D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-204   (Rfam: RF00646)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
U(CA(Y))
(.CN.().C.)
(YYNNR)
N(U(R))
U(RG(R))
93.8
100.0
81.2
100.0
78.1
U(CA(Y))
(YYNNR)
N(U(R))
U(RG(R))

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.5 %
(± 0.0728 %)
Decision tree:

5-fold cross-validation: 87.5 %
(± 2.64 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 90.2 %
(± 4.27 %)
of AAGW02050442.1/67198-67299
AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
((((.......(.(((((((((((((((((((((((..(((((.((((..((.....).).)))))))))..)))))))))))))))))))))))).)))).
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012

abstract shape: ()

Number of sequences
Structure ORBs (out of 32) (%)
1 U(CA(Y))
 26 81.2
>AY866211.1/449-550
CUUCACUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
...................................(..(..............................)..).............................
>AAQQ01222771.1/904-1005
UUCACUUGAUCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUUUGAGUGGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCCAC
...................................(..(..............................)..).............................
>AAFR03022736.1/24229-24330
UUCAACUGACUAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAAAUCAGAGUGGGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUUCUAC
...................................(..(..............................)..).............................
>AAWZ02027695.1/30269-30168
CUGCCUGGAUCACAUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCGCAGAGAGGCAGGGACAGCAAAGGGGUGCUCAGCUGUUGUCUCUAAC
...................................(..(..............................)..).............................
>AY866210.1/448-549
UUCACCCAGCCAUGUGACUUGUGGACUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
...................................(..(..............................)..).............................
>CR450827.5/52029-51927
UAGUGACCAGUUUGUGACCUCCUGGGUUUCCCUUUGUCAUCCUAUGCCUGCAGUUCCUGAUGAGGCUGGGACAGCAAAGGGAGGUUCAGAUGUCGACCUGUAC
....................................(..(..............................)..).............................
>BAAE01064700.1/3191-3291
GGAGAUCCCUUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUUGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCACCACUGAC
...................................(..(.............................)..).............................
>BX323080.10/77917-77816
CCUCCCUUGUCAUGUGACCUGUGGACUUCCCUUUGUCAUCCUAUGCCUGGAGUAAUAGAGGGGGCUGGGAAGUCAAAGGGACGCUCAGGCGUCAUCAUUCGC
.........(..(................................................................................)).......
>AABR05009647.1/32943-33044
UCAGCUUGGACCUGUGACCUCUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGCCUCUGAGUGGGGCAAGGACAGCAAAGGGGGGCUCAGUGGUCACCUCUACU
...................................(..(..............................)..).............................
>AANN01198559.1/1392-1493
CUCAGUUGGUACUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUAUGAGUAGGGCAGGGACAGCAAAGGGGUGCCCACACAUCACUGUCACA
...................................(..(..............................)..).............................
>AAPN01089717.1/13112-13213
GCCGGUGAUCCUUGUGACUGCUGAGCUUCCCUUUGUCAUCCUAUGCCUGGAAGUCAAAAUGGGGCAGGGACAGCAAAGGGAUGAUCAACCGUCACCUCCAAC
...................................(..(..............................)..).............................
>AAVX01164390.1/969-1070
UGUCCACAACUGUGUGACCUGUGGGUUUCCCUUUGUCAUCCUAUGCCUGGGAGUAUCAGUGAGGCAGGGGGGACAAAGGGGUGCUCAGCUGUCAACUCCAAC
...................................(..(...............................).).............................
>AAEX03002224.1/126026-126127
UUCAUCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGAGGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACCUCUCAC
...................................(..(..............................)..).............................
>AAGV020630976.1/4916-5016
CCCAGCUGGCCAUGGGACCUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGAUCCGAGUGGGGCAGGGACAACAAAGGGGUGCUCAGGCGUCACCUCCACA
...................................(..(.............................)..).............................
>AADN03005974.1/43587-43486
CUACUGAGACUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCACAGUGAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUCUUCC
...................................(..(..............................)..).............................
>AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...................................(..(..............................)..).............................
>AY866209.1/453-554
CUUCACUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
...................................(..(..............................)..).............................
>AAQR03168651.1/25332-25231
UUCACCUGGCCAUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUCGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCACA
...................................(..(..............................)..).............................
>AC009562.9/144771-144872
UUCACCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
...................................(..(..............................)..).............................
>AAKN02016253.1/66521-66421
UUCACCCAGCCACGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAUAGGGCAGGGACUGCAAAGGGGUACUCAGUUGUCACCGUCUGC
...................................(..(.............................)..).............................
>AAYZ01172228.1/6125-6024
UUCACCUGGCUGUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGGGCUCAGUCGUUACCCUCUGC
...................................(..(..............................)..).............................
>CAAE01014555.1/947630-947730
GACAGAGAACUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCCGUCACCACUGAC
...................................(..(..............................).).............................
>AANH01001574.1/139065-138965
GUCGUCCUCCUCUGGGACCUAUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAACUGUCACCACCGAC
...................................(..(..............................).).............................
>AANH01001880.1/194334-194437
AUCAUCCGGUCAUGUGACUUAUGGCCUUCCCUUUGUCAUCCUAUGCCUGGACUCAUACAAAAGGGGCUGGGAAGGCAAAGGGACGCCCAGUCGUCAUACUAGCA
....................................................(..(.....)).........................................
>AANH01011880.1/65628-65527
GGUUACCAAUCAUGUGACCCGUGGGUUUCCCUUUGUCAUCCUUUGCCUGGAGGUGUCUGUAAGGCAGCGGCAGCAAAGGGAGGCUCAGCCAUCACUCACUUC
...................................(..(...............................).).............................
>AAFC03027753.1/101899-102000
CUCCCCUGGCUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUUUGCCCAGGGUUCUGAGUGGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCCAC
...................................(..(..............................)..).............................
2 U(CA(Y))
(.CN.().C.)
 24 75.0
>CAAE01014555.1/947630-947730
GACAGAGAACUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCCGUCACCACUGAC
...(.......(.......................(..(..............................).).......................).)...
>CR450827.5/52029-51927
UAGUGACCAGUUUGUGACCUCCUGGGUUUCCCUUUGUCAUCCUAUGCCUGCAGUUCCUGAUGAGGCUGGGACAGCAAAGGGAGGUUCAGAUGUCGACCUGUAC
......(..(..........................(..(..............................)..)......................)..)...
>AAWZ02027695.1/30269-30168
CUGCCUGGAUCACAUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCGCAGAGAGGCAGGGACAGCAAAGGGGUGCUCAGCUGUUGUCUCUAAC
........(....(.....................(..(..............................)..).....................).).....
>AANN01198559.1/1392-1493
CUCAGUUGGUACUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUAUGAGUAGGGCAGGGACAGCAAAGGGGUGCCCACACAUCACUGUCACA
.(...(.............................(..(..............................)..)..........................).)
>AAYZ01172228.1/6125-6024
UUCACCUGGCUGUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGGGCUCAGUCGUUACCCUCUGC
.......(...(.......................(..(..............................)..)......................)..)...
>AY866211.1/449-550
CUUCACUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
.......(...(.......................(..(..............................)..)......................)..)...
>AAGV020630976.1/4916-5016
CCCAGCUGGCCAUGGGACCUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGAUCCGAGUGGGGCAGGGACAACAAAGGGGUGCUCAGGCGUCACCUCCACA
.......(...(.......................(..(.............................)..).......................).)...
>AADN03005974.1/43587-43486
CUACUGAGACUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCACAGUGAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUCUUCC
.......(...(.......................(..(..............................)..)......................)..)...
>AC009562.9/144771-144872
UUCACCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
.......(...(.......................(..(..............................)..)......................)...)..
>AANH01011880.1/65628-65527
GGUUACCAAUCAUGUGACCCGUGGGUUUCCCUUUGUCAUCCUUUGCCUGGAGGUGUCUGUAAGGCAGCGGCAGCAAAGGGAGGCUCAGCCAUCACUCACUUC
..(........(.......................(..(...............................).)......................).)....
>AAEX03002224.1/126026-126127
UUCAUCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGAGGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACCUCUCAC
.......(...(.......................(..(..............................)..)......................)...)..
>AY866209.1/453-554
CUUCACUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
.......(...(.......................(..(..............................)..)......................)...)..
>AAFC03027753.1/101899-102000
CUCCCCUGGCUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUUUGCCCAGGGUUCUGAGUGGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCCAC
.......(...(.......................(..(..............................)..)......................)...)..
>AAPN01089717.1/13112-13213
GCCGGUGAUCCUUGUGACUGCUGAGCUUCCCUUUGUCAUCCUAUGCCUGGAAGUCAAAAUGGGGCAGGGACAGCAAAGGGAUGAUCAACCGUCACCUCCAAC
......(....(.......................(..(..............................)..)......................)..)...
>BAAE01064700.1/3191-3291
GGAGAUCCCUUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUUGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCACCACUGAC
.......(...(.......................(..(.............................)..)......................)..)...
>AAQQ01222771.1/904-1005
UUCACUUGAUCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUUUGAGUGGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCCAC
........(...(......................(..(..............................)..)......................)..)...
>AABR05009647.1/32943-33044
UCAGCUUGGACCUGUGACCUCUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGCCUCUGAGUGGGGCAAGGACAGCAAAGGGGGGCUCAGUGGUCACCUCUACU
.........(..(......................(..(..............................)..)......................)..)...
>AANH01001574.1/139065-138965
GUCGUCCUCCUCUGGGACCUAUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAACUGUCACCACCGAC
...(.......(.......................(..(..............................).)......................)..)...
>AAQR03168651.1/25332-25231
UUCACCUGGCCAUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUCGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCACA
........(..(.......................(..(..............................)..)......................)...)..
>AY866210.1/448-549
UUCACCCAGCCAUGUGACUUGUGGACUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
........(..(.......................(..(..............................)..)......................)...)..
>AAFR03022736.1/24229-24330
UUCAACUGACUAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAAAUCAGAGUGGGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUUCUAC
....(......(.......................(..(..............................)..).......................)..)..
>AAVX01164390.1/969-1070
UGUCCACAACUGUGUGACCUGUGGGUUUCCCUUUGUCAUCCUAUGCCUGGGAGUAUCAGUGAGGCAGGGGGGACAAAGGGGUGCUCAGCUGUCAACUCCAAC
...(.......(.......................(..(...............................).)......................)...)..
>AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...(.......(.......................(..(..............................)..)......................).)....
>AAKN02016253.1/66521-66421
UUCACCCAGCCACGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAUAGGGCAGGGACUGCAAAGGGGUACUCAGUUGUCACCGUCUGC
...(.......(.......................(..(.............................)..)........................).)..
3 U(CA(Y))
(.CN.().C.)
(YYNNR)
 21 65.6
>AAWZ02027695.1/30269-30168
CUGCCUGGAUCACAUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCGCAGAGAGGCAGGGACAGCAAAGGGGUGCUCAGCUGUUGUCUCUAAC
........(....(.....................(..(.............(.....)..........)..).....................).).....
>AAGV020630976.1/4916-5016
CCCAGCUGGCCAUGGGACCUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGAUCCGAGUGGGGCAGGGACAACAAAGGGGUGCUCAGGCGUCACCUCCACA
.......(...(.......................(..(............(.....)..........)..).......................).)...
>AAYZ01172228.1/6125-6024
UUCACCUGGCUGUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGGGCUCAGUCGUUACCCUCUGC
.......(...(.......................(..(............(.....)...........)..)......................)..)...
>AAQR03168651.1/25332-25231
UUCACCUGGCCAUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUCGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCACA
........(..(.......................(..(............(.....)...........)..)......................)...)..
>AY866209.1/453-554
CUUCACUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
.......(...(.......................(..(............(.....)...........)..)......................)...)..
>AY866210.1/448-549
UUCACCCAGCCAUGUGACUUGUGGACUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
........(..(.......................(..(............(.....)...........)..)......................)...)..
>AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...(.......(.......................(..(............(.....)...........)..)......................).)....
>AC009562.9/144771-144872
UUCACCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
.......(...(.......................(..(............(.....)...........)..)......................)...)..
>AAKN02016253.1/66521-66421
UUCACCCAGCCACGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAUAGGGCAGGGACUGCAAAGGGGUACUCAGUUGUCACCGUCUGC
...(.......(.......................(..(............(.....)..........)..)........................).)..
>AAQQ01222771.1/904-1005
UUCACUUGAUCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUUUGAGUGGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCCAC
........(...(......................(..(............(.....)...........)..)......................)..)...
>AAEX03002224.1/126026-126127
UUCAUCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGAGGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACCUCUCAC
.......(...(.......................(..(............(.....)...........)..)......................)...)..
>AANH01001574.1/139065-138965
GUCGUCCUCCUCUGGGACCUAUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAACUGUCACCACCGAC
...(.......(.......................(..(............(.....)...........).)......................)..)...
>AABR05009647.1/32943-33044
UCAGCUUGGACCUGUGACCUCUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGCCUCUGAGUGGGGCAAGGACAGCAAAGGGGGGCUCAGUGGUCACCUCUACU
.........(..(......................(..(............(.....)...........)..)......................)..)...
>CR450827.5/52029-51927
UAGUGACCAGUUUGUGACCUCCUGGGUUUCCCUUUGUCAUCCUAUGCCUGCAGUUCCUGAUGAGGCUGGGACAGCAAAGGGAGGUUCAGAUGUCGACCUGUAC
......(..(..........................(..(.............(.....)..........)..)......................)..)...
>AADN03005974.1/43587-43486
CUACUGAGACUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCACAGUGAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUCUUCC
.......(...(.......................(..(.............(.....)..........)..)......................)..)...
>CAAE01014555.1/947630-947730
GACAGAGAACUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCCGUCACCACUGAC
...(.......(.......................(..(............(.....)...........).).......................).)...
>BAAE01064700.1/3191-3291
GGAGAUCCCUUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUUGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCACCACUGAC
.......(...(.......................(..(............(.....)..........)..)......................)..)...
>AAFC03027753.1/101899-102000
CUCCCCUGGCUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUUUGCCCAGGGUUCUGAGUGGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCCAC
.......(...(.......................(..(............(.....)...........)..)......................)...)..
>AAFR03022736.1/24229-24330
UUCAACUGACUAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAAAUCAGAGUGGGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUUCUAC
....(......(.......................(..(.............(.....)..........)..).......................)..)..
>AY866211.1/449-550
CUUCACUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
.......(...(.......................(..(............(.....)...........)..)......................)..)...
>AAPN01089717.1/13112-13213
GCCGGUGAUCCUUGUGACUGCUGAGCUUCCCUUUGUCAUCCUAUGCCUGGAAGUCAAAAUGGGGCAGGGACAGCAAAGGGAUGAUCAACCGUCACCUCCAAC
......(....(.......................(..(.............(.....)..........)..)......................)..)...
4 U(CA(Y))
(.CN.().C.)
(YYNNR)
N(U(R))
 14 43.8
>AADN03005974.1/43587-43486
CUACUGAGACUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCACAGUGAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUCUUCC
.......(...(.......................(..(...(.(.......(.....).....))...)..)......................)..)...
>AABR05009647.1/32943-33044
UCAGCUUGGACCUGUGACCUCUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGCCUCUGAGUGGGGCAAGGACAGCAAAGGGGGGCUCAGUGGUCACCUCUACU
.........(..(......................(..(...(.(......(.....).....).)...)..)......................)..)...
>BAAE01064700.1/3191-3291
GGAGAUCCCUUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUUGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCACCACUGAC
.......(...(.......................(..(...(.(......(.....).....))...)..)......................)..)...
>AAGV020630976.1/4916-5016
CCCAGCUGGCCAUGGGACCUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGAUCCGAGUGGGGCAGGGACAACAAAGGGGUGCUCAGGCGUCACCUCCACA
.......(...(.......................(..(...(.(......(.....).....))...)..).......................).)...
>AAFR03022736.1/24229-24330
UUCAACUGACUAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAAAUCAGAGUGGGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUUCUAC
....(......(.......................(..(...(.(.......(.....).....))...)..).......................)..)..
>AAQQ01222771.1/904-1005
UUCACUUGAUCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUUUGAGUGGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCCAC
........(...(......................(..(...(.(......(.....)......))...)..)......................)..)...
>AAQR03168651.1/25332-25231
UUCACCUGGCCAUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUCGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCACA
........(..(.......................(..(...(.(......(.....).....).)...)..)......................)...)..
>AY866209.1/453-554
CUUCACUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
.......(...(.......................(..(...(.(......(.....).....).)...)..)......................)...)..
>AANH01001574.1/139065-138965
GUCGUCCUCCUCUGGGACCUAUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAACUGUCACCACCGAC
...(.......(.......................(..(...(.(......(.....).....).)...).)......................)..)...
>AAEX03002224.1/126026-126127
UUCAUCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGAGGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACCUCUCAC
.......(...(.......................(..(...(.(......(.....)......))...)..)......................)...)..
>AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...(.......(.......................(..(...(.(......(.....).....).)...)..)......................).)....
>AAYZ01172228.1/6125-6024
UUCACCUGGCUGUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGGGCUCAGUCGUUACCCUCUGC
.......(...(.......................(..(...(.(......(.....)......))...)..)......................)..)...
>CAAE01014555.1/947630-947730
GACAGAGAACUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCCGUCACCACUGAC
...(.......(.......................(..(...(.(......(.....).....).)...).).......................).)...
>AAPN01089717.1/13112-13213
GCCGGUGAUCCUUGUGACUGCUGAGCUUCCCUUUGUCAUCCUAUGCCUGGAAGUCAAAAUGGGGCAGGGACAGCAAAGGGAUGAUCAACCGUCACCUCCAAC
......(....(.......................(..(...(.(.......(.....).....))...)..)......................)..)...
5 U(CA(Y))
(.CN.().C.)
(YYNNR)
N(U(R))
U(RG(R))
 11 34.4
>AAFR03022736.1/24229-24330
UUCAACUGACUAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAAAUCAGAGUGGGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUUCUAC
....(......(.......................(..(...(.(..(..(.(.....).))..))...)..).......................)..)..
>CAAE01014555.1/947630-947730
GACAGAGAACUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCCGUCACCACUGAC
...(.......(.......................(..(...(.(..(..((.....).))..).)...).).......................).)...
>AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...(.......(.......................(..(...(.(..(..((.....).))..).)...)..)......................).)....
>AAEX03002224.1/126026-126127
UUCAUCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGAGGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACCUCUCAC
.......(...(.......................(..(...(.(..(..((.....).).)..))...)..)......................)...)..
>BAAE01064700.1/3191-3291
GGAGAUCCCUUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUUGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCACCACUGAC
.......(...(.......................(..(...(.(..(..((.....)).)..))...)..)......................)..)...
>AY866209.1/453-554
CUUCACUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
.......(...(.......................(..(...(.(..(..((.....).))..).)...)..)......................)...)..
>AANH01001574.1/139065-138965
GUCGUCCUCCUCUGGGACCUAUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAACUGUCACCACCGAC
...(.......(.......................(..(...(.(..(..((.....)).)..).)...).)......................)..)...
>AAPN01089717.1/13112-13213
GCCGGUGAUCCUUGUGACUGCUGAGCUUCCCUUUGUCAUCCUAUGCCUGGAAGUCAAAAUGGGGCAGGGACAGCAAAGGGAUGAUCAACCGUCACCUCCAAC
......(....(.......................(..(...(.(..(..(.(.....).))..))...)..)......................)..)...
>AAYZ01172228.1/6125-6024
UUCACCUGGCUGUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGGGCUCAGUCGUUACCCUCUGC
.......(...(.......................(..(...(.(..(..((.....).).)..))...)..)......................)..)...
>AAGV020630976.1/4916-5016
CCCAGCUGGCCAUGGGACCUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGAUCCGAGUGGGGCAGGGACAACAAAGGGGUGCUCAGGCGUCACCUCCACA
.......(...(.......................(..(...(.(..(..((.....).))..))...)..).......................).)...
>AADN03005974.1/43587-43486
CUACUGAGACUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCACAGUGAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUCUUCC
.......(...(.......................(..(...(.(..(..(.(.....).))..))...)..)......................)..)...

>AAFR03022736.1/24229-24330
UUCAACUGACUAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAAAUCAGAGUGGGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUUCUAC
...................................(..(..............................)..).............................
....(......(.......................(..(..............................)..).......................)..)..
....(......(.......................(..(.............(.....)..........)..).......................)..)..
....(......(.......................(..(...(.(.......(.....).....))...)..).......................)..)..
....(......(.......................(..(...(.(..(..(.(.....).))..))...)..).......................)..)..
>BAAE01064700.1/3191-3291
GGAGAUCCCUUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUUGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCACCACUGAC
...................................(..(.............................)..).............................
.......(...(.......................(..(.............................)..)......................)..)...
.......(...(.......................(..(............(.....)..........)..)......................)..)...
.......(...(.......................(..(...(.(......(.....).....))...)..)......................)..)...
.......(...(.......................(..(...(.(..(..((.....)).)..))...)..)......................)..)...
>AAPN01089717.1/13112-13213
GCCGGUGAUCCUUGUGACUGCUGAGCUUCCCUUUGUCAUCCUAUGCCUGGAAGUCAAAAUGGGGCAGGGACAGCAAAGGGAUGAUCAACCGUCACCUCCAAC
...................................(..(..............................)..).............................
......(....(.......................(..(..............................)..)......................)..)...
......(....(.......................(..(.............(.....)..........)..)......................)..)...
......(....(.......................(..(...(.(.......(.....).....))...)..)......................)..)...
......(....(.......................(..(...(.(..(..(.(.....).))..))...)..)......................)..)...
>AAEX03002224.1/126026-126127
UUCAUCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGAGGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACCUCUCAC
...................................(..(..............................)..).............................
.......(...(.......................(..(..............................)..)......................)...)..
.......(...(.......................(..(............(.....)...........)..)......................)...)..
.......(...(.......................(..(...(.(......(.....)......))...)..)......................)...)..
.......(...(.......................(..(...(.(..(..((.....).).)..))...)..)......................)...)..
>AAGV020630976.1/4916-5016
CCCAGCUGGCCAUGGGACCUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGAUCCGAGUGGGGCAGGGACAACAAAGGGGUGCUCAGGCGUCACCUCCACA
...................................(..(.............................)..).............................
.......(...(.......................(..(.............................)..).......................).)...
.......(...(.......................(..(............(.....)..........)..).......................).)...
.......(...(.......................(..(...(.(......(.....).....))...)..).......................).)...
.......(...(.......................(..(...(.(..(..((.....).))..))...)..).......................).)...
>AADN03005974.1/43587-43486
CUACUGAGACUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCACAGUGAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUCUUCC
...................................(..(..............................)..).............................
.......(...(.......................(..(..............................)..)......................)..)...
.......(...(.......................(..(.............(.....)..........)..)......................)..)...
.......(...(.......................(..(...(.(.......(.....).....))...)..)......................)..)...
.......(...(.......................(..(...(.(..(..(.(.....).))..))...)..)......................)..)...
>AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...................................(..(..............................)..).............................
...(.......(.......................(..(..............................)..)......................).)....
...(.......(.......................(..(............(.....)...........)..)......................).)....
...(.......(.......................(..(...(.(......(.....).....).)...)..)......................).)....
...(.......(.......................(..(...(.(..(..((.....).))..).)...)..)......................).)....
>AY866209.1/453-554
CUUCACUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
...................................(..(..............................)..).............................
.......(...(.......................(..(..............................)..)......................)...)..
.......(...(.......................(..(............(.....)...........)..)......................)...)..
.......(...(.......................(..(...(.(......(.....).....).)...)..)......................)...)..
.......(...(.......................(..(...(.(..(..((.....).))..).)...)..)......................)...)..
>AAYZ01172228.1/6125-6024
UUCACCUGGCUGUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGGGCUCAGUCGUUACCCUCUGC
...................................(..(..............................)..).............................
.......(...(.......................(..(..............................)..)......................)..)...
.......(...(.......................(..(............(.....)...........)..)......................)..)...
.......(...(.......................(..(...(.(......(.....)......))...)..)......................)..)...
.......(...(.......................(..(...(.(..(..((.....).).)..))...)..)......................)..)...
>CAAE01014555.1/947630-947730
GACAGAGAACUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCCGUCACCACUGAC
...................................(..(..............................).).............................
...(.......(.......................(..(..............................).).......................).)...
...(.......(.......................(..(............(.....)...........).).......................).)...
...(.......(.......................(..(...(.(......(.....).....).)...).).......................).)...
...(.......(.......................(..(...(.(..(..((.....).))..).)...).).......................).)...
>AANH01001574.1/139065-138965
GUCGUCCUCCUCUGGGACCUAUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAACUGUCACCACCGAC
...................................(..(..............................).).............................
...(.......(.......................(..(..............................).)......................)..)...
...(.......(.......................(..(............(.....)...........).)......................)..)...
...(.......(.......................(..(...(.(......(.....).....).)...).)......................)..)...
...(.......(.......................(..(...(.(..(..((.....)).)..).)...).)......................)..)...
>AAQQ01222771.1/904-1005
UUCACUUGAUCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUUUGAGUGGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCCAC
...................................(..(..............................)..).............................
........(...(......................(..(..............................)..)......................)..)...
........(...(......................(..(............(.....)...........)..)......................)..)...
........(...(......................(..(...(.(......(.....)......))...)..)......................)..)...
>AABR05009647.1/32943-33044
UCAGCUUGGACCUGUGACCUCUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGCCUCUGAGUGGGGCAAGGACAGCAAAGGGGGGCUCAGUGGUCACCUCUACU
...................................(..(..............................)..).............................
.........(..(......................(..(..............................)..)......................)..)...
.........(..(......................(..(............(.....)...........)..)......................)..)...
.........(..(......................(..(...(.(......(.....).....).)...)..)......................)..)...
>AAQR03168651.1/25332-25231
UUCACCUGGCCAUGUGACGUGUGGGCUUCCCUUUGUCAUCCUUUGCCUCGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCACA
...................................(..(..............................)..).............................
........(..(.......................(..(..............................)..)......................)...)..
........(..(.......................(..(............(.....)...........)..)......................)...)..
........(..(.......................(..(...(.(......(.....).....).)...)..)......................)...)..
>AY866211.1/449-550
CUUCACUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
...................................(..(..............................)..).............................
.......(...(.......................(..(..............................)..)......................)..)...
.......(...(.......................(..(............(.....)...........)..)......................)..)...
>AAWZ02027695.1/30269-30168
CUGCCUGGAUCACAUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCGCAGAGAGGCAGGGACAGCAAAGGGGUGCUCAGCUGUUGUCUCUAAC
...................................(..(..............................)..).............................
........(....(.....................(..(..............................)..).....................).).....
........(....(.....................(..(.............(.....)..........)..).....................).).....
>AY866210.1/448-549
UUCACCCAGCCAUGUGACUUGUGGACUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
...................................(..(..............................)..).............................
........(..(.......................(..(..............................)..)......................)...)..
........(..(.......................(..(............(.....)...........)..)......................)...)..
>CR450827.5/52029-51927
UAGUGACCAGUUUGUGACCUCCUGGGUUUCCCUUUGUCAUCCUAUGCCUGCAGUUCCUGAUGAGGCUGGGACAGCAAAGGGAGGUUCAGAUGUCGACCUGUAC
....................................(..(..............................)..).............................
......(..(..........................(..(..............................)..)......................)..)...
......(..(..........................(..(.............(.....)..........)..)......................)..)...
>AC009562.9/144771-144872
UUCACCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUCGCCUAGGGCUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUUGUCACUUCCCAC
...................................(..(..............................)..).............................
.......(...(.......................(..(..............................)..)......................)...)..
.......(...(.......................(..(............(.....)...........)..)......................)...)..
>AAKN02016253.1/66521-66421
UUCACCCAGCCACGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAUAGGGCAGGGACUGCAAAGGGGUACUCAGUUGUCACCGUCUGC
...................................(..(.............................)..).............................
...(.......(.......................(..(.............................)..)........................).)..
...(.......(.......................(..(............(.....)..........)..)........................).)..
>AAFC03027753.1/101899-102000
CUCCCCUGGCUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUUUGCCCAGGGUUCUGAGUGGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCUCCCAC
...................................(..(..............................)..).............................
.......(...(.......................(..(..............................)..)......................)...)..
.......(...(.......................(..(............(.....)...........)..)......................)...)..
>AANN01198559.1/1392-1493
CUCAGUUGGUACUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUAUGAGUAGGGCAGGGACAGCAAAGGGGUGCCCACACAUCACUGUCACA
...................................(..(..............................)..).............................
.(...(.............................(..(..............................)..)..........................).)
>AAVX01164390.1/969-1070
UGUCCACAACUGUGUGACCUGUGGGUUUCCCUUUGUCAUCCUAUGCCUGGGAGUAUCAGUGAGGCAGGGGGGACAAAGGGGUGCUCAGCUGUCAACUCCAAC
...................................(..(...............................).).............................
...(.......(.......................(..(...............................).)......................)...)..
>AANH01011880.1/65628-65527
GGUUACCAAUCAUGUGACCCGUGGGUUUCCCUUUGUCAUCCUUUGCCUGGAGGUGUCUGUAAGGCAGCGGCAGCAAAGGGAGGCUCAGCCAUCACUCACUUC
...................................(..(...............................).).............................
..(........(.......................(..(...............................).)......................).)....
>BX323080.10/77917-77816
CCUCCCUUGUCAUGUGACCUGUGGACUUCCCUUUGUCAUCCUAUGCCUGGAGUAAUAGAGGGGGCUGGGAAGUCAAAGGGACGCUCAGGCGUCAUCAUUCGC
.........(..(................................................................................)).......
>AANH01001880.1/194334-194437
AUCAUCCGGUCAUGUGACUUAUGGCCUUCCCUUUGUCAUCCUAUGCCUGGACUCAUACAAAAGGGGCUGGGAAGGCAAAGGGACGCCCAGUCGUCAUACUAGCA
....................................................(..(.....)).........................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 U(CA(Y)) < 0.001 8.99
AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
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2 (.CN.().C.) < 0.001 4.24
AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
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3 N(U(R)) < 0.001 2.9
AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
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4 (YYNNR) < 0.001 1.56
AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
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5 U(RG(R)) < 0.001 5.1
AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
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ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 U(CA(U)) < 0.001 28.3
AAGW02050442.1/67198-67299
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
UUCACCUGGCCAUGUGACUGGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGUUCUGAGCAGGGCAGGGACAGCAAAGGGGUGCUCAGUCGUCACCCUGCAC
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
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2 (()AGNG) < 0.001 17
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).