D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-27   (Rfam: RF00644)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(GNNY())
(GNNN())
(.N.)
((U)U)C
96.9
100.0
100.0
96.9

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.5 %
(± 0.11 %)
Decision tree:

5-fold cross-validation: 81.8 %
(± 12.4 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 86.5 %
(± 6.63 %)
of AY866333.1/592-673
AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
((....(.((.((((.(((((((((((.(((((((....((((...)))..))))))))))))))))))).)))))))..))
.........1.........2.........3.........4.........5.........6.........7.........8..
1234567890123456789012345678901234567890123456789012345678901234567890123456789012

abstract shape: ()

Number of sequences
Structure ORBs (out of 32) (%)
1 (GNNY())
 30 93.8
>AAKN02038501.1/44047-43965
UCUAACGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGGG
.......................(....(...............................)..)...................
>AAPN01322484.1/470-549
GGUCCGGCGGAGCAGGGCUUAGCUGGCCUGUGAACAGUUAGUUCCCUGCGUGUUCACAGUGGCUAAGUUCCGCCCCUCCA
.......................(....(............................)..)...................
>CAAE01015023.1/589695-589777
UCCAGCCAGGCACAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUUCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAG
.......................(....(...............................)..)...................
>AF480561.1/2-79
CUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
...............................(....(............))...........................
>BAAF04073622.1/5313-5395
UGGGCUCAGAUGCAGGACUUAGUUCAUUGGUGAGCAUUGAGCCACACAGGAAUUGUUCACAGUGGCUAAGUUCAGUACCUGAC
.....................................(....(.......))...............................
>CR847548.8/136623-136702
UUCUAGCAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAACUCUUUGUUCACAGUGGCUAAGUUCUGCAUCUGAG
.......................(....(............................)..)...................
>CAAE01012021.1/28143-28225
UUGAGAGAGGGGCAGGACUUGGCUCGCUCCGUGAACAGUUCGGUCAGUGUGAGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
........................(....(.............................).).....................
>CAAB02004947.1/150354-150272
UUUCUAAAGACACAGGACUUAGCUCAUUAGUGAGCAUUGAACCCAACACAGAUUGUUCACAGUGGCUAAGUUCAGUGUCUGAC
.....................................(....(........))..............................
>AANN01357153.1/1239-1159
CGGCCUGGGGAGCAGGGCUUAGCUGCUGGUGAACAGGGUGUCACCGAGUCUUGUUCACAGUGGCUAAGUUCCGCCCCCCUC
..................................(....(.........).).............................
>AAGV020400005.1/5570-5488
UCUGACAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGGUUUCCACCUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
.......................(....(...............................)..)...................
>AANN01293679.1/8845-8763
UCUGAUGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGACUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
.......................(....(...............................)..)...................
>AANH01005391.1/487407-487325
UUUCUGAAGAUGCAGAAUUUAGCUCAUUAGUGAGCAUUGAACCAAACAGGAAUUGUUCACAGUGGCUAAGUUCAGUGUCUGAC
.....................................(....(......))................................
>AAFR03052006.1/45216-45298
UGGCUUGAGGAGCAGGACUUAGCUGCCUUGUGAACAGAGUCAGCAUCAUAUUGUGUUCACAGUGGCUAAGUUCCGCUCCCCUU
.......................(....(...............................)..)...................
>BX664751.9/57144-57062
UUUCGUGAGGUGCAGGACUUAGCUCACUCUGUGAACAGAUCUCGGAUAUCCUAUGUUCACAGUGGCUAAGUUCCGCUCCUCUG
....................(....(......................................).)................
>BAAF04082680.1/4929-4846
UCGCUAAAGGCACAGAGCUUAGCUAAUUGGUGAGCAUUGAUCCCUGCUGUGUGUUGUUCACAGUGGCUAAGUUCAGUGCCGGAG
.....................................(....(.......).)...............................
>AAWZ02024153.1/17341-17260
GAUGACAAGCCGUAGGGCUUAGCCCACCUGUGAACAGCAUUGGAUUCAGCCAUGUUCACAGUGGCUAAGUUCCGCUGCUUGG
..............................(....(...................).)........................
>BAAF04052671.1/6292-6371
UCUGGUCAGGCGUGGAACUUAGUUGACUUCUGAACAGAGUCUUUCAAGCGUGUUCACAGUGACUAAGUUCUUCUCUCGAG
.......................(....(............................)..)...................
>BAAF04071179.1/1519-1598
GCUGUGCGGCAGCAGGACUUAGCCCACAUGUGAACAGUGAGUGUAUGCCAUGUUCACAGUGGUUAAGUUCUGCCGCCACA
.....................................(....(.....))..............................
>CU855875.13/5510-5593
UCGCUCACGGCGCAGAGCUUAGCUAAUCGGUGAGCAUUGAUCCCUUAAGAAAACUGUUCACAGUGGCUAAGUUCAGUGUCUGGA
.....................................(....(........))...............................
>AAPY01721327.1/686-605
GGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGCGUCCACACCAAGCUGUGCUCACAGUGGCUACGUUCUGUCCUCCAG
..................................(....(...........)).............................
>CT027840.6/2845-2927
UCUGAGCGGGUGCAGAGCUUGGCUGAUUGGUGAACGUGCAUGGCUUGUGUUUUUGUUCACAGUGGCUAAGUUCUUCACCCGAA
.......................(....(...............................)..)...................
>AC187115.2/53333-53251
UCUGGUGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGUUUCCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
.......................(....(..............................)...)...................
>AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
..................................(....(...........)).............................
>AY866326.1/455-536
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUUCACUCCAAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
.......................(....(.............................)...)...................
>AAHX01097732.1/7669-7751
UGGCCUGUGGAGCAGGGCUUAGCUGCUUGUGAGCAAGGUCUACAGCAAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGG
...................................(....(...........)).............................
>AAWR02041732.1/2484-2565
UGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCGAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCGG
...................................(....(.........))..............................
>BAAE01159437.1/1557-1475
UUGGUGGAGGUGAAGGGCUUAGCUCGCUCUGUGAACAGUUCAGUGAAAACUCGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
........................(....(..............................)).....................
>AANH01005378.1/81241-81159
UUGACGGAGGGGCAGGACUUAGCUCGCUCCGUGAACAGUCCAGUGAAAGCCUGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
........................(....(..............................)).....................
>AAPN01152921.1/1247-1165
UCUGUCGCGGCGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGCUGGACUCUUUGUUCACAGUGGCUAAGUUCUGCGCCCGCA
.......................(....(...............................)..)...................
>AAFC03049555.1/15605-15685
UGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGUCCACAUCAAAUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
..................................(....(............))...........................
2 (GNNY())
(GNNN())
 28 87.5
>BAAF04073622.1/5313-5395
UGGGCUCAGAUGCAGGACUUAGUUCAUUGGUGAGCAUUGAGCCACACAGGAAUUGUUCACAGUGGCUAAGUUCAGUACCUGAC
.(....(..............................(....(......)).............................)).
>CU855875.13/5510-5593
UCGCUCACGGCGCAGAGCUUAGCUAAUCGGUGAGCAUUGAUCCCUUAAGAAAACUGUUCACAGUGGCUAAGUUCAGUGUCUGGA
.......(....(........................(....(........))......................).)......
>AAWR02041732.1/2484-2565
UGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCGAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCGG
.(....(.............................(....(.......))...........................))..
>AANH01005391.1/487407-487325
UUUCUGAAGAUGCAGAAUUUAGCUCAUUAGUGAGCAUUGAACCAAACAGGAAUUGUUCACAGUGGCUAAGUUCAGUGUCUGAC
.......(....(........................(....(......)).......................).)......
>AAKN02038501.1/44047-43965
UCUAACGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGGG
.......................(....(........(....(.....))............))...................
>CT027840.6/2845-2927
UCUGAGCGGGUGCAGAGCUUGGCUGAUUGGUGAACGUGCAUGGCUUGUGUUUUUGUUCACAGUGGCUAAGUUCUUCACCCGAA
..(....(..........................(....(............).)........................).).
>AAPY01721327.1/686-605
GGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGCGUCCACACCAAGCUGUGCUCACAGUGGCUACGUUCUGUCCUCCAG
.(....(...........................(....(...........))........................))...
>AAHX01097732.1/7669-7751
UGGCCUGUGGAGCAGGGCUUAGCUGCUUGUGAGCAAGGUCUACAGCAAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGG
.(....(.............................(....(........))...........................))..
>AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.(....(...........................(....(...........))........................)..).
>BAAF04082680.1/4929-4846
UCGCUAAAGGCACAGAGCUUAGCUAAUUGGUGAGCAUUGAUCCCUGCUGUGUGUUGUUCACAGUGGCUAAGUUCAGUGCCGGAG
.(....(..............................(....(.......).)...........................))..
>CAAE01012021.1/28143-28225
UUGAGAGAGGGGCAGGACUUGGCUCGCUCCGUGAACAGUUCGGUCAGUGUGAGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
.(....(.................(....(..............................))..................)).
>AAPN01322484.1/470-549
GGUCCGGCGGAGCAGGGCUUAGCUGGCCUGUGAACAGUUAGUUCCCUGCGUGUUCACAGUGGCUAAGUUCCGCCCCUCCA
....(....(.............(....(............................)..)............)).....
>BX664751.9/57144-57062
UUUCGUGAGGUGCAGGACUUAGCUCACUCUGUGAACAGAUCUCGGAUAUCCUAUGUUCACAGUGGCUAAGUUCCGCUCCUCUG
....................(....(..........(....(..........))..........).)................
>AAPN01152921.1/1247-1165
UCUGUCGCGGCGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGCUGGACUCUUUGUUCACAGUGGCUAAGUUCUGCGCCCGCA
..(....(...............(....(...............................)..)...............))..
>AANH01005378.1/81241-81159
UUGACGGAGGGGCAGGACUUAGCUCGCUCCGUGAACAGUCCAGUGAAAGCCUGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
.........(....(.....................(....(.........).)..................)).........
>AANN01357153.1/1239-1159
CGGCCUGGGGAGCAGGGCUUAGCUGCUGGUGAACAGGGUGUCACCGAGUCUUGUUCACAGUGGCUAAGUUCCGCCCCCCUC
.(....(...........................(....(.........).).........................))..
>AC187115.2/53333-53251
UCUGGUGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGUUUCCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
..(....(...............(....(..............................)...)................)).
>AAFC03049555.1/15605-15685
UGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGUCCACAUCAAAUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.(....(...........................(....(............)).......................).).
>CAAE01015023.1/589695-589777
UCCAGCCAGGCACAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUUCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAG
...(....(..............(....(...............................)..)..............))...
>BAAE01159437.1/1557-1475
UUGGUGGAGGUGAAGGGCUUAGCUCGCUCUGUGAACAGUUCAGUGAAAACUCGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
........(....(......................(....(........)..)....................)).......
>AY866326.1/455-536
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUUCACUCCAAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
.(....(.............................(....(.......))..........................))...
>AAGV020400005.1/5570-5488
UCUGACAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGGUUUCCACCUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
..(....(...............(....(...............................)..)................)).
>CR847548.8/136623-136702
UUCUAGCAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAACUCUUUGUUCACAGUGGCUAAGUUCUGCAUCUGAG
....(....(.............(....(............................)..).............))....
>BAAF04071179.1/1519-1598
GCUGUGCGGCAGCAGGACUUAGCCCACAUGUGAACAGUGAGUGUAUGCCAUGUUCACAGUGGUUAAGUUCUGCCGCCACA
..........(....(.....................(....(.....))...................)).........
>BAAF04052671.1/6292-6371
UCUGGUCAGGCGUGGAACUUAGUUGACUUCUGAACAGAGUCUUUCAAGCGUGUUCACAGUGACUAAGUUCUUCUCUCGAG
..(....(...............(....(............................)..)................)).
>AANN01293679.1/8845-8763
UCUGAUGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGACUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
..(....(...............(....(...............................)..)................)).
>AAFR03052006.1/45216-45298
UGGCUUGAGGAGCAGGACUUAGCUGCCUUGUGAACAGAGUCAGCAUCAUAUUGUGUUCACAGUGGCUAAGUUCCGCUCCCCUU
.(....(................(....(...............................)..)................)).
>AAWZ02024153.1/17341-17260
GAUGACAAGCCGUAGGGCUUAGCCCACCUGUGAACAGCAUUGGAUUCAGCCAUGUUCACAGUGGCUAAGUUCCGCUGCUUGG
..(....(...........................(....(..........)).........................))..
3 (GNNY())
(GNNN())
(.N.)
 24 75.0
>BAAE01159437.1/1557-1475
UUGGUGGAGGUGAAGGGCUUAGCUCGCUCUGUGAACAGUUCAGUGAAAACUCGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
........(....(......................(....(..(..)..)..)....................)).......
>AANN01357153.1/1239-1159
CGGCCUGGGGAGCAGGGCUUAGCUGCUGGUGAACAGGGUGUCACCGAGUCUUGUUCACAGUGGCUAAGUUCCGCCCCCCUC
.(....(...........................(....(..(..)...).).........................))..
>AAWR02041732.1/2484-2565
UGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCGAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCGG
.(....(.............................(....(.(..)..))...........................))..
>AAKN02038501.1/44047-43965
UCUAACGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGGG
.......................(....(........(....((..).))............))...................
>AC187115.2/53333-53251
UCUGGUGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGUUUCCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
..(....(...............(....(..........(.........).........)...)................)).
>AY866326.1/455-536
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUUCACUCCAAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
.(....(.............................(....(.(..)..))..........................))...
>BAAF04052671.1/6292-6371
UCUGGUCAGGCGUGGAACUUAGUUGACUUCUGAACAGAGUCUUUCAAGCGUGUUCACAGUGACUAAGUUCUUCUCUCGAG
..(....(...............(....(.........(.......)..........)..)................)).
>AAFC03049555.1/15605-15685
UGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGUCCACAUCAAAUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.(....(...........................(....(..(.....)...)).......................).).
>BAAF04082680.1/4929-4846
UCGCUAAAGGCACAGAGCUUAGCUAAUUGGUGAGCAUUGAUCCCUGCUGUGUGUUGUUCACAGUGGCUAAGUUCAGUGCCGGAG
.(....(..............................(....(.(..)..).)...........................))..
>AAPN01152921.1/1247-1165
UCUGUCGCGGCGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGCUGGACUCUUUGUUCACAGUGGCUAAGUUCUGCGCCCGCA
..(....(...............(....(..........(.........)..........)..)...............))..
>AAHX01097732.1/7669-7751
UGGCCUGUGGAGCAGGGCUUAGCUGCUUGUGAGCAAGGUCUACAGCAAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGG
.(....(.............................(....(..(..)..))...........................))..
>CR847548.8/136623-136702
UUCUAGCAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAACUCUUUGUUCACAGUGGCUAAGUUCUGCAUCUGAG
....(....(.............(....(.........(........).........)..).............))....
>AANN01293679.1/8845-8763
UCUGAUGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGACUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
..(....(...............(....(..........(.........)..........)..)................)).
>CAAE01015023.1/589695-589777
UCCAGCCAGGCACAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUUCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAG
...(....(..............(....(..........(.........)..........)..)..............))...
>AANH01005378.1/81241-81159
UUGACGGAGGGGCAGGACUUAGCUCGCUCCGUGAACAGUCCAGUGAAAGCCUGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
.........(....(.....................(....(..(..)...).)..................)).........
>CU855875.13/5510-5593
UCGCUCACGGCGCAGAGCUUAGCUAAUCGGUGAGCAUUGAUCCCUUAAGAAAACUGUUCACAGUGGCUAAGUUCAGUGUCUGGA
.......(....(........................(....(.(..)...))......................).)......
>AAWZ02024153.1/17341-17260
GAUGACAAGCCGUAGGGCUUAGCCCACCUGUGAACAGCAUUGGAUUCAGCCAUGUUCACAGUGGCUAAGUUCCGCUGCUUGG
..(....(...........................(....(..(...)...)).........................))..
>AANH01005391.1/487407-487325
UUUCUGAAGAUGCAGAAUUUAGCUCAUUAGUGAGCAUUGAACCAAACAGGAAUUGUUCACAGUGGCUAAGUUCAGUGUCUGAC
.......(....(........................(....((..)..)).......................).)......
>CAAE01012021.1/28143-28225
UUGAGAGAGGGGCAGGACUUGGCUCGCUCCGUGAACAGUUCGGUCAGUGUGAGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
.(....(.................(....(........(............)........))..................)).
>AAFR03052006.1/45216-45298
UGGCUUGAGGAGCAGGACUUAGCUGCCUUGUGAACAGAGUCAGCAUCAUAUUGUGUUCACAGUGGCUAAGUUCCGCUCCCCUU
.(....(................(....(..........(.........)..........)..)................)).
>CT027840.6/2845-2927
UCUGAGCGGGUGCAGAGCUUGGCUGAUUGGUGAACGUGCAUGGCUUGUGUUUUUGUUCACAGUGGCUAAGUUCUUCACCCGAA
..(....(..........................(....(..(.....)...).)........................).).
>AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.(....(...........................(....(..(....)...))........................)..).
>AAPN01322484.1/470-549
GGUCCGGCGGAGCAGGGCUUAGCUGGCCUGUGAACAGUUAGUUCCCUGCGUGUUCACAGUGGCUAAGUUCCGCCCCUCCA
....(....(.............(....(.......(...........)........)..)............)).....
>AAPY01721327.1/686-605
GGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGCGUCCACACCAAGCUGUGCUCACAGUGGCUACGUUCUGUCCUCCAG
.(....(...........................(....(.(.....)...))........................))...
4 (GNNY())
(GNNN())
(.N.)
((U)U)C
 16 50.0
>AAFC03049555.1/15605-15685
UGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGUCCACAUCAAAUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.(....(.......(.(.................(....(..(.....)...))..............).)......).).
>AAWZ02024153.1/17341-17260
GAUGACAAGCCGUAGGGCUUAGCCCACCUGUGAACAGCAUUGGAUUCAGCCAUGUUCACAGUGGCUAAGUUCCGCUGCUUGG
..(....(.......((..................(....(..(...)...))................).)......))..
>AAKN02038501.1/44047-43965
UCUAACGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGGG
.......................(....(..(.(...(....((..).)).....).)....))...................
>BAAF04052671.1/6292-6371
UCUGGUCAGGCGUGGAACUUAGUUGACUUCUGAACAGAGUCUUUCAAGCGUGUUCACAGUGACUAAGUUCUUCUCUCGAG
..(....(...(.(.........(....(.........(.......)..........)..).........).)....)).
>BAAF04082680.1/4929-4846
UCGCUAAAGGCACAGAGCUUAGCUAAUUGGUGAGCAUUGAUCCCUGCUGUGUGUUGUUCACAGUGGCUAAGUUCAGUGCCGGAG
.(....(.......(.(....................(....(.(..)..).)..................).)......))..
>AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.(....(.......(.(.................(....(..(....)...))................).).....)..).
>AAWR02041732.1/2484-2565
UGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCGAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCGG
.(....(.......(.(...................(....(.(..)..))..................).)......))..
>CAAE01015023.1/589695-589777
UCCAGCCAGGCACAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUUCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAG
...(....(.....(.(......(....(.............(....)............)..)......).).....))...
>AY866326.1/455-536
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUUCACUCCAAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
.(....(.......(.(...................(....(.(..)..))..................).).....))...
>CAAE01012021.1/28143-28225
UUGAGAGAGGGGCAGGACUUGGCUCGCUCCGUGAACAGUUCGGUCAGUGUGAGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
.(....(.......(.(.......(....(........(............)........))........).).......)).
>AAFR03052006.1/45216-45298
UGGCUUGAGGAGCAGGACUUAGCUGCCUUGUGAACAGAGUCAGCAUCAUAUUGUGUUCACAGUGGCUAAGUUCCGCUCCCCUU
.(....(.......(.(......(....(..........(.........)..........)..)......).).......)).
>AAHX01097732.1/7669-7751
UGGCCUGUGGAGCAGGGCUUAGCUGCUUGUGAGCAAGGUCUACAGCAAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGG
.(....(.......(.(...................(....(..(..)..))..................).)......))..
>AAPN01322484.1/470-549
GGUCCGGCGGAGCAGGGCUUAGCUGGCCUGUGAACAGUUAGUUCCCUGCGUGUUCACAGUGGCUAAGUUCCGCCCCUCCA
....(....(....((.......(....(.......(...........)........)..)......).)...)).....
>CT027840.6/2845-2927
UCUGAGCGGGUGCAGAGCUUGGCUGAUUGGUGAACGUGCAUGGCUUGUGUUUUUGUUCACAGUGGCUAAGUUCUUCACCCGAA
..(....(...(.(....................(....(..(.....)...).)..................).)...).).
>AANN01357153.1/1239-1159
CGGCCUGGGGAGCAGGGCUUAGCUGCUGGUGAACAGGGUGUCACCGAGUCUUGUUCACAGUGGCUAAGUUCCGCCCCCCUC
.(....(.......(.(.................(....(..(..)...).)................).)......))..
>AAPY01721327.1/686-605
GGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGCGUCCACACCAAGCUGUGCUCACAGUGGCUACGUUCUGUCCUCCAG
.(....(.......(.(.................(....(.(.....)...))................).).....))...

>AAKN02038501.1/44047-43965
UCUAACGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGGG
.......................(....(...............................)..)...................
.......................(....(........(....(.....))............))...................
.......................(....(........(....((..).))............))...................
.......................(....(..(.(...(....((..).)).....).)....))...................
>AAPN01322484.1/470-549
GGUCCGGCGGAGCAGGGCUUAGCUGGCCUGUGAACAGUUAGUUCCCUGCGUGUUCACAGUGGCUAAGUUCCGCCCCUCCA
.......................(....(............................)..)...................
....(....(.............(....(............................)..)............)).....
....(....(.............(....(.......(...........)........)..)............)).....
....(....(....((.......(....(.......(...........)........)..)......).)...)).....
>CAAE01015023.1/589695-589777
UCCAGCCAGGCACAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUUCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAG
.......................(....(...............................)..)...................
...(....(..............(....(...............................)..)..............))...
...(....(..............(....(..........(.........)..........)..)..............))...
...(....(.....(.(......(....(.............(....)............)..)......).).....))...
>CAAE01012021.1/28143-28225
UUGAGAGAGGGGCAGGACUUGGCUCGCUCCGUGAACAGUUCGGUCAGUGUGAGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
........................(....(.............................).).....................
.(....(.................(....(..............................))..................)).
.(....(.................(....(........(............)........))..................)).
.(....(.......(.(.......(....(........(............)........))........).).......)).
>AANN01357153.1/1239-1159
CGGCCUGGGGAGCAGGGCUUAGCUGCUGGUGAACAGGGUGUCACCGAGUCUUGUUCACAGUGGCUAAGUUCCGCCCCCCUC
..................................(....(.........).).............................
.(....(...........................(....(.........).).........................))..
.(....(...........................(....(..(..)...).).........................))..
.(....(.......(.(.................(....(..(..)...).)................).)......))..
>AAFR03052006.1/45216-45298
UGGCUUGAGGAGCAGGACUUAGCUGCCUUGUGAACAGAGUCAGCAUCAUAUUGUGUUCACAGUGGCUAAGUUCCGCUCCCCUU
.......................(....(...............................)..)...................
.(....(................(....(...............................)..)................)).
.(....(................(....(..........(.........)..........)..)................)).
.(....(.......(.(......(....(..........(.........)..........)..)......).).......)).
>BAAF04082680.1/4929-4846
UCGCUAAAGGCACAGAGCUUAGCUAAUUGGUGAGCAUUGAUCCCUGCUGUGUGUUGUUCACAGUGGCUAAGUUCAGUGCCGGAG
.....................................(....(.......).)...............................
.(....(..............................(....(.......).)...........................))..
.(....(..............................(....(.(..)..).)...........................))..
.(....(.......(.(....................(....(.(..)..).)..................).)......))..
>AAWZ02024153.1/17341-17260
GAUGACAAGCCGUAGGGCUUAGCCCACCUGUGAACAGCAUUGGAUUCAGCCAUGUUCACAGUGGCUAAGUUCCGCUGCUUGG
..............................(....(...................).)........................
..(....(...........................(....(..........)).........................))..
..(....(...........................(....(..(...)...)).........................))..
..(....(.......((..................(....(..(...)...))................).)......))..
>BAAF04052671.1/6292-6371
UCUGGUCAGGCGUGGAACUUAGUUGACUUCUGAACAGAGUCUUUCAAGCGUGUUCACAGUGACUAAGUUCUUCUCUCGAG
.......................(....(............................)..)...................
..(....(...............(....(............................)..)................)).
..(....(...............(....(.........(.......)..........)..)................)).
..(....(...(.(.........(....(.........(.......)..........)..).........).)....)).
>AAPY01721327.1/686-605
GGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGCGUCCACACCAAGCUGUGCUCACAGUGGCUACGUUCUGUCCUCCAG
..................................(....(...........)).............................
.(....(...........................(....(...........))........................))...
.(....(...........................(....(.(.....)...))........................))...
.(....(.......(.(.................(....(.(.....)...))................).).....))...
>CT027840.6/2845-2927
UCUGAGCGGGUGCAGAGCUUGGCUGAUUGGUGAACGUGCAUGGCUUGUGUUUUUGUUCACAGUGGCUAAGUUCUUCACCCGAA
.......................(....(...............................)..)...................
..(....(..........................(....(............).)........................).).
..(....(..........................(....(..(.....)...).)........................).).
..(....(...(.(....................(....(..(.....)...).)..................).)...).).
>AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
..................................(....(...........)).............................
.(....(...........................(....(...........))........................)..).
.(....(...........................(....(..(....)...))........................)..).
.(....(.......(.(.................(....(..(....)...))................).).....)..).
>AY866326.1/455-536
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUUCACUCCAAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
.......................(....(.............................)...)...................
.(....(.............................(....(.......))..........................))...
.(....(.............................(....(.(..)..))..........................))...
.(....(.......(.(...................(....(.(..)..))..................).).....))...
>AAHX01097732.1/7669-7751
UGGCCUGUGGAGCAGGGCUUAGCUGCUUGUGAGCAAGGUCUACAGCAAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGG
...................................(....(...........)).............................
.(....(.............................(....(........))...........................))..
.(....(.............................(....(..(..)..))...........................))..
.(....(.......(.(...................(....(..(..)..))..................).)......))..
>AAWR02041732.1/2484-2565
UGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCGAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCGG
...................................(....(.........))..............................
.(....(.............................(....(.......))...........................))..
.(....(.............................(....(.(..)..))...........................))..
.(....(.......(.(...................(....(.(..)..))..................).)......))..
>AAFC03049555.1/15605-15685
UGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGUCCACAUCAAAUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
..................................(....(............))...........................
.(....(...........................(....(............)).......................).).
.(....(...........................(....(..(.....)...)).......................).).
.(....(.......(.(.................(....(..(.....)...))..............).)......).).
>CR847548.8/136623-136702
UUCUAGCAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAACUCUUUGUUCACAGUGGCUAAGUUCUGCAUCUGAG
.......................(....(............................)..)...................
....(....(.............(....(............................)..).............))....
....(....(.............(....(.........(........).........)..).............))....
>AANN01293679.1/8845-8763
UCUGAUGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGACUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
.......................(....(...............................)..)...................
..(....(...............(....(...............................)..)................)).
..(....(...............(....(..........(.........)..........)..)................)).
>AANH01005391.1/487407-487325
UUUCUGAAGAUGCAGAAUUUAGCUCAUUAGUGAGCAUUGAACCAAACAGGAAUUGUUCACAGUGGCUAAGUUCAGUGUCUGAC
.....................................(....(......))................................
.......(....(........................(....(......)).......................).)......
.......(....(........................(....((..)..)).......................).)......
>CU855875.13/5510-5593
UCGCUCACGGCGCAGAGCUUAGCUAAUCGGUGAGCAUUGAUCCCUUAAGAAAACUGUUCACAGUGGCUAAGUUCAGUGUCUGGA
.....................................(....(........))...............................
.......(....(........................(....(........))......................).)......
.......(....(........................(....(.(..)...))......................).)......
>AC187115.2/53333-53251
UCUGGUGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGUUUCCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
.......................(....(..............................)...)...................
..(....(...............(....(..............................)...)................)).
..(....(...............(....(..........(.........).........)...)................)).
>BAAE01159437.1/1557-1475
UUGGUGGAGGUGAAGGGCUUAGCUCGCUCUGUGAACAGUUCAGUGAAAACUCGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
........................(....(..............................)).....................
........(....(......................(....(........)..)....................)).......
........(....(......................(....(..(..)..)..)....................)).......
>AANH01005378.1/81241-81159
UUGACGGAGGGGCAGGACUUAGCUCGCUCCGUGAACAGUCCAGUGAAAGCCUGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
........................(....(..............................)).....................
.........(....(.....................(....(.........).)..................)).........
.........(....(.....................(....(..(..)...).)..................)).........
>AAPN01152921.1/1247-1165
UCUGUCGCGGCGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGCUGGACUCUUUGUUCACAGUGGCUAAGUUCUGCGCCCGCA
.......................(....(...............................)..)...................
..(....(...............(....(...............................)..)...............))..
..(....(...............(....(..........(.........)..........)..)...............))..
>BAAF04073622.1/5313-5395
UGGGCUCAGAUGCAGGACUUAGUUCAUUGGUGAGCAUUGAGCCACACAGGAAUUGUUCACAGUGGCUAAGUUCAGUACCUGAC
.....................................(....(.......))...............................
.(....(..............................(....(......)).............................)).
>AAGV020400005.1/5570-5488
UCUGACAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGGUUUCCACCUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
.......................(....(...............................)..)...................
..(....(...............(....(...............................)..)................)).
>BX664751.9/57144-57062
UUUCGUGAGGUGCAGGACUUAGCUCACUCUGUGAACAGAUCUCGGAUAUCCUAUGUUCACAGUGGCUAAGUUCCGCUCCUCUG
....................(....(......................................).)................
....................(....(..........(....(..........))..........).)................
>BAAF04071179.1/1519-1598
GCUGUGCGGCAGCAGGACUUAGCCCACAUGUGAACAGUGAGUGUAUGCCAUGUUCACAGUGGUUAAGUUCUGCCGCCACA
.....................................(....(.....))..............................
..........(....(.....................(....(.....))...................)).........
>AF480561.1/2-79
CUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
...............................(....(............))...........................
>CAAB02004947.1/150354-150272
UUUCUAAAGACACAGGACUUAGCUCAUUAGUGAGCAUUGAACCCAACACAGAUUGUUCACAGUGGCUAAGUUCAGUGUCUGAC
.....................................(....(........))..............................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (GNNY()) < 0.001 15.3
AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.........1.........2.........3.........4.........5.........6.........7.........8..
1234567890123456789012345678901234567890123456789012345678901234567890123456789012
2 (GNNN()) < 0.001 6.73
AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.........1.........2.........3.........4.........5.........6.........7.........8..
1234567890123456789012345678901234567890123456789012345678901234567890123456789012
3 ((U)U)C < 0.001 2.48
AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.........1.........2.........3.........4.........5.........6.........7.........8..
1234567890123456789012345678901234567890123456789012345678901234567890123456789012
4 (.N.) < 0.001 1.15
AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.........1.........2.........3.........4.........5.........6.........7.........8..
1234567890123456789012345678901234567890123456789012345678901234567890123456789012
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 (GNNY()) < 0.001 15.3
AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.........1.........2.........3.........4.........5.........6.........7.........8..
1234567890123456789012345678901234567890123456789012345678901234567890123456789012
2 ((C)A)C < 0.001 1.58
AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.........1.........2.........3.........4.........5.........6.........7.........8..
1234567890123456789012345678901234567890123456789012345678901234567890123456789012
3 (RGNY()) < 0.001 7.33
AY866333.1/592-673
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
UGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
.........1.........2.........3.........4.........5.........6.........7.........8..
1234567890123456789012345678901234567890123456789012345678901234567890123456789012
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).