUGU
(..(..........)..)....(..(.........................)..)....
>ABRT010305838.1/514-572
GGUCUGCUUUGCCUGAGUCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGA
(..(..........)).....(...(.........................)..)....
>CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
(..(..........)..)....(..(.........................)..)....
3 G(GU(C))
((G)AA)A
(RAYC)
 6 54.5
>ABRO01036369.1/3649-3703
GGUCUGUUUUGCCUGAACCUAUCAGCUGGGAGAUUAAUCGACCACACUGAAAUAU
(..(..........)..)...((...........(....)........)..)...
>ABRT010305838.1/514-572
GGUCUGCUUUGCCUGAGUCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGA
(..(..........)).....(...(...........(....)........)..)....
>AAGW02035950.1/10461-10403
GGUCUGUGUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAGCCACGCUGAAAAUGU
(..(..........)..)....(..(...........(....)........)..)....
>ABRR01276308.1/2083-2140
GGUCUGUUUGCCUGGACCCAUCAACAGCUGGGAGACUAAUCAACCACACUGAAAAUGU
(..(..........)..)....(.(...........(....)........)..)....
>AC004079.1/82173-82231
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGU
(..(..........)..)....(..(...........(....)........)..)....
>CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
(..(..........)..)....(..(...........(....)........)..)....
4 G(GU(C))
((G)AA)A
(RAYC)
(.UYNYC.)
 6 54.5
>AC004079.1/82173-82231
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGU
(..(.(.......))..)....(..(...........(....)........)..)....
>AAGW02035950.1/10461-10403
GGUCUGUGUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAGCCACGCUGAAAAUGU
(..(.(.......))..)....(..(...........(....)........)..)....
>ABRO01036369.1/3649-3703
GGUCUGUUUUGCCUGAACCUAUCAGCUGGGAGAUUAAUCGACCACACUGAAAUAU
(..(.(.......))..)...((...........(....)........)..)...
>CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
(..(.(.......))..)....(..(...........(....)........)..)....
>ABRR01276308.1/2083-2140
GGUCUGUUUGCCUGGACCCAUCAACAGCUGGGAGACUAAUCAACCACACUGAAAAUGU
(..(.(.......))..)....(.(...........(....)........)..)....
>ABRT010305838.1/514-572
GGUCUGCUUUGCCUGAGUCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGA
(..(.(.......))).....(...(...........(....)........)..)....
5 G(GU(C))
((G)AA)A
(RAYC)
(.UYNYC.)
(Y()AC)
 6 54.5
>AC004079.1/82173-82231
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGU
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
>ABRT010305838.1/514-572
GGUCUGCUUUGCCUGAGUCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGA
(..(.(.......))).....(...(..(.(......(....)..)..)..)..)....
>CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
>ABRO01036369.1/3649-3703
GGUCUGUUUUGCCUGAACCUAUCAGCUGGGAGAUUAAUCGACCACACUGAAAUAU
(..(.(.......))..)...((..(.(......(....)..)..)..)..)...
>AAGW02035950.1/10461-10403
GGUCUGUGUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAGCCACGCUGAAAAUGU
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
>ABRR01276308.1/2083-2140
GGUCUGUUUGCCUGGACCCAUCAACAGCUGGGAGACUAAUCAACCACACUGAAAAUGU
(..(.(.......))..)....(.(..(.(......(....)..)..)..)..)....
6 G(GU(C))
((G)AA)A
(RAYC)
(.UYNYC.)
(Y()AC)
C(U(G))
 6 54.5
>AC004079.1/82173-82231
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGU
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
>ABRR01276308.1/2083-2140
GGUCUGUUUGCCUGGACCCAUCAACAGCUGGGAGACUAAUCAACCACACUGAAAAUGU
(..(.(.......))..)....(.(..(.(......(....)..)..)..)..)....
>AAGW02035950.1/10461-10403
GGUCUGUGUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAGCCACGCUGAAAAUGU
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
>ABRO01036369.1/3649-3703
GGUCUGUUUUGCCUGAACCUAUCAGCUGGGAGAUUAAUCGACCACACUGAAAUAU
(..(.(.......))..)...((..(.(......(....)..)..)..)..)...
>CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
>ABRT010305838.1/514-572
GGUCUGCUUUGCCUGAGUCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGA
(..(.(.......))).....(...(..(.(......(....)..)..)..)..)....
7 G(GU(C))
((G)AA)A
(RAYC)
(.UYNYC.)
(Y()AC)
C(U(G))
((R)C)U
 6 54.5
>CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
(..(.(.......))..)....(..((.(.(......(....)..)..).))..)....
>ABRR01276308.1/2083-2140
GGUCUGUUUGCCUGGACCCAUCAACAGCUGGGAGACUAAUCAACCACACUGAAAAUGU
(..(.(.......))..)....(.((.(.(......(....)..)..).))..)....
>AC004079.1/82173-82231
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGU
(..(.(.......))..)....(..((.(.(......(....)..)..).))..)....
>AAGW02035950.1/10461-10403
GGUCUGUGUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAGCCACGCUGAAAAUGU
(..(.(.......))..)....(..((.(.(......(....)..)..).))..)....
>ABRO01036369.1/3649-3703
GGUCUGUUUUGCCUGAACCUAUCAGCUGGGAGAUUAAUCGACCACACUGAAAUAU
(..(.(.......))..)...(((.(.(......(....)..)..).))..)...
>ABRT010305838.1/514-572
GGUCUGCUUUGCCUGAGUCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGA
(..(.(.......))).....(...((.(.(......(....)..)..).))..)....
8 G(GU(C))
((G)AA)A
(RAYC)
(.UYNYC.)
(Y()AC)
C(U(G))
((R)C)U
((A)AY)R
 4 36.4
>CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
(..(.(.......))..).(..(..((.(.(......(....)..)..).))..)..).
>ABRT010305838.1/514-572
GGUCUGCUUUGCCUGAGUCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGA
(..(.(.......)))....((...((.(.(......(....)..)..).))..)..).
>AC004079.1/82173-82231
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGU
(..(.(.......))..).(..(..((.(.(......(....)..)..).))..)..).
>AAGW02035950.1/10461-10403
GGUCUGUGUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAGCCACGCUGAAAAUGU
(..(.(.......))..).(..(..((.(.(......(....)..)..).))..)..).

>CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
(..(..........)..).........................................
(..(..........)..)....(..(.........................)..)....
(..(..........)..)....(..(...........(....)........)..)....
(..(.(.......))..)....(..(...........(....)........)..)....
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
(..(.(.......))..)....(..((.(.(......(....)..)..).))..)....
(..(.(.......))..).(..(..((.(.(......(....)..)..).))..)..).
>ABRT010305838.1/514-572
GGUCUGCUUUGCCUGAGUCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGA
(..(..........))...........................................
(..(..........)).....(...(.........................)..)....
(..(..........)).....(...(...........(....)........)..)....
(..(.(.......))).....(...(...........(....)........)..)....
(..(.(.......))).....(...(..(.(......(....)..)..)..)..)....
(..(.(.......))).....(...(..(.(......(....)..)..)..)..)....
(..(.(.......))).....(...((.(.(......(....)..)..).))..)....
(..(.(.......)))....((...((.(.(......(....)..)..).))..)..).
>AAGW02035950.1/10461-10403
GGUCUGUGUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAGCCACGCUGAAAAUGU
(..(..........)..).........................................
(..(..........)..)....(..(.........................)..)....
(..(..........)..)....(..(...........(....)........)..)....
(..(.(.......))..)....(..(...........(....)........)..)....
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
(..(.(.......))..)....(..((.(.(......(....)..)..).))..)....
(..(.(.......))..).(..(..((.(.(......(....)..)..).))..)..).
>AC004079.1/82173-82231
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGU
(..(..........)..).........................................
(..(..........)..)....(..(.........................)..)....
(..(..........)..)....(..(...........(....)........)..)....
(..(.(.......))..)....(..(...........(....)........)..)....
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
(..(.(.......))..)....(..(..(.(......(....)..)..)..)..)....
(..(.(.......))..)....(..((.(.(......(....)..)..).))..)....
(..(.(.......))..).(..(..((.(.(......(....)..)..).))..)..).
>ABRO01036369.1/3649-3703
GGUCUGUUUUGCCUGAACCUAUCAGCUGGGAGAUUAAUCGACCACACUGAAAUAU
(..(..........)..).....................................
(..(..........)..)...((.........................)..)...
(..(..........)..)...((...........(....)........)..)...
(..(.(.......))..)...((...........(....)........)..)...
(..(.(.......))..)...((..(.(......(....)..)..)..)..)...
(..(.(.......))..)...((..(.(......(....)..)..)..)..)...
(..(.(.......))..)...(((.(.(......(....)..)..).))..)...
>ABRR01276308.1/2083-2140
GGUCUGUUUGCCUGGACCCAUCAACAGCUGGGAGACUAAUCAACCACACUGAAAAUGU
(..(..........)..)........................................
(..(..........)..)....(.(.........................)..)....
(..(..........)..)....(.(...........(....)........)..)....
(..(.(.......))..)....(.(...........(....)........)..)....
(..(.(.......))..)....(.(..(.(......(....)..)..)..)..)....
(..(.(.......))..)....(.(..(.(......(....)..)..)..)..)....
(..(.(.......))..)....(.((.(.(......(....)..)..).))..)....
>AAIY01403574.1/1325-1380
GGUCUGUUUGCCUGGACCCAUCAACAGCUGAGAGACUAAUCAACCACUGAAACUGU
(..(................))..................................
(..(................)).((.......................)..)....
>AAPY01076957.1/2330-2388
GGUCUGUUUUGCCUGAACCCAUCAACAGCUGGGAUAUUGAUCAACCACAUGGAAAAUGC
(..(..........)..).........................................
(..(..........)..)....(.(..........................)..)....
>AALT01437814.1/1047-990
GGUCUGUUUGCCUGGACCCAUCAGCAGCUGGGAGACUAAUGGACCACGGUGGAAAUGU
(..(.....................................)..).............

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 G(GU(C)) < 0.001 107
CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
.........1.........2.........3.........4.........5.........
12345678901234567890123456789012345678901234567890123456789
2 (RAYC) < 0.001 13.7
CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
.........1.........2.........3.........4.........5.........
12345678901234567890123456789012345678901234567890123456789
3 (.UYNYC.) < 0.001 9.23
CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
.........1.........2.........3.........4.........5.........
12345678901234567890123456789012345678901234567890123456789
4 ((G)AA)A < 0.001 8.24
CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
.........1.........2.........3.........4.........5.........
12345678901234567890123456789012345678901234567890123456789
5 (Y()AC) < 0.001 15.5
CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
.........1.........2.........3.........4.........5.........
12345678901234567890123456789012345678901234567890123456789
6 C(U(G)) < 0.001 4.33
CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
.........1.........2.........3.........4.........5.........
12345678901234567890123456789012345678901234567890123456789
7 ((A)AY)R < 0.001 4.44
CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
.........1.........2.........3.........4.........5.........
12345678901234567890123456789012345678901234567890123456789
8 ((R)C)U 0.00113 1.18
CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
.........1.........2.........3.........4.........5.........
12345678901234567890123456789012345678901234567890123456789
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 G(GU(C)) < 0.001 107
CAAA01010317.1/3510-3452
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
GGUCUGUUUUUCCUGAACCCAUCCACAGCUGGGAGAUUAAUCAACCACACUGAAAAUGG
.........1.........2.........3.........4.........5.........
12345678901234567890123456789012345678901234567890123456789
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).