D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

mir-124 microRNA precursor family (Rfam: RF00239)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

(.YY.().CR.)
(.NN.().CR.)
((C)G)G
U(NU(R))

98.0
100.0
98.0
98.0

(.YY.().CR.)
(.YY.().CR.)
((C)G)G

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 99 %
(± 0.141 %)

Decision tree:

5-fold cross-validation: 89.1 %
(± 8.16 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 92.7 %
(± 3.6 %)

of AADN03002517.1/215257-215336

AADN03002517.1/215257-215336

CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC
((((((.(((..((((((((.(((..(((((((..(((...)))..)))))))..))).))))))))..)))))))))..
.........1.........2.........3.........4.........5.........6.........7.........8
12345678901234567890123456789012345678901234567890123456789012345678901234567890

abstract shape: `()`

					Number of sequences
	Structure	ORBs			(out of 50)	(%)
1		(.YY.().CR.)			45	90.0
>AANH01005533.1/39962-40041 CUUCCUCUCUCAGUGUUCACAGUGGACCUUGAUUUAAAAUCAUUCAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCC .......(....(.....................................................)..).......... >BX511178.6/169755-169675 UGCUUUUCUUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAUGGC ........(..(.......................................................)....)........ >AANH01002585.1/13981-13901 UUGCCACUCCUCGUGUUCACGGCGGACCUUGAUUUAUUAGCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAAUC .........(..(......................................................)..).......... >AAVX01233922.1/370-449 CCCCCACUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGGGCC .........(..(.....................................................)..).......... >AAVX01582238.1/229-149 CUCCUGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGUGCC .........(..(.....................................................)...).......... >BAAE01194669.1/2121-2201 UUUCCACUCCUCGUGUUCACAGCGGACUUUAAUUGAUUAAGCGCACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAAUC .........(..(......................................................)..).......... >AAJJ01000069.1/11639-11717 GUCAUUCUCCUAGUGUUCACUGUUGGCCUGUAUGUUUUUGUAACGCAUAAGGCACGCGGUGAAUGCCAAGAGCAGACUU ........(...(....................................................)...)......... >BX248497.11/64645-64566 CUCUCGCUGUACGUGUUCACAGUGGACCUUGAUUUAUUGUAUUUCAAUUAAGGCACGCGGUGAAUGCCAACAGCACAGCC ..(...(.................................................................)..).... >AACT01007791.1/10034-10112 CCAAGUUCGAUCGUGUUUAUUGUGGACCUUGCCGUGUGACGUCACAGUAAGGCACGCGGUGAAUGCCAACGAACUCGCG .........(..(....................................................)..).......... >AADK01010415.1/6990-7072 GUCCACCUCCUCGCGUUCACUGCCGGAGCCGUUAUGUAUAUUUAAAAUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACUC .........(..(........................................................)..).......... >AANH01005777.1/13142-13063 UUGUGUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCUUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAUUACCC .........(..(.....................................................)..).......... >BAAF04105842.1/7834-7753 UUUUCUCUCCUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGCGACC .........(..(.......................................................)..).......... >AC021518.12/83108-83029 GCUCUGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(.....................................................)..).......... >AAZO01006175.1/169136-169059 UGCCUGCUCCUCGUGUUCACUGUUGGCCUUGAUGUUUUAAUGAUCAUAAGGCACGCGGUGAAUGCCAAGAGCUAGCUC .........(..(...................................................)..).......... >BX323067.11/106925-107004 CUCUGGCUUUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCUUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(.....................................................)..).......... >AACT01004897.1/11101-11179 UGCGCUUCAUCCGCGUUUGCUGCGGACCUUCUUGUGUGACAUCACAAUAAGGCACGCGGUGAAUGCCAAUGAAACGUCA .........(..(....................................................)..).......... >AAWU01000987.1/43993-44075 GUUUUUCUCCUGGUGUUCACUGCCGGCCUGUAUGUCCUAUUGAGGUUUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACGA ..(...(....................................................................)..).... >CR381647.10/84956-85035 UCUCGCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGAAUC ......(....(......................................................)..).......... >AAAB01008984.1/10212826-10212908 GUUUUUCUCCUGGUGUUCACUGUAGGCCUGUAUGUUCUAUUGCGGAUUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGA ...(..(....................................................................)..).... >AABS01000310.1/18792-18714 CGCUUAUGAGUCGUGUUUACUGUGGACCUUGCUGUGUGACGUCACAAUAAGGCACGCGGUGAAUGCCAAUCAAAAGUCG .........(..(....................................................)..).......... >AAQQ01613377.1/480-556 AGGCCCCUCUGCGUGUCCACAGCGGACCUGAUUUUAUGUCUAUACAUUUAGGCACGCGGUGAUGCAAGAGAGCGCUC ..(...(................................................................)..).. >CAAB02009061.1/535-451 UAAACUUUCCACGAAUUCGAUCACGGCGGACCUUAAUUUAUCUGCCCAUCAAUUCAGGCACGCGGAGAAUGCCAAGAGAGGAAUC ..............(..(....................................................)...).......... >AACN010875145.1/527-607 ACUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAUUAGCGGAGCC .........(..(.....................................................)..)........... >AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........(..(.....................................................)..).......... >CAAB02005961.1/37252-37171 UGGUCUCUCCUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGCAGCU .........(..(.......................................................)..).......... >AL096828.29/88058-88137 GGCCCCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGCGCC .(..(.....................................................................)...). >FP017274.3/18078-18158 UUUUUGCUCUUUGUGUUCACAGUGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCC .........(..(......................................................)..).......... >AC055869.13/127592-127511 GCCUCUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAAUGGGGCU .........(...(.....................................................)...).......... >AANI01016269.1/7414-7490 GUUUUUCUCCUGGUAUCCACUGUAGGCCUCUAUGAAUUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGA ....(..(............................................................)...).... >AAQB01006734.1/278415-278339 GUUUUUCUCCUGGUAUCCACUGCAGGCCUAUAUGUUAUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGA ..(....(............................................................)...).... >AEVX01011340.1/56538-56623 UCUGUGCUCCUUGCGUUCACUGCGGGCUUCCAUGUGCCAACUUUUCAAAAUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACCA .......(....(...........................................................)..).......... >AAGJ04089024.1/54216-54298 AUCCCGUUCUUAGUGUUCACUGUGAUCCUUGAUUUAUAUUCUAAAACAAUUAAGGCACGCGGUGAAUGCCAAGGCUCGAGGGU .....(..(...............................................................).....).... >AAWZ02008050.1/15223-15144 CGCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGGGCU .........(..(.....................................................)..).......... >AY866113.1/459-538 GCUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(.....................................................)..).......... >AADN03008224.1/1979-2058 CCCCAGCGUUUUGUGUUCACUGCAGACCUUGAUUUAAUGUCACACGAUUAAGGCACGCAGUGAAUGCCAAAGUUUGGGGC .........(..(.....................................................)..).......... >AASU01002643.1/1016-1092 GUUUUUCUCCUGGUAUCCACUGUAGGCCUAUAUGUAUUUCCACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGC ....(..(............................................................)...).... >AAVX01073976.1/511-432 CUCGUUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCGGGCC .........(..(.....................................................)..).......... >AAWZ02006431.1/94608-94528 GCCCUUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGCGGCU .(...(....................................................................)...).. >AAGE02000531.1/21424-21342 GUUUUUCUCCUGGUAUCCACUGCCGGCCUAUAUGUCCUAUUUCGGUACUCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGC ....(..(..................................................................)...).... >AAWZ02034331.1/1530-1450 GCUUGGCCCUUCGUGUUCACAGUGGACCUUGAUUUCAUGUGGACACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCCAGCC .........(..(......................................................)..).......... >AAPN01339562.1/220-301 GCCUGUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUUUGUACACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCCAGCC .........(...(.....................................................)...).......... >AADN03007879.1/154-234 GCCUCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAGCC .......(....(......................................................)..).......... >AC189672.3/51235-51156 UCGACACGCUUCGUGUUCACUGUCUGUCUUGAUCUUUUAUUCGAGAAUUAAGGCACGCGGUGAAUGCCAAGCGUGGGACG .........(..(.....................................................)..).......... >AAWZ02009650.1/4800-4719 GCCCCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCUAAGAACGAGGCU ...(...(.................................................................)...).... >BAAF04094312.1/9605-9526 UUUCCUCUCUCAGUGUUCACAGUGGACCUUGAUUUCAAAACAGUCAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAUCC .......(....(.....................................................)..)..........
2		(.YY.().CR.) (.NN.().CR.)			40	80.0
>AANH01005777.1/13142-13063 UUGUGUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCUUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAUUACCC .........(..(..........(..(.........................)..)..........)..).......... >BX323067.11/106925-107004 CUCUGGCUUUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCUUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(..........(..(.........................)..)..........)..).......... >AAWZ02034331.1/1530-1450 GCUUGGCCCUUCGUGUUCACAGUGGACCUUGAUUUCAUGUGGACACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCCAGCC .........(..(..........(..(..........................)..)..........)..).......... >FP017274.3/18078-18158 UUUUUGCUCUUUGUGUUCACAGUGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCC .........(..(..........(..(..........................)..)..........)..).......... >AAQQ01613377.1/480-556 AGGCCCCUCUGCGUGUCCACAGCGGACCUGAUUUUAUGUCUAUACAUUUAGGCACGCGGUGAUGCAAGAGAGCGCUC ..(...(................(..(........................)..)................)..).. >AEVX01011340.1/56538-56623 UCUGUGCUCCUUGCGUUCACUGCGGGCUUCCAUGUGCCAACUUUUCAAAAUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACCA .......(....(..........(.....(............................)..)..........)..).......... >AABS01000310.1/18792-18714 CGCUUAUGAGUCGUGUUUACUGUGGACCUUGCUGUGUGACGUCACAAUAAGGCACGCGGUGAAUGCCAAUCAAAAGUCG .........(..(..........(..(........................)..)..........)..).......... >AANH01005533.1/39962-40041 CUUCCUCUCUCAGUGUUCACAGUGGACCUUGAUUUAAAAUCAUUCAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCC .......(....(..........(..(.........................)..)..........)..).......... >AACT01004897.1/11101-11179 UGCGCUUCAUCCGCGUUUGCUGCGGACCUUCUUGUGUGACAUCACAAUAAGGCACGCGGUGAAUGCCAAUGAAACGUCA .........(..(..........(..(........................)..)..........)..).......... >AC021518.12/83108-83029 GCUCUGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(..........(..(.........................)..)..........)..).......... >AAWZ02008050.1/15223-15144 CGCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGGGCU .........(..(..........(..(.........................)..)..........)..).......... >CAAB02005961.1/37252-37171 UGGUCUCUCCUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGCAGCU .........(..(..........(..(...........................)..)..........)..).......... >AAGJ04089024.1/54216-54298 AUCCCGUUCUUAGUGUUCACUGUGAUCCUUGAUUUAUAUUCUAAAACAAUUAAGGCACGCGGUGAAUGCCAAGGCUCGAGGGU .....(..(..............(..(...........................)..)..............).....).... >AY866113.1/459-538 GCUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(..........(..(.........................)..)..........)..).......... >AAVX01073976.1/511-432 CUCGUUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCGGGCC .........(..(..........(..(.........................)..)..........)..).......... >AADN03008224.1/1979-2058 CCCCAGCGUUUUGUGUUCACUGCAGACCUUGAUUUAAUGUCACACGAUUAAGGCACGCAGUGAAUGCCAAAGUUUGGGGC .........(..(..........(..(.........................)..)..........)..).......... >AACT01007791.1/10034-10112 CCAAGUUCGAUCGUGUUUAUUGUGGACCUUGCCGUGUGACGUCACAGUAAGGCACGCGGUGAAUGCCAACGAACUCGCG .........(..(..........(..(........................)..)..........)..).......... >AC055869.13/127592-127511 GCCUCUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAAUGGGGCU .........(..(..........(...(..........................)..)..........)..).......... >AANI01016269.1/7414-7490 GUUUUUCUCCUGGUAUCCACUGUAGGCCUCUAUGAAUUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGA ...(..(.............(...(..........................)...).............)..).... >AAQB01006734.1/278415-278339 GUUUUUCUCCUGGUAUCCACUGCAGGCCUAUAUGUUAUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGA ...(..(..............(..(..........................)..)..............)..).... >AAZO01006175.1/169136-169059 UGCCUGCUCCUCGUGUUCACUGUUGGCCUUGAUGUUUUAAUGAUCAUAAGGCACGCGGUGAAUGCCAAGAGCUAGCUC .........(..(........(..(..........................)...)........)..).......... >AL096828.29/88058-88137 GGCCCCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGCGCC .(..(................(...(..........................)...).................)...). >AANH01002585.1/13981-13901 UUGCCACUCCUCGUGUUCACGGCGGACCUUGAUUUAUUAGCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAAUC .........(..(..........(..(..........................)..)..........)..).......... >AAVX01582238.1/229-149 CUCCUGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGUGCC .........(..(..........(..(..........................)..)..........)..).......... >BX511178.6/169755-169675 UGCUUUUCUUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAUGGC ........(..(..........(..(...........................)..)..........)....)........ >AAWZ02006431.1/94608-94528 GCCCUUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGCGGCU .(...(...............(..(.............................)...)...............)...).. >AACN010875145.1/527-607 ACUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAUUAGCGGAGCC .........(..(..........(..(.........................)..)..........)..)........... >CAAB02009061.1/535-451 UAAACUUUCCACGAAUUCGAUCACGGCGGACCUUAAUUUAUCUGCCCAUCAAUUCAGGCACGCGGAGAAUGCCAAGAGAGGAAUC ..............(..(.........(..(..........................)..).........)...).......... >AAVX01233922.1/370-449 CCCCCACUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGGGCC .........(..(..........(..(.........................)..)..........)..).......... >AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........(..(..........(..(.........................)..)..........)..).......... >BAAF04094312.1/9605-9526 UUUCCUCUCUCAGUGUUCACAGUGGACCUUGAUUUCAAAACAGUCAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAUCC .......(....(..........(..(.........................)..)..........)..).......... >AAJJ01000069.1/11639-11717 GUCAUUCUCCUAGUGUUCACUGUUGGCCUGUAUGUUUUUGUAACGCAUAAGGCACGCGGUGAAUGCCAAGAGCAGACUU ..(...(.............(...(............................)...).............)..).... >AC189672.3/51235-51156 UCGACACGCUUCGUGUUCACUGUCUGUCUUGAUCUUUUAUUCGAGAAUUAAGGCACGCGGUGAAUGCCAAGCGUGGGACG .........(..(........(..(.............................)..)........)..).......... >BX248497.11/64645-64566 CUCUCGCUGUACGUGUUCACAGUGGACCUUGAUUUAUUGUAUUUCAAUUAAGGCACGCGGUGAAUGCCAACAGCACAGCC ..(...(..............(..(............................)...)..............)..).... >CR381647.10/84956-85035 UCUCGCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGAAUC ......(..(...........(...(..........................)...).........)..).......... >AAPN01339562.1/220-301 GCCUGUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUUUGUACACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCCAGCC .........(..(..........(..(...........................)..)..........)..).......... >AADN03007879.1/154-234 GCCUCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAGCC .......(..(...........(...(..........................)...).........)..).......... >AAWZ02009650.1/4800-4719 GCCCCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCUAAGAACGAGGCU ...(...(...............(...(..........................)..)...............)...).... >AADK01010415.1/6990-7072 GUCCACCUCCUCGCGUUCACUGCCGGAGCCGUUAUGUAUAUUUAAAAUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACUC .........(..(...........(...(..........................)..)..........)..).......... >BAAE01194669.1/2121-2201 UUUCCACUCCUCGUGUUCACAGCGGACUUUAAUUGAUUAAGCGCACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAAUC .........(..(..........(..(..........................)..)..........)..)..........
3		(.YY.().CR.) (.NN.().CR.) ((C)G)G			29	58.0
>AAGJ04089024.1/54216-54298 AUCCCGUUCUUAGUGUUCACUGUGAUCCUUGAUUUAUAUUCUAAAACAAUUAAGGCACGCGGUGAAUGCCAAGGCUCGAGGGU .....(..(..........(.(.(..(...........................)..).).)..........).....).... >AAWZ02008050.1/15223-15144 CGCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGGGCU .........(..(......(.(.(..(.........................)..).).)......)..).......... >AACT01004897.1/11101-11179 UGCGCUUCAUCCGCGUUUGCUGCGGACCUUCUUGUGUGACAUCACAAUAAGGCACGCGGUGAAUGCCAAUGAAACGUCA .........(..(......(.(.(..(........................)..).).)......)..).......... >BX511178.6/169755-169675 UGCUUUUCUUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAUGGC ........(..(......(.(.(..(...........................)..).).)......)....)........ >AANH01005777.1/13142-13063 UUGUGUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCUUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAUUACCC .........(..(......(.(.(..(.........................)..).).)......)..).......... >AACN010875145.1/527-607 ACUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAUUAGCGGAGCC .........(..(......(.(.(..(.........................)..).).)......)..)........... >BAAF04094312.1/9605-9526 UUUCCUCUCUCAGUGUUCACAGUGGACCUUGAUUUCAAAACAGUCAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAUCC .......(....(......(.(.(..(.........................)..).).)......)..).......... >AANH01005533.1/39962-40041 CUUCCUCUCUCAGUGUUCACAGUGGACCUUGAUUUAAAAUCAUUCAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCC .......(....(......(.(.(..(.........................)..).).)......)..).......... >AANH01002585.1/13981-13901 UUGCCACUCCUCGUGUUCACGGCGGACCUUGAUUUAUUAGCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAAUC .........(..(......(.(.(..(..........................)..).).)......)..).......... >AADK01010415.1/6990-7072 GUCCACCUCCUCGCGUUCACUGCCGGAGCCGUUAUGUAUAUUUAAAAUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACUC .........(..(......(.(..(...(..........................)..).).)......)..).......... >CAAB02005961.1/37252-37171 UGGUCUCUCCUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGCAGCU .........(..(......(.(.(..(...........................)..).).)......)..).......... >AAWZ02009650.1/4800-4719 GCCCCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCUAAGAACGAGGCU ...(...(...........(.(.(...(..........................)..).).)...........)...).... >AC055869.13/127592-127511 GCCUCUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAAUGGGGCU .........(..(......(.(.(...(..........................)..).).)......)..).......... >AAPN01339562.1/220-301 GCCUGUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUUUGUACACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCCAGCC .........(..(......(.(.(..(...........................)..).).)......)..).......... >BAAE01194669.1/2121-2201 UUUCCACUCCUCGUGUUCACAGCGGACUUUAAUUGAUUAAGCGCACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAAUC .........(..(......(.(.(..(..........................)..).).)......)..).......... >AACT01007791.1/10034-10112 CCAAGUUCGAUCGUGUUUAUUGUGGACCUUGCCGUGUGACGUCACAGUAAGGCACGCGGUGAAUGCCAACGAACUCGCG .........(..(......(.(.(..(........................)..).).)......)..).......... >AAWZ02034331.1/1530-1450 GCUUGGCCCUUCGUGUUCACAGUGGACCUUGAUUUCAUGUGGACACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCCAGCC .........(..(......(.(.(..(..........................)..).).)......)..).......... >AAVX01073976.1/511-432 CUCGUUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCGGGCC .........(..(......(.(.(..(.........................)..).).)......)..).......... >AAVX01582238.1/229-149 CUCCUGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGUGCC .........(..(......(.(.(..(..........................)..).).)......)..).......... >AAVX01233922.1/370-449 CCCCCACUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGGGCC .........(..(......(.(.(..(.........................)..).).)......)..).......... >AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........(..(......(.(.(..(.........................)..).).)......)..).......... >CAAB02009061.1/535-451 UAAACUUUCCACGAAUUCGAUCACGGCGGACCUUAAUUUAUCUGCCCAUCAAUUCAGGCACGCGGAGAAUGCCAAGAGAGGAAUC ..............(..(......((.(..(..........................)..).).).....)...).......... >CR381647.10/84956-85035 UCUCGCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGAAUC ......(..(........(.((...(..........................)...)).)......)..).......... >AADN03007879.1/154-234 GCCUCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAGCC .......(..(........((.(...(..........................)...)).)......)..).......... >FP017274.3/18078-18158 UUUUUGCUCUUUGUGUUCACAGUGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCC .........(..(......(.(.(..(..........................)..).).)......)..).......... >AAQQ01613377.1/480-556 AGGCCCCUCUGCGUGUCCACAGCGGACCUGAUUUUAUGUCUAUACAUUUAGGCACGCGGUGAUGCAAGAGAGCGCUC ..(...(.........(....(.(..(........................)..).).)............)..).. >AY866113.1/459-538 GCUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(......(.(.(..(.........................)..).).)......)..).......... >AC021518.12/83108-83029 GCUCUGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(......(.(.(..(.........................)..).).)......)..).......... >AABS01000310.1/18792-18714 CGCUUAUGAGUCGUGUUUACUGUGGACCUUGCUGUGUGACGUCACAAUAAGGCACGCGGUGAAUGCCAAUCAAAAGUCG .........(..(......(.(.(..(........................)..).).)......)..)..........
4		(.YY.().CR.) (.NN.().CR.) ((C)G)G U(NU(R))			18	36.0
>AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >AANH01005533.1/39962-40041 CUUCCUCUCUCAGUGUUCACAGUGGACCUUGAUUUAAAAUCAUUCAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCC .......(....(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >AABS01000310.1/18792-18714 CGCUUAUGAGUCGUGUUUACUGUGGACCUUGCUGUGUGACGUCACAAUAAGGCACGCGGUGAAUGCCAAUCAAAAGUCG .........(..(......(.(.(..(.....(..(........)).....)..).).)......)..).......... >AANH01002585.1/13981-13901 UUGCCACUCCUCGUGUUCACGGCGGACCUUGAUUUAUUAGCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAAUC .........(..(......(.(.(..(.....(..(.......)...).....)..).).)......)..).......... >AC021518.12/83108-83029 GCUCUGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >AACT01007791.1/10034-10112 CCAAGUUCGAUCGUGUUUAUUGUGGACCUUGCCGUGUGACGUCACAGUAAGGCACGCGGUGAAUGCCAACGAACUCGCG .........(..(......(.(.(..(.......(..(....)..).....)..).).)......)..).......... >AAVX01582238.1/229-149 CUCCUGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGUGCC .........(..(......(.(.(..(.....(..(.......)...).....)..).).)......)..).......... >AAPN01339562.1/220-301 GCCUGUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUUUGUACACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCCAGCC .........(..(......(.(.(..(.....(..(.......)....).....)..).).)......)..).......... >FP017274.3/18078-18158 UUUUUGCUCUUUGUGUUCACAGUGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCC .........(..(......(.(.(..(.....(..(.......)...).....)..).).)......)..).......... >AAVX01233922.1/370-449 CCCCCACUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGGGCC .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >CAAB02005961.1/37252-37171 UGGUCUCUCCUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGCAGCU .........(..(......(.(.(..(.....(..(........)...).....)..).).)......)..).......... >AC055869.13/127592-127511 GCCUCUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAAUGGGGCU .........(..(......(.(.(...(....(..(........)...).....)..).).)......)..).......... >BX511178.6/169755-169675 UGCUUUUCUUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAUGGC ........(..(......(.(.(..(.....(..(........)...).....)..).).)......)....)........ >AY866113.1/459-538 GCUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >AAWZ02008050.1/15223-15144 CGCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGGGCU .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >AACT01004897.1/11101-11179 UGCGCUUCAUCCGCGUUUGCUGCGGACCUUCUUGUGUGACAUCACAAUAAGGCACGCGGUGAAUGCCAAUGAAACGUCA .........(..(......(.(.(..(.....(..(........)).....)..).).)......)..).......... >AACN010875145.1/527-607 ACUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAUUAGCGGAGCC .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..)........... >AAVX01073976.1/511-432 CUCGUUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCGGGCC .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..)..........

>AANH01005533.1/39962-40041 CUUCCUCUCUCAGUGUUCACAGUGGACCUUGAUUUAAAAUCAUUCAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCC .......(....(.....................................................)..).......... .......(....(..........(..(.........................)..)..........)..).......... .......(....(......(.(.(..(.........................)..).).)......)..).......... .......(....(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >BX511178.6/169755-169675 UGCUUUUCUUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAUGGC ........(..(.......................................................)....)........ ........(..(..........(..(...........................)..)..........)....)........ ........(..(......(.(.(..(...........................)..).).)......)....)........ ........(..(......(.(.(..(.....(..(........)...).....)..).).)......)....)........ >AANH01002585.1/13981-13901 UUGCCACUCCUCGUGUUCACGGCGGACCUUGAUUUAUUAGCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAAUC .........(..(......................................................)..).......... .........(..(..........(..(..........................)..)..........)..).......... .........(..(......(.(.(..(..........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(.......)...).....)..).).)......)..).......... >AAVX01233922.1/370-449 CCCCCACUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGGGCC .........(..(.....................................................)..).......... .........(..(..........(..(.........................)..)..........)..).......... .........(..(......(.(.(..(.........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >AAVX01582238.1/229-149 CUCCUGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUUUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGUGCC .........(..(.....................................................)...).......... .........(..(..........(..(..........................)..)..........)..).......... .........(..(......(.(.(..(..........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(.......)...).....)..).).)......)..).......... >AACT01007791.1/10034-10112 CCAAGUUCGAUCGUGUUUAUUGUGGACCUUGCCGUGUGACGUCACAGUAAGGCACGCGGUGAAUGCCAACGAACUCGCG .........(..(....................................................)..).......... .........(..(..........(..(........................)..)..........)..).......... .........(..(......(.(.(..(........................)..).).)......)..).......... .........(..(......(.(.(..(.......(..(....)..).....)..).).)......)..).......... >AC021518.12/83108-83029 GCUCUGCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(.....................................................)..).......... .........(..(..........(..(.........................)..)..........)..).......... .........(..(......(.(.(..(.........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >AACT01004897.1/11101-11179 UGCGCUUCAUCCGCGUUUGCUGCGGACCUUCUUGUGUGACAUCACAAUAAGGCACGCGGUGAAUGCCAAUGAAACGUCA .........(..(....................................................)..).......... .........(..(..........(..(........................)..)..........)..).......... .........(..(......(.(.(..(........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(........)).....)..).).)......)..).......... >AABS01000310.1/18792-18714 CGCUUAUGAGUCGUGUUUACUGUGGACCUUGCUGUGUGACGUCACAAUAAGGCACGCGGUGAAUGCCAAUCAAAAGUCG .........(..(....................................................)..).......... .........(..(..........(..(........................)..)..........)..).......... .........(..(......(.(.(..(........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(........)).....)..).).)......)..).......... >AACN010875145.1/527-607 ACUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAUUAGCGGAGCC .........(..(.....................................................)..)........... .........(..(..........(..(.........................)..)..........)..)........... .........(..(......(.(.(..(.........................)..).).)......)..)........... .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..)........... >AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........(..(.....................................................)..).......... .........(..(..........(..(.........................)..)..........)..).......... .........(..(......(.(.(..(.........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >CAAB02005961.1/37252-37171 UGGUCUCUCCUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGCAGCU .........(..(.......................................................)..).......... .........(..(..........(..(...........................)..)..........)..).......... .........(..(......(.(.(..(...........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(........)...).....)..).).)......)..).......... >FP017274.3/18078-18158 UUUUUGCUCUUUGUGUUCACAGUGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCC .........(..(......................................................)..).......... .........(..(..........(..(..........................)..)..........)..).......... .........(..(......(.(.(..(..........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(.......)...).....)..).).)......)..).......... >AC055869.13/127592-127511 GCCUCUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAAUGGGGCU .........(...(.....................................................)...).......... .........(..(..........(...(..........................)..)..........)..).......... .........(..(......(.(.(...(..........................)..).).)......)..).......... .........(..(......(.(.(...(....(..(........)...).....)..).).)......)..).......... >AAWZ02008050.1/15223-15144 CGCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGGGCU .........(..(.....................................................)..).......... .........(..(..........(..(.........................)..)..........)..).......... .........(..(......(.(.(..(.........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >AY866113.1/459-538 GCUCUGCCCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(.....................................................)..).......... .........(..(..........(..(.........................)..)..........)..).......... .........(..(......(.(.(..(.........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >AAVX01073976.1/511-432 CUCGUUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCGGGCC .........(..(.....................................................)..).......... .........(..(..........(..(.........................)..)..........)..).......... .........(..(......(.(.(..(.........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(.......)..).....)..).).)......)..).......... >AAPN01339562.1/220-301 GCCUGUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUUUGUACACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCCAGCC .........(...(.....................................................)...).......... .........(..(..........(..(...........................)..)..........)..).......... .........(..(......(.(.(..(...........................)..).).)......)..).......... .........(..(......(.(.(..(.....(..(.......)....).....)..).).)......)..).......... >BAAE01194669.1/2121-2201 UUUCCACUCCUCGUGUUCACAGCGGACUUUAAUUGAUUAAGCGCACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAAUC .........(..(......................................................)..).......... .........(..(..........(..(..........................)..)..........)..).......... .........(..(......(.(.(..(..........................)..).).)......)..).......... >AADK01010415.1/6990-7072 GUCCACCUCCUCGCGUUCACUGCCGGAGCCGUUAUGUAUAUUUAAAAUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACUC .........(..(........................................................)..).......... .........(..(...........(...(..........................)..)..........)..).......... .........(..(......(.(..(...(..........................)..).).)......)..).......... >AANH01005777.1/13142-13063 UUGUGUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCUUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAUUACCC .........(..(.....................................................)..).......... .........(..(..........(..(.........................)..)..........)..).......... .........(..(......(.(.(..(.........................)..).).)......)..).......... >CR381647.10/84956-85035 UCUCGCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAAGAAUC ......(....(......................................................)..).......... ......(..(...........(...(..........................)...).........)..).......... ......(..(........(.((...(..........................)...)).)......)..).......... >AAQQ01613377.1/480-556 AGGCCCCUCUGCGUGUCCACAGCGGACCUGAUUUUAUGUCUAUACAUUUAGGCACGCGGUGAUGCAAGAGAGCGCUC ..(...(................................................................)..).. ..(...(................(..(........................)..)................)..).. ..(...(.........(....(.(..(........................)..).).)............)..).. >CAAB02009061.1/535-451 UAAACUUUCCACGAAUUCGAUCACGGCGGACCUUAAUUUAUCUGCCCAUCAAUUCAGGCACGCGGAGAAUGCCAAGAGAGGAAUC ..............(..(....................................................)...).......... ..............(..(.........(..(..........................)..).........)...).......... ..............(..(......((.(..(..........................)..).).).....)...).......... >AAGJ04089024.1/54216-54298 AUCCCGUUCUUAGUGUUCACUGUGAUCCUUGAUUUAUAUUCUAAAACAAUUAAGGCACGCGGUGAAUGCCAAGGCUCGAGGGU .....(..(...............................................................).....).... .....(..(..............(..(...........................)..)..............).....).... .....(..(..........(.(.(..(...........................)..).).)..........).....).... >AAWZ02034331.1/1530-1450 GCUUGGCCCUUCGUGUUCACAGUGGACCUUGAUUUCAUGUGGACACAAUUAAGGCACGCGGUGAAUGCCAAGAGCCCAGCC .........(..(......................................................)..).......... .........(..(..........(..(..........................)..)..........)..).......... .........(..(......(.(.(..(..........................)..).).)......)..).......... >AADN03007879.1/154-234 GCCUCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAGCC .......(....(......................................................)..).......... .......(..(...........(...(..........................)...).........)..).......... .......(..(........((.(...(..........................)...)).)......)..).......... >AAWZ02009650.1/4800-4719 GCCCCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCUAAGAACGAGGCU ...(...(.................................................................)...).... ...(...(...............(...(..........................)..)...............)...).... ...(...(...........(.(.(...(..........................)..).).)...........)...).... >BAAF04094312.1/9605-9526 UUUCCUCUCUCAGUGUUCACAGUGGACCUUGAUUUCAAAACAGUCAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAUCC .......(....(.....................................................)..).......... .......(....(..........(..(.........................)..)..........)..).......... .......(....(......(.(.(..(.........................)..).).)......)..).......... >AAJJ01000069.1/11639-11717 GUCAUUCUCCUAGUGUUCACUGUUGGCCUGUAUGUUUUUGUAACGCAUAAGGCACGCGGUGAAUGCCAAGAGCAGACUU ........(...(....................................................)...)......... ..(...(.............(...(............................)...).............)..).... >BX248497.11/64645-64566 CUCUCGCUGUACGUGUUCACAGUGGACCUUGAUUUAUUGUAUUUCAAUUAAGGCACGCGGUGAAUGCCAACAGCACAGCC ..(...(.................................................................)..).... ..(...(..............(..(............................)...)..............)..).... >AAZO01006175.1/169136-169059 UGCCUGCUCCUCGUGUUCACUGUUGGCCUUGAUGUUUUAAUGAUCAUAAGGCACGCGGUGAAUGCCAAGAGCUAGCUC .........(..(...................................................)..).......... .........(..(........(..(..........................)...)........)..).......... >BX323067.11/106925-107004 CUCUGGCUUUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCUUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAGCC .........(..(.....................................................)..).......... .........(..(..........(..(.........................)..)..........)..).......... >AL096828.29/88058-88137 GGCCCCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGCGCC .(..(.....................................................................)...). .(..(................(...(..........................)...).................)...). >AANI01016269.1/7414-7490 GUUUUUCUCCUGGUAUCCACUGUAGGCCUCUAUGAAUUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGA ....(..(............................................................)...).... ...(..(.............(...(..........................)...).............)..).... >AAQB01006734.1/278415-278339 GUUUUUCUCCUGGUAUCCACUGCAGGCCUAUAUGUUAUUUGACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGA ..(....(............................................................)...).... ...(..(..............(..(..........................)..)..............)..).... >AEVX01011340.1/56538-56623 UCUGUGCUCCUUGCGUUCACUGCGGGCUUCCAUGUGCCAACUUUUCAAAAUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACCA .......(....(...........................................................)..).......... .......(....(..........(.....(............................)..)..........)..).......... >AADN03008224.1/1979-2058 CCCCAGCGUUUUGUGUUCACUGCAGACCUUGAUUUAAUGUCACACGAUUAAGGCACGCAGUGAAUGCCAAAGUUUGGGGC .........(..(.....................................................)..).......... .........(..(..........(..(.........................)..)..........)..).......... >AAWZ02006431.1/94608-94528 GCCCUUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGCGGCU .(...(....................................................................)...).. .(...(...............(..(.............................)...)...............)...).. >AC189672.3/51235-51156 UCGACACGCUUCGUGUUCACUGUCUGUCUUGAUCUUUUAUUCGAGAAUUAAGGCACGCGGUGAAUGCCAAGCGUGGGACG .........(..(.....................................................)..).......... .........(..(........(..(.............................)..)........)..).......... >BAAF04105842.1/7834-7753 UUUUCUCUCCUCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGCGACC .........(..(.......................................................)..).......... >AAWU01000987.1/43993-44075 GUUUUUCUCCUGGUGUUCACUGCCGGCCUGUAUGUCCUAUUGAGGUUUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGGACGA ..(...(....................................................................)..).... >AAAB01008984.1/10212826-10212908 GUUUUUCUCCUGGUGUUCACUGUAGGCCUGUAUGUUCUAUUGCGGAUUUCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGA ...(..(....................................................................)..).... >AASU01002643.1/1016-1092 GUUUUUCUCCUGGUAUCCACUGUAGGCCUAUAUGUAUUUCCACCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGC ....(..(............................................................)...).... >AAGE02000531.1/21424-21342 GUUUUUCUCCUGGUAUCCACUGCCGGCCUAUAUGUCCUAUUUCGGUACUCAUAAGGCACGCGGUGAAUGCCAAGAGCGAACGC ....(..(..................................................................)...)....

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	(.YY.().CR.)			< 0.001		16.1

AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........1.........2.........3.........4.........5.........6.........7.........8 12345678901234567890123456789012345678901234567890123456789012345678901234567890
2	(.NN.().CR.)			< 0.001		7.85

AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........1.........2.........3.........4.........5.........6.........7.........8 12345678901234567890123456789012345678901234567890123456789012345678901234567890
3	((C)G)G			< 0.001		4.54

AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........1.........2.........3.........4.........5.........6.........7.........8 12345678901234567890123456789012345678901234567890123456789012345678901234567890
4	U(NU(R))			< 0.001		2.14

AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........1.........2.........3.........4.........5.........6.........7.........8 12345678901234567890123456789012345678901234567890123456789012345678901234567890
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	(.NN.().CR.)			< 0.001		7.85

AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........1.........2.........3.........4.........5.........6.........7.........8 12345678901234567890123456789012345678901234567890123456789012345678901234567890
2	U(U(U))			< 0.001		5.84

AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........1.........2.........3.........4.........5.........6.........7.........8 12345678901234567890123456789012345678901234567890123456789012345678901234567890
3	((C)A)C			< 0.001		4.2

AADN03002517.1/215257-215336 CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC CUCUGCCUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGCGGAUCC .........1.........2.........3.........4.........5.........6.........7.........8 12345678901234567890123456789012345678901234567890123456789012345678901234567890
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).