D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Group II catalytic intron   (Rfam: RF00029)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
((Y)NN)R
((N)NR)Y
R(AN)N
A(G(C))
97.8
98.9
95.5
79.8
((Y)NN)R
R(AN)N

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.2 %
(± 0.304 %)
Decision tree:

5-fold cross-validation: 90.5 %
(± 3.91 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 91.3 %
(± 5.38 %)
of AJ131136.1/1732-1807
AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
((((.((((((((((((..))))))..)))))).)))).(.((((((((((((((..)))))))))))..)))..)
.........1.........2.........3.........4.........5.........6.........7......
1234567890123456789012345678901234567890123456789012345678901234567890123456

abstract shape: ()()

Number of sequences
Structure ORBs (out of 89) (%)
1 ((Y)NN)R
 82 92.1
>Z00044.2/23180-23109
UUGAGCCGGAUGAAAGGAAACUUUCACGUCCGAUUUUGAAGGGGGGGAGAUCCUAUAGAAUCCUAUCCCAAU
..........((............)..)............................................
>X03481.1/524-600
AGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGUGGCAGUAAGGGUGACUUAUCUGUCAACUUUUCC
..........((............)..).................................................
>U77945.1/1848-1919
AACCGCCGUGUACGGAACCGUACGCACGGUGGUGUGAGAGGACGGCGGGUGUGAAUCCGCCUCCUACUCGAU
........((............)..)..............................................
>AJ316582.1/98150-98072
AGGAGCCGUGUGAGAUGAAAGUCUCAUGCACGGUUUUGAAUGAGAGAAAGAAGUGAGGAAUCCUCUUUUCGACUCUGAC
..........((............)..)...................................................
>V00712.1/1227-1289
GAGAGCUUUUUGCGGGGAAACUUGCAAGUCAAGUUUGGGGGGAGGCGGGCGUCGACCCAACCU
..........((............)..)...................................
>M68929.1/120754-120816
GGGAGCCGGAUGAGGGAGAAAUUUCUCACGUCCGGAUCUUUGAGAGCCUCCGGGCUACUCUCU
..........(..(............)..).................................
>AJ131144.1/1753-1833
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCUGAU
..........((............)..).....................................................
>AF029891.1/4522-4594
UUGAGCCGUAUGCCAUGAAAGUGGCACGUACGGUUCUGAGGGGGGGAAAGUCUGAGAGGACCUACCUAUCCCA
..........((............)..).............................................
>X07106.1/2899-2978
UUGAGCCGGAUGAUGAAAAAUUAUCAUGUCCGGUUCUUUCGGGGGAUGAAUUGAAUCUAUAAGAAUUCACCUAUCCUAAU
..........((............)..)....................................................
>X01088.1/1893-1955
GAGAGCUUUUUGCGGGGAAACUUGCAAGUAAAGUUUGGGGGGAGGCGGGCGUCGACCCAACCU
..........((............)..)...................................
>X63625.1/1815-1875
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGAGGGAGGCGGGCGUCGACCCAAC
..........((............)..).................................
>AJ316582.1/78387-78450
UUGAGCUGUACGAGAUGAAAGUCUCAUAUACGGUUCUCAGAGGGGGAGUUCCGCCUAUCUCAAU
..........((............)..)....................................
>AF314856.1/1250-1311
ACGAGCCACAUGCAGGGAAACUUGCACGUGUGGUUCUGGCCGGGGACCCCGGUAUACUGUAC
..........((............)..)..................................
>X07106.1/1306-1373
UUGAGCUGUACGAGAUGAAAGUCUCAUAUACAGUUCUUAGGGGGGUUUAAUAGUUUACCUAUCUCAAU
..........((............)..)........................................
>Z00044.2/45483-45410
AGGAGCCGUAUGAGGUGAAAAUCUCACGUACGGUUCUGGAACGGAGAUUCUUUCAAUUGAAUGACGACCGUAAC
..........((............)..)..............................................
>AJ277126.1/8230-8302
UUGAGCCGUGUGCGUUGAAAGAUGCAUGCACGGUUCUUAGGGGGGGAAAGCCGGUAACCGUACCUAUCCCAAU
..........((............)..).............................................
>X71404.1/2822-2898
AGGAGCCGUAUGAGGUGAAAGUCUCAAGUACGGUUUUGAAGACCAGCAGGAUUGGUGACAGUCUUGCUGAGUUUAAU
..........((............)..).................................................
>X73671.1/1293-1367
UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUAAGAGGGGAAAAUGAGUGAUCAUCUACCUAUUCUAAC
..........((............)..)...............................................
>X55026.1/77786-77867
GAGAGCCGUAUGAUGGGAAACUAUCACGUACGGUUCGGGAAAAGGUAUAUAUACUGAUAAGAGGUAUACGUAUCUAGUUCAU
..........((............)..)......................................................
>AF074613.1/60570-60649
UUGAGCCGUAUGCCGGGAAACUGGCACGUACGGUUCUUAGGGGGCGGUGAUGCAGUAAUGCAUCACUGCUACCCGAUCGU
..........((............)..)....................................................
>U41288.1/3118-3192
UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUACCGGGGGAAAGCUUGAGAGAGCCUACCUAUCGGAAC
..........((............)..)...............................................
>X86563.2/93178-93102
AGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGGGACAGUAAGGAUGACUUAUCUGUCGACUUUUCC
..........((............)..).................................................
>X04336.1/3210-3313
GAGAGCCGUAUGCAGGGAAACUUGCACGUACGGUUCGGAGGGAGGUCUCUCGUUGCCAGUUCUAAUCUAUUGAUAAGGAUCACGGUGCGGGUUAUCGACCCUAC
..........((............)..)............................................................................
>M68929.1/49817-49892
UUGAGCCGUAUGCGGGAAAACUCGCACGUACGGUUCUUAGGGGGGGGAAAGCUUGAGAGGGCCUACCUAUCCCGAC
..........((............)..)................................................
>V00694.1/5204-5294
GAGAGCCGUAUGAUAUGAAAGUAUCACGUACGGUUCGGAGAGGGCUCUUUUAUAUGAAUGUUAUUACAUUCAGAUAGGUUUGCUACUCUAC
..........((............)..)...............................................................
>Z00044.2/84143-84067
AGGAGCUGGAUGAGAAGAAACUCUCACGUCCGGUUCUGUAGUAGAGAUGGAAUUCAGAAACAACCAUCAACUAUAAC
..........((............)..).................................................
>X17395.1/1934-1994
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGGGGGAGGCGGGCGUCGACCCUAC
..........((............)..).................................
>AJ277126.1/35792-35885
GAGAGCCCGGUGCGGUGAAAGUCGCACGCCGGGUUCGGGGAGAACUCUCUGUAACUAAAAUAUUUCGGUAUCACGUUAUGGUUAGUCACUCCAC
..........((............)..)..................................................................
>X05422.1/3488-3558
UUGAGCCGUACGAGAUGAAAUUUUCAUAUACGGUUCUCGGAGGGGGAGUCGGGCUAGUUACCUAUCUCAAU
..........((............)..)...........................................
>X17375.2/29364-29438
UUGAGCCGUGUGCGGUGAAAGUCGCAUGCACGGUUCUACUGGGGGGAAAGCCUGAGAGGGCCUACCUAUCCAACU
..........((............)..)...............................................
>Z69899.1/2926-3021
GAGAGCCGUAUGCGGUGAAAGUCGCACGUACGGUUCGGAGGAGAGUUGUUGGUUUCUAAGGUUUCUUUAGACUAAGGACUGGCUGCUUAUCCUACA
..........((............)..)....................................................................
>AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
..........((............)..)................................................
>AJ277126.1/33096-33168
GCGAGCCGUAUGAUGGGAAACUAUCACGUACGGUUCUGAGGGCAAGGUAUAUUCUAAAUGCCUUGACCCCUAC
..........((............)..).............................................
>AF029891.1/9161-9235
UUGAGCCGUAUGCGAUGAAAGUCGCACGUACGGUUCUUAGAGGGGGAAAGUUCGAGAGGACCUACCUAUCUCAAC
..........((............)..)...............................................
>AF065404.1/6521-6444
UUGAGCCGUAUGUGCUGAAAGGUACAAGUACGGUUCUUAGGGGAGAAAGAGUUGGUAACACCUCUGACUUACCCGACU
..........((............)..)..................................................
>AJ277126.1/6413-6487
GUGAGCCGUGUGCGAUGAAAGUCGCAAGCACGGUUCUGAUGGGGGGAAAACGAGAGAUCGUCUACCUAUCCAACU
..........((............)..)...............................................
>Y18999.2/2881-2957
UUGAGCCGGAUGAGGGGCGACUCUCAUGUCCGGUUCUUAGGGGACGGCGGCGCAGUAAUGCGCUGCUGUUACCCGAC
..........((............)..).................................................
>U13767.1/4803-4881
GGGAGCCGUGUGCAGCGAAAGUUGCACGCACGGAUCUAACAGAGAGGGACGGGGAAUAAUAUCCCCUCUCGACUCUAAC
..........((............)..)...................................................
>M36911.1/2445-2539
GAGAGCCGUAUGCGGUGAAAGUCGCACGUACGGUUCGGAGGAGAGUUUUUGGUUUCUAAGGUCUAUAUAGACUAAGGACUGGCUGCUUAUCCUAC
..........((............)..)...................................................................
>X03834.1/1418-1494
GGGAGCCGGAUGAGAAGAAACUCUCAUGUCCGGUUCUGUAGUAGAGAUGGAAUAGGGAAAUAACCAUCAACUAUAAC
..........((............)..).................................................
>AJ131145.1/1727-1802
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGGAAGCUUGAAAGAGCCUACCCAUCCCGAU
..........((............)..)................................................
>L36897.1/2659-2743
GAAAGCCGUAUGAUGGGAAACUAUCACGUACGGUUUGGGAAAGGCUCUUUAACACGUGGCAACAUAGGUUAAUUUGCUAUUUCAU
..........((............)..).........................................................
>X04465.1/116516-116403
GAGAGCACAGUACGAUGAAAGUUGUAAGCUGUGUUUGGGGGGGAGUUAUUGUCUAUCAAAGGCCUCUAUGGUAAAAUAAAUCAAUAAAGUCUAAGAGACGAUGGCUUACCCUGU
..........((............)..)......................................................................................
>Z00044.2/44465-44397
CUGAGCCGUAUGAGGUAAGAAAUUCUCAAGUACGGUUCUAAGGGAAGGAAUUGAACUACCUAUUCCGGC
..........(..(............)..).......................................
>X62341.1/1274-1336
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGGGGGAGACGGGCGUCGACCCAACCU
..........((............)..)...................................
>AB027572.1/1941-1862
AGGAGCCGAAUGAAAUCAAAAUUUCAUGUUCGGUUUUGAAUUAGAGACGUUAAAAAUAAUCAACCAACGUCGACUAUAAC
..........((............)..)....................................................
>AJ130737.1/1761-1840
UUGAGCCGUAUGCGGGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGGGAGCUUGCUCGAAAGAGCCUACCUAUCCCGAU
..........((............)..)....................................................
>M15176.1/580-656
AGGAGCUGGAUGAGAAGAAACUCUCAUGUCCAGUUUUGUAGUAGAGAUGGAACUAAGAAGGAACCAUCGACUAUAAC
..........((............)..).................................................
>AF235045.1/658-731
GAAAGCCGUAUUCGAUGAAAGUCGUAUGUACGGCUUGGAGGGAGAUCUUUCAUAUCUUUCGAGAUCCACCCUAC
..........((............)..)..............................................
>AJ315331.1/53-130
AGGAGCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGUAAUAGCGAUGGGCACAGUGAUGUUAUCAUCGACUAUGAU
..........((............)..)..................................................
>X57546.1/2817-2907
GAGAGCCGUAUGAUAUGAAAGUAUCACGUACGGUUCGGAGAGGGCUCUCUUAUAUGAUUGUUAUUACAAUCAGAUAGGUUUGCUACUCUAC
..........((............)..)...............................................................
>X04465.1/8-84
AGAAGCCGUAUGAAAUGAAAAUAUCAAGUACGGUUUUGUAAAGUGACAAUUUAGGUAACUUAUUUGUCAACUUUUCC
..........((............)..).................................................
>X77508.1/2333-2408
GGGAGCGGUAUGAGCCGAGAGGUUCACGUACCGUUCUGCGAGAGGCUGCGGGGGAGGUUCCUGCGGCCUACUCACC
..........((............)..)................................................
>U41288.1/27369-27451
GAGAGCCGUAUGCGGUGAAAGUUGCACGUACGGUUCGGUGGGAGGUUUCUUAUAUCCCUCGUGGAGUAGGCUAUCGACCCAAC
..........((............)..).......................................................
>Z72500.1/3161-3251
GAAAGCCGUAUGAGGGGAAACUUUCACGUACGGUUUGGAGGAAAGUCGGGAAGCUCUAAGGUAUUUGCUAUGAACUCUCGGCUCAUCCUAC
..........((............)..)...............................................................
>AB042240.3/88332-88259
GAAAGCCGUAUUCGAUGAAAGUCGUAUGUACGGCUUGGAGGGAGAUCUUUCCUAUCUUUCGAGAUCCACCCUAC
..........((............)..)..............................................
>AJ277126.1/9249-9325
AGGAGCCGUAUGAAUGGAGACAUUCACGUACGGUUUUGGAGUAGCAGGAUAUAUGGUAACAUGUACUUGACUAUAAG
..........((............)..).................................................
>AM489440.1/2183-2254
AACCGCCGUAUGCGGAGCCGCAUGUACGGUGGUGUGAGAGGACGGCGGGAGUGAUCCCGCCUCCUACUCGAU
........((............)..)..............................................
>AF243383.1/10225-10322
CAGAGCCGUAUACUCCGAGAGGGGUACGUACGGUUCCCGAAGAGGGUGGUGCAAACCAGUCACAGUAAUGUGAACAAGGCGGUACCUCCCUACUUCAC
..........((............)..)......................................................................
>AJ277126.1/2879-2953
UUCAGCCGUGUGCGGUGAAAGUCGCACGCACGGUUGUGAGGGGGGGAAAAUCUGUGAAGAUCUACCUAUCCCGAU
..........((............)..)...............................................
>DQ787115.1/750-834
GAACGCCGUAUGCGGUGAAAGUCGCACGUACGGUGUGGAGCGGGGGAAAAAUUGGAGAUAACAUCAAAGAUUUACCUAUCGCUAU
..........((............)..).........................................................
>FM992111.1/3630-3713
GAACGCCGUAUGCGGUGAAAGUCGCACGUACGGUGUGAGGCGGGGGAAAAGUUGGAGAUAACAUCAAAUUCUUACCUAUCGUAC
..........((............)..)........................................................
>AF200692.2/21112-21025
GAGAGCCGGAUGCGCUGAAAGGUGCACGUCCGGUUCGGGGAGGAGAGGCAGGGAAAUAGUCCGACUACGCCCUGCCUCUUACUCUUAC
..........((............)..)............................................................
>Z00044.2/12705-12618
GAGAGCCAAAUGAAUCGAAAGAUUCAUGUUUGGUUCGGGAAGGGAUUAUGGAAUUUUGGAAAGGAAUGGAAAAAUAAUCUACUUUCAU
..........((............)..)............................................................
>AC145820.20/76117-76030
GAGAGCCAAAUGAAUUGAAAGAUUCAUGUUUGGUUCGGGAAGAGAUCAUAGACAUUUUGAAAUGAAUGGAAAGAGAAUCUACUUUCAU
..........((............)..)............................................................
>AY248839.1/1808-1884
GGGAGCGGUGUGAAUCGAGAGGUUCACGCACCGUUCUGCGAGAGGCCGGCUGGUGAAACUCCUCCGGCCUACUCACC
..........((............)..).................................................
>X02819.1/3326-3410
GAGAGCCGUAUAAUUACGAAAGUAUCCCGUACGGUUCGGUGACGAGCCGUGUCAACCCUGCAAAGGGAAUGCGUCUUAGUUCAAU
..........(.(............)..)........................................................
>Z00028.1/5121-5234
GAGAGCACAGUACGAUGAAAGUUGUAAGCUGUGUUCGGGGGGGAGUUAUUGCCUAUCGUUGUCCUCUAUGGUAGAACCCGUCGGGGAGGCCUGAGAGGCGGUGGUUUACCCUGU
..........((............)..)......................................................................................
>EF165030.1/2861-2955
GAACGCCGUGUGCGGGGAAACUCGCACGCACGGUGUGAAGCGGGGAAAAAUAGCCCCUCCGGGUAAUGCCGAGGGUGACUAUUACCUAUCGCUAU
..........((............)..)...................................................................
>V00166.1/1829-1941
GAGAGCACAGUACGAUGAAAGUUGUAAGCUGUGUUCGGGGGGGAGUUAUUGUCUAUCGUUGGCCUCUAUGGUAGAAUCAGUCGGGGGACCUGAGAGGCGGUGGUUUACCCUGC
..........((............)..).....................................................................................
>AM087200.3/1962-1851
GAAAGCCGUGUGCAAUGAAAAGUGCAAGCACGGCUUGGGGAGGGAUCUUUACUUGUUUAUUUAAUUUAAGAUUAACAUUUAUUUUAUUUAACAAGGAACUUAUCUACUCCAU
..........((............)..)....................................................................................
>AJ316582.1/9914-9993
AGGAGCCGAAUGAAACCAAAGUUUCAUGUUCGGUUUUGAAUUAGAGACGUUAAAAAUAAUGAAUCGACGUCGACUAUAAC
..........((............)..)....................................................
>M81726.1/5191-5288
GUGAGCCGUAUGAUGGGCAACUAUCUCCUGCGGUUCGGAGAGGACUCAGCUGUUAGUUAGUACCCCCGUCGGUUUCGGGGUGGACCCUUUUACUCUAU
..............................(.(............)..).................................................
>Y08501.2/169475-169584
GUGAGCCUAGUGAUAGGAGACUAUCUAGCUUGGUUCGGAGAGCACUUGUUGGGUUAAAAACUUUUUUUGUUGCUAAAUGUUACAGCCUAAAUGCUGAACUAUUGACUCUA
..........((............)..)..................................................................................
>AF143421.1/868-1007
GUGAGCCGUGUGAUGGGAAACCUCCCCGCACGGUUCGGAGAGCACUUAAUUAGAAUGUUCCUGGGGGUACCACAUCAUUGCAAGGGUAAAAGAGCUCGAUUCGCAGAUUGGUUCGACCCGGAAUUCACUUCCGACCCUGU
..........((............)..)................................................................................................................
>Y08501.2/135699-135828
UCGAGCCGUAUGAAGGGAAACUCUCACGUACAGUUUGUUUUUUUUGGGGGGGGCAGGAGCCCGACAGGGUCCCCCACUGACUUGGCCCGGGCCUAAGUUAAAGUGAAGUGGUGGGCCUACCCAUCCCAAC
..........((............)..)......................................................................................................
>X72287.1/717-859
GUGAGCCGUGUGAUGGGAAACCUUCCCGCACGGUUCGGAGAGCACUGAAUUAGAAUGAGAGGUUCACCACCACAUCAUUGCAUGCAAGGGGAGCUCGCUCGAUUCGCAAAUUGGUCCGACUCGUAAUUCACUUCUGACUCCGU
..........((............)..)...................................................................................................................
>X60045.1/1000-1142
GUGAGCCGUGUGAUGGGAAACCUUCCCGCACGGUUCGGAGAGCACUGAAUUAGAAUGAGAGGUUCACCACCACAUCAUUGCAUGCAAGGGGAGCUCGCUCGAUUCGCAAAUAGGUCCGACUCGUAAUUCACUUCUGACUCUGU
..........((............)..)...................................................................................................................
>AF143423.1/825-965
GUGAGCCGUGUGAUGGGAAACCUCCCCGCACGGUUCGGAGAGCACUUAAUUAGAAUGUUCCUGGGGGGUACCACAUCAUUGCAAGGGUAACAGAGCUCGAUUCGCAGAUUGGUUCGACCCGGAAUUCACUUCCGACCCUGU
...................................((............)..)........................................................................................
>M68929.1/7762-7915
GAGAGCCGUAUGCGAGGAGACUUGCACGUACGGUUCGGAGGAAGGCCAUUGAUACCUAAUGAAAAUAUCACCAUGACUAAGGUAUAAGCCGCGCCUUGAAAGUCCAGAGGACUUGGUUUUAUUGGGUAGUUGAGGUUGGUGGCCCAUCUCUUAC
..........((............)..)..............................................................................................................................
>M68929.1/41010-41093
GUGAGCCGUGUAAUGGGCAACUAUUUCGCACGGUUCGGAGGGCACUUCAGUAAGCCCUACAAGGGCUGAAGUCUUGACCCCUAU
..........((............)..)........................................................
>AJ131147.1/1719-1794
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGAAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
..........((............)..)................................................
2 ((Y)NN)R
((N)NR)Y
 72 80.9
>M68929.1/120754-120816
GGGAGCCGGAUGAGGGAGAAAUUUCUCACGUCCGGAUCUUUGAGAGCCUCCGGGCUACUCUCU
..........((..............)..).............(.(........)..).....
>X07106.1/2899-2978
UUGAGCCGGAUGAUGAAAAAUUAUCAUGUCCGGUUCUUUCGGGGGAUGAAUUGAAUCUAUAAGAAUUCACCUAUCCUAAU
..........((............)..)..............((..........................)..)......
>X03481.1/524-600
AGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGUGGCAGUAAGGGUGACUUAUCUGUCAACUUUUCC
........((................)..)............(.(......................)..)......
>M68929.1/49817-49892
UUGAGCCGUAUGCGGGAAAACUCGCACGUACGGUUCUUAGGGGGGGGAAAGCUUGAGAGGGCCUACCUAUCCCGAC
..........((............)..)............((..............................)..)
>X02819.1/3326-3410
GAGAGCCGUAUAAUUACGAAAGUAUCCCGUACGGUUCGGUGACGAGCCGUGUCAACCCUGCAAAGGGAAUGCGUCUUAGUUCAAU
..........(.(............)..).............((................................)..).....
>AJ316582.1/78387-78450
UUGAGCUGUACGAGAUGAAAGUCUCAUAUACGGUUCUCAGAGGGGGAGUUCCGCCUAUCUCAAU
..........((............)..)........((......................)..)
>Z00044.2/23180-23109
UUGAGCCGGAUGAAAGGAAACUUUCACGUCCGAUUUUGAAGGGGGGGAGAUCCUAUAGAAUCCUAUCCCAAU
..........((............)..)..........((............................)..)
>AF029891.1/9161-9235
UUGAGCCGUAUGCGAUGAAAGUCGCACGUACGGUUCUUAGAGGGGGAAAGUUCGAGAGGACCUACCUAUCUCAAC
..........((............)..)..........((...............................)..)
>V00694.1/5204-5294
GAGAGCCGUAUGAUAUGAAAGUAUCACGUACGGUUCGGAGAGGGCUCUUUUAUAUGAAUGUUAUUACAUUCAGAUAGGUUUGCUACUCUAC
..........((............)..)...............(..(................................)..)........
>AF029891.1/4522-4594
UUGAGCCGUAUGCCAUGAAAGUGGCACGUACGGUUCUGAGGGGGGGAAAGUCUGAGAGGACCUACCUAUCCCA
..........((............)..)..............((.....................)..)....
>X17395.1/1934-1994
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGGGGGAGGCGGGCGUCGACCCUAC
..........((............)..).......((....................)..)
>X62341.1/1274-1336
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGGGGGAGACGGGCGUCGACCCAACCU
..........((............)..)........((...................)..)..
>AJ277126.1/33096-33168
GCGAGCCGUAUGAUGGGAAACUAUCACGUACGGUUCUGAGGGCAAGGUAUAUUCUAAAUGCCUUGACCCCUAC
..........((............)..)..........((.............................)..)
>X01088.1/1893-1955
GAGAGCUUUUUGCGGGGAAACUUGCAAGUAAAGUUUGGGGGGAGGCGGGCGUCGACCCAACCU
..........((............)..).......((....................)..)..
>X55026.1/77786-77867
GAGAGCCGUAUGAUGGGAAACUAUCACGUACGGUUCGGGAAAAGGUAUAUAUACUGAUAAGAGGUAUACGUAUCUAGUUCAU
..........((............)..)............(.(...............................)..)....
>Z00044.2/84143-84067
AGGAGCUGGAUGAGAAGAAACUCUCACGUCCGGUUCUGUAGUAGAGAUGGAAUUCAGAAACAACCAUCAACUAUAAC
..........((............)..)...........((.............................)..)...
>AF065404.1/6521-6444
UUGAGCCGUAUGUGCUGAAAGGUACAAGUACGGUUCUUAGGGGAGAAAGAGUUGGUAACACCUCUGACUUACCCGACU
..........((............)..)...........((................................)..).
>X73671.1/1293-1367
UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUAAGAGGGGAAAAUGAGUGAUCAUCUACCUAUUCUAAC
..........((............)..)............((.............................)..)
>U77945.1/1848-1919
AACCGCCGUGUACGGAACCGUACGCACGGUGGUGUGAGAGGACGGCGGGUGUGAAUCCGCCUCCUACUCGAU
..........((........)..)............((..............................)..)
>AJ277126.1/35792-35885
GAGAGCCCGGUGCGGUGAAAGUCGCACGCCGGGUUCGGGGAGAACUCUCUGUAACUAAAAUAUUUCGGUAUCACGUUAUGGUUAGUCACUCCAC
..........((............)..).............(.(.........................................)..).....
>Z69899.1/2926-3021
GAGAGCCGUAUGCGGUGAAAGUCGCACGUACGGUUCGGAGGAGAGUUGUUGGUUUCUAAGGUUUCUUUAGACUAAGGACUGGCUGCUUAUCCUACA
..........((............)..)..............((...................................)..).............
>X04465.1/8-84
AGAAGCCGUAUGAAAUGAAAAUAUCAAGUACGGUUUUGUAAAGUGACAAUUUAGGUAACUUAUUUGUCAACUUUUCC
..........((............)..)..............(.(......................)..)......
>X77508.1/2333-2408
GGGAGCGGUAUGAGCCGAGAGGUUCACGUACCGUUCUGCGAGAGGCUGCGGGGGAGGUUCCUGCGGCCUACUCACC
..........((............)..)...........((..............................)..).
>X86563.2/93178-93102
AGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGGGACAGUAAGGAUGACUUAUCUGUCGACUUUUCC
..........((............)..)..............((.......................)..)......
>L36897.1/2659-2743
GAAAGCCGUAUGAUGGGAAACUAUCACGUACGGUUUGGGAAAGGCUCUUUAACACGUGGCAACAUAGGUUAAUUUGCUAUUUCAU
..........((............)..)............(..(................................)..).....
>Z00044.2/45483-45410
AGGAGCCGUAUGAGGUGAAAAUCUCACGUACGGUUCUGGAACGGAGAUUCUUUCAAUUGAAUGACGACCGUAAC
..........((............)..)...........((.............................)..)
>M15176.1/580-656
AGGAGCUGGAUGAGAAGAAACUCUCAUGUCCAGUUUUGUAGUAGAGAUGGAACUAAGAAGGAACCAUCGACUAUAAC
..........((............)..).........(..(................................)..)
>X05422.1/3488-3558
UUGAGCCGUACGAGAUGAAAUUUUCAUAUACGGUUCUCGGAGGGGGAGUCGGGCUAGUUACCUAUCUCAAU
..........((............)..)..........((...........................)..)
>AJ131145.1/1727-1802
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGGAAGCUUGAAAGAGCCUACCCAUCCCGAU
..........((............)..)............((..............................)..)
>AJ277126.1/8230-8302
UUGAGCCGUGUGCGUUGAAAGAUGCAUGCACGGUUCUUAGGGGGGGAAAGCCGGUAACCGUACCUAUCCCAAU
..........((............)..)..........((.............................)..)
>Y18999.2/2881-2957
UUGAGCCGGAUGAGGGGCGACUCUCAUGUCCGGUUCUUAGGGGACGGCGGCGCAGUAAUGCGCUGCUGUUACCCGAC
..........((............)..)...........((................................)..)
>U41288.1/27369-27451
GAGAGCCGUAUGCGGUGAAAGUUGCACGUACGGUUCGGUGGGAGGUUUCUUAUAUCCCUCGUGGAGUAGGCUAUCGACCCAAC
..........((............)..).............(.(..............................)..).....
>X07106.1/1306-1373
UUGAGCUGUACGAGAUGAAAGUCUCAUAUACAGUUCUUAGGGGGGUUUAAUAGUUUACCUAUCUCAAU
..........((............)..)........((..........................)..)
>Z72500.1/3161-3251
GAAAGCCGUAUGAGGGGAAACUUUCACGUACGGUUUGGAGGAAAGUCGGGAAGCUCUAAGGUAUUUGCUAUGAACUCUCGGCUCAUCCUAC
..........((............)..).............(.(......................................)..).....
>U13767.1/4803-4881
GGGAGCCGUGUGCAGCGAAAGUUGCACGCACGGAUCUAACAGAGAGGGACGGGGAAUAAUAUCCCCUCUCGACUCUAAC
........((................)..)...........((................................)..)
>AJ315331.1/53-130
AGGAGCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGUAAUAGCGAUGGGCACAGUGAUGUUAUCAUCGACUAUGAU
..........((............)..)............(.(............................)..)...
>M36911.1/2445-2539
GAGAGCCGUAUGCGGUGAAAGUCGCACGUACGGUUCGGAGGAGAGUUUUUGGUUUCUAAGGUCUAUAUAGACUAAGGACUGGCUGCUUAUCCUAC
..........((............)..)..............((...................................)..)............
>EF165030.1/2861-2955
GAACGCCGUGUGCGGGGAAACUCGCACGCACGGUGUGAAGCGGGGAAAAAUAGCCCCUCCGGGUAAUGCCGAGGGUGACUAUUACCUAUCGCUAU
........((................)..)............((.........................................)..)......
>AY248839.1/1808-1884
GGGAGCGGUGUGAAUCGAGAGGUUCACGCACCGUUCUGCGAGAGGCCGGCUGGUGAAACUCCUCCGGCCUACUCACC
........((................)..).........((...............................)..).
>X71404.1/2822-2898
AGGAGCCGUAUGAGGUGAAAGUCUCAAGUACGGUUUUGAAGACCAGCAGGAUUGGUGACAGUCUUGCUGAGUUUAAU
..........((............)..)...........((................................)..)
>AJ131144.1/1753-1833
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCUGAU
..........((............)..)..............(..(...............................)..)
>X03834.1/1418-1494
GGGAGCCGGAUGAGAAGAAACUCUCAUGUCCGGUUCUGUAGUAGAGAUGGAAUAGGGAAAUAACCAUCAACUAUAAC
..........((............)..)...........((................................)..)
>AF235045.1/658-731
GAAAGCCGUAUUCGAUGAAAGUCGUAUGUACGGCUUGGAGGGAGAUCUUUCAUAUCUUUCGAGAUCCACCCUAC
........((................)..).......(.(..............................)..)
>AB027572.1/1941-1862
AGGAGCCGAAUGAAAUCAAAAUUUCAUGUUCGGUUUUGAAUUAGAGACGUUAAAAAUAAUCAACCAACGUCGACUAUAAC
..........((............)..)...........((...................................)..)
>X57546.1/2817-2907
GAGAGCCGUAUGAUAUGAAAGUAUCACGUACGGUUCGGAGAGGGCUCUCUUAUAUGAUUGUUAUUACAAUCAGAUAGGUUUGCUACUCUAC
..........((............)..)...............(..(................................)..)........
>AJ316582.1/98150-98072
AGGAGCCGUGUGAGAUGAAAGUCUCAUGCACGGUUUUGAAUGAGAGAAAGAAGUGAGGAAUCCUCUUUUCGACUCUGAC
..........((............)..).............(..(..............................)..)
>AJ277126.1/6413-6487
GUGAGCCGUGUGCGAUGAAAGUCGCAAGCACGGUUCUGAUGGGGGGAAAACGAGAGAUCGUCUACCUAUCCAACU
..........((............)..)...........((.............................)..).
>M81726.1/5191-5288
GUGAGCCGUAUGAUGGGCAACUAUCUCCUGCGGUUCGGAGAGGACUCAGCUGUUAGUUAGUACCCCCGUCGGUUUCGGGGUGGACCCUUUUACUCUAU
..............................((.............)..)...........................((................)..)
>AC145820.20/76117-76030
GAGAGCCAAAUGAAUUGAAAGAUUCAUGUUUGGUUCGGGAAGAGAUCAUAGACAUUUUGAAAUGAAUGGAAAGAGAAUCUACUUUCAU
..........((............)..).............(.(..................................)..)......
>DQ787115.1/750-834
GAACGCCGUAUGCGGUGAAAGUCGCACGUACGGUGUGGAGCGGGGGAAAAAUUGGAGAUAACAUCAAAGAUUUACCUAUCGCUAU
..........((............)..)..............(.(..............................)..)......
>AF200692.2/21112-21025
GAGAGCCGGAUGCGCUGAAAGGUGCACGUCCGGUUCGGGGAGGAGAGGCAGGGAAAUAGUCCGACUACGCCCUGCCUCUUACUCUUAC
..........((............)..).............(.(..................................)..)......
>AB042240.3/88332-88259
GAAAGCCGUAUUCGAUGAAAGUCGUAUGUACGGCUUGGAGGGAGAUCUUUCCUAUCUUUCGAGAUCCACCCUAC
........((................)..).......(.(..............................)..)
>AF314856.1/1250-1311
ACGAGCCACAUGCAGGGAAACUUGCACGUGUGGUUCUGGCCGGGGACCCCGGUAUACUGUAC
..........((............)..).........((...................)..)
>FM992111.1/3630-3713
GAACGCCGUAUGCGGUGAAAGUCGCACGUACGGUGUGAGGCGGGGGAAAAGUUGGAGAUAACAUCAAAUUCUUACCUAUCGUAC
..........((............)..)..............(.(..............................)..).....
>AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
..........((............)..)............((..............................)..)
>AJ131147.1/1719-1794
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGAAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
..........((............)..)............((..............................)..)
>AF074613.1/60570-60649
UUGAGCCGUAUGCCGGGAAACUGGCACGUACGGUUCUUAGGGGGCGGUGAUGCAGUAAUGCAUCACUGCUACCCGAUCGU
..........((............)..)............((...............................)..)...
>AJ130737.1/1761-1840
UUGAGCCGUAUGCGGGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGGGAGCUUGCUCGAAAGAGCCUACCUAUCCCGAU
..........((............)..)............(.(.................................)..)
>Z00028.1/5121-5234
GAGAGCACAGUACGAUGAAAGUUGUAAGCUGUGUUCGGGGGGGAGUUAUUGCCUAUCGUUGUCCUCUAUGGUAGAACCCGUCGGGGAGGCCUGAGAGGCGGUGGUUUACCCUGU
..........((............)..).............................(...(........................)..)........................
>AM489440.1/2183-2254
AACCGCCGUAUGCGGAGCCGCAUGUACGGUGGUGUGAGAGGACGGCGGGAGUGAUCCCGCCUCCUACUCGAU
........((............)..)..........((..............................)..)
>AJ277126.1/9249-9325
AGGAGCCGUAUGAAUGGAGACAUUCACGUACGGUUUUGGAGUAGCAGGAUAUAUGGUAACAUGUACUUGACUAUAAG
..........((............)..)...........((.............................)..)...
>AM087200.3/1962-1851
GAAAGCCGUGUGCAAUGAAAAGUGCAAGCACGGCUUGGGGAGGGAUCUUUACUUGUUUAUUUAAUUUAAGAUUAACAUUUAUUUUAUUUAACAAGGAACUUAUCUACUCCAU
..........((............)..)................(.(....................................................)..).........
>U41288.1/3118-3192
UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUACCGGGGGAAAGCUUGAGAGAGCCUACCUAUCGGAAC
..........((............)..)..........((...............................)..)
>AJ316582.1/9914-9993
AGGAGCCGAAUGAAACCAAAGUUUCAUGUUCGGUUUUGAAUUAGAGACGUUAAAAAUAAUGAAUCGACGUCGACUAUAAC
..........((............)..)...........((...................................)..)
>AJ277126.1/2879-2953
UUCAGCCGUGUGCGGUGAAAGUCGCACGCACGGUUGUGAGGGGGGGAAAAUCUGUGAAGAUCUACCUAUCCCGAU
........((................)..).........((..............................)..)
>Z00044.2/12705-12618
GAGAGCCAAAUGAAUCGAAAGAUUCAUGUUUGGUUCGGGAAGGGAUUAUGGAAUUUUGGAAAGGAAUGGAAAAAUAAUCUACUUUCAU
..........((............)..)...............((.............................)..)..........
>X04336.1/3210-3313
GAGAGCCGUAUGCAGGGAAACUUGCACGUACGGUUCGGAGGGAGGUCUCUCGUUGCCAGUUCUAAUCUAUUGAUAAGGAUCACGGUGCGGGUUAUCGACCCUAC
..........((............)..).......................((...............................)..)................
>X17375.2/29364-29438
UUGAGCCGUGUGCGGUGAAAGUCGCAUGCACGGUUCUACUGGGGGGAAAGCCUGAGAGGGCCUACCUAUCCAACU
..........((............)..)...........((.............................)..).
>AF243383.1/10225-10322
CAGAGCCGUAUACUCCGAGAGGGGUACGUACGGUUCCCGAAGAGGGUGGUGCAAACCAGUCACAGUAAUGUGAACAAGGCGGUACCUCCCUACUUCAC
..........((............)..)......................(...(........................)..)...............
>Y08501.2/169475-169584
GUGAGCCUAGUGAUAGGAGACUAUCUAGCUUGGUUCGGAGAGCACUUGUUGGGUUAAAAACUUUUUUUGUUGCUAAAUGUUACAGCCUAAAUGCUGAACUAUUGACUCUA
..........((............)..)........................(......(..............................)..)................
>M68929.1/41010-41093
GUGAGCCGUGUAAUGGGCAACUAUUUCGCACGGUUCGGAGGGCACUUCAGUAAGCCCUACAAGGGCUGAAGUCUUGACCCCUAU
..........((............)..).............(.(..............................)..)......
>V00712.1/1227-1289
GAGAGCUUUUUGCGGGGAAACUUGCAAGUCAAGUUUGGGGGGAGGCGGGCGUCGACCCAACCU
..........((............)..).......((....................)..)..
3 ((Y)NN)R
((N)NR)Y
R(AN)N
 49 55.1
>AJ277126.1/8230-8302
UUGAGCCGUGUGCGUUGAAAGAUGCAUGCACGGUUCUUAGGGGGGGAAAGCCGGUAACCGUACCUAUCCCAAU
..........((....(..)....)..)..........((.............................)..)
>X01088.1/1893-1955
GAGAGCUUUUUGCGGGGAAACUUGCAAGUAAAGUUUGGGGGGAGGCGGGCGUCGACCCAACCU
..........((....(..)....)..).......((....................)..)..
>M15176.1/580-656
AGGAGCUGGAUGAGAAGAAACUCUCAUGUCCAGUUUUGUAGUAGAGAUGGAACUAAGAAGGAACCAUCGACUAUAAC
..........((....(..)....)..).........(..(................................)..)
>Z00044.2/84143-84067
AGGAGCUGGAUGAGAAGAAACUCUCACGUCCGGUUCUGUAGUAGAGAUGGAAUUCAGAAACAACCAUCAACUAUAAC
..........((....(..)....)..)...........((.............................)..)...
>X71404.1/2822-2898
AGGAGCCGUAUGAGGUGAAAGUCUCAAGUACGGUUUUGAAGACCAGCAGGAUUGGUGACAGUCUUGCUGAGUUUAAU
..........((....(..)....)..)...........((................................)..)
>U41288.1/27369-27451
GAGAGCCGUAUGCGGUGAAAGUUGCACGUACGGUUCGGUGGGAGGUUUCUUAUAUCCCUCGUGGAGUAGGCUAUCGACCCAAC
..........((....(..)....)..).............(.(..............................)..).....
>Z69899.1/2926-3021
GAGAGCCGUAUGCGGUGAAAGUCGCACGUACGGUUCGGAGGAGAGUUGUUGGUUUCUAAGGUUUCUUUAGACUAAGGACUGGCUGCUUAUCCUACA
..........((....(..)....)..)..............((...................................)..).............
>X17395.1/1934-1994
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGGGGGAGGCGGGCGUCGACCCUAC
..........((....(..)....)..).......((....................)..)
>X04465.1/8-84
AGAAGCCGUAUGAAAUGAAAAUAUCAAGUACGGUUUUGUAAAGUGACAAUUUAGGUAACUUAUUUGUCAACUUUUCC
..........((....(..)....)..)..............(.(......................)..)......
>AJ315331.1/53-130
AGGAGCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGUAAUAGCGAUGGGCACAGUGAUGUUAUCAUCGACUAUGAU
..........((....(..)....)..)............(.(............................)..)...
>AF065404.1/6521-6444
UUGAGCCGUAUGUGCUGAAAGGUACAAGUACGGUUCUUAGGGGAGAAAGAGUUGGUAACACCUCUGACUUACCCGACU
..........((....(..)....)..)...........((................................)..).
>AF029891.1/4522-4594
UUGAGCCGUAUGCCAUGAAAGUGGCACGUACGGUUCUGAGGGGGGGAAAGUCUGAGAGGACCUACCUAUCCCA
..........((....(..)....)..)..............((.....................)..)....
>X05422.1/3488-3558
UUGAGCCGUACGAGAUGAAAUUUUCAUAUACGGUUCUCGGAGGGGGAGUCGGGCUAGUUACCUAUCUCAAU
..........((....(..)....)..)..........((...........................)..)
>X62341.1/1274-1336
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGGGGGAGACGGGCGUCGACCCAACCU
..........((....(..)....)..)........((...................)..)..
>X03834.1/1418-1494
GGGAGCCGGAUGAGAAGAAACUCUCAUGUCCGGUUCUGUAGUAGAGAUGGAAUAGGGAAAUAACCAUCAACUAUAAC
..........((....(..)....)..)...........((................................)..)
>AJ316582.1/78387-78450
UUGAGCUGUACGAGAUGAAAGUCUCAUAUACGGUUCUCAGAGGGGGAGUUCCGCCUAUCUCAAU
..........((....(..)....)..)........((......................)..)
>X02819.1/3326-3410
GAGAGCCGUAUAAUUACGAAAGUAUCCCGUACGGUUCGGUGACGAGCCGUGUCAACCCUGCAAAGGGAAUGCGUCUUAGUUCAAU
..........(.(....(..)....)..).............((................................)..).....
>AJ131144.1/1753-1833
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCUGAU
..........((....(..)....)..)..............(..(...............................)..)
>M36911.1/2445-2539
GAGAGCCGUAUGCGGUGAAAGUCGCACGUACGGUUCGGAGGAGAGUUUUUGGUUUCUAAGGUCUAUAUAGACUAAGGACUGGCUGCUUAUCCUAC
..........((....(..)....)..)..............((...................................)..)............
>AJ316582.1/98150-98072
AGGAGCCGUGUGAGAUGAAAGUCUCAUGCACGGUUUUGAAUGAGAGAAAGAAGUGAGGAAUCCUCUUUUCGACUCUGAC
..........((....(..)....)..).............(..(..............................)..)
>X07106.1/2899-2978
UUGAGCCGGAUGAUGAAAAAUUAUCAUGUCCGGUUCUUUCGGGGGAUGAAUUGAAUCUAUAAGAAUUCACCUAUCCUAAU
..........((....(..)....)..)..............((..........................)..)......
>Z72500.1/3161-3251
GAAAGCCGUAUGAGGGGAAACUUUCACGUACGGUUUGGAGGAAAGUCGGGAAGCUCUAAGGUAUUUGCUAUGAACUCUCGGCUCAUCCUAC
..........((....(..)....)..).............(.(......................................)..).....
>V00694.1/5204-5294
GAGAGCCGUAUGAUAUGAAAGUAUCACGUACGGUUCGGAGAGGGCUCUUUUAUAUGAAUGUUAUUACAUUCAGAUAGGUUUGCUACUCUAC
..........((....(..)....)..)...............(..(................................)..)........
>L36897.1/2659-2743
GAAAGCCGUAUGAUGGGAAACUAUCACGUACGGUUUGGGAAAGGCUCUUUAACACGUGGCAACAUAGGUUAAUUUGCUAUUUCAU
..........((....(..)....)..)............(..(................................)..).....
>AF314856.1/1250-1311
ACGAGCCACAUGCAGGGAAACUUGCACGUGUGGUUCUGGCCGGGGACCCCGGUAUACUGUAC
..........((....(..)....)..).........((...................)..)
>AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
..........((....(..)....)..)............((..............................)..)
>AM489440.1/2183-2254
AACCGCCGUAUGCGGAGCCGCAUGUACGGUGGUGUGAGAGGACGGCGGGAGUGAUCCCGCCUCCUACUCGAU
........((....(..)....)..)..........((..............................)..)
>Z00044.2/45483-45410
AGGAGCCGUAUGAGGUGAAAAUCUCACGUACGGUUCUGGAACGGAGAUUCUUUCAAUUGAAUGACGACCGUAAC
..........((....(..)....)..)...........((.............................)..)
>AJ131145.1/1727-1802
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGGAAGCUUGAAAGAGCCUACCCAUCCCGAU
..........((....(..)....)..)............((..............................)..)
>X55026.1/77786-77867
GAGAGCCGUAUGAUGGGAAACUAUCACGUACGGUUCGGGAAAAGGUAUAUAUACUGAUAAGAGGUAUACGUAUCUAGUUCAU
..........((....(..)....)..)............(.(...............................)..)....
>AF200692.2/21112-21025
GAGAGCCGGAUGCGCUGAAAGGUGCACGUCCGGUUCGGGGAGGAGAGGCAGGGAAAUAGUCCGACUACGCCCUGCCUCUUACUCUUAC
..........((....(..)....)..).............(.(..................................)..)......
>AC145820.20/76117-76030
GAGAGCCAAAUGAAUUGAAAGAUUCAUGUUUGGUUCGGGAAGAGAUCAUAGACAUUUUGAAAUGAAUGGAAAGAGAAUCUACUUUCAU
..........((....(..)....)..).............(.(..................................)..)......
>X57546.1/2817-2907
GAGAGCCGUAUGAUAUGAAAGUAUCACGUACGGUUCGGAGAGGGCUCUCUUAUAUGAUUGUUAUUACAAUCAGAUAGGUUUGCUACUCUAC
..........((....(..)....)..)...............(..(................................)..)........
>AJ130737.1/1761-1840
UUGAGCCGUAUGCGGGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGGGAGCUUGCUCGAAAGAGCCUACCUAUCCCGAU
..........((....(..)....)..)............(.(.................................)..)
>FM992111.1/3630-3713
GAACGCCGUAUGCGGUGAAAGUCGCACGUACGGUGUGAGGCGGGGGAAAAGUUGGAGAUAACAUCAAAUUCUUACCUAUCGUAC
..........((....(..)....)..)..............(.(..............................)..).....
>X77508.1/2333-2408
GGGAGCGGUAUGAGCCGAGAGGUUCACGUACCGUUCUGCGAGAGGCUGCGGGGGAGGUUCCUGCGGCCUACUCACC
..........((....(..)....)..)...........((..............................)..).
>AJ131147.1/1719-1794
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGAAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
..........((....(..)....)..)............((..............................)..)
>Z00044.2/23180-23109
UUGAGCCGGAUGAAAGGAAACUUUCACGUCCGAUUUUGAAGGGGGGGAGAUCCUAUAGAAUCCUAUCCCAAU
..........((....(..)....)..)..........((............................)..)
>AJ277126.1/9249-9325
AGGAGCCGUAUGAAUGGAGACAUUCACGUACGGUUUUGGAGUAGCAGGAUAUAUGGUAACAUGUACUUGACUAUAAG
..........((....(..)....)..)...........((.............................)..)...
>DQ787115.1/750-834
GAACGCCGUAUGCGGUGAAAGUCGCACGUACGGUGUGGAGCGGGGGAAAAAUUGGAGAUAACAUCAAAGAUUUACCUAUCGCUAU
..........((....(..)....)..)..............(.(..............................)..)......
>V00712.1/1227-1289
GAGAGCUUUUUGCGGGGAAACUUGCAAGUCAAGUUUGGGGGGAGGCGGGCGUCGACCCAACCU
..........((....(..)....)..).......((....................)..)..
>AF074613.1/60570-60649
UUGAGCCGUAUGCCGGGAAACUGGCACGUACGGUUCUUAGGGGGCGGUGAUGCAGUAAUGCAUCACUGCUACCCGAUCGU
..........((....(..)....)..)............((...............................)..)...
>X17375.2/29364-29438
UUGAGCCGUGUGCGGUGAAAGUCGCAUGCACGGUUCUACUGGGGGGAAAGCCUGAGAGGGCCUACCUAUCCAACU
..........((....(..)....)..)...........((.............................)..).
>X86563.2/93178-93102
AGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGGGACAGUAAGGAUGACUUAUCUGUCGACUUUUCC
..........((....(..)....)..)..............((.......................)..)......
>AJ277126.1/33096-33168
GCGAGCCGUAUGAUGGGAAACUAUCACGUACGGUUCUGAGGGCAAGGUAUAUUCUAAAUGCCUUGACCCCUAC
..........((....(..)....)..)..........((.............................)..)
>AJ277126.1/35792-35885
GAGAGCCCGGUGCGGUGAAAGUCGCACGCCGGGUUCGGGGAGAACUCUCUGUAACUAAAAUAUUUCGGUAUCACGUUAUGGUUAGUCACUCCAC
..........((....(..)....)..).............(.(.........................................)..).....
>Z00044.2/12705-12618
GAGAGCCAAAUGAAUCGAAAGAUUCAUGUUUGGUUCGGGAAGGGAUUAUGGAAUUUUGGAAAGGAAUGGAAAAAUAAUCUACUUUCAU
..........((....(..)....)..)...............((.............................)..)..........
>X73671.1/1293-1367
UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUAAGAGGGGAAAAUGAGUGAUCAUCUACCUAUUCUAAC
..........((....(..)....)..)............((.............................)..)
>X07106.1/1306-1373
UUGAGCUGUACGAGAUGAAAGUCUCAUAUACAGUUCUUAGGGGGGUUUAAUAGUUUACCUAUCUCAAU
..........((....(..)....)..)........((..........................)..)
4 ((Y)NN)R
((N)NR)Y
R(AN)N
A(G(C))
 40 44.9
>AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
...(.(....((....(..)....)..)....).).....((..............................)..)
>L36897.1/2659-2743
GAAAGCCGUAUGAUGGGAAACUAUCACGUACGGUUUGGGAAAGGCUCUUUAACACGUGGCAACAUAGGUUAAUUUGCUAUUUCAU
...(.(....((....(..)....)..)....).).....(..(................................)..).....
>AJ277126.1/33096-33168
GCGAGCCGUAUGAUGGGAAACUAUCACGUACGGUUCUGAGGGCAAGGUAUAUUCUAAAUGCCUUGACCCCUAC
...(.(....((....(..)....)..)....))....((.............................)..)
>M15176.1/580-656
AGGAGCUGGAUGAGAAGAAACUCUCAUGUCCAGUUUUGUAGUAGAGAUGGAACUAAGAAGGAACCAUCGACUAUAAC
...(.(....((....(..)....)..)....))...(..(................................)..)
>AJ131144.1/1753-1833
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCUGAU
...(.(....((....(..)....)..)....).).......(..(...............................)..)
>U41288.1/27369-27451
GAGAGCCGUAUGCGGUGAAAGUUGCACGUACGGUUCGGUGGGAGGUUUCUUAUAUCCCUCGUGGAGUAGGCUAUCGACCCAAC
...(.(....((....(..)....)..)....).)......(.(..............................)..).....
>X01088.1/1893-1955
GAGAGCUUUUUGCGGGGAAACUUGCAAGUAAAGUUUGGGGGGAGGCGGGCGUCGACCCAACCU
...(.(....((....(..)....)..)...))..((....................)..)..
>X73671.1/1293-1367
UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUAAGAGGGGAAAAUGAGUGAUCAUCUACCUAUUCUAAC
...(.(....((....(..)....)..)....).).....((.............................)..)
>AF074613.1/60570-60649
UUGAGCCGUAUGCCGGGAAACUGGCACGUACGGUUCUUAGGGGGCGGUGAUGCAGUAAUGCAUCACUGCUACCCGAUCGU
...(.(....((....(..)....)..)....).).....((...............................)..)...
>X71404.1/2822-2898
AGGAGCCGUAUGAGGUGAAAGUCUCAAGUACGGUUUUGAAGACCAGCAGGAUUGGUGACAGUCUUGCUGAGUUUAAU
...(.(....((....(..)....)..)....)).....((................................)..)
>X55026.1/77786-77867
GAGAGCCGUAUGAUGGGAAACUAUCACGUACGGUUCGGGAAAAGGUAUAUAUACUGAUAAGAGGUAUACGUAUCUAGUUCAU
...(.(....((....(..)....)..)....).).....(.(...............................)..)....
>Z00044.2/84143-84067
AGGAGCUGGAUGAGAAGAAACUCUCACGUCCGGUUCUGUAGUAGAGAUGGAAUUCAGAAACAACCAUCAACUAUAAC
...(.(....((....(..)....)..)....)).....((.............................)..)...
>AF314856.1/1250-1311
ACGAGCCACAUGCAGGGAAACUUGCACGUGUGGUUCUGGCCGGGGACCCCGGUAUACUGUAC
...(.(....((....(..)....)..)....))...((...................)..)
>X86563.2/93178-93102
AGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGGGACAGUAAGGAUGACUUAUCUGUCGACUUUUCC
...(.(....((....(..)....)..)....).).......((.......................)..)......
>X02819.1/3326-3410
GAGAGCCGUAUAAUUACGAAAGUAUCCCGUACGGUUCGGUGACGAGCCGUGUCAACCCUGCAAAGGGAAUGCGUCUUAGUUCAAU
...(.(....(.(....(..)....)..)....).)......((................................)..).....
>Z69899.1/2926-3021
GAGAGCCGUAUGCGGUGAAAGUCGCACGUACGGUUCGGAGGAGAGUUGUUGGUUUCUAAGGUUUCUUUAGACUAAGGACUGGCUGCUUAUCCUACA
...(.(....((....(..)....)..)....).).......((...................................)..).............
>AF065404.1/6521-6444
UUGAGCCGUAUGUGCUGAAAGGUACAAGUACGGUUCUUAGGGGAGAAAGAGUUGGUAACACCUCUGACUUACCCGACU
...(.(....((....(..)....)..)....)).....((................................)..).
>X57546.1/2817-2907
GAGAGCCGUAUGAUAUGAAAGUAUCACGUACGGUUCGGAGAGGGCUCUCUUAUAUGAUUGUUAUUACAAUCAGAUAGGUUUGCUACUCUAC
...(.(....((....(..)....)..)....).)........(..(................................)..)........
>Z00044.2/12705-12618
GAGAGCCAAAUGAAUCGAAAGAUUCAUGUUUGGUUCGGGAAGGGAUUAUGGAAUUUUGGAAAGGAAUGGAAAAAUAAUCUACUUUCAU
...(.(....((....(..)....)..)....).)........((.............................)..)..........
>AJ316582.1/98150-98072
AGGAGCCGUGUGAGAUGAAAGUCUCAUGCACGGUUUUGAAUGAGAGAAAGAAGUGAGGAAUCCUCUUUUCGACUCUGAC
...(.(....((....(..)....)..)....).)......(..(..............................)..)
>Z00044.2/45483-45410
AGGAGCCGUAUGAGGUGAAAAUCUCACGUACGGUUCUGGAACGGAGAUUCUUUCAAUUGAAUGACGACCGUAAC
...(.(....((....(..)....)..)....)).....((.............................)..)
>AJ277126.1/9249-9325
AGGAGCCGUAUGAAUGGAGACAUUCACGUACGGUUUUGGAGUAGCAGGAUAUAUGGUAACAUGUACUUGACUAUAAG
...(.(....((....(..)....)..)....)).....((.............................)..)...
>AJ131145.1/1727-1802
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGGAAGCUUGAAAGAGCCUACCCAUCCCGAU
...(.(....((....(..)....)..)....).).....((..............................)..)
>AF200692.2/21112-21025
GAGAGCCGGAUGCGCUGAAAGGUGCACGUCCGGUUCGGGGAGGAGAGGCAGGGAAAUAGUCCGACUACGCCCUGCCUCUUACUCUUAC
...(.(....((....(..)....)..)....).)......(.(..................................)..)......
>X17395.1/1934-1994
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGGGGGAGGCGGGCGUCGACCCUAC
...(.(....((....(..)....)..)...))..((....................)..)
>M36911.1/2445-2539
GAGAGCCGUAUGCGGUGAAAGUCGCACGUACGGUUCGGAGGAGAGUUUUUGGUUUCUAAGGUCUAUAUAGACUAAGGACUGGCUGCUUAUCCUAC
...(.(....((....(..)....)..)....).).......((...................................)..)............
>Z72500.1/3161-3251
GAAAGCCGUAUGAGGGGAAACUUUCACGUACGGUUUGGAGGAAAGUCGGGAAGCUCUAAGGUAUUUGCUAUGAACUCUCGGCUCAUCCUAC
...(.(....((....(..)....)..)....).)......(.(......................................)..).....
>X77508.1/2333-2408
GGGAGCGGUAUGAGCCGAGAGGUUCACGUACCGUUCUGCGAGAGGCUGCGGGGGAGGUUCCUGCGGCCUACUCACC
...(.(....((....(..)....)..)....)).....((..............................)..).
>X03834.1/1418-1494
GGGAGCCGGAUGAGAAGAAACUCUCAUGUCCGGUUCUGUAGUAGAGAUGGAAUAGGGAAAUAACCAUCAACUAUAAC
...(.(....((....(..)....)..)....)).....((................................)..)
>Z00044.2/23180-23109
UUGAGCCGGAUGAAAGGAAACUUUCACGUCCGAUUUUGAAGGGGGGGAGAUCCUAUAGAAUCCUAUCCCAAU
...(.(....((....(..)....)..)....))....((............................)..)
>X62341.1/1274-1336
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGGGGGAGACGGGCGUCGACCCAACCU
...(.(....((....(..)....)..)...))...((...................)..)..
>X05422.1/3488-3558
UUGAGCCGUACGAGAUGAAAUUUUCAUAUACGGUUCUCGGAGGGGGAGUCGGGCUAGUUACCUAUCUCAAU
...(.(....((....(..)....)..)....).)...((...........................)..)
>AC145820.20/76117-76030
GAGAGCCAAAUGAAUUGAAAGAUUCAUGUUUGGUUCGGGAAGAGAUCAUAGACAUUUUGAAAUGAAUGGAAAGAGAAUCUACUUUCAU
...(.(....((....(..)....)..)....).)......(.(..................................)..)......
>AJ131147.1/1719-1794
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGAAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
...(.(....((....(..)....)..)....).).....((..............................)..)
>AF029891.1/4522-4594
UUGAGCCGUAUGCCAUGAAAGUGGCACGUACGGUUCUGAGGGGGGGAAAGUCUGAGAGGACCUACCUAUCCCA
...(.(....((....(..)....)..)....).).......((.....................)..)....
>V00694.1/5204-5294
GAGAGCCGUAUGAUAUGAAAGUAUCACGUACGGUUCGGAGAGGGCUCUUUUAUAUGAAUGUUAUUACAUUCAGAUAGGUUUGCUACUCUAC
...(.(....((....(..)....)..)....).)........(..(................................)..)........
>X04465.1/8-84
AGAAGCCGUAUGAAAUGAAAAUAUCAAGUACGGUUUUGUAAAGUGACAAUUUAGGUAACUUAUUUGUCAACUUUUCC
...(.(....((....(..)....)..)....)..)......(.(......................)..)......
>X07106.1/2899-2978
UUGAGCCGGAUGAUGAAAAAUUAUCAUGUCCGGUUCUUUCGGGGGAUGAAUUGAAUCUAUAAGAAUUCACCUAUCCUAAU
...(.(....((....(..)....)..)....).).......((..........................)..)......
>AJ315331.1/53-130
AGGAGCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGUAAUAGCGAUGGGCACAGUGAUGUUAUCAUCGACUAUGAU
...(.(....((....(..)....)..)....).).....(.(............................)..)...
>X17375.2/29364-29438
UUGAGCCGUGUGCGGUGAAAGUCGCAUGCACGGUUCUACUGGGGGGAAAGCCUGAGAGGGCCUACCUAUCCAACU
...(.(....((....(..)....)..)....).)....((.............................)..).

>Z00044.2/23180-23109
UUGAGCCGGAUGAAAGGAAACUUUCACGUCCGAUUUUGAAGGGGGGGAGAUCCUAUAGAAUCCUAUCCCAAU
..........((............)..)............................................
..........((............)..)..........((............................)..)
..........((....(..)....)..)..........((............................)..)
...(.(....((....(..)....)..)....))....((............................)..)
>AJ316582.1/98150-98072
AGGAGCCGUGUGAGAUGAAAGUCUCAUGCACGGUUUUGAAUGAGAGAAAGAAGUGAGGAAUCCUCUUUUCGACUCUGAC
..........((............)..)...................................................
..........((............)..).............(..(..............................)..)
..........((....(..)....)..).............(..(..............................)..)
...(.(....((....(..)....)..)....).)......(..(..............................)..)
>AJ131144.1/1753-1833
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCUGAU
..........((............)..).....................................................
..........((............)..)..............(..(...............................)..)
..........((....(..)....)..)..............(..(...............................)..)
...(.(....((....(..)....)..)....).).......(..(...............................)..)
>AF029891.1/4522-4594
UUGAGCCGUAUGCCAUGAAAGUGGCACGUACGGUUCUGAGGGGGGGAAAGUCUGAGAGGACCUACCUAUCCCA
..........((............)..).............................................
..........((............)..)..............((.....................)..)....
..........((....(..)....)..)..............((.....................)..)....
...(.(....((....(..)....)..)....).).......((.....................)..)....
>X07106.1/2899-2978
UUGAGCCGGAUGAUGAAAAAUUAUCAUGUCCGGUUCUUUCGGGGGAUGAAUUGAAUCUAUAAGAAUUCACCUAUCCUAAU
..........((............)..)....................................................
..........((............)..)..............((..........................)..)......
..........((....(..)....)..)..............((..........................)..)......
...(.(....((....(..)....)..)....).).......((..........................)..)......
>X01088.1/1893-1955
GAGAGCUUUUUGCGGGGAAACUUGCAAGUAAAGUUUGGGGGGAGGCGGGCGUCGACCCAACCU
..........((............)..)...................................
..........((............)..).......((....................)..)..
..........((....(..)....)..).......((....................)..)..
...(.(....((....(..)....)..)...))..((....................)..)..
>AF314856.1/1250-1311
ACGAGCCACAUGCAGGGAAACUUGCACGUGUGGUUCUGGCCGGGGACCCCGGUAUACUGUAC
..........((............)..)..................................
..........((............)..).........((...................)..)
..........((....(..)....)..).........((...................)..)
...(.(....((....(..)....)..)....))...((...................)..)
>Z00044.2/45483-45410
AGGAGCCGUAUGAGGUGAAAAUCUCACGUACGGUUCUGGAACGGAGAUUCUUUCAAUUGAAUGACGACCGUAAC
..........((............)..)..............................................
..........((............)..)...........((.............................)..)
..........((....(..)....)..)...........((.............................)..)
...(.(....((....(..)....)..)....)).....((.............................)..)
>X71404.1/2822-2898
AGGAGCCGUAUGAGGUGAAAGUCUCAAGUACGGUUUUGAAGACCAGCAGGAUUGGUGACAGUCUUGCUGAGUUUAAU
..........((............)..).................................................
..........((............)..)...........((................................)..)
..........((....(..)....)..)...........((................................)..)
...(.(....((....(..)....)..)....)).....((................................)..)
>X73671.1/1293-1367
UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUAAGAGGGGAAAAUGAGUGAUCAUCUACCUAUUCUAAC
..........((............)..)...............................................
..........((............)..)............((.............................)..)
..........((....(..)....)..)............((.............................)..)
...(.(....((....(..)....)..)....).).....((.............................)..)
>X55026.1/77786-77867
GAGAGCCGUAUGAUGGGAAACUAUCACGUACGGUUCGGGAAAAGGUAUAUAUACUGAUAAGAGGUAUACGUAUCUAGUUCAU
..........((............)..)......................................................
..........((............)..)............(.(...............................)..)....
..........((....(..)....)..)............(.(...............................)..)....
...(.(....((....(..)....)..)....).).....(.(...............................)..)....
>AF074613.1/60570-60649
UUGAGCCGUAUGCCGGGAAACUGGCACGUACGGUUCUUAGGGGGCGGUGAUGCAGUAAUGCAUCACUGCUACCCGAUCGU
..........((............)..)....................................................
..........((............)..)............((...............................)..)...
..........((....(..)....)..)............((...............................)..)...
...(.(....((....(..)....)..)....).).....((...............................)..)...
>X86563.2/93178-93102
AGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGGGACAGUAAGGAUGACUUAUCUGUCGACUUUUCC
..........((............)..).................................................
..........((............)..)..............((.......................)..)......
..........((....(..)....)..)..............((.......................)..)......
...(.(....((....(..)....)..)....).).......((.......................)..)......
>V00694.1/5204-5294
GAGAGCCGUAUGAUAUGAAAGUAUCACGUACGGUUCGGAGAGGGCUCUUUUAUAUGAAUGUUAUUACAUUCAGAUAGGUUUGCUACUCUAC
..........((............)..)...............................................................
..........((............)..)...............(..(................................)..)........
..........((....(..)....)..)...............(..(................................)..)........
...(.(....((....(..)....)..)....).)........(..(................................)..)........
>Z00044.2/84143-84067
AGGAGCUGGAUGAGAAGAAACUCUCACGUCCGGUUCUGUAGUAGAGAUGGAAUUCAGAAACAACCAUCAACUAUAAC
..........((............)..).................................................
..........((............)..)...........((.............................)..)...
..........((....(..)....)..)...........((.............................)..)...
...(.(....((....(..)....)..)....)).....((.............................)..)...
>X17395.1/1934-1994
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGGGGGAGGCGGGCGUCGACCCUAC
..........((............)..).................................
..........((............)..).......((....................)..)
..........((....(..)....)..).......((....................)..)
...(.(....((....(..)....)..)...))..((....................)..)
>X05422.1/3488-3558
UUGAGCCGUACGAGAUGAAAUUUUCAUAUACGGUUCUCGGAGGGGGAGUCGGGCUAGUUACCUAUCUCAAU
..........((............)..)...........................................
..........((............)..)..........((...........................)..)
..........((....(..)....)..)..........((...........................)..)
...(.(....((....(..)....)..)....).)...((...........................)..)
>X17375.2/29364-29438
UUGAGCCGUGUGCGGUGAAAGUCGCAUGCACGGUUCUACUGGGGGGAAAGCCUGAGAGGGCCUACCUAUCCAACU
..........((............)..)...............................................
..........((............)..)...........((.............................)..).
..........((....(..)....)..)...........((.............................)..).
...(.(....((....(..)....)..)....).)....((.............................)..).
>Z69899.1/2926-3021
GAGAGCCGUAUGCGGUGAAAGUCGCACGUACGGUUCGGAGGAGAGUUGUUGGUUUCUAAGGUUUCUUUAGACUAAGGACUGGCUGCUUAUCCUACA
..........((............)..)....................................................................
..........((............)..)..............((...................................)..).............
..........((....(..)....)..)..............((...................................)..).............
...(.(....((....(..)....)..)....).).......((...................................)..).............
>AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
..........((............)..)................................................
..........((............)..)............((..............................)..)
..........((....(..)....)..)............((..............................)..)
...(.(....((....(..)....)..)....).).....((..............................)..)
>AJ277126.1/33096-33168
GCGAGCCGUAUGAUGGGAAACUAUCACGUACGGUUCUGAGGGCAAGGUAUAUUCUAAAUGCCUUGACCCCUAC
..........((............)..).............................................
..........((............)..)..........((.............................)..)
..........((....(..)....)..)..........((.............................)..)
...(.(....((....(..)....)..)....))....((.............................)..)
>AF065404.1/6521-6444
UUGAGCCGUAUGUGCUGAAAGGUACAAGUACGGUUCUUAGGGGAGAAAGAGUUGGUAACACCUCUGACUUACCCGACU
..........((............)..)..................................................
..........((............)..)...........((................................)..).
..........((....(..)....)..)...........((................................)..).
...(.(....((....(..)....)..)....)).....((................................)..).
>M36911.1/2445-2539
GAGAGCCGUAUGCGGUGAAAGUCGCACGUACGGUUCGGAGGAGAGUUUUUGGUUUCUAAGGUCUAUAUAGACUAAGGACUGGCUGCUUAUCCUAC
..........((............)..)...................................................................
..........((............)..)..............((...................................)..)............
..........((....(..)....)..)..............((...................................)..)............
...(.(....((....(..)....)..)....).).......((...................................)..)............
>X03834.1/1418-1494
GGGAGCCGGAUGAGAAGAAACUCUCAUGUCCGGUUCUGUAGUAGAGAUGGAAUAGGGAAAUAACCAUCAACUAUAAC
..........((............)..).................................................
..........((............)..)...........((................................)..)
..........((....(..)....)..)...........((................................)..)
...(.(....((....(..)....)..)....)).....((................................)..)
>AJ131145.1/1727-1802
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGGAAGCUUGAAAGAGCCUACCCAUCCCGAU
..........((............)..)................................................
..........((............)..)............((..............................)..)
..........((....(..)....)..)............((..............................)..)
...(.(....((....(..)....)..)....).).....((..............................)..)
>L36897.1/2659-2743
GAAAGCCGUAUGAUGGGAAACUAUCACGUACGGUUUGGGAAAGGCUCUUUAACACGUGGCAACAUAGGUUAAUUUGCUAUUUCAU
..........((............)..).........................................................
..........((............)..)............(..(................................)..).....
..........((....(..)....)..)............(..(................................)..).....
...(.(....((....(..)....)..)....).).....(..(................................)..).....
>X62341.1/1274-1336
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGGGGGAGACGGGCGUCGACCCAACCU
..........((............)..)...................................
..........((............)..)........((...................)..)..
..........((....(..)....)..)........((...................)..)..
...(.(....((....(..)....)..)...))...((...................)..)..
>M15176.1/580-656
AGGAGCUGGAUGAGAAGAAACUCUCAUGUCCAGUUUUGUAGUAGAGAUGGAACUAAGAAGGAACCAUCGACUAUAAC
..........((............)..).................................................
..........((............)..).........(..(................................)..)
..........((....(..)....)..).........(..(................................)..)
...(.(....((....(..)....)..)....))...(..(................................)..)
>AJ315331.1/53-130
AGGAGCCGUAUGAGAUGAAAAUCUCACGUACGGUUCUGUAAUAGCGAUGGGCACAGUGAUGUUAUCAUCGACUAUGAU
..........((............)..)..................................................
..........((............)..)............(.(............................)..)...
..........((....(..)....)..)............(.(............................)..)...
...(.(....((....(..)....)..)....).).....(.(............................)..)...
>X57546.1/2817-2907
GAGAGCCGUAUGAUAUGAAAGUAUCACGUACGGUUCGGAGAGGGCUCUCUUAUAUGAUUGUUAUUACAAUCAGAUAGGUUUGCUACUCUAC
..........((............)..)...............................................................
..........((............)..)...............(..(................................)..)........
..........((....(..)....)..)...............(..(................................)..)........
...(.(....((....(..)....)..)....).)........(..(................................)..)........
>X04465.1/8-84
AGAAGCCGUAUGAAAUGAAAAUAUCAAGUACGGUUUUGUAAAGUGACAAUUUAGGUAACUUAUUUGUCAACUUUUCC
..........((............)..).................................................
..........((............)..)..............(.(......................)..)......
..........((....(..)....)..)..............(.(......................)..)......
...(.(....((....(..)....)..)....)..)......(.(......................)..)......
>X77508.1/2333-2408
GGGAGCGGUAUGAGCCGAGAGGUUCACGUACCGUUCUGCGAGAGGCUGCGGGGGAGGUUCCUGCGGCCUACUCACC
..........((............)..)................................................
..........((............)..)...........((..............................)..).
..........((....(..)....)..)...........((..............................)..).
...(.(....((....(..)....)..)....)).....((..............................)..).
>U41288.1/27369-27451
GAGAGCCGUAUGCGGUGAAAGUUGCACGUACGGUUCGGUGGGAGGUUUCUUAUAUCCCUCGUGGAGUAGGCUAUCGACCCAAC
..........((............)..).......................................................
..........((............)..).............(.(..............................)..).....
..........((....(..)....)..).............(.(..............................)..).....
...(.(....((....(..)....)..)....).)......(.(..............................)..).....
>Z72500.1/3161-3251
GAAAGCCGUAUGAGGGGAAACUUUCACGUACGGUUUGGAGGAAAGUCGGGAAGCUCUAAGGUAUUUGCUAUGAACUCUCGGCUCAUCCUAC
..........((............)..)...............................................................
..........((............)..).............(.(......................................)..).....
..........((....(..)....)..).............(.(......................................)..).....
...(.(....((....(..)....)..)....).)......(.(......................................)..).....
>AJ277126.1/9249-9325
AGGAGCCGUAUGAAUGGAGACAUUCACGUACGGUUUUGGAGUAGCAGGAUAUAUGGUAACAUGUACUUGACUAUAAG
..........((............)..).................................................
..........((............)..)...........((.............................)..)...
..........((....(..)....)..)...........((.............................)..)...
...(.(....((....(..)....)..)....)).....((.............................)..)...
>AF200692.2/21112-21025
GAGAGCCGGAUGCGCUGAAAGGUGCACGUCCGGUUCGGGGAGGAGAGGCAGGGAAAUAGUCCGACUACGCCCUGCCUCUUACUCUUAC
..........((............)..)............................................................
..........((............)..).............(.(..................................)..)......
..........((....(..)....)..).............(.(..................................)..)......
...(.(....((....(..)....)..)....).)......(.(..................................)..)......
>Z00044.2/12705-12618
GAGAGCCAAAUGAAUCGAAAGAUUCAUGUUUGGUUCGGGAAGGGAUUAUGGAAUUUUGGAAAGGAAUGGAAAAAUAAUCUACUUUCAU
..........((............)..)............................................................
..........((............)..)...............((.............................)..)..........
..........((....(..)....)..)...............((.............................)..)..........
...(.(....((....(..)....)..)....).)........((.............................)..)..........
>AC145820.20/76117-76030
GAGAGCCAAAUGAAUUGAAAGAUUCAUGUUUGGUUCGGGAAGAGAUCAUAGACAUUUUGAAAUGAAUGGAAAGAGAAUCUACUUUCAU
..........((............)..)............................................................
..........((............)..).............(.(..................................)..)......
..........((....(..)....)..).............(.(..................................)..)......
...(.(....((....(..)....)..)....).)......(.(..................................)..)......
>X02819.1/3326-3410
GAGAGCCGUAUAAUUACGAAAGUAUCCCGUACGGUUCGGUGACGAGCCGUGUCAACCCUGCAAAGGGAAUGCGUCUUAGUUCAAU
..........(.(............)..)........................................................
..........(.(............)..).............((................................)..).....
..........(.(....(..)....)..).............((................................)..).....
...(.(....(.(....(..)....)..)....).)......((................................)..).....
>AJ131147.1/1719-1794
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGAAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
..........((............)..)................................................
..........((............)..)............((..............................)..)
..........((....(..)....)..)............((..............................)..)
...(.(....((....(..)....)..)....).).....((..............................)..)
>V00712.1/1227-1289
GAGAGCUUUUUGCGGGGAAACUUGCAAGUCAAGUUUGGGGGGAGGCGGGCGUCGACCCAACCU
..........((............)..)...................................
..........((............)..).......((....................)..)..
..........((....(..)....)..).......((....................)..)..
>AJ316582.1/78387-78450
UUGAGCUGUACGAGAUGAAAGUCUCAUAUACGGUUCUCAGAGGGGGAGUUCCGCCUAUCUCAAU
..........((............)..)....................................
..........((............)..)........((......................)..)
..........((....(..)....)..)........((......................)..)
>X07106.1/1306-1373
UUGAGCUGUACGAGAUGAAAGUCUCAUAUACAGUUCUUAGGGGGGUUUAAUAGUUUACCUAUCUCAAU
..........((............)..)........................................
..........((............)..)........((..........................)..)
..........((....(..)....)..)........((..........................)..)
>AJ277126.1/8230-8302
UUGAGCCGUGUGCGUUGAAAGAUGCAUGCACGGUUCUUAGGGGGGGAAAGCCGGUAACCGUACCUAUCCCAAU
..........((............)..).............................................
..........((............)..)..........((.............................)..)
..........((....(..)....)..)..........((.............................)..)
>AJ277126.1/35792-35885
GAGAGCCCGGUGCGGUGAAAGUCGCACGCCGGGUUCGGGGAGAACUCUCUGUAACUAAAAUAUUUCGGUAUCACGUUAUGGUUAGUCACUCCAC
..........((............)..)..................................................................
..........((............)..).............(.(.........................................)..).....
..........((....(..)....)..).............(.(.........................................)..).....
>AJ130737.1/1761-1840
UUGAGCCGUAUGCGGGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGGGAGCUUGCUCGAAAGAGCCUACCUAUCCCGAU
..........((............)..)....................................................
..........((............)..)............(.(.................................)..)
..........((....(..)....)..)............(.(.................................)..)
>AM489440.1/2183-2254
AACCGCCGUAUGCGGAGCCGCAUGUACGGUGGUGUGAGAGGACGGCGGGAGUGAUCCCGCCUCCUACUCGAU
........((............)..)..............................................
........((............)..)..........((..............................)..)
........((....(..)....)..)..........((..............................)..)
>DQ787115.1/750-834
GAACGCCGUAUGCGGUGAAAGUCGCACGUACGGUGUGGAGCGGGGGAAAAAUUGGAGAUAACAUCAAAGAUUUACCUAUCGCUAU
..........((............)..).........................................................
..........((............)..)..............(.(..............................)..)......
..........((....(..)....)..)..............(.(..............................)..)......
>FM992111.1/3630-3713
GAACGCCGUAUGCGGUGAAAGUCGCACGUACGGUGUGAGGCGGGGGAAAAGUUGGAGAUAACAUCAAAUUCUUACCUAUCGUAC
..........((............)..)........................................................
..........((............)..)..............(.(..............................)..).....
..........((....(..)....)..)..............(.(..............................)..).....
>X03481.1/524-600
AGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGUGGCAGUAAGGGUGACUUAUCUGUCAACUUUUCC
..........((............)..).................................................
........((................)..)............(.(......................)..)......
>U77945.1/1848-1919
AACCGCCGUGUACGGAACCGUACGCACGGUGGUGUGAGAGGACGGCGGGUGUGAAUCCGCCUCCUACUCGAU
........((............)..)..............................................
..........((........)..)............((..............................)..)
>M68929.1/120754-120816
GGGAGCCGGAUGAGGGAGAAAUUUCUCACGUCCGGAUCUUUGAGAGCCUCCGGGCUACUCUCU
..........(..(............)..).................................
..........((..............)..).............(.(........)..).....
>U41288.1/3118-3192
UUGAGCCGUAUGCGAUGAAAGUUGCACGUACGGUUCUUACCGGGGGAAAGCUUGAGAGAGCCUACCUAUCGGAAC
..........((............)..)...............................................
..........((............)..)..........((...............................)..)
>X04336.1/3210-3313
GAGAGCCGUAUGCAGGGAAACUUGCACGUACGGUUCGGAGGGAGGUCUCUCGUUGCCAGUUCUAAUCUAUUGAUAAGGAUCACGGUGCGGGUUAUCGACCCUAC
..........((............)..)............................................................................
..........((............)..).......................((...............................)..)................
>M68929.1/49817-49892
UUGAGCCGUAUGCGGGAAAACUCGCACGUACGGUUCUUAGGGGGGGGAAAGCUUGAGAGGGCCUACCUAUCCCGAC
..........((............)..)................................................
..........((............)..)............((..............................)..)
>AF029891.1/9161-9235
UUGAGCCGUAUGCGAUGAAAGUCGCACGUACGGUUCUUAGAGGGGGAAAGUUCGAGAGGACCUACCUAUCUCAAC
..........((............)..)...............................................
..........((............)..)..........((...............................)..)
>AJ277126.1/6413-6487
GUGAGCCGUGUGCGAUGAAAGUCGCAAGCACGGUUCUGAUGGGGGGAAAACGAGAGAUCGUCUACCUAUCCAACU
..........((............)..)...............................................
..........((............)..)...........((.............................)..).
>Y18999.2/2881-2957
UUGAGCCGGAUGAGGGGCGACUCUCAUGUCCGGUUCUUAGGGGACGGCGGCGCAGUAAUGCGCUGCUGUUACCCGAC
..........((............)..).................................................
..........((............)..)...........((................................)..)
>U13767.1/4803-4881
GGGAGCCGUGUGCAGCGAAAGUUGCACGCACGGAUCUAACAGAGAGGGACGGGGAAUAAUAUCCCCUCUCGACUCUAAC
..........((............)..)...................................................
........((................)..)...........((................................)..)
>AB027572.1/1941-1862
AGGAGCCGAAUGAAAUCAAAAUUUCAUGUUCGGUUUUGAAUUAGAGACGUUAAAAAUAAUCAACCAACGUCGACUAUAAC
..........((............)..)....................................................
..........((............)..)...........((...................................)..)
>AF235045.1/658-731
GAAAGCCGUAUUCGAUGAAAGUCGUAUGUACGGCUUGGAGGGAGAUCUUUCAUAUCUUUCGAGAUCCACCCUAC
..........((............)..)..............................................
........((................)..).......(.(..............................)..)
>AB042240.3/88332-88259
GAAAGCCGUAUUCGAUGAAAGUCGUAUGUACGGCUUGGAGGGAGAUCUUUCCUAUCUUUCGAGAUCCACCCUAC
..........((............)..)..............................................
........((................)..).......(.(..............................)..)
>AF243383.1/10225-10322
CAGAGCCGUAUACUCCGAGAGGGGUACGUACGGUUCCCGAAGAGGGUGGUGCAAACCAGUCACAGUAAUGUGAACAAGGCGGUACCUCCCUACUUCAC
..........((............)..)......................................................................
..........((............)..)......................(...(........................)..)...............
>AJ277126.1/2879-2953
UUCAGCCGUGUGCGGUGAAAGUCGCACGCACGGUUGUGAGGGGGGGAAAAUCUGUGAAGAUCUACCUAUCCCGAU
..........((............)..)...............................................
........((................)..).........((..............................)..)
>AY248839.1/1808-1884
GGGAGCGGUGUGAAUCGAGAGGUUCACGCACCGUUCUGCGAGAGGCCGGCUGGUGAAACUCCUCCGGCCUACUCACC
..........((............)..).................................................
........((................)..).........((...............................)..).
>Z00028.1/5121-5234
GAGAGCACAGUACGAUGAAAGUUGUAAGCUGUGUUCGGGGGGGAGUUAUUGCCUAUCGUUGUCCUCUAUGGUAGAACCCGUCGGGGAGGCCUGAGAGGCGGUGGUUUACCCUGU
..........((............)..)......................................................................................
..........((............)..).............................(...(........................)..)........................
>EF165030.1/2861-2955
GAACGCCGUGUGCGGGGAAACUCGCACGCACGGUGUGAAGCGGGGAAAAAUAGCCCCUCCGGGUAAUGCCGAGGGUGACUAUUACCUAUCGCUAU
..........((............)..)...................................................................
........((................)..)............((.........................................)..)......
>AM087200.3/1962-1851
GAAAGCCGUGUGCAAUGAAAAGUGCAAGCACGGCUUGGGGAGGGAUCUUUACUUGUUUAUUUAAUUUAAGAUUAACAUUUAUUUUAUUUAACAAGGAACUUAUCUACUCCAU
..........((............)..)....................................................................................
..........((............)..)................(.(....................................................)..).........
>AJ316582.1/9914-9993
AGGAGCCGAAUGAAACCAAAGUUUCAUGUUCGGUUUUGAAUUAGAGACGUUAAAAAUAAUGAAUCGACGUCGACUAUAAC
..........((............)..)....................................................
..........((............)..)...........((...................................)..)
>M81726.1/5191-5288
GUGAGCCGUAUGAUGGGCAACUAUCUCCUGCGGUUCGGAGAGGACUCAGCUGUUAGUUAGUACCCCCGUCGGUUUCGGGGUGGACCCUUUUACUCUAU
..............................(.(............)..).................................................
..............................((.............)..)...........................((................)..)
>Y08501.2/169475-169584
GUGAGCCUAGUGAUAGGAGACUAUCUAGCUUGGUUCGGAGAGCACUUGUUGGGUUAAAAACUUUUUUUGUUGCUAAAUGUUACAGCCUAAAUGCUGAACUAUUGACUCUA
..........((............)..)..................................................................................
..........((............)..)........................(......(..............................)..)................
>M68929.1/41010-41093
GUGAGCCGUGUAAUGGGCAACUAUUUCGCACGGUUCGGAGGGCACUUCAGUAAGCCCUACAAGGGCUGAAGUCUUGACCCCUAU
..........((............)..)........................................................
..........((............)..).............(.(..............................)..)......
>X63625.1/1815-1875
GAGAGCUUUUUGCGGGGAAACUUGCAAGUACAGUUUGGAGGGAGGCGGGCGUCGACCCAAC
..........((............)..).................................
>X04465.1/116516-116403
GAGAGCACAGUACGAUGAAAGUUGUAAGCUGUGUUUGGGGGGGAGUUAUUGUCUAUCAAAGGCCUCUAUGGUAAAAUAAAUCAAUAAAGUCUAAGAGACGAUGGCUUACCCUGU
..........((............)..)......................................................................................
>Z00044.2/44465-44397
CUGAGCCGUAUGAGGUAAGAAAUUCUCAAGUACGGUUCUAAGGGAAGGAAUUGAACUACCUAUUCCGGC
..........(..(............)..).......................................
>V00166.1/1829-1941
GAGAGCACAGUACGAUGAAAGUUGUAAGCUGUGUUCGGGGGGGAGUUAUUGUCUAUCGUUGGCCUCUAUGGUAGAAUCAGUCGGGGGACCUGAGAGGCGGUGGUUUACCCUGC
..........((............)..).....................................................................................
>AF143421.1/868-1007
GUGAGCCGUGUGAUGGGAAACCUCCCCGCACGGUUCGGAGAGCACUUAAUUAGAAUGUUCCUGGGGGUACCACAUCAUUGCAAGGGUAAAAGAGCUCGAUUCGCAGAUUGGUUCGACCCGGAAUUCACUUCCGACCCUGU
..........((............)..)................................................................................................................
>Y08501.2/135699-135828
UCGAGCCGUAUGAAGGGAAACUCUCACGUACAGUUUGUUUUUUUUGGGGGGGGCAGGAGCCCGACAGGGUCCCCCACUGACUUGGCCCGGGCCUAAGUUAAAGUGAAGUGGUGGGCCUACCCAUCCCAAC
..........((............)..)......................................................................................................
>X72287.1/717-859
GUGAGCCGUGUGAUGGGAAACCUUCCCGCACGGUUCGGAGAGCACUGAAUUAGAAUGAGAGGUUCACCACCACAUCAUUGCAUGCAAGGGGAGCUCGCUCGAUUCGCAAAUUGGUCCGACUCGUAAUUCACUUCUGACUCCGU
..........((............)..)...................................................................................................................
>X60045.1/1000-1142
GUGAGCCGUGUGAUGGGAAACCUUCCCGCACGGUUCGGAGAGCACUGAAUUAGAAUGAGAGGUUCACCACCACAUCAUUGCAUGCAAGGGGAGCUCGCUCGAUUCGCAAAUAGGUCCGACUCGUAAUUCACUUCUGACUCUGU
..........((............)..)...................................................................................................................
>AF143423.1/825-965
GUGAGCCGUGUGAUGGGAAACCUCCCCGCACGGUUCGGAGAGCACUUAAUUAGAAUGUUCCUGGGGGGUACCACAUCAUUGCAAGGGUAACAGAGCUCGAUUCGCAGAUUGGUUCGACCCGGAAUUCACUUCCGACCCUGU
...................................((............)..)........................................................................................
>M68929.1/7762-7915
GAGAGCCGUAUGCGAGGAGACUUGCACGUACGGUUCGGAGGAAGGCCAUUGAUACCUAAUGAAAAUAUCACCAUGACUAAGGUAUAAGCCGCGCCUUGAAAGUCCAGAGGACUUGGUUUUAUUGGGUAGUUGAGGUUGGUGGCCCAUCUCUUAC
..........((............)..)..............................................................................................................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 ((Y)NN)R < 0.001 7.02
AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
.........1.........2.........3.........4.........5.........6.........7......
1234567890123456789012345678901234567890123456789012345678901234567890123456
2 ((N)NR)Y < 0.001 8.12
AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
.........1.........2.........3.........4.........5.........6.........7......
1234567890123456789012345678901234567890123456789012345678901234567890123456
3 R(AN)N < 0.001 4.02
AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
.........1.........2.........3.........4.........5.........6.........7......
1234567890123456789012345678901234567890123456789012345678901234567890123456
4 A(G(C)) < 0.001 1.42
AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
.........1.........2.........3.........4.........5.........6.........7......
1234567890123456789012345678901234567890123456789012345678901234567890123456
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 ((Y)NN)R < 0.001 7.02
AJ131136.1/1732-1807
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
UUGAGCCGUAUGCGAGGAAACUUGCACGUGCGGUUCUUUGAGGGGGGAAAGCUUGAAAGAGCCUAUCCAUCCCGAU
.........1.........2.........3.........4.........5.........6.........7......
1234567890123456789012345678901234567890123456789012345678901234567890123456
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).