D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Hepatitis C virus internal ribosome entry site   (Rfam: RF00061)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(.AGYN.)
C(NU)G
C(NU)R
90.5
100.0
100.0
(.AGYN.)
C(NU)G
C(NU)G

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.9 %
(± 0.101 %)
Decision tree:

5-fold cross-validation: 95.4 %
(± 3.45 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 95.4 %
(± 3.81 %)
of Z77063.1/1-197
Z77063.1/1-197
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
(.((((((((((((.((((((...)))))))))((((((((((((((((.(..))((((((((((((((..((((((....))))))((((((((((((((((((((((((((..))))))))))))))..)))))))))))).((((..)))))))).))))))))))))).)))))).))))))))))))).)))
...................................................................................................1.................................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
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abstract shape: (()((()())()))

Number of sequences
Structure ORBs (out of 42) (%)
1 (.AGYN.)
 38 90.5
>AY190452.1/1-181
UGCAGGCUUCAGGACCCCCAGUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....)........................................................................................................................
>AF041303.1/1-191
CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUUCAACGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGAAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGGGAGUGCC
....................................(....).....................................................................................................................................................
>AY190500.1/1-181
UGCAGCCUCCAGGGCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAAUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....)........................................................................................................................
>D13449.1/1-185
UGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUCCACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAACUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
.........................................................(....)..........................................................................................................................
>AY163831.1/1-177
UCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCUAGGGCGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUAGAAAUUUGGCCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUUGGGUCGCUAAAGGCCUUGUGGUACUGCCUGAUAGGGU
..................................(....).........................................................................................................................................
>L29598.1/1-191
GAGUGUUGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAUGACCGGGUCCUUUCUUGGAUUAAACCCGCUCAAUGCCCGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGU
...............................................................(....)..........................................................................................................................
>AF041311.1/1-191
CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUGGGGUCGCGAAAGGCCUGGUGGUACUACCUGAUAGGGUGCUGGCGAGUGCC
....................................(....).....................................................................................................................................................
>AF506627.1/1-230
AUCCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAAUAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGU
.........................................................................................................................(....).......................................................................................................
>Z77063.1/1-197
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
......................................................................................................................................................................(.....)........................
>AY146052.1/3-208
GCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
...............................................................................(....).........................................................................................................................
>AY145903.1/2-211
UUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACGCGUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
...................................................................................(....).........................................................................................................................
>AF057152.1/1-238
AAAGCGCCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGCGAGAGCCUAUUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCGGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUGACUCCAGAAUUGGGCGUGCCCCCGCAGGAUCACUAGCCGAGUGGUGUUGGGUCGCGAAAGGCCUUGUGGUACGUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)................................................................................................................................................
>D13451.1/2-185
GUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAACUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
........................................................(....)..........................................................................................................................
>U38285.1/1-202
AAGCGCCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGA
........................................................................................(....)............................................................................................................
>AY188114.1/3-196
GAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGACCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCAAGAUCACUAUCCGAGUAAUGUUGGGUCGCGAAAGGCCUUGUGGUACUG
...............................................................(....).............................................................................................................................
>AF134759.1/1-181
UGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGGAGACCGGGUCCUUUCUUGGAACAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....)........................................................................................................................
>Z84276.1/1-250
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUCUCUUGGAAUAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGCCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUCGAGAGU
..................................................................................................(....)..................................................................................................................................................
>AF506639.1/3-232
CCAUGGCGUUAGUGUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAAGACUGGGUCCUUUCUUGGAUAAACCCACUCUAUGCCCGGCCAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGACAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGA
..............................................................................(....)..................................................................................................................................................
>AF041281.1/1-191
CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGAAGACUGGGUCCUUUCUGGGAUAAACCCACUCAAUGCCCGGCCAUUUGGGCGUGCCCCCGAAAGAUUGUUAGCCGAGUAGCGUGGGGUCGCGAAAGGCCUGGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCC
....................................(....).....................................................................................................................................................
>AJ437144.1/1-237
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAACGCUAGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGA
..........................................................................................(....).............................................................................................................................................
>AY434109.1/2-197
UGAGUGUUGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUUCACCGGAAUCGCCGGGACGACCGGGUCCUUUCUUGGAACAAACCCGCUCAAUGCCCGGCAAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGUACUG
................................................................(....)..............................................................................................................................
>AF216795.1/3-205
AUGGCGUUAGUACGAGUGUCGAACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCCCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCCAUGCCUGGGUAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
............................................................................(....).........................................................................................................................
>AF057148.1/1-238
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUACCGAAAGACUGGGUCCUUUCUUGGAUACAACCCACUCAUUGCCCGGUCGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)................................................................................................................................................
>AY311400.1/1-215
UCACGCGGAAAGCGUCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGACGACCGGGUCCUUUCUUGGAACAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGG
.................................................................................................(....)................................................................................................................
>X78867.1/2-193
GGCGUUAGUAUGAGUGUCGAACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAUGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCCGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
..........................................................................(....)................................................................................................................
>Z84266.1/1-249
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGUCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCGUGAUAGGGUGCUCGAGAGU
.................(.....).................................................................................................................................................................................................................................
>X78865.1/2-193
GGCGUUAGUAUGAGUGUUGUACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
..........................................................................(....)................................................................................................................
>AJ006327.1/1-227
GCCAUGGCGUUAGUAUGAGUGUCGCGCAGCCUCCAGGACCCCCCCUCCAGGGAGAGCCAUAGUGGUCUGCGGAGCCGGUGAGUACACCGGAAUUGCCAGGAUGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGC
...............................................................................(....)..............................................................................................................................................
>AY190402.1/3-181
CAGCCCCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAUAAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACCGUUAGCCGAGUAGUGUUGGGUCGCAAAAGGCCUUGUGG
.....................................................(....)........................................................................................................................
>AF506647.1/1-238
AUCCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACCGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
........................................................................................................................(....)................................................................................................................
>AJ006317.1/1-229
CGUGCAGCCUCCAGGCCCCCCUCUAGGGAGCAGCCAUAGUGGUGUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUUGGCGUGCCCCCCGCAAGAUCACUAGCCCAAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCAAGUGCCCCCGGGAGGUCUCGUAA
...........................(.....)...................................................................................................................................................................................................
>AF057155.1/1-236
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGGAUACCGGGUCCUUUCUUGGAUAAACCCGCUCAAUGCCUGGAAAUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUGGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)..............................................................................................................................................
>AY163830.1/1-251
UUCACGCAGAAACCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGGGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGUCAAAGUCGACCGAAUCCUUUGUUUUAUCAAACCCCUCGAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGCACUGUUAGCCGAGUAAUGUUGGGUCCCGUAAAGGCCUUGAGGUACUGCCUGAUAGGGUGCUCGAGA
..................................................................................................(....)...................................................................................................................................................
>AF057147.1/1-240
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUACCGGGAAGACUGGGUCCUUUCUUGGAUACAACCCGCUCAAUGCCUGGACGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)..................................................................................................................................................
>AF077233.1/1-250
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAUCCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCAAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUCGAGAGU
..................................................................................................(....)..................................................................................................................................................
>Z84281.1/1-249
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUACCGGAAAGACUGGGUCCUUUCUUGGAUAAACCCACUCUAUGUCCGGUCAUUUGGGCGUGCCCCCGCAAGACUGUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUCGAGAGU
..................................................................................................(....).................................................................................................................................................
>AY163829.1/1-223
CUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGUCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUUCUUGGAGCAAACCCGCUCCAAUGCCCAGAGAUUUGGGCGAGCCCCACGCGAGAUCGCUAGCCGAGUGAGU
....................................................................................................................(....).....................................................................................................
>AF506666.1/2-232
CCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACCGCUAGCCGAGUAGUGUUGGGUCGC
.......................................................................................................................(....)..........................................................................................................
2 (.AGYN.)
C(NU)G
 33 78.6
>AY190452.1/1-181
UGCAGGCUUCAGGACCCCCAGUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....).................................................................(..)...................................................
>AF216795.1/3-205
AUGGCGUUAGUACGAGUGUCGAACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCCCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCCAUGCCUGGGUAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
............................................................................(....).................................................................(..)....................................................
>AY190500.1/1-181
UGCAGCCUCCAGGGCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAAUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....).................................................................(..)...................................................
>D13449.1/1-185
UGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUCCACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAACUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
.........................................................(....)..................................................................(..)....................................................
>D13451.1/2-185
GUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAACUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
........................................................(....)..................................................................(..)....................................................
>AF041311.1/1-191
CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUGGGGUCGCGAAAGGCCUGGUGGUACUACCUGAUAGGGUGCUGGCGAGUGCC
....................................(....).................................................................(..)................................................................................
>AY190402.1/3-181
CAGCCCCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAUAAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACCGUUAGCCGAGUAGUGUUGGGUCGCAAAAGGCCUUGUGG
.....................................................(....).................................................................(..)...................................................
>AF041281.1/1-191
CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGAAGACUGGGUCCUUUCUGGGAUAAACCCACUCAAUGCCCGGCCAUUUGGGCGUGCCCCCGAAAGAUUGUUAGCCGAGUAGCGUGGGGUCGCGAAAGGCCUGGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCC
....................................(....).................................................................(..)................................................................................
>AY434109.1/2-197
UGAGUGUUGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUUCACCGGAAUCGCCGGGACGACCGGGUCCUUUCUUGGAACAAACCCGCUCAAUGCCCGGCAAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGUACUG
................................................................(....)..................................................................(..)........................................................
>AY188114.1/3-196
GAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGACCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCAAGAUCACUAUCCGAGUAAUGUUGGGUCGCGAAAGGCCUUGUGGUACUG
...............................................................(....).................................................................(..)........................................................
>L29598.1/1-191
GAGUGUUGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAUGACCGGGUCCUUUCUUGGAUUAAACCCGCUCAAUGCCCGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGU
...............................................................(....)..................................................................(..)....................................................
>AF041303.1/1-191
CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUUCAACGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGAAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGGGAGUGCC
....................................(....).................................................................(..)................................................................................
>U38285.1/1-202
AAGCGCCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGA
........................................................................................(....).................................................................(..).......................................
>X78867.1/2-193
GGCGUUAGUAUGAGUGUCGAACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAUGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCCGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
..........................................................................(....).................................................................(..)...........................................
>AY145903.1/2-211
UUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACGCGUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
...................................................................................(....).................................................................(..)....................................................
>AY146052.1/3-208
GCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
...............................................................................(....).................................................................(..)....................................................
>AF134759.1/1-181
UGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGGAGACCGGGUCCUUUCUUGGAACAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....).................................................................(..)...................................................
>AJ006317.1/1-229
CGUGCAGCCUCCAGGCCCCCCUCUAGGGAGCAGCCAUAGUGGUGUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUUGGCGUGCCCCCCGCAAGAUCACUAGCCCAAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCAAGUGCCCCCGGGAGGUCUCGUAA
...........................(.....).........................................................(..)......................................................................................................................................
>X78865.1/2-193
GGCGUUAGUAUGAGUGUUGUACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
..........................................................................(....).................................................................(..)...........................................
>AF057152.1/1-238
AAAGCGCCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGCGAGAGCCUAUUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCGGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUGACUCCAGAAUUGGGCGUGCCCCCGCAGGAUCACUAGCCGAGUGGUGUUGGGUCGCGAAAGGCCUUGUGGUACGUGCCUGAUAGGGUGCUUGCG
........................................................................................(....).................................................................(..)...........................................................................
>AF506627.1/1-230
AUCCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAAUAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGU
.........................................................................................................................(....).................................................................(..)..................................
>AY311400.1/1-215
UCACGCGGAAAGCGUCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGACGACCGGGUCCUUUCUUGGAACAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGG
.................................................................................................(....).................................................................(..)...........................................
>AF057148.1/1-238
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUACCGAAAGACUGGGUCCUUUCUUGGAUACAACCCACUCAUUGCCCGGUCGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)..................................................................(..)..........................................................................
>AJ006327.1/1-227
GCCAUGGCGUUAGUAUGAGUGUCGCGCAGCCUCCAGGACCCCCCCUCCAGGGAGAGCCAUAGUGGUCUGCGGAGCCGGUGAGUACACCGGAAUUGCCAGGAUGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGC
...............................................................................(....).................................................................(..).........................................................................
>AF506666.1/2-232
CCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACCGCUAGCCGAGUAGUGUUGGGUCGC
.......................................................................................................................(....).................................................................(..).....................................
>AF057155.1/1-236
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGGAUACCGGGUCCUUUCUUGGAUAAACCCGCUCAAUGCCUGGAAAUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUGGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)................................................................(..)..........................................................................
>AF506639.1/3-232
CCAUGGCGUUAGUGUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAAGACUGGGUCCUUUCUUGGAUAAACCCACUCUAUGCCCGGCCAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGACAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGA
..............................................................................(....).................................................................(..).............................................................................
>Z77063.1/1-197
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
............................................................................(....).................................................................(..)..............................................
>AJ437144.1/1-237
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAACGCUAGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGA
..........................................................................................(....)................................................................(..).........................................................................
>AF506647.1/1-238
AUCCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACCGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
........................................................................................................................(....).................................................................(..)...........................................
>AF057147.1/1-240
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUACCGGGAAGACUGGGUCCUUUCUUGGAUACAACCCGCUCAAUGCCUGGACGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)...................................................................(..)...........................................................................
>Z84276.1/1-250
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUCUCUUGGAAUAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGCCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUCGAGAGU
..................................................................................................(....).................................................................(..).............................................................................
>AF077233.1/1-250
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAUCCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCAAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUCGAGAGU
..................................................................................................(....).................................................................(..).............................................................................
3 (.AGYN.)
C(NU)G
C(NU)R
 30 71.4
>Z77063.1/1-197
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
............................................................................(....)..............................(..)...............................(..)..............................................
>AJ437144.1/1-237
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAACGCUAGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGA
..........................................................................................(....).............................(..)...............................(..).........................................................................
>X78867.1/2-193
GGCGUUAGUAUGAGUGUCGAACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAUGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCCGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
..........................................................................(....)..............................(..)...............................(..)...........................................
>X78865.1/2-193
GGCGUUAGUAUGAGUGUUGUACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
..........................................................................(....)..............................(..)...............................(..)...........................................
>Z84276.1/1-250
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUCUCUUGGAAUAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGCCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUCGAGAGU
..................................................................................................(....)..............................(..)...............................(..).............................................................................
>AY190500.1/1-181
UGCAGCCUCCAGGGCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAAUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....)..............................(..)...............................(..)...................................................
>AY145903.1/2-211
UUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACGCGUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
...................................................................................(....)..............................(..)...............................(..)....................................................
>AY190452.1/1-181
UGCAGGCUUCAGGACCCCCAGUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....)..............................(..)...............................(..)...................................................
>AF041311.1/1-191
CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUGGGGUCGCGAAAGGCCUGGUGGUACUACCUGAUAGGGUGCUGGCGAGUGCC
....................................(....)..............................(..)...............................(..)................................................................................
>AY146052.1/3-208
GCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
...............................................................................(....)..............................(..)...............................(..)....................................................
>AF134759.1/1-181
UGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGGAGACCGGGUCCUUUCUUGGAACAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....)..............................(..)...............................(..)...................................................
>D13451.1/2-185
GUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAACUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
........................................................(....)..............................(..)................................(..)....................................................
>AF506639.1/3-232
CCAUGGCGUUAGUGUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAAGACUGGGUCCUUUCUUGGAUAAACCCACUCUAUGCCCGGCCAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGACAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGA
..............................................................................(....)..............................(..)...............................(..).............................................................................
>AY188114.1/3-196
GAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGACCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCAAGAUCACUAUCCGAGUAAUGUUGGGUCGCGAAAGGCCUUGUGGUACUG
...............................................................(....)..............................(..)...............................(..)........................................................
>AY311400.1/1-215
UCACGCGGAAAGCGUCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGACGACCGGGUCCUUUCUUGGAACAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGG
.................................................................................................(....)..............................(..)...............................(..)...........................................
>AF506627.1/1-230
AUCCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAAUAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGU
.........................................................................................................................(....)..............................(..)...............................(..)..................................
>AF506647.1/1-238
AUCCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACCGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
........................................................................................................................(....)..............................(..)...............................(..)...........................................
>AY190402.1/3-181
CAGCCCCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAUAAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACCGUUAGCCGAGUAGUGUUGGGUCGCAAAAGGCCUUGUGG
.....................................................(....)..............................(..)...............................(..)...................................................
>L29598.1/1-191
GAGUGUUGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAUGACCGGGUCCUUUCUUGGAUUAAACCCGCUCAAUGCCCGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGU
...............................................................(....)..............................(..)................................(..)....................................................
>AY434109.1/2-197
UGAGUGUUGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUUCACCGGAAUCGCCGGGACGACCGGGUCCUUUCUUGGAACAAACCCGCUCAAUGCCCGGCAAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGUACUG
................................................................(....)..............................(..)................................(..)........................................................
>AF216795.1/3-205
AUGGCGUUAGUACGAGUGUCGAACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCCCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCCAUGCCUGGGUAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
............................................................................(....)..............................(..)...............................(..)....................................................
>U38285.1/1-202
AAGCGCCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGA
........................................................................................(....)..............................(..)...............................(..).......................................
>AJ006327.1/1-227
GCCAUGGCGUUAGUAUGAGUGUCGCGCAGCCUCCAGGACCCCCCCUCCAGGGAGAGCCAUAGUGGUCUGCGGAGCCGGUGAGUACACCGGAAUUGCCAGGAUGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGC
...............................................................................(....)..............................(..)...............................(..).........................................................................
>AF506666.1/2-232
CCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACCGCUAGCCGAGUAGUGUUGGGUCGC
.......................................................................................................................(....)..............................(..)...............................(..).....................................
>AF057152.1/1-238
AAAGCGCCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGCGAGAGCCUAUUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCGGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUGACUCCAGAAUUGGGCGUGCCCCCGCAGGAUCACUAGCCGAGUGGUGUUGGGUCGCGAAAGGCCUUGUGGUACGUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)..............................(..)...............................(..)...........................................................................
>AF077233.1/1-250
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAUCCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCAAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUCGAGAGU
..................................................................................................(....)..............................(..)...............................(..).............................................................................
>D13449.1/1-185
UGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUCCACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAACUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
.........................................................(....)..............................(..)................................(..)....................................................
>AF057155.1/1-236
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGGAUACCGGGUCCUUUCUUGGAUAAACCCGCUCAAUGCCUGGAAAUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUGGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)..............................(..)..............................(..)..........................................................................
>AF057148.1/1-238
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUACCGAAAGACUGGGUCCUUUCUUGGAUACAACCCACUCAUUGCCCGGUCGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....).............................(..).................................(..)..........................................................................
>AF057147.1/1-240
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUACCGGGAAGACUGGGUCCUUUCUUGGAUACAACCCGCUCAAUGCCUGGACGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)..............................(..).................................(..)...........................................................................

>AY190452.1/1-181
UGCAGGCUUCAGGACCCCCAGUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....)........................................................................................................................
.......................................................(....).................................................................(..)...................................................
.......................................................(....)..............................(..)...............................(..)...................................................
>AY190500.1/1-181
UGCAGCCUCCAGGGCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAAUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....)........................................................................................................................
.......................................................(....).................................................................(..)...................................................
.......................................................(....)..............................(..)...............................(..)...................................................
>D13449.1/1-185
UGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUCCACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAACUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
.........................................................(....)..........................................................................................................................
.........................................................(....)..................................................................(..)....................................................
.........................................................(....)..............................(..)................................(..)....................................................
>L29598.1/1-191
GAGUGUUGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAUGACCGGGUCCUUUCUUGGAUUAAACCCGCUCAAUGCCCGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGU
...............................................................(....)..........................................................................................................................
...............................................................(....)..................................................................(..)....................................................
...............................................................(....)..............................(..)................................(..)....................................................
>AF041311.1/1-191
CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUGGGGUCGCGAAAGGCCUGGUGGUACUACCUGAUAGGGUGCUGGCGAGUGCC
....................................(....).....................................................................................................................................................
....................................(....).................................................................(..)................................................................................
....................................(....)..............................(..)...............................(..)................................................................................
>AF506627.1/1-230
AUCCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAAUAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGU
.........................................................................................................................(....).......................................................................................................
.........................................................................................................................(....).................................................................(..)..................................
.........................................................................................................................(....)..............................(..)...............................(..)..................................
>Z77063.1/1-197
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
......................................................................................................................................................................(.....)........................
............................................................................(....).................................................................(..)..............................................
............................................................................(....)..............................(..)...............................(..)..............................................
>AY146052.1/3-208
GCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
...............................................................................(....).........................................................................................................................
...............................................................................(....).................................................................(..)....................................................
...............................................................................(....)..............................(..)...............................(..)....................................................
>AY145903.1/2-211
UUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACGCGUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
...................................................................................(....).........................................................................................................................
...................................................................................(....).................................................................(..)....................................................
...................................................................................(....)..............................(..)...............................(..)....................................................
>AF057152.1/1-238
AAAGCGCCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGCGAGAGCCUAUUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCGGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUGACUCCAGAAUUGGGCGUGCCCCCGCAGGAUCACUAGCCGAGUGGUGUUGGGUCGCGAAAGGCCUUGUGGUACGUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)................................................................................................................................................
........................................................................................(....).................................................................(..)...........................................................................
........................................................................................(....)..............................(..)...............................(..)...........................................................................
>D13451.1/2-185
GUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAACUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
........................................................(....)..........................................................................................................................
........................................................(....)..................................................................(..)....................................................
........................................................(....)..............................(..)................................(..)....................................................
>U38285.1/1-202
AAGCGCCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGA
........................................................................................(....)............................................................................................................
........................................................................................(....).................................................................(..).......................................
........................................................................................(....)..............................(..)...............................(..).......................................
>AY188114.1/3-196
GAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGACCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCAAGAUCACUAUCCGAGUAAUGUUGGGUCGCGAAAGGCCUUGUGGUACUG
...............................................................(....).............................................................................................................................
...............................................................(....).................................................................(..)........................................................
...............................................................(....)..............................(..)...............................(..)........................................................
>AF134759.1/1-181
UGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGGAGACCGGGUCCUUUCUUGGAACAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGG
.......................................................(....)........................................................................................................................
.......................................................(....).................................................................(..)...................................................
.......................................................(....)..............................(..)...............................(..)...................................................
>Z84276.1/1-250
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUCUCUUGGAAUAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGCCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUCGAGAGU
..................................................................................................(....)..................................................................................................................................................
..................................................................................................(....).................................................................(..).............................................................................
..................................................................................................(....)..............................(..)...............................(..).............................................................................
>AF506639.1/3-232
CCAUGGCGUUAGUGUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAAGACUGGGUCCUUUCUUGGAUAAACCCACUCUAUGCCCGGCCAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGACAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGA
..............................................................................(....)..................................................................................................................................................
..............................................................................(....).................................................................(..).............................................................................
..............................................................................(....)..............................(..)...............................(..).............................................................................
>AJ437144.1/1-237
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAACGCUAGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGA
..........................................................................................(....).............................................................................................................................................
..........................................................................................(....)................................................................(..).........................................................................
..........................................................................................(....).............................(..)...............................(..).........................................................................
>AY434109.1/2-197
UGAGUGUUGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUUCACCGGAAUCGCCGGGACGACCGGGUCCUUUCUUGGAACAAACCCGCUCAAUGCCCGGCAAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGUACUG
................................................................(....)..............................................................................................................................
................................................................(....)..................................................................(..)........................................................
................................................................(....)..............................(..)................................(..)........................................................
>AF216795.1/3-205
AUGGCGUUAGUACGAGUGUCGAACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCCCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCCAUGCCUGGGUAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGU
............................................................................(....).........................................................................................................................
............................................................................(....).................................................................(..)....................................................
............................................................................(....)..............................(..)...............................(..)....................................................
>AF057148.1/1-238
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUACCGAAAGACUGGGUCCUUUCUUGGAUACAACCCACUCAUUGCCCGGUCGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGCGUUGGGUUGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)................................................................................................................................................
........................................................................................(....)..................................................................(..)..........................................................................
........................................................................................(....).............................(..).................................(..)..........................................................................
>AY311400.1/1-215
UCACGCGGAAAGCGUCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGACGACCGGGUCCUUUCUUGGAACAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGG
.................................................................................................(....)................................................................................................................
.................................................................................................(....).................................................................(..)...........................................
.................................................................................................(....)..............................(..)...............................(..)...........................................
>X78867.1/2-193
GGCGUUAGUAUGAGUGUCGAACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCGGGAUGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCCGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
..........................................................................(....)................................................................................................................
..........................................................................(....).................................................................(..)...........................................
..........................................................................(....)..............................(..)...............................(..)...........................................
>X78865.1/2-193
GGCGUUAGUAUGAGUGUUGUACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
..........................................................................(....)................................................................................................................
..........................................................................(....).................................................................(..)...........................................
..........................................................................(....)..............................(..)...............................(..)...........................................
>AJ006327.1/1-227
GCCAUGGCGUUAGUAUGAGUGUCGCGCAGCCUCCAGGACCCCCCCUCCAGGGAGAGCCAUAGUGGUCUGCGGAGCCGGUGAGUACACCGGAAUUGCCAGGAUGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGC
...............................................................................(....)..............................................................................................................................................
...............................................................................(....).................................................................(..).........................................................................
...............................................................................(....)..............................(..)...............................(..).........................................................................
>AY190402.1/3-181
CAGCCCCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAUAAACCCGCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACCGUUAGCCGAGUAGUGUUGGGUCGCAAAAGGCCUUGUGG
.....................................................(....)........................................................................................................................
.....................................................(....).................................................................(..)...................................................
.....................................................(....)..............................(..)...............................(..)...................................................
>AF506647.1/1-238
AUCCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACCGCUAGCCGAGUAGUGUUGGGUCGCGAAAGG
........................................................................................................................(....)................................................................................................................
........................................................................................................................(....).................................................................(..)...........................................
........................................................................................................................(....)..............................(..)...............................(..)...........................................
>AF057155.1/1-236
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCCGGGGAUACCGGGUCCUUUCUUGGAUAAACCCGCUCAAUGCCUGGAAAUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUGGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)..............................................................................................................................................
........................................................................................(....)................................................................(..)..........................................................................
........................................................................................(....)..............................(..)..............................(..)..........................................................................
>AF057147.1/1-240
AAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGCCCCCCCCUCCCGCGAGAGCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUACCGGGAAGACUGGGUCCUUUCUUGGAUACAACCCGCUCAAUGCCUGGACGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCG
........................................................................................(....)..................................................................................................................................................
........................................................................................(....)...................................................................(..)...........................................................................
........................................................................................(....)..............................(..).................................(..)...........................................................................
>AF077233.1/1-250
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAUCCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCAAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUCGAGAGU
..................................................................................................(....)..................................................................................................................................................
..................................................................................................(....).................................................................(..).............................................................................
..................................................................................................(....)..............................(..)...............................(..).............................................................................
>AF506666.1/2-232
CCCUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGACCGCUAGCCGAGUAGUGUUGGGUCGC
.......................................................................................................................(....)..........................................................................................................
.......................................................................................................................(....).................................................................(..).....................................
.......................................................................................................................(....)..............................(..)...............................(..).....................................
>AF041303.1/1-191
CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUUCAACGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGAAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGGGAGUGCC
....................................(....).....................................................................................................................................................
....................................(....).................................................................(..)................................................................................
>AF041281.1/1-191
CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGAAGACUGGGUCCUUUCUGGGAUAAACCCACUCAAUGCCCGGCCAUUUGGGCGUGCCCCCGAAAGAUUGUUAGCCGAGUAGCGUGGGGUCGCGAAAGGCCUGGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCC
....................................(....).....................................................................................................................................................
....................................(....).................................................................(..)................................................................................
>AJ006317.1/1-229
CGUGCAGCCUCCAGGCCCCCCUCUAGGGAGCAGCCAUAGUGGUGUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACGGGUCCUUUCUUGGAGCAACCCGCUCAAUACCCAGAAAUUUUGGCGUGCCCCCCGCAAGAUCACUAGCCCAAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCAAGUGCCCCCGGGAGGUCUCGUAA
...........................(.....)...................................................................................................................................................................................................
...........................(.....).........................................................(..)......................................................................................................................................
>AY163831.1/1-177
UCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCUAGGGCGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUAGAAAUUUGGCCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUUGGGUCGCUAAAGGCCUUGUGGUACUGCCUGAUAGGGU
..................................(....).........................................................................................................................................
>Z84266.1/1-249
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCCUCCCGGGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGUCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCGUGAUAGGGUGCUCGAGAGU
.................(.....).................................................................................................................................................................................................................................
>AY163830.1/1-251
UUCACGCAGAAACCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGGGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGUCAAAGUCGACCGAAUCCUUUGUUUUAUCAAACCCCUCGAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGCACUGUUAGCCGAGUAAUGUUGGGUCCCGUAAAGGCCUUGAGGUACUGCCUGAUAGGGUGCUCGAGA
..................................................................................................(....)...................................................................................................................................................
>Z84281.1/1-249
UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUACCGGAAAGACUGGGUCCUUUCUUGGAUAAACCCACUCUAUGUCCGGUCAUUUGGGCGUGCCCCCGCAAGACUGUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUCGAGAGU
..................................................................................................(....).................................................................................................................................................
>AY163829.1/1-223
CUGUGAGGAACUUCUGUCUUCACGCGGAAAGCGUCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUUCUUGGAGCAAACCCGCUCCAAUGCCCAGAGAUUUGGGCGAGCCCCACGCGAGAUCGCUAGCCGAGUGAGU
....................................................................................................................(....).....................................................................................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (.AGYN.) < 0.001 10.3
Z77063.1/1-197
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
...................................................................................................1.................................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
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2 C(NU)G < 0.001 5.52
Z77063.1/1-197
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
...................................................................................................1.................................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
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3 C(NU)R < 0.001 5.28
Z77063.1/1-197
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
...................................................................................................1.................................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
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ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 (AGUN) < 0.001 31.4
Z77063.1/1-197
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
...................................................................................................1.................................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
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2 (()(Y)N(G)) < 0.001 38.3
3 A(GYR)N < 0.001 13.1
Z77063.1/1-197
AUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGCGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
...................................................................................................1.................................................................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.......
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4 ((N)YA)Y 0.00202 2.53
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).