D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

let-7 microRNA precursor (Rfam: RF00027)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

(.NG.().U.)
(NR()U)
(.RNYNY.)
G(U(A))

100.0
100.0
89.1
98.2

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 98.1 %
(± 0.476 %)

Decision tree:

5-fold cross-validation: 91.1 %
(± 2.2 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 92.1 %
(± 2.52 %)

of ACBE01248169.1/7760-7844

ACBE01248169.1/7760-7844

CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA
(((((..(((.((((((((((((((((....(.((((.......))(((..)))))).)))))))))))))))).))).))))).
.........1.........2.........3.........4.........5.........6.........7.........8.....
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abstract shape: `()`

					Number of sequences
	Structure	ORBs			(out of 55)	(%)
1		(.NG.().U.)			53	96.4
>AAPP01015675.1/360249-360318 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGCAACUAAGAAUCGUACUAUACAAUGUGCUAGCUUUCUUUGC .......................(..(................)..)....................... >BX005154.6/63678-63599 GCAGGCUGAGGUAGUUGGUUGUAUGGUUUUGCAUCAUAAUCAGCCUGGAGUUAACUGUACAACCUUCUAGCUUUCCCUGC .......................(...(.........................)..)....................... >BAAE01218263.1/598-683 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUGAUUUUACCCCAUAAGGAGCUAACUAUACAACCUACUGCCUUCCCUGG ...........................(.....(.......................).).......................... >Z70203.2/12451-12379 UCCGGUGAGGUAGUAGGUUGUAUAGUUUGGAAUAUUACCACCGGUGAACUAUGCAAUUUUCUACCUUACCGGA ......................(..(.....................)..)...................... >AP001359.4/114553-114478 CCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUG ...........................(...(...............).).......................... >AF210771.1/1883-1955 UACGGUGAGGUAGUAGGUUGUAUAGUUUAGAAUAUUACUCUCGGUGAACUAUGCAAGUUUCUACCUCACCGAA ...........................(..(............).)........................... >AC094021.2/47340-47253 CCAGGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUAACUGUACAGGCCACUGCCUUGCCAGG ...........................(.....(.......................)...).......................... >AAGD02006482.1/22892-22821 UCUGGUGAGGUAGUAGGUUGUAUAGUUUAGAAUCUUACCUUGGUGAACUAUGCAAGUUUCUACCUCACCAGA ......................(..(....................)..)...................... >AF480570.1/1-79 GUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUC ......................(...(.......................)......)..................... >AAPU01010514.1/89793-89724 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUACUUAUAGACCAUACUAUACAGCGUGCUAGCUUUCUUUGC .......................(..(................)..)....................... >AAPN01341034.1/3404-3318 GCGGGAUGAGGUAGUAGGUUGUGUGGUUUCAGGGGAGUGAUUUUGCCCCAAUCAGAAGAUAACUAUACAGCCUACUGCCUUCCCUGG ...........................(....(.........................).).......................... >AALT01443655.1/3068-3143 CCAGGUUGAGGUAGUGGGUUGUAUAGUUCAGAAUCACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUGCCUUG ...........................(...(...............).).......................... >AAVX01008163.1/128-212 CUGGGUAGAGGUAGUAGGUUGCAUAGUUUGAGGGCAGGGAUUUUGCCCCAAAGGAGAUAACUAUACAACCUGCUGCCUUUCCUGG ...........................(..(........................)..).......................... >CAAE01014991.1/464883-464800 UCAGGGUGAGGUAGUAGGUUGUAUAGUUUGGUGGGUGGGAUUGCCCACUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCCUGA ...........................(...(.......................).).......................... >AAFR03057393.1/4201-4115 GCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUAGUGAUUUUGCCCCAAUCAGAAGAUAACUAUACAACCUACUGCCUUCCCUGA ...........................(.....(.......................)..).......................... >AANI01016295.1/2335-2404 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAUUUAUAGAGCAUACUAUACAGCGUGCUAGCUUUCUUUGC .....................(....(...................).)..................... >AAQA01000457.1/25368-25290 GCUCGAUGAGGUAGUAGGUUGUAUAGUUAUGAGUUGUACCAUAAUCGGAGAAACUGUCCAGCCUGCUAGCUUGCCGUGC ............................(..(...........)......)............................ >AANH01007764.1/36699-36614 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUUAUUUUACCCCAUCGGGAGUUAACUAUACAACCUACUGCCUUUCCUGG .......................(..(.................................)..)...................... >AAYZ01324012.1/2457-2541 ACGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCGGUGAUGUCGCCCCUCAGCAGAUAACUAUACAGCCUACUGCCUUCCCUGA ...........................(....(.......................).).......................... >AAFS01000369.1/71461-71393 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUACUUCAGAUCGUACUAUACAAUGUGCUAGCUUUCUUUGC .....................(....(..................).)..................... >AANG01619101.1/1216-1136 GUGGGAUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCAUACCCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC ...........................(....(...................).).......................... >AAPT01004257.1/151-220 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAUCUAUCUAGCAUACUAUACAGCUUGCUAGCUUUCUUUGC .....................(....(...................).)..................... >AABU01002759.1/2931025-2930956 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAAUUACACAUCAUACUAUACAAUGUGCUAGCUUUCUUUGC .....................(....(...................).)..................... >AAIY01003579.1/1841-1762 GUAGGAUGAGGUAGUAGAUUGUAUAGUUGUAGGUCAUAACCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC ..........................(..(.....................)..)......................... >AC048341.22/3536-3622 CCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGU ...........................(.......(......................).).......................... >AABR05153093.1/1773-1848 CCAGGCUGAGGUAGUAGGUUGUAUAGUUUAGAGUUACAACAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUG ...........................(...(...............).).......................... >CAAE01013731.1/39581-39496 ACGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUGGUGAUAUUGCCCAAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGG ...........................(....(........................).).......................... >AAQB01006449.1/358437-358507 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAAUUAUUCAAUCAUACUAUACAAUGUGCUAGCUUUCUUUGC .....................(....(....................).)..................... >AANN01347783.1/1229-1152 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCCCUGCCCUGCUAUGGGUAACUAUACAAUCUACUGUCUUUCCUGA .......................(.....(.......................).)...................... >AL158152.18/37901-37981 UGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAA ..........................(....(....................).).......................... >AP000962.2/118093-118168 CCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUG .....................(......(........................).).................... >AY866020.1/478-553 CCAGGCUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUG ...........................(...(...............).).......................... >AY866046.1/496-584 CCAGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG ...........................(...(.......................)......).......................... >AAJJ01000960.1/12168-12093 UCUGUUUGAGGUAGUAGGUUGUAUAGUAAGUAUUACACCUAUUGGGAGUGCUGUACAGCCUGCUAACUUUCCCAGA .....................(.....(........................).)..................... >AC147162.2/101359-101275 CUAGGAAGAGGUAGUAGGUUGCAUAGUUUUAGGGCAGAGAUUUUGCCCACAAGGAGUUAACUAUACGACCUGCUGCCUUUCUUAG ..................................(..(....).)........................................ >ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA ..........................(....(......................)...).......................... >AACT01004141.1/13602-13519 AUAACAUGAGGUAGUAGGUUAUGCAGUUUGGCGACAAUAUUUCGUUGCAAAGGAGAUAACUGUGUAACUUGCUGGCUCUUUUAU ...........................(...(.......................).).......................... >AL158152.18/38291-38377 UCAGAGUGAGGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACCCUGUUCAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGA ..........................(..(........................)......)......................... >AL049853.1/18009-17931 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCUCUGCCCUGCUAUGGGAUAACUAUACAAUCUACUGUCUUUCCUGA ...........................(..(...................).).......................... >HM625839.1/191-271 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGAGGGUUUAACCCUUGCUGUCAGAUAACUAUACAACUUACUGUCUUUCCCGA ...........................(..(....................)..).......................... >AC117784.13/47755-47833 UUGGGGUGAGGUAGUAGGUUGUAUGGUUUUGGGCUCUGCCCCGCUCUGCGGUAACUAUACAAUCUACUGUCUUUCCUGA .......................(..(...........................).)...................... >AAGW02075197.1/23048-23132 UCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGCGGUGUCGCCCCUCAGCAGAUAACUAUACAGCCUACUGCCUUCCCCGA ...........................(....(.......................).).......................... >AY866352.1/767-853 UCAGAGUGAGGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACCCUGUUUAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGA ..........................(..(........................)......)......................... >AAKN02054092.1/95811-95899 CUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAAGGAUUUAAGGCCCCAUUAAGAAGAUAACUAUACGACUUACUACUUUCCCUGG ...........................(.......(........................).).......................... >AY866019.1/258-334 CCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCCUGG ......................(...(........................)..)...................... >AAZX01015868.1/1070-988 CCUGGGUGAGGUAGUAGGUUGUAUAGUGGGGAAUGAAAAUUCGUCAUUAUGGAAUCCACUGUACAACUUGCUAACUUUCCCGG ...........................(..(......................)..).......................... >HM625839.1/1002-1087 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUAAUUUUGCCCCAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGA ...........................(.......(.....................).).......................... >AAPY01378069.1/2181-2093 CUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUUGGGAUUGUAGACCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG ...........................(...(.......................)......).......................... >AY866355.1/408-489 GUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAA .......................(........(........................).)...................... >AABS01000138.1/96907-96982 GCAAGUUGAGGUAGUAGGUUAUAUCAGUUGAUUAUAUGAACCAGGAGAUAACUGUAUAGCCCACUAGCUUACUUGC .......................(...(.......................).)...................... >AC018755.3/119936-120011 CCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGGAGGACACCCAAGGAGAUCACUAUACGGCCUCCUAGCUUUCCCCA .......................(....(......................).)...................... >AY866051.1/437-516 UGGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGGCUCUGCCCUGCUAUGGGAUAACUAUACUAUCUACUGUCUUUCCUGA ...........................(..(....................).).......................... >AAZO01005184.1/23361-23435 CAGGGUGAGGUAGUAGACUGUAUAGUAAAGAAUUACAUCAUUUGGAGGUACUGUACAAUCUGCUAACUUUCCCUG ......................(.....(.....................).)......................
2		(.NG.().U.) (NR()U)			40	72.7
>AY866020.1/478-553 CCAGGCUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUG .....(..(..................(...(...............).)..................).)..... >AABR05153093.1/1773-1848 CCAGGCUGAGGUAGUAGGUUGUAUAGUUUAGAGUUACAACAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUG .....(..(..................(...(...............).)..................).)..... >ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA ....(..(..................(....(......................)...)..................).)..... >AANG01619101.1/1216-1136 GUGGGAUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCAUACCCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC .....(..(..................(....(...................).)..................).)..... >AY866046.1/496-584 CCAGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG .....(..(..................(...(.......................)......)..................).)..... >AAYZ01324012.1/2457-2541 ACGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCGGUGAUGUCGCCCCUCAGCAGAUAACUAUACAGCCUACUGCCUUCCCUGA .....(..(..................(....(.......................).)..................).)..... >AC048341.22/3536-3622 CCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGU .....(..(..................(.......(......................).)..................).)..... >AALT01443655.1/3068-3143 CCAGGUUGAGGUAGUGGGUUGUAUAGUUCAGAAUCACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUGCCUUG .....(..(..................(...(...............).)..................).)..... >AAIY01003579.1/1841-1762 GUAGGAUGAGGUAGUAGAUUGUAUAGUUGUAGGUCAUAACCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC .....(..(.................(..(.....................)..).................).)..... >AP001359.4/114553-114478 CCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUG .....(..(..................(...(...............).)..................).)..... >AL049853.1/18009-17931 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCUCUGCCCUGCUAUGGGAUAACUAUACAAUCUACUGUCUUUCCUGA .....(..(..................(..(...................).)..................).)..... >BAAE01218263.1/598-683 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUGAUUUUACCCCAUAAGGAGCUAACUAUACAACCUACUGCCUUCCCUGG .....(..(..................(.....(.......................).)..................).)..... >AY866352.1/767-853 UCAGAGUGAGGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACCCUGUUUAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGA .....(..(.................(..(........................)......).................).)..... >AAGW02075197.1/23048-23132 UCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGCGGUGUCGCCCCUCAGCAGAUAACUAUACAGCCUACUGCCUUCCCCGA .....(..(..................(....(.......................).)..................).)..... >AAKN02054092.1/95811-95899 CUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAAGGAUUUAAGGCCCCAUUAAGAAGAUAACUAUACGACUUACUACUUUCCCUGG .....(..(..................(.......(........................).)..................).)..... >AF480570.1/1-79 GUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUC (..(..................(...(.......................)......)..................).) >AAVX01008163.1/128-212 CUGGGUAGAGGUAGUAGGUUGCAUAGUUUGAGGGCAGGGAUUUUGCCCCAAAGGAGAUAACUAUACAACCUGCUGCCUUUCCUGG .....(..(..................(..(........................)..)..................).)..... >CAAE01014991.1/464883-464800 UCAGGGUGAGGUAGUAGGUUGUAUAGUUUGGUGGGUGGGAUUGCCCACUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCCUGA .....(..(..................(...(.......................).)..................).)..... >AC094021.2/47340-47253 CCAGGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUAACUGUACAGGCCACUGCCUUGCCAGG .....(..(..................(.....(.......................)...)..................).)..... >AANN01347783.1/1229-1152 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCCCUGCCCUGCUAUGGGUAACUAUACAAUCUACUGUCUUUCCUGA .(..(..................(.....(.......................).)..................).). >AAZX01015868.1/1070-988 CCUGGGUGAGGUAGUAGGUUGUAUAGUGGGGAAUGAAAAUUCGUCAUUAUGGAAUCCACUGUACAACUUGCUAACUUUCCCGG .....(..(..................(..(......................)..)..................).)..... >HM625839.1/1002-1087 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUAAUUUUGCCCCAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGA .....(..(..................(.......(.....................).)..................).)..... >AL158152.18/37901-37981 UGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAA ....(..(..................(....(....................).)..................).)..... >AAPY01378069.1/2181-2093 CUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUUGGGAUUGUAGACCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG .....(..(..................(...(.......................)......)..................).)..... >AC018755.3/119936-120011 CCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGGAGGACACCCAAGGAGAUCACUAUACGGCCUCCUAGCUUUCCCCA .....(..(..............(....(......................).)..............).)..... >AAPN01341034.1/3404-3318 GCGGGAUGAGGUAGUAGGUUGUGUGGUUUCAGGGGAGUGAUUUUGCCCCAAUCAGAAGAUAACUAUACAGCCUACUGCCUUCCCUGG .....(..(..................(....(.........................).)..................).)..... >AY866051.1/437-516 UGGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGGCUCUGCCCUGCUAUGGGAUAACUAUACUAUCUACUGUCUUUCCUGA .....(..(..................(..(....................).)..................).)..... >AY866019.1/258-334 CCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCCUGG (..(.......................(....(..............).).......................).). >AL158152.18/38291-38377 UCAGAGUGAGGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACCCUGUUCAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGA .....(..(.................(..(........................)......).................).)..... >AAFR03057393.1/4201-4115 GCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUAGUGAUUUUGCCCCAAUCAGAAGAUAACUAUACAACCUACUGCCUUCCCUGA .....(..(..................(.....(.......................)..)..................).)..... >AC117784.13/47755-47833 UUGGGGUGAGGUAGUAGGUUGUAUGGUUUUGGGCUCUGCCCCGCUCUGCGGUAACUAUACAAUCUACUGUCUUUCCUGA .(..(..................(..(...........................).)..................).). >AAFS01000369.1/71461-71393 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUACUUCAGAUCGUACUAUACAAUGUGCUAGCUUUCUUUGC (..(.................(....(..................).).................).). >AP000962.2/118093-118168 CCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUG (..(.................(......(........................).).................).) >CAAE01013731.1/39581-39496 ACGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUGGUGAUAUUGCCCAAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGG .....(..(..................(....(........................).)..................).)..... >AANH01007764.1/36699-36614 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUUAUUUUACCCCAUCGGGAGUUAACUAUACAACCUACUGCCUUUCCUGG .(..(..................(..(.................................)..)..................).). >AY866355.1/408-489 GUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAA (..(...................(........(........................).)..................).). >AANI01016295.1/2335-2404 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAUUUAUAGAGCAUACUAUACAGCGUGCUAGCUUUCUUUGC (..(..........(..(..................................)..)..........).). >AABS01000138.1/96907-96982 GCAAGUUGAGGUAGUAGGUUAUAUCAGUUGAUUAUAUGAACCAGGAGAUAACUGUAUAGCCCACUAGCUUACUUGC .(..(..................(...(.......................).)..................).). >HM625839.1/191-271 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGAGGGUUUAACCCUUGCUGUCAGAUAACUAUACAACUUACUGUCUUUCCCGA .....(..(..................(..(....................)..)..................).)..... >AACT01004141.1/13602-13519 AUAACAUGAGGUAGUAGGUUAUGCAGUUUGGCGACAAUAUUUCGUUGCAAAGGAGAUAACUGUGUAACUUGCUGGCUCUUUUAU ...(..(....................(...(.......................).)....................).)...
3		(.NG.().U.) (NR()U) (.RNYNY.)			32	58.2
>AC018755.3/119936-120011 CCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGGAGGACACCCAAGGAGAUCACUAUACGGCCUCCUAGCUUUCCCCA .....(..(..............(....(....(.....)...........).)..............).)..... >AAZX01015868.1/1070-988 CCUGGGUGAGGUAGUAGGUUGUAUAGUGGGGAAUGAAAAUUCGUCAUUAUGGAAUCCACUGUACAACUUGCUAACUUUCCCGG .....(..(..................(..(.....(.....)..........)..)..................).)..... >AANN01347783.1/1229-1152 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCCCUGCCCUGCUAUGGGUAACUAUACAAUCUACUGUCUUUCCUGA .(..(..................(.....(...(........)..........).)..................).). >AAFS01000369.1/71461-71393 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUACUUCAGAUCGUACUAUACAAUGUGCUAGCUUUCUUUGC (..(.................(....(..(.....).........).).................).). >AAFR03057393.1/4201-4115 GCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUAGUGAUUUUGCCCCAAUCAGAAGAUAACUAUACAACCUACUGCCUUCCCUGA .....(..(..................(.....(....(......)...........)..)..................).)..... >AY866352.1/767-853 UCAGAGUGAGGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACCCUGUUUAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGA .....(..(.................(..(.....(.......)..........)......).................).)..... >AAIY01003579.1/1841-1762 GUAGGAUGAGGUAGUAGAUUGUAUAGUUGUAGGUCAUAACCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC .....(..(.................(..(.....(......)........)..).................).)..... >CAAE01014991.1/464883-464800 UCAGGGUGAGGUAGUAGGUUGUAUAGUUUGGUGGGUGGGAUUGCCCACUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCCUGA .....(..(..................(...(.....(......)..........).)..................).)..... >AAPY01378069.1/2181-2093 CUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUUGGGAUUGUAGACCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG .....(..(..................(...(....(.......)..........)......)..................).)..... >AACT01004141.1/13602-13519 AUAACAUGAGGUAGUAGGUUAUGCAGUUUGGCGACAAUAUUUCGUUGCAAAGGAGAUAACUGUGUAACUUGCUGGCUCUUUUAU ...(..(....................(...(.....(.....)...........).)....................).)... >AL049853.1/18009-17931 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCUCUGCCCUGCUAUGGGAUAACUAUACAAUCUACUGUCUUUCCUGA .....(..(..................(..(..(........).......).)..................).)..... >AAYZ01324012.1/2457-2541 ACGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCGGUGAUGUCGCCCCUCAGCAGAUAACUAUACAGCCUACUGCCUUCCCUGA .....(..(..................(....(....(......)...........).)..................).)..... >AY866046.1/496-584 CCAGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG .....(..(..................(...(.....(.....)...........)......)..................).)..... >AANG01619101.1/1216-1136 GUGGGAUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCAUACCCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC .....(..(..................(....(....(.....)........).)..................).)..... >AF480570.1/1-79 GUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUC (..(..................(...(.....(.....)...........)......)..................).) >AC094021.2/47340-47253 CCAGGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUAACUGUACAGGCCACUGCCUUGCCAGG .....(..(..................(.....(.......(.......).......)...)..................).)..... >AY866051.1/437-516 UGGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGGCUCUGCCCUGCUAUGGGAUAACUAUACUAUCUACUGUCUUUCCUGA .....(..(..................(..(.(......)...........).)..................).)..... >AL158152.18/38291-38377 UCAGAGUGAGGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACCCUGUUCAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGA .....(..(.................(..(.....(.......)..........)......).................).)..... >ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA ....(..(..................(....(....(.....)...........)...)..................).)..... >AC048341.22/3536-3622 CCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGU .....(..(..................(.......(.....(.....)..........).)..................).)..... >AY866355.1/408-489 GUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAA (..(...................(........(.....(........).........).)..................).). >HM625839.1/191-271 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGAGGGUUUAACCCUUGCUGUCAGAUAACUAUACAACUUACUGUCUUUCCCGA .....(..(..................(..(.....(.....)........)..)..................).)..... >CAAE01013731.1/39581-39496 ACGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUGGUGAUAUUGCCCAAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGG .....(..(..................(....(.....(.......)..........).)..................).)..... >AAVX01008163.1/128-212 CUGGGUAGAGGUAGUAGGUUGCAUAGUUUGAGGGCAGGGAUUUUGCCCCAAAGGAGAUAACUAUACAACCUGCUGCCUUUCCUGG .....(..(..................(..(.....(......)...........)..)..................).)..... >AAPN01341034.1/3404-3318 GCGGGAUGAGGUAGUAGGUUGUGUGGUUUCAGGGGAGUGAUUUUGCCCCAAUCAGAAGAUAACUAUACAGCCUACUGCCUUCCCUGG .....(..(..................(....(.....(.......)...........).)..................).)..... >AAGW02075197.1/23048-23132 UCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGCGGUGUCGCCCCUCAGCAGAUAACUAUACAGCCUACUGCCUUCCCCGA .....(..(..................(....(....(......)...........).)..................).)..... >BAAE01218263.1/598-683 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUGAUUUUACCCCAUAAGGAGCUAACUAUACAACCUACUGCCUUCCCUGG .....(..(..................(.....(....(......)...........).)..................).)..... >AP000962.2/118093-118168 CCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUG (..(.................(......(.....(.......)..........).).................).) >HM625839.1/1002-1087 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUAAUUUUGCCCCAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGA .....(..(..................(.......(..(......)...........).)..................).)..... >AANH01007764.1/36699-36614 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUUAUUUUACCCCAUCGGGAGUUAACUAUACAACCUACUGCCUUUCCUGG .(..(..................(..(.........(..........)............)..)..................).). >AC117784.13/47755-47833 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4		(.NG.().U.) (NR()U) (.RNYNY.) G(U(A))			20	36.4
>AC117784.13/47755-47833 UUGGGGUGAGGUAGUAGGUUGUAUGGUUUUGGGCUCUGCCCCGCUCUGCGGUAACUAUACAAUCUACUGUCUUUCCUGA .(..(.....(.(..........(..(......(........)...........).)..........).).....).). >AANN01347783.1/1229-1152 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCCCUGCCCUGCUAUGGGUAACUAUACAAUCUACUGUCUUUCCUGA .(..(.....(.(..........(.....(...(........)..........).)..........).).....).). >ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA ....(..(.(.(..............(....(....(.....)...........)...)..............).).).)..... >AAFR03057393.1/4201-4115 GCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUAGUGAUUUUGCCCCAAUCAGAAGAUAACUAUACAACCUACUGCCUUCCCUGA .....(..(.(.(..............(.....(....(......)...........)..)..............).).).)..... >AC094021.2/47340-47253 CCAGGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUAACUGUACAGGCCACUGCCUUGCCAGG .....(..(.(.(..............(.....(.......(.......).......)...)..............).).).)..... >AC018755.3/119936-120011 CCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGGAGGACACCCAAGGAGAUCACUAUACGGCCUCCUAGCUUUCCCCA .....(..(.(.(..........(....(....(.....)...........).)..........).).).)..... >BAAE01218263.1/598-683 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUGAUUUUACCCCAUAAGGAGCUAACUAUACAACCUACUGCCUUCCCUGG .....(..(.(.(..............(.....(....(......)...........).)..............).).).)..... >CAAE01013731.1/39581-39496 ACGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUGGUGAUAUUGCCCAAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGG .....(..(.(.(..............(....(.....(.......)..........).)..............).).).)..... >AAZX01015868.1/1070-988 CCUGGGUGAGGUAGUAGGUUGUAUAGUGGGGAAUGAAAAUUCGUCAUUAUGGAAUCCACUGUACAACUUGCUAACUUUCCCGG .....(..(.(.(..............(..(.....(.....)..........)..)..............).).).)..... >AAPN01341034.1/3404-3318 GCGGGAUGAGGUAGUAGGUUGUGUGGUUUCAGGGGAGUGAUUUUGCCCCAAUCAGAAGAUAACUAUACAGCCUACUGCCUUCCCUGG .....(..(.(.(..............(....(.....(.......)...........).)..............).).).)..... >AC048341.22/3536-3622 CCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGU .....(..(.(.(..............(.......(.....(.....)..........).)..............).).).)..... >AAPY01378069.1/2181-2093 CUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUUGGGAUUGUAGACCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG .....(..(.(.(..............(...(....(.......)..........)......)..............).).).)..... >AL049853.1/18009-17931 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCUCUGCCCUGCUAUGGGAUAACUAUACAAUCUACUGUCUUUCCUGA .....(..(.(.(..............(..(..(........).......).)..............).).).)..... >AAGW02075197.1/23048-23132 UCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGCGGUGUCGCCCCUCAGCAGAUAACUAUACAGCCUACUGCCUUCCCCGA .....(..(.(.(..............(....(....(......)...........).)..............).).).)..... >AAYZ01324012.1/2457-2541 ACGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCGGUGAUGUCGCCCCUCAGCAGAUAACUAUACAGCCUACUGCCUUCCCUGA .....(..(.(.(..............(....(....(......)...........).)..............).).).)..... >AACT01004141.1/13602-13519 AUAACAUGAGGUAGUAGGUUAUGCAGUUUGGCGACAAUAUUUCGUUGCAAAGGAGAUAACUGUGUAACUUGCUGGCUCUUUUAU ...(..(...(.(..............(...(.....(.....)...........).)..............).)...).)... >AY866046.1/496-584 CCAGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG .....(..(.(.(..............(...(.....(.....)...........)......)..............).).).)..... >HM625839.1/191-271 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGAGGGUUUAACCCUUGCUGUCAGAUAACUAUACAACUUACUGUCUUUCCCGA .....(..(.(.(..............(..(.....(.....)........)..)..............).).).)..... >CAAE01014991.1/464883-464800 UCAGGGUGAGGUAGUAGGUUGUAUAGUUUGGUGGGUGGGAUUGCCCACUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCCUGA .....(..(.(.(..............(...(.....(......)..........).)..............).).).)..... >AANG01619101.1/1216-1136 GUGGGAUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCAUACCCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC .....(..(.(.(..............(....(....(.....)........).)..............).).).).....

>BAAE01218263.1/598-683 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUGAUUUUACCCCAUAAGGAGCUAACUAUACAACCUACUGCCUUCCCUGG ...........................(.....(.......................).).......................... .....(..(..................(.....(.......................).)..................).)..... .....(..(..................(.....(....(......)...........).)..................).)..... .....(..(.(.(..............(.....(....(......)...........).)..............).).).)..... >AC094021.2/47340-47253 CCAGGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUAACUGUACAGGCCACUGCCUUGCCAGG ...........................(.....(.......................)...).......................... .....(..(..................(.....(.......................)...)..................).)..... .....(..(..................(.....(.......(.......).......)...)..................).)..... .....(..(.(.(..............(.....(.......(.......).......)...)..............).).).)..... >AAPN01341034.1/3404-3318 GCGGGAUGAGGUAGUAGGUUGUGUGGUUUCAGGGGAGUGAUUUUGCCCCAAUCAGAAGAUAACUAUACAGCCUACUGCCUUCCCUGG ...........................(....(.........................).).......................... .....(..(..................(....(.........................).)..................).)..... .....(..(..................(....(.....(.......)...........).)..................).)..... .....(..(.(.(..............(....(.....(.......)...........).)..............).).).)..... >CAAE01014991.1/464883-464800 UCAGGGUGAGGUAGUAGGUUGUAUAGUUUGGUGGGUGGGAUUGCCCACUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCCUGA ...........................(...(.......................).).......................... .....(..(..................(...(.......................).)..................).)..... .....(..(..................(...(.....(......)..........).)..................).)..... .....(..(.(.(..............(...(.....(......)..........).)..............).).).)..... >AAFR03057393.1/4201-4115 GCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUAGUGAUUUUGCCCCAAUCAGAAGAUAACUAUACAACCUACUGCCUUCCCUGA ...........................(.....(.......................)..).......................... .....(..(..................(.....(.......................)..)..................).)..... .....(..(..................(.....(....(......)...........)..)..................).)..... .....(..(.(.(..............(.....(....(......)...........)..)..............).).).)..... >AAYZ01324012.1/2457-2541 ACGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCGGUGAUGUCGCCCCUCAGCAGAUAACUAUACAGCCUACUGCCUUCCCUGA ...........................(....(.......................).).......................... .....(..(..................(....(.......................).)..................).)..... .....(..(..................(....(....(......)...........).)..................).)..... .....(..(.(.(..............(....(....(......)...........).)..............).).).)..... >AANG01619101.1/1216-1136 GUGGGAUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCAUACCCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC ...........................(....(...................).).......................... .....(..(..................(....(...................).)..................).)..... .....(..(..................(....(....(.....)........).)..................).)..... .....(..(.(.(..............(....(....(.....)........).)..............).).).)..... >AC048341.22/3536-3622 CCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGU ...........................(.......(......................).).......................... .....(..(..................(.......(......................).)..................).)..... .....(..(..................(.......(.....(.....)..........).)..................).)..... .....(..(.(.(..............(.......(.....(.....)..........).)..............).).).)..... >CAAE01013731.1/39581-39496 ACGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUGGUGAUAUUGCCCAAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGG ...........................(....(........................).).......................... .....(..(..................(....(........................).)..................).)..... .....(..(..................(....(.....(.......)..........).)..................).)..... .....(..(.(.(..............(....(.....(.......)..........).)..............).).).)..... >AANN01347783.1/1229-1152 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCCCUGCCCUGCUAUGGGUAACUAUACAAUCUACUGUCUUUCCUGA .......................(.....(.......................).)...................... .(..(..................(.....(.......................).)..................).). .(..(..................(.....(...(........)..........).)..................).). .(..(.....(.(..........(.....(...(........)..........).)..........).).....).). >AY866046.1/496-584 CCAGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG ...........................(...(.......................)......).......................... .....(..(..................(...(.......................)......)..................).)..... .....(..(..................(...(.....(.....)...........)......)..................).)..... .....(..(.(.(..............(...(.....(.....)...........)......)..............).).).)..... >ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA ..........................(....(......................)...).......................... ....(..(..................(....(......................)...)..................).)..... ....(..(..................(....(....(.....)...........)...)..................).)..... ....(..(.(.(..............(....(....(.....)...........)...)..............).).).)..... >AACT01004141.1/13602-13519 AUAACAUGAGGUAGUAGGUUAUGCAGUUUGGCGACAAUAUUUCGUUGCAAAGGAGAUAACUGUGUAACUUGCUGGCUCUUUUAU ...........................(...(.......................).).......................... ...(..(....................(...(.......................).)....................).)... ...(..(....................(...(.....(.....)...........).)....................).)... ...(..(...(.(..............(...(.....(.....)...........).)..............).)...).)... >AL049853.1/18009-17931 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCUCUGCCCUGCUAUGGGAUAACUAUACAAUCUACUGUCUUUCCUGA ...........................(..(...................).).......................... .....(..(..................(..(...................).)..................).)..... .....(..(..................(..(..(........).......).)..................).)..... .....(..(.(.(..............(..(..(........).......).)..............).).).)..... >HM625839.1/191-271 UUGGGGUGAGGUAGUAGGUUGUAUAGUUUGAGGGUUUAACCCUUGCUGUCAGAUAACUAUACAACUUACUGUCUUUCCCGA ...........................(..(....................)..).......................... .....(..(..................(..(....................)..)..................).)..... .....(..(..................(..(.....(.....)........)..)..................).)..... .....(..(.(.(..............(..(.....(.....)........)..)..............).).).)..... >AC117784.13/47755-47833 UUGGGGUGAGGUAGUAGGUUGUAUGGUUUUGGGCUCUGCCCCGCUCUGCGGUAACUAUACAAUCUACUGUCUUUCCUGA .......................(..(...........................).)...................... .(..(..................(..(...........................).)..................).). .(..(..................(..(......(........)...........).)..................).). .(..(.....(.(..........(..(......(........)...........).)..........).).....).). >AAGW02075197.1/23048-23132 UCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGCGGUGUCGCCCCUCAGCAGAUAACUAUACAGCCUACUGCCUUCCCCGA ...........................(....(.......................).).......................... .....(..(..................(....(.......................).)..................).)..... .....(..(..................(....(....(......)...........).)..................).)..... .....(..(.(.(..............(....(....(......)...........).)..............).).).)..... >AAZX01015868.1/1070-988 CCUGGGUGAGGUAGUAGGUUGUAUAGUGGGGAAUGAAAAUUCGUCAUUAUGGAAUCCACUGUACAACUUGCUAACUUUCCCGG ...........................(..(......................)..).......................... .....(..(..................(..(......................)..)..................).)..... .....(..(..................(..(.....(.....)..........)..)..................).)..... .....(..(.(.(..............(..(.....(.....)..........)..)..............).).).)..... >AAPY01378069.1/2181-2093 CUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUUGGGAUUGUAGACCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUCCCUGG ...........................(...(.......................)......).......................... .....(..(..................(...(.......................)......)..................).)..... .....(..(..................(...(....(.......)..........)......)..................).)..... .....(..(.(.(..............(...(....(.......)..........)......)..............).).).)..... >AC018755.3/119936-120011 CCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGGAGGACACCCAAGGAGAUCACUAUACGGCCUCCUAGCUUUCCCCA .......................(....(......................).)...................... .....(..(..............(....(......................).)..............).)..... .....(..(..............(....(....(.....)...........).)..............).)..... .....(..(.(.(..........(....(....(.....)...........).)..........).).).)..... >AF480570.1/1-79 GUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUC ......................(...(.......................)......)..................... (..(..................(...(.......................)......)..................).) (..(..................(...(.....(.....)...........)......)..................).) >AAVX01008163.1/128-212 CUGGGUAGAGGUAGUAGGUUGCAUAGUUUGAGGGCAGGGAUUUUGCCCCAAAGGAGAUAACUAUACAACCUGCUGCCUUUCCUGG ...........................(..(........................)..).......................... .....(..(..................(..(........................)..)..................).)..... .....(..(..................(..(.....(......)...........)..)..................).)..... >AANH01007764.1/36699-36614 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUUAUUUUACCCCAUCGGGAGUUAACUAUACAACCUACUGCCUUUCCUGG .......................(..(.................................)..)...................... .(..(..................(..(.................................)..)..................).). .(..(..................(..(.........(..........)............)..)..................).). >AAFS01000369.1/71461-71393 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUACUUCAGAUCGUACUAUACAAUGUGCUAGCUUUCUUUGC .....................(....(..................).)..................... (..(.................(....(..................).).................).). (..(.................(....(..(.....).........).).................).). >AAIY01003579.1/1841-1762 GUAGGAUGAGGUAGUAGAUUGUAUAGUUGUAGGUCAUAACCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCAC ..........................(..(.....................)..)......................... .....(..(.................(..(.....................)..).................).)..... .....(..(.................(..(.....(......)........)..).................).)..... >AL158152.18/37901-37981 UGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAA ..........................(....(....................).).......................... ....(..(..................(....(....................).)..................).)..... ....(..(..................(....(.....(........).....).)..................).)..... >AP000962.2/118093-118168 CCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUG .....................(......(........................).).................... (..(.................(......(........................).).................).) (..(.................(......(.....(.......)..........).).................).) >AL158152.18/38291-38377 UCAGAGUGAGGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACCCUGUUCAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGA ..........................(..(........................)......)......................... .....(..(.................(..(........................)......).................).)..... .....(..(.................(..(.....(.......)..........)......).................).)..... >AY866352.1/767-853 UCAGAGUGAGGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACCCUGUUUAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGA ..........................(..(........................)......)......................... .....(..(.................(..(........................)......).................).)..... .....(..(.................(..(.....(.......)..........)......).................).)..... >HM625839.1/1002-1087 ACAGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUUGUAAUUUUGCCCCAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGA ...........................(.......(.....................).).......................... .....(..(..................(.......(.....................).)..................).)..... .....(..(..................(.......(..(......)...........).)..................).)..... >AY866355.1/408-489 GUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAA .......................(........(........................).)...................... (..(...................(........(........................).)..................).). (..(...................(........(.....(........).........).)..................).). >AY866051.1/437-516 UGGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGGCUCUGCCCUGCUAUGGGAUAACUAUACUAUCUACUGUCUUUCCUGA ...........................(..(....................).).......................... .....(..(..................(..(....................).)..................).)..... .....(..(..................(..(.(......)...........).)..................).)..... >AP001359.4/114553-114478 CCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUG ...........................(...(...............).).......................... .....(..(..................(...(...............).)..................).)..... >AALT01443655.1/3068-3143 CCAGGUUGAGGUAGUGGGUUGUAUAGUUCAGAAUCACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUGCCUUG ...........................(...(...............).).......................... .....(..(..................(...(...............).)..................).)..... >AANI01016295.1/2335-2404 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAUUUAUAGAGCAUACUAUACAGCGUGCUAGCUUUCUUUGC .....................(....(...................).)..................... (..(..........(..(..................................)..)..........).). >AABR05153093.1/1773-1848 CCAGGCUGAGGUAGUAGGUUGUAUAGUUUAGAGUUACAACAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUG ...........................(...(...............).).......................... .....(..(..................(...(...............).)..................).)..... >AY866020.1/478-553 CCAGGCUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUG ...........................(...(...............).).......................... .....(..(..................(...(...............).)..................).)..... >AAKN02054092.1/95811-95899 CUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAAGGAUUUAAGGCCCCAUUAAGAAGAUAACUAUACGACUUACUACUUUCCCUGG ...........................(.......(........................).).......................... .....(..(..................(.......(........................).)..................).)..... >AY866019.1/258-334 CCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCCUGG ......................(...(........................)..)...................... (..(.......................(....(..............).).......................).). >AABS01000138.1/96907-96982 GCAAGUUGAGGUAGUAGGUUAUAUCAGUUGAUUAUAUGAACCAGGAGAUAACUGUAUAGCCCACUAGCUUACUUGC .......................(...(.......................).)...................... .(..(..................(...(.......................).)..................).). >AAPP01015675.1/360249-360318 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGCAACUAAGAAUCGUACUAUACAAUGUGCUAGCUUUCUUUGC .......................(..(................)..)....................... >BX005154.6/63678-63599 GCAGGCUGAGGUAGUUGGUUGUAUGGUUUUGCAUCAUAAUCAGCCUGGAGUUAACUGUACAACCUUCUAGCUUUCCCUGC .......................(...(.........................)..)....................... >Z70203.2/12451-12379 UCCGGUGAGGUAGUAGGUUGUAUAGUUUGGAAUAUUACCACCGGUGAACUAUGCAAUUUUCUACCUUACCGGA ......................(..(.....................)..)...................... >AF210771.1/1883-1955 UACGGUGAGGUAGUAGGUUGUAUAGUUUAGAAUAUUACUCUCGGUGAACUAUGCAAGUUUCUACCUCACCGAA ...........................(..(............).)........................... >AAGD02006482.1/22892-22821 UCUGGUGAGGUAGUAGGUUGUAUAGUUUAGAAUCUUACCUUGGUGAACUAUGCAAGUUUCUACCUCACCAGA ......................(..(....................)..)...................... >AAPU01010514.1/89793-89724 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUACUUAUAGACCAUACUAUACAGCGUGCUAGCUUUCUUUGC .......................(..(................)..)....................... >AAQA01000457.1/25368-25290 GCUCGAUGAGGUAGUAGGUUGUAUAGUUAUGAGUUGUACCAUAAUCGGAGAAACUGUCCAGCCUGCUAGCUUGCCGUGC ............................(..(...........)......)............................ >AAPT01004257.1/151-220 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAUCUAUCUAGCAUACUAUACAGCUUGCUAGCUUUCUUUGC .....................(....(...................).)..................... >AABU01002759.1/2931025-2930956 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAAUUACACAUCAUACUAUACAAUGUGCUAGCUUUCUUUGC .....................(....(...................).)..................... >AAQB01006449.1/358437-358507 GCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAAUUAUUCAAUCAUACUAUACAAUGUGCUAGCUUUCUUUGC .....................(....(....................).)..................... >AAJJ01000960.1/12168-12093 UCUGUUUGAGGUAGUAGGUUGUAUAGUAAGUAUUACACCUAUUGGGAGUGCUGUACAGCCUGCUAACUUUCCCAGA .....................(.....(........................).)..................... >AC147162.2/101359-101275 CUAGGAAGAGGUAGUAGGUUGCAUAGUUUUAGGGCAGAGAUUUUGCCCACAAGGAGUUAACUAUACGACCUGCUGCCUUUCUUAG ..................................(..(....).)........................................ >AAZO01005184.1/23361-23435 CAGGGUGAGGUAGUAGACUGUAUAGUAAAGAAUUACAUCAUUUGGAGGUACUGUACAAUCUGCUAACUUUCCCUG ......................(.....(.....................).)......................

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	(.NG.().U.)			< 0.001		7.4

ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
2	(NR()U)			< 0.001		9.9

ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
3	G(U(A))			< 0.001		3.45

ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
4	(.RNYNY.)			< 0.001		1.71

ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	(.NG.().U.)			< 0.001		7.4

ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
2	G(U(A))			< 0.001		3.45

ACBE01248169.1/7760-7844 CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA CGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGA .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).