D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Small nucleolar RNA SNORA73 family   (Rfam: RF00045)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(YNY)
(.NNC.)
91.7
86.1

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 98.3 %
(± 0.264 %)
Decision tree:

5-fold cross-validation: 88.9 %
(± 2.98 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 72.4 %
(± 6.14 %)
of L07382.1/2-208
L07382.1/2-208
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
(((((((((..)))))))))((((((((((((((((((((((((((((((((((((((((((((((((((...)))))))(((((((((((..)))))))))))(((((((.(.(((((((....(((....)))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))(((((..))))).
...................................................................................................1...................................................................................................2.......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.......
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abstract shape: (()(()()))(()())

Number of sequences
Structure ORBs (out of 36) (%)
1 (YNY)
 33 91.7
>FJ915988.1/4-119
CCCUUUCCACAACGUUGGAGAUAAAGCUGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUGGACAAUGACUGGGGAGACAAACCAUGCAGGAAACAACC
.........................................................................(...)......................................
>U64698.1/3-117
UCUCCCCGGGCUCUGUCCUAGUGGCGUACGGGAGCUUAGGGCACUGCCCGGUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUCGAGUCUGCGCCUGCAUAU
..........(...)....................................................................................................
>AJ493425.1/3-138
GGUUACUAGUGGCUCUGUCCAAGUGGUAUUUGGGAGCAUAGCUCUAAGUGCAGUGGUGUACAAUCCCCUUCCACAGUGUUGUAGAGCAAGUCUGCCUCUGGUUCUAGAGCUGACGAGGACAGCAUCCUAUAUAUUU
............(...).......................................................................................................................
>U64697.1/3-117
UCUCCCCGGGCUCUGUCCUAGUGGCGUACGGGAGCAUAGGGCACUGCCCAAUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUCGAGUCUGCGCCUGCAUAU
..........(...)....................................................................................................
>AJ306558.1/1-213
UCAACAUGGACAUCCGUUGAGGUUACUUGUGGGUCUGUCCAAGUGGUAUAUGGGAGUAUAGCCCUAAGUGCAGUGAUGUACAGUCCCCUUCCACAGUGUUGAAGAGCAAGCCCUGUCCCUGGUUCUAGAGCUGAUGAGGGCAGACUCCUUUAUAUUCCUAUAACUUCUCAGUCUCUAGACAAUUACUGAGGAGAAACCAUGCAGGGUGCAACU
.......................................................(...).........................................................................................................................................................
>AJ306564.1/1-212
CCAAUAUGGUCAUCCAUUGAGGUUACUUGUGUCUCUGCCCAAGUGGUAUAUGGGAGCAUAGCCCUAAGUGCAGUGAUGUACAAUCCCCUUCCACAGUGUUGAAGAGCAAGCCUGUCUCUGGUUCUAGAGCUGAUGAGGACAGCAUCCUACAUAUUUUUAUAACUUCUCUGUCUCUAGAUAAUUACUGAGGAGAAACUAUGCAGGUUGCAACU
.......................................................(...)........................................................................................................................................................
>AACN010016018.1/3148-3351
CCAACGUGGAUACUCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGUAUGGGAGCUCAGGGCUCUGCCCCGUGACGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCCGGGCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCCUGUGGACCAUGACUGAGGAGACAAACCAUGCAGGAAACAUCU
....................................................................(...)...................................................................................................................................
>AAFR03060641.1/7668-7867
CCAACGAGGAUAUCCUGAGGUCACUCCUCCGGCUCUGUCCAGGUGGCAAAAGGGAGCUUAGGGCUUUUGCCCUGUGAUGUACAGUCCCAUUCCACAACGUUGGAUAUCAAGCUGGGCUUUGUGUCUGCACCUGCAUAUUCCUAAACCUUCUCAGAGUCUUUGGACUAUGACUGAGGAGACAAACCAUGCAGGAAACAAUU
....................(...)...............................................................................................................................................................................
>AAFC03094567.1/12296-12093
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGAACGGGAGCGUAGGGCUCUGCUCAGUGACGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCCUGUGGACAAUGACUGAGGAGACAAACCAUGCAGGAAACAUCU
.................................................................................................................................................................(...)......................................
>X94942.1/2086-2300
CCGACGUGGACAUCCAGCGAGCUGCUCUCCUGGCUCUGUCCUGGUGGCGUAUGGGAGCGUAGCUUUCAGCAGAGACGUACAUUCCCGUUCCACACCGUCGGAGAGAAAGCUCUGUCCCCGGCCUCUGGCUGGCGUGGACGAGCGUCUGUAUAUUCCUACAUCUUCCCAGAGUCCUACUGGACCGUUACUGGGGAGCUAAACCAUGCAGUGCACAU
.................................(...).................................................................................................................................................................................
>X71081.1/6865-7085
CCAACGUGGAUAUCUCAUGAGGUUACUCAUGGGCUCUGUCUUGGUGGCGUAUGGGAGCGUCGCCCUGUGAGGCGCAGUGACGUAUAAUCCCCUUCCACAACGUUGGAGAACAAGCAUGUCCCUAGCCUUCGGCUGGUGUGGGCAGCACCCUGUAUAUUCCUACAACUUCCCAGAGCCCUCGGGCAAUGACUGAGGAGACAAACCAUGCAGGACACACAAAU
..............................................................................................................................(...)..........................................................................................
>AAPE02043788.1/16918-17121
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGCAGGGGAGCAUAGGGCUCUGCCCCGUGAUGUACAGUCCCUUUCCACAACGUUGGAGAGAAAGCCGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCCUGUGGACGAUGACUGAGGAGACAAACCAUGCAGGAAACAUCU
...................................................................(...)....................................................................................................................................
>AAQQ01135328.1/378-177
CCAACGUGGAUACUCUCGGGAGGUCUCUCCCCGGGCUCUGUCCAGGUGGCAUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUUAUGUCUGCACCUGCAUAUUCCUACGACUUCUCAGAGUCUGUGGACUAUGACUGAGGAGACAAACCAUGCAGGAAACAAAA
..................................................................(...)...................................................................................................................................
>X94942.1/2747-2965
CCGACGUGGACAUCCAGCGAGCUGCUCUCCUGGCUCUGUCCUGGUGGCGUAUGGGAGCGUAGCUUUUCAGCAGAGACGUACAUUCCCGUUCCACACCGUCGGAGAGAAAGCUCUGUCCCCGGCCUCUGGCUGGCGUGGACGAGCGUCCUGUAUAUUCCUACAUCUUCCCAGAGUCCUACUGGGCCGUUACUGGGGAGCUAAACCAUGCAGUGCACAUCA
.................................(...).....................................................................................................................................................................................
>AJ306560.1/1-214
CCAAUAUGGUCAUCCAUUGAGGUUACUCAUGGCUCUGUCCAAGUGGUGUAUAUGGGAGCAUAGCCCUAAGUGCAGUGAUAUACAAUCCCCUUCCACAGUGUUGAAGAGCAAGCCUGUCUCUGGUUCUAGAGCUGAUGAGAACAGCAUUCUAUAUAUUUUUAUAACUUCUCAGUCUCUAGACAAUUACUGAGGAGAAACCAUGCAGGUUACAACU
...................................................................................................................(...)..............................................................................................
>AAHX01040057.1/46568-46771
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCUAGUGGCGUACGGGAGCAUAGGGUACUGCCCGAUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGGAGCUGGGCUUCGAGUCUGCGCCUGCAUAUUCCUACGACUUCUCAGAGUCCUGUGGACCGUGACUGAGGAGACAAACCAUGCAGGAAACAAAA
.................................................................................................................................................................(...)......................................
>AAGV020314116.1/757-553
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGCAGGGGAGCACAGGGCUCUGCCCAGUGAUGUACAGUCCCAUUCCACAACGUUGGAGAGGAAGCCGGGCUCUCGAGCCCCCACCUGCAUAUUCCUACAGCUUCUCUGAGUCUUAUUGACAAUGACUGAGGAGAAAAACCAUGCAGGAAACAUAU
...................................................................(...).....................................................................................................................................
>AAKN02028629.1/12706-12503
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCAUAGGGGAGCAUAGGGCUCUGCCCCGUGAUGUACAGUCCCUUUCCACGACGUUGGAGAAGAAGCCGGGCCUUGUGUCUGCGCCUGCAUAUUCCUACAACUUCUCAGAGUCCUUUGGACAGUGACUGAGGAGAUAAACCAUGCAGGAAACAGUC
...................................................................(...)....................................................................................................................................
>AACZ03060756.1/41573-41365
CCAACAUGGAUAGCCUGGGAGGUCACUCUCCCCAGGCUCUGUGGAAGUGGUGUUGGGGAGCAUAGACGUUUGGUCCAUGAAGUACAGUACAGCCCCUUUCCACAAUGUUGGAGAUGAAGCUGGGUCUCCUGUCUGCGCCUGCAUAUUCCUAUAGCUUCCCUGAGUCCUGUGGAUGAUGACUGGUGAGACAAAUCGUGCAGGAAACAUGU
....................................................................................................................................(...)........................................................................
>AJ006836.1/1091-1295
CCAACGUGGAUAUCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCUAGUGGCGAACGGGAGCUUAGGGCAUUGCCCGGUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUUCGAGUCUGCGCCUGCAUAUUCCUACGACUUCUCAGAGUCCCGUGGACCAUGACUGAGGAGACAAACCAUGCAGGAAACAAAA
..................................................................................................................................................................(...)......................................
>BX276180.5/20672-20892
CCAACGUGGACAUCCCGUGAGAUGCCUCUCAUGUGGCUCUGUCCAUGUGGCGUAUGGGAGCGUAGCACUUCGGUGUUGUGACGUACAGUCCCGUUCCACGACGUUGGAUAGCAAGCUUGUCCCCGGCCUCUGGCUGGUGUGGACUACGUCCUGUAUAUUCCUACAUCUUCCCAGAGCCCUUUGGGCCAUUACUGGGGAGGUAAACCAUGCAGUGCACACUA
..................................................................................................................................................................................(...)......................................
>L22738.1/523-728
CCAACGUGGAUACACCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
....................................................................(...).....................................................................................................................................
>X71081.1/3489-3711
UCAAUGUGGAUAUCCUGUGAGGUUACUCUCAUGGGCUCUGUCCAAGUGGCGUAUGGGAGCGUAGUGCUUUAUGGCGCAGUGACGUACAAUCCCUUUCCACAACAUUGAAGAACAAGCAUGUCCUCGGCCAUUAGGCUGUUGUGGGCAGCGUCCUGUAUAUUCCUACAACUUCCCAAAGCCAAAAUGGCUCUUACUGGGGAGACAAACCAUGCAGGUUACAUCU
...................................................................................(...).......................................................................................................................................
>AANH01008512.1/7650-7868
CCGACGUGGUCAUCCAGCGAGGUCACUCUCCUGGCUCUGUCCUGGUGGCGUUAUGGGAGCGUAGCGCUCAGCUGAGACGUACAAUCCCGUUCCACAGCGUCGGAGACAAAGCUCUGACCCCGGCCUCCGGUCGGUGGGGACGAGCGUCCUGCAUAUUCCUACAUCUUCCCAGAGUCCUUUGGGCCGUGACUGGGGGGCUAAACCAUGCAGUGCACAACA
............................................................................................................................(...)..........................................................................................
>ABDC01498416.1/762-965
CCAACGUGGAUACCCUGGGAGGUCACUCUGCCCAGGCUCUGUCCAGGUGGCAUAGGGGAGCAUAGGGCUCUGCCCCGUGACGUACAGUCCCUUUCCACAACGUUGGAGAUAAAGCUGGGCUUUGUGUCUGCGCCUGCAUAUUCCUACGACUUCCCAGAGUCCUGUGGACAAUGACUGGGGAGACAAACCAUGCAGGAAACAUGU
......................(...).................................................................................................................................................................................
>AAGU03057465.1/82998-83202
CCAACGUGGAUAUUCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCUGGUGGCGCAGGGGAGCAUAGGGCUCUGCCCCUUGAUGUACAAUCCCUUUCCACGACGUUGGAGAUAAAGCCGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCGUGCAGACAAUGACUGAGGAGACAAACCAUGCAGGAAACAUGU
....................................................................(...)....................................................................................................................................
>L07382.1/2-208
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
.....................................................................(...).....................................................................................................................................
>AJ493421.1/1-189
CCACUAUAGUCCUCCAUUGAGGUUACUUGUGGCUCUGUCUCUGUGUGUGUAUGUGUGUAAUUCCCUUCCACGGUGUUGAAGAGUAAGCCUGUCCCUGGUUUUAGAGUCAAUAAGGGCAGCAAUCUUUAUAUUCCUAUAACUUCUCCGUCUCUAGACAGUUACUGAGAAGGAACCAUGCAGGAUGAAGCU
....................................(...)....................................................................................................................................................
>AJ493422.1/1-216
CCAAUAUGGUAAUCCGUUGAGGUUACUUGUGGCUCUGUCCAAGUGGUAUAUGGGAGCAAAGCCCUAAGUGCAAUGGUGUACAAUCCCCUUCCACAGUGUUGAAGAGCAAGCCUGUCUCUGAUUCUAGAGCUGAUGUGGAUAGCAUCCUAUAUAUUUUAUUUUAUAACUUCUCAGUCUCUAGACAAUUACUGAGGAGAAACCAUGCAGGGUGCAACU
...................................................................................................................(...)................................................................................................
>AAVX01060057.1/357-135
CCAAUGAGGGCGUCCAUGGGAGUUCGCUCUCCCGUGGCUCUGUCCGAGUGGCGUAUGGGAGCGUAGGCCUCUGGGCCCUUGACGUACAGUCCCAUUCCACAGCGUUGGAGAGAGUGCCUGUCCCCGGCCCUUGGGCUGGUGAGGACAGCAGCCUGUAUAUUCCUAUACCUUCUCAGAGUCCAGCGGGCAAUGACUGAGGAGAUAAACCAUGCAGGGUACAAUU
...................................................................................(...).......................................................................................................................................
>AY948718.1/2-221
UCGACAUGUGACUAGCGAUCCUCUUCGGGGUUGAUUGCUUUUCUUAGUGGAGCAUCGGGGGCUUUCUGUAAAGUUGACUCCGAUCCACCUUGUCGUAUACCAACAGUCUGUGUGGCCCUCUACCGCUAUUUGAGAUGCCCGGGCUGGAUUGCAUAUUCCUUAUCCUUCCGUAGAUCCUAUGGGUCCGUGACGGUUAGGACAAACCAUGCAAAUUACAAAU
................................................................................................................................................................................(...).......................................
>X94942.1/3702-3921
CCGACGUGGACAUCCAGCGAGCUGCUCUCCUGGCUCUGUCCUGGUGGCAGUAUGGGAGCGUAGCUUUUCAGCAGAGACGUACAUUCCCGUUCCACACCGUCGGAGAGAAAGCUCUGUCCCCGGCCUCUGGCUGGGGUGGACGAGCGUCCUGUAUAUUCCUACAUCUUCCCAGAGUCCUACUGGACCGUUACUGGGGAGCUAAACCAUGCAGUGCACAAAC
............................................................................................................................(...)...........................................................................................
>AAPN01430738.1/56-260
CCAACAGGGACACCCGGGGAGGGUCGUUGCCCUCCCCGGCUCUGUCCAAGCGGCGUAUGGGAGCGUAGGGGUCACCCCGUGACGUACAGUCCCGUUCCGUGCUGUUGGAGAUCAAGCCGGGCUUCGUGUCUGCGCCUGCAUAUUCCUACUGCUUCUCUGAGCCCCCGGGCCGUGACAGAGGAGAGAAACCAUGCAGGAUACAAGC
...................................................................................(...).....................................................................................................................
2 (YNY)
(.NNC.)
 29 80.6
>FJ915988.1/4-119
CCCUUUCCACAACGUUGGAGAUAAAGCUGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUGGACAAUGACUGGGGAGACAAACCAUGCAGGAAACAACC
.........................................................................(...)...................(...)..............
>U64697.1/3-117
UCUCCCCGGGCUCUGUCCUAGUGGCGUACGGGAGCAUAGGGCACUGCCCAAUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUCGAGUCUGCGCCUGCAUAU
..........(...)........................................(...).......................................................
>U64698.1/3-117
UCUCCCCGGGCUCUGUCCUAGUGGCGUACGGGAGCUUAGGGCACUGCCCGGUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUCGAGUCUGCGCCUGCAUAU
..........(...)........................................(...).......................................................
>AJ493425.1/3-138
GGUUACUAGUGGCUCUGUCCAAGUGGUAUUUGGGAGCAUAGCUCUAAGUGCAGUGGUGUACAAUCCCCUUCCACAGUGUUGUAGAGCAAGUCUGCCUCUGGUUCUAGAGCUGACGAGGACAGCAUCCUAUAUAUUU
............(...).....................................................................................................(.....)...........
>AAPN01430738.1/56-260
CCAACAGGGACACCCGGGGAGGGUCGUUGCCCUCCCCGGCUCUGUCCAAGCGGCGUAUGGGAGCGUAGGGGUCACCCCGUGACGUACAGUCCCGUUCCGUGCUGUUGGAGAUCAAGCCGGGCUUCGUGUCUGCGCCUGCAUAUUCCUACUGCUUCUCUGAGCCCCCGGGCCGUGACAGAGGAGAGAAACCAUGCAGGAUACAAGC
...................................................................................(...)............................................(....)...................................................................
>AAQQ01135328.1/378-177
CCAACGUGGAUACUCUCGGGAGGUCUCUCCCCGGGCUCUGUCCAGGUGGCAUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUUAUGUCUGCACCUGCAUAUUCCUACGACUUCUCAGAGUCUGUGGACUAUGACUGAGGAGACAAACCAUGCAGGAAACAAAA
..................................................................(...)...............................................................................(....)..............................................
>AAGU03057465.1/82998-83202
CCAACGUGGAUAUUCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCUGGUGGCGCAGGGGAGCAUAGGGCUCUGCCCCUUGAUGUACAAUCCCUUUCCACGACGUUGGAGAUAAAGCCGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCGUGCAGACAAUGACUGAGGAGACAAACCAUGCAGGAAACAUGU
....................................................................(...).........................................................................................(...)......................................
>AJ493422.1/1-216
CCAAUAUGGUAAUCCGUUGAGGUUACUUGUGGCUCUGUCCAAGUGGUAUAUGGGAGCAAAGCCCUAAGUGCAAUGGUGUACAAUCCCCUUCCACAGUGUUGAAGAGCAAGCCUGUCUCUGAUUCUAGAGCUGAUGUGGAUAGCAUCCUAUAUAUUUUAUUUUAUAACUUCUCAGUCUCUAGACAAUUACUGAGGAGAAACCAUGCAGGGUGCAACU
...................................................................................................................(...)..........................................................(....)................................
>ABDC01498416.1/762-965
CCAACGUGGAUACCCUGGGAGGUCACUCUGCCCAGGCUCUGUCCAGGUGGCAUAGGGGAGCAUAGGGCUCUGCCCCGUGACGUACAGUCCCUUUCCACAACGUUGGAGAUAAAGCUGGGCUUUGUGUCUGCGCCUGCAUAUUCCUACGACUUCCCAGAGUCCUGUGGACAAUGACUGGGGAGACAAACCAUGCAGGAAACAUGU
......................(...)......................................................(...)......................................................................................................................
>L07382.1/2-208
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
.....................................................................(...).....................................................(....)..........................................................................
>X94942.1/2747-2965
CCGACGUGGACAUCCAGCGAGCUGCUCUCCUGGCUCUGUCCUGGUGGCGUAUGGGAGCGUAGCUUUUCAGCAGAGACGUACAUUCCCGUUCCACACCGUCGGAGAGAAAGCUCUGUCCCCGGCCUCUGGCUGGCGUGGACGAGCGUCCUGUAUAUUCCUACAUCUUCCCAGAGUCCUACUGGGCCGUUACUGGGGAGCUAAACCAUGCAGUGCACAUCA
.................................(...).............................(....)..................................................................................................................................................
>X94942.1/3702-3921
CCGACGUGGACAUCCAGCGAGCUGCUCUCCUGGCUCUGUCCUGGUGGCAGUAUGGGAGCGUAGCUUUUCAGCAGAGACGUACAUUCCCGUUCCACACCGUCGGAGAGAAAGCUCUGUCCCCGGCCUCUGGCUGGGGUGGACGAGCGUCCUGUAUAUUCCUACAUCUUCCCAGAGUCCUACUGGACCGUUACUGGGGAGCUAAACCAUGCAGUGCACAAAC
............................................................................................................................(...)...............................................(....)......................................
>AAPE02043788.1/16918-17121
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGCAGGGGAGCAUAGGGCUCUGCCCCGUGAUGUACAGUCCCUUUCCACAACGUUGGAGAGAAAGCCGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCCUGUGGACGAUGACUGAGGAGACAAACCAUGCAGGAAACAUCU
...................................................................(...)..........................................................(....)....................................................................
>AAHX01040057.1/46568-46771
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCUAGUGGCGUACGGGAGCAUAGGGUACUGCCCGAUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGGAGCUGGGCUUCGAGUCUGCGCCUGCAUAUUCCUACGACUUCUCAGAGUCCUGUGGACCGUGACUGAGGAGACAAACCAUGCAGGAAACAAAA
.......................................................................................................................(...)......(....)....................................................................
>X71081.1/3489-3711
UCAAUGUGGAUAUCCUGUGAGGUUACUCUCAUGGGCUCUGUCCAAGUGGCGUAUGGGAGCGUAGUGCUUUAUGGCGCAGUGACGUACAAUCCCUUUCCACAACAUUGAAGAACAAGCAUGUCCUCGGCCAUUAGGCUGUUGUGGGCAGCGUCCUGUAUAUUCCUACAACUUCCCAAAGCCAAAAUGGCUCUUACUGGGGAGACAAACCAUGCAGGUUACAUCU
...................................................................................(...)......................................................................................................(......).........................
>X94942.1/2086-2300
CCGACGUGGACAUCCAGCGAGCUGCUCUCCUGGCUCUGUCCUGGUGGCGUAUGGGAGCGUAGCUUUCAGCAGAGACGUACAUUCCCGUUCCACACCGUCGGAGAGAAAGCUCUGUCCCCGGCCUCUGGCUGGCGUGGACGAGCGUCUGUAUAUUCCUACAUCUUCCCAGAGUCCUACUGGACCGUUACUGGGGAGCUAAACCAUGCAGUGCACAU
.................................(...)............................(....)...............................................................................................................................................
>AACZ03060756.1/41573-41365
CCAACAUGGAUAGCCUGGGAGGUCACUCUCCCCAGGCUCUGUGGAAGUGGUGUUGGGGAGCAUAGACGUUUGGUCCAUGAAGUACAGUACAGCCCCUUUCCACAAUGUUGGAGAUGAAGCUGGGUCUCCUGUCUGCGCCUGCAUAUUCCUAUAGCUUCCCUGAGUCCUGUGGAUGAUGACUGGUGAGACAAAUCGUGCAGGAAACAUGU
....................................................................................................................................(...)........................(....)..........................................
>X71081.1/6865-7085
CCAACGUGGAUAUCUCAUGAGGUUACUCAUGGGCUCUGUCUUGGUGGCGUAUGGGAGCGUCGCCCUGUGAGGCGCAGUGACGUAUAAUCCCCUUCCACAACGUUGGAGAACAAGCAUGUCCCUAGCCUUCGGCUGGUGUGGGCAGCACCCUGUAUAUUCCUACAACUUCCCAGAGCCCUCGGGCAAUGACUGAGGAGACAAACCAUGCAGGACACACAAAU
...............................................................................(...)..........................................(...)..........................................................................................
>AAGV020314116.1/757-553
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGCAGGGGAGCACAGGGCUCUGCCCAGUGAUGUACAGUCCCAUUCCACAACGUUGGAGAGGAAGCCGGGCUCUCGAGCCCCCACCUGCAUAUUCCUACAGCUUCUCUGAGUCUUAUUGACAAUGACUGAGGAGAAAAACCAUGCAGGAAACAUAU
...................................................................(...)......................................................................................(.....)........................................
>AY948718.1/2-221
UCGACAUGUGACUAGCGAUCCUCUUCGGGGUUGAUUGCUUUUCUUAGUGGAGCAUCGGGGGCUUUCUGUAAAGUUGACUCCGAUCCACCUUGUCGUAUACCAACAGUCUGUGUGGCCCUCUACCGCUAUUUGAGAUGCCCGGGCUGGAUUGCAUAUUCCUUAUCCUUCCGUAGAUCCUAUGGGUCCGUGACGGUUAGGACAAACCAUGCAAAUUACAAAU
.................................................................(...)...........................(...)......................................................................................................................
>AJ306558.1/1-213
UCAACAUGGACAUCCGUUGAGGUUACUUGUGGGUCUGUCCAAGUGGUAUAUGGGAGUAUAGCCCUAAGUGCAGUGAUGUACAGUCCCCUUCCACAGUGUUGAAGAGCAAGCCCUGUCCCUGGUUCUAGAGCUGAUGAGGGCAGACUCCUUUAUAUUCCUAUAACUUCUCAGUCUCUAGACAAUUACUGAGGAGAAACCAUGCAGGGUGCAACU
.......................................................(...)...............................................................................(......)..................................................................
>AJ306560.1/1-214
CCAAUAUGGUCAUCCAUUGAGGUUACUCAUGGCUCUGUCCAAGUGGUGUAUAUGGGAGCAUAGCCCUAAGUGCAGUGAUAUACAAUCCCCUUCCACAGUGUUGAAGAGCAAGCCUGUCUCUGGUUCUAGAGCUGAUGAGAACAGCAUUCUAUAUAUUUUUAUAACUUCUCAGUCUCUAGACAAUUACUGAGGAGAAACCAUGCAGGUUACAACU
...................................................................................................................(...)......................................................(......)................................
>AJ006836.1/1091-1295
CCAACGUGGAUAUCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCUAGUGGCGAACGGGAGCUUAGGGCAUUGCCCGGUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUUCGAGUCUGCGCCUGCAUAUUCCUACGACUUCUCAGAGUCCCGUGGACCAUGACUGAGGAGACAAACCAUGCAGGAAACAAAA
......................(...)......................................................(...).......................................................................................................................
>AAFC03094567.1/12296-12093
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGAACGGGAGCGUAGGGCUCUGCUCAGUGACGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCCUGUGGACAAUGACUGAGGAGACAAACCAUGCAGGAAACAUCU
.................................................................................................................................................................(...)...................(...)..............
>AAFR03060641.1/7668-7867
CCAACGAGGAUAUCCUGAGGUCACUCCUCCGGCUCUGUCCAGGUGGCAAAAGGGAGCUUAGGGCUUUUGCCCUGUGAUGUACAGUCCCAUUCCACAACGUUGGAUAUCAAGCUGGGCUUUGUGUCUGCACCUGCAUAUUCCUAAACCUUCUCAGAGUCUUUGGACUAUGACUGAGGAGACAAACCAUGCAGGAAACAAUU
....................(...).....................................................(...).....................................................................................................................
>AAVX01060057.1/357-135
CCAAUGAGGGCGUCCAUGGGAGUUCGCUCUCCCGUGGCUCUGUCCGAGUGGCGUAUGGGAGCGUAGGCCUCUGGGCCCUUGACGUACAGUCCCAUUCCACAGCGUUGGAGAGAGUGCCUGUCCCCGGCCCUUGGGCUGGUGAGGACAGCAGCCUGUAUAUUCCUAUACCUUCUCAGAGUCCAGCGGGCAAUGACUGAGGAGAUAAACCAUGCAGGGUACAAUU
...................................................................................(...).........................................................................................(...).........................................
>AACN010016018.1/3148-3351
CCAACGUGGAUACUCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGUAUGGGAGCUCAGGGCUCUGCCCCGUGACGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCCGGGCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCCUGUGGACCAUGACUGAGGAGACAAACCAUGCAGGAAACAUCU
....................................................................(...).........................................................(....)....................................................................
>BX276180.5/20672-20892
CCAACGUGGACAUCCCGUGAGAUGCCUCUCAUGUGGCUCUGUCCAUGUGGCGUAUGGGAGCGUAGCACUUCGGUGUUGUGACGUACAGUCCCGUUCCACGACGUUGGAUAGCAAGCUUGUCCCCGGCCUCUGGCUGGUGUGGACUACGUCCUGUAUAUUCCUACAUCUUCCCAGAGCCCUUUGGGCCAUUACUGGGGAGGUAAACCAUGCAGUGCACACUA
..................................................................................(...)........................................................(...).........................................................................
>L22738.1/523-728
CCAACGUGGAUACACCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
....................................................................(...).....................................................(....)..........................................................................

>FJ915988.1/4-119
CCCUUUCCACAACGUUGGAGAUAAAGCUGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUGGACAAUGACUGGGGAGACAAACCAUGCAGGAAACAACC
.........................................................................(...)......................................
.........................................................................(...)...................(...)..............
>U64698.1/3-117
UCUCCCCGGGCUCUGUCCUAGUGGCGUACGGGAGCUUAGGGCACUGCCCGGUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUCGAGUCUGCGCCUGCAUAU
..........(...)....................................................................................................
..........(...)........................................(...).......................................................
>AJ493425.1/3-138
GGUUACUAGUGGCUCUGUCCAAGUGGUAUUUGGGAGCAUAGCUCUAAGUGCAGUGGUGUACAAUCCCCUUCCACAGUGUUGUAGAGCAAGUCUGCCUCUGGUUCUAGAGCUGACGAGGACAGCAUCCUAUAUAUUU
............(...).......................................................................................................................
............(...).....................................................................................................(.....)...........
>U64697.1/3-117
UCUCCCCGGGCUCUGUCCUAGUGGCGUACGGGAGCAUAGGGCACUGCCCAAUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUCGAGUCUGCGCCUGCAUAU
..........(...)....................................................................................................
..........(...)........................................(...).......................................................
>AJ306558.1/1-213
UCAACAUGGACAUCCGUUGAGGUUACUUGUGGGUCUGUCCAAGUGGUAUAUGGGAGUAUAGCCCUAAGUGCAGUGAUGUACAGUCCCCUUCCACAGUGUUGAAGAGCAAGCCCUGUCCCUGGUUCUAGAGCUGAUGAGGGCAGACUCCUUUAUAUUCCUAUAACUUCUCAGUCUCUAGACAAUUACUGAGGAGAAACCAUGCAGGGUGCAACU
.......................................................(...).........................................................................................................................................................
.......................................................(...)...............................................................................(......)..................................................................
>AACN010016018.1/3148-3351
CCAACGUGGAUACUCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGUAUGGGAGCUCAGGGCUCUGCCCCGUGACGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCCGGGCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCCUGUGGACCAUGACUGAGGAGACAAACCAUGCAGGAAACAUCU
....................................................................(...)...................................................................................................................................
....................................................................(...).........................................................(....)....................................................................
>AAFR03060641.1/7668-7867
CCAACGAGGAUAUCCUGAGGUCACUCCUCCGGCUCUGUCCAGGUGGCAAAAGGGAGCUUAGGGCUUUUGCCCUGUGAUGUACAGUCCCAUUCCACAACGUUGGAUAUCAAGCUGGGCUUUGUGUCUGCACCUGCAUAUUCCUAAACCUUCUCAGAGUCUUUGGACUAUGACUGAGGAGACAAACCAUGCAGGAAACAAUU
....................(...)...............................................................................................................................................................................
....................(...).....................................................(...).....................................................................................................................
>AAFC03094567.1/12296-12093
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGAACGGGAGCGUAGGGCUCUGCUCAGUGACGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCCUGUGGACAAUGACUGAGGAGACAAACCAUGCAGGAAACAUCU
.................................................................................................................................................................(...)......................................
.................................................................................................................................................................(...)...................(...)..............
>X94942.1/2086-2300
CCGACGUGGACAUCCAGCGAGCUGCUCUCCUGGCUCUGUCCUGGUGGCGUAUGGGAGCGUAGCUUUCAGCAGAGACGUACAUUCCCGUUCCACACCGUCGGAGAGAAAGCUCUGUCCCCGGCCUCUGGCUGGCGUGGACGAGCGUCUGUAUAUUCCUACAUCUUCCCAGAGUCCUACUGGACCGUUACUGGGGAGCUAAACCAUGCAGUGCACAU
.................................(...).................................................................................................................................................................................
.................................(...)............................(....)...............................................................................................................................................
>X71081.1/6865-7085
CCAACGUGGAUAUCUCAUGAGGUUACUCAUGGGCUCUGUCUUGGUGGCGUAUGGGAGCGUCGCCCUGUGAGGCGCAGUGACGUAUAAUCCCCUUCCACAACGUUGGAGAACAAGCAUGUCCCUAGCCUUCGGCUGGUGUGGGCAGCACCCUGUAUAUUCCUACAACUUCCCAGAGCCCUCGGGCAAUGACUGAGGAGACAAACCAUGCAGGACACACAAAU
..............................................................................................................................(...)..........................................................................................
...............................................................................(...)..........................................(...)..........................................................................................
>AAPE02043788.1/16918-17121
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGCAGGGGAGCAUAGGGCUCUGCCCCGUGAUGUACAGUCCCUUUCCACAACGUUGGAGAGAAAGCCGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCCUGUGGACGAUGACUGAGGAGACAAACCAUGCAGGAAACAUCU
...................................................................(...)....................................................................................................................................
...................................................................(...)..........................................................(....)....................................................................
>AAQQ01135328.1/378-177
CCAACGUGGAUACUCUCGGGAGGUCUCUCCCCGGGCUCUGUCCAGGUGGCAUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUUAUGUCUGCACCUGCAUAUUCCUACGACUUCUCAGAGUCUGUGGACUAUGACUGAGGAGACAAACCAUGCAGGAAACAAAA
..................................................................(...)...................................................................................................................................
..................................................................(...)...............................................................................(....)..............................................
>X94942.1/2747-2965
CCGACGUGGACAUCCAGCGAGCUGCUCUCCUGGCUCUGUCCUGGUGGCGUAUGGGAGCGUAGCUUUUCAGCAGAGACGUACAUUCCCGUUCCACACCGUCGGAGAGAAAGCUCUGUCCCCGGCCUCUGGCUGGCGUGGACGAGCGUCCUGUAUAUUCCUACAUCUUCCCAGAGUCCUACUGGGCCGUUACUGGGGAGCUAAACCAUGCAGUGCACAUCA
.................................(...).....................................................................................................................................................................................
.................................(...).............................(....)..................................................................................................................................................
>AJ306560.1/1-214
CCAAUAUGGUCAUCCAUUGAGGUUACUCAUGGCUCUGUCCAAGUGGUGUAUAUGGGAGCAUAGCCCUAAGUGCAGUGAUAUACAAUCCCCUUCCACAGUGUUGAAGAGCAAGCCUGUCUCUGGUUCUAGAGCUGAUGAGAACAGCAUUCUAUAUAUUUUUAUAACUUCUCAGUCUCUAGACAAUUACUGAGGAGAAACCAUGCAGGUUACAACU
...................................................................................................................(...)..............................................................................................
...................................................................................................................(...)......................................................(......)................................
>AAHX01040057.1/46568-46771
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCUAGUGGCGUACGGGAGCAUAGGGUACUGCCCGAUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGGAGCUGGGCUUCGAGUCUGCGCCUGCAUAUUCCUACGACUUCUCAGAGUCCUGUGGACCGUGACUGAGGAGACAAACCAUGCAGGAAACAAAA
.................................................................................................................................................................(...)......................................
.......................................................................................................................(...)......(....)....................................................................
>AAGV020314116.1/757-553
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCGCAGGGGAGCACAGGGCUCUGCCCAGUGAUGUACAGUCCCAUUCCACAACGUUGGAGAGGAAGCCGGGCUCUCGAGCCCCCACCUGCAUAUUCCUACAGCUUCUCUGAGUCUUAUUGACAAUGACUGAGGAGAAAAACCAUGCAGGAAACAUAU
...................................................................(...).....................................................................................................................................
...................................................................(...)......................................................................................(.....)........................................
>AACZ03060756.1/41573-41365
CCAACAUGGAUAGCCUGGGAGGUCACUCUCCCCAGGCUCUGUGGAAGUGGUGUUGGGGAGCAUAGACGUUUGGUCCAUGAAGUACAGUACAGCCCCUUUCCACAAUGUUGGAGAUGAAGCUGGGUCUCCUGUCUGCGCCUGCAUAUUCCUAUAGCUUCCCUGAGUCCUGUGGAUGAUGACUGGUGAGACAAAUCGUGCAGGAAACAUGU
....................................................................................................................................(...)........................................................................
....................................................................................................................................(...)........................(....)..........................................
>AJ006836.1/1091-1295
CCAACGUGGAUAUCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCUAGUGGCGAACGGGAGCUUAGGGCAUUGCCCGGUGAUGUACAGUCCCUUUCCACAACGUUGGAGAUGAAGCUGGGCUUUCGAGUCUGCGCCUGCAUAUUCCUACGACUUCUCAGAGUCCCGUGGACCAUGACUGAGGAGACAAACCAUGCAGGAAACAAAA
..................................................................................................................................................................(...)......................................
......................(...)......................................................(...).......................................................................................................................
>BX276180.5/20672-20892
CCAACGUGGACAUCCCGUGAGAUGCCUCUCAUGUGGCUCUGUCCAUGUGGCGUAUGGGAGCGUAGCACUUCGGUGUUGUGACGUACAGUCCCGUUCCACGACGUUGGAUAGCAAGCUUGUCCCCGGCCUCUGGCUGGUGUGGACUACGUCCUGUAUAUUCCUACAUCUUCCCAGAGCCCUUUGGGCCAUUACUGGGGAGGUAAACCAUGCAGUGCACACUA
..................................................................................................................................................................................(...)......................................
..................................................................................(...)........................................................(...).........................................................................
>L22738.1/523-728
CCAACGUGGAUACACCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
....................................................................(...).....................................................................................................................................
....................................................................(...).....................................................(....)..........................................................................
>X71081.1/3489-3711
UCAAUGUGGAUAUCCUGUGAGGUUACUCUCAUGGGCUCUGUCCAAGUGGCGUAUGGGAGCGUAGUGCUUUAUGGCGCAGUGACGUACAAUCCCUUUCCACAACAUUGAAGAACAAGCAUGUCCUCGGCCAUUAGGCUGUUGUGGGCAGCGUCCUGUAUAUUCCUACAACUUCCCAAAGCCAAAAUGGCUCUUACUGGGGAGACAAACCAUGCAGGUUACAUCU
...................................................................................(...).......................................................................................................................................
...................................................................................(...)......................................................................................................(......).........................
>ABDC01498416.1/762-965
CCAACGUGGAUACCCUGGGAGGUCACUCUGCCCAGGCUCUGUCCAGGUGGCAUAGGGGAGCAUAGGGCUCUGCCCCGUGACGUACAGUCCCUUUCCACAACGUUGGAGAUAAAGCUGGGCUUUGUGUCUGCGCCUGCAUAUUCCUACGACUUCCCAGAGUCCUGUGGACAAUGACUGGGGAGACAAACCAUGCAGGAAACAUGU
......................(...).................................................................................................................................................................................
......................(...)......................................................(...)......................................................................................................................
>AAGU03057465.1/82998-83202
CCAACGUGGAUAUUCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCUGGUGGCGCAGGGGAGCAUAGGGCUCUGCCCCUUGAUGUACAAUCCCUUUCCACGACGUUGGAGAUAAAGCCGGGCCUUGAGUCUGCGCCUGCAUAUUCCUACAGCUUCUCAGAGUCGUGCAGACAAUGACUGAGGAGACAAACCAUGCAGGAAACAUGU
....................................................................(...)....................................................................................................................................
....................................................................(...).........................................................................................(...)......................................
>L07382.1/2-208
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
.....................................................................(...).....................................................................................................................................
.....................................................................(...).....................................................(....)..........................................................................
>AJ493422.1/1-216
CCAAUAUGGUAAUCCGUUGAGGUUACUUGUGGCUCUGUCCAAGUGGUAUAUGGGAGCAAAGCCCUAAGUGCAAUGGUGUACAAUCCCCUUCCACAGUGUUGAAGAGCAAGCCUGUCUCUGAUUCUAGAGCUGAUGUGGAUAGCAUCCUAUAUAUUUUAUUUUAUAACUUCUCAGUCUCUAGACAAUUACUGAGGAGAAACCAUGCAGGGUGCAACU
...................................................................................................................(...)................................................................................................
...................................................................................................................(...)..........................................................(....)................................
>AAVX01060057.1/357-135
CCAAUGAGGGCGUCCAUGGGAGUUCGCUCUCCCGUGGCUCUGUCCGAGUGGCGUAUGGGAGCGUAGGCCUCUGGGCCCUUGACGUACAGUCCCAUUCCACAGCGUUGGAGAGAGUGCCUGUCCCCGGCCCUUGGGCUGGUGAGGACAGCAGCCUGUAUAUUCCUAUACCUUCUCAGAGUCCAGCGGGCAAUGACUGAGGAGAUAAACCAUGCAGGGUACAAUU
...................................................................................(...).......................................................................................................................................
...................................................................................(...).........................................................................................(...).........................................
>AY948718.1/2-221
UCGACAUGUGACUAGCGAUCCUCUUCGGGGUUGAUUGCUUUUCUUAGUGGAGCAUCGGGGGCUUUCUGUAAAGUUGACUCCGAUCCACCUUGUCGUAUACCAACAGUCUGUGUGGCCCUCUACCGCUAUUUGAGAUGCCCGGGCUGGAUUGCAUAUUCCUUAUCCUUCCGUAGAUCCUAUGGGUCCGUGACGGUUAGGACAAACCAUGCAAAUUACAAAU
................................................................................................................................................................................(...).......................................
.................................................................(...)...........................(...)......................................................................................................................
>X94942.1/3702-3921
CCGACGUGGACAUCCAGCGAGCUGCUCUCCUGGCUCUGUCCUGGUGGCAGUAUGGGAGCGUAGCUUUUCAGCAGAGACGUACAUUCCCGUUCCACACCGUCGGAGAGAAAGCUCUGUCCCCGGCCUCUGGCUGGGGUGGACGAGCGUCCUGUAUAUUCCUACAUCUUCCCAGAGUCCUACUGGACCGUUACUGGGGAGCUAAACCAUGCAGUGCACAAAC
............................................................................................................................(...)...........................................................................................
............................................................................................................................(...)...............................................(....)......................................
>AAPN01430738.1/56-260
CCAACAGGGACACCCGGGGAGGGUCGUUGCCCUCCCCGGCUCUGUCCAAGCGGCGUAUGGGAGCGUAGGGGUCACCCCGUGACGUACAGUCCCGUUCCGUGCUGUUGGAGAUCAAGCCGGGCUUCGUGUCUGCGCCUGCAUAUUCCUACUGCUUCUCUGAGCCCCCGGGCCGUGACAGAGGAGAGAAACCAUGCAGGAUACAAGC
...................................................................................(...).....................................................................................................................
...................................................................................(...)............................................(....)...................................................................
>AJ306564.1/1-212
CCAAUAUGGUCAUCCAUUGAGGUUACUUGUGUCUCUGCCCAAGUGGUAUAUGGGAGCAUAGCCCUAAGUGCAGUGAUGUACAAUCCCCUUCCACAGUGUUGAAGAGCAAGCCUGUCUCUGGUUCUAGAGCUGAUGAGGACAGCAUCCUACAUAUUUUUAUAACUUCUCUGUCUCUAGAUAAUUACUGAGGAGAAACUAUGCAGGUUGCAACU
.......................................................(...)........................................................................................................................................................
>AAKN02028629.1/12706-12503
CCAACGUGGAUACCCCGGGAGGUCACUCUCCCCGGGCUCUGUCCAGGUGGCAUAGGGGAGCAUAGGGCUCUGCCCCGUGAUGUACAGUCCCUUUCCACGACGUUGGAGAAGAAGCCGGGCCUUGUGUCUGCGCCUGCAUAUUCCUACAACUUCUCAGAGUCCUUUGGACAGUGACUGAGGAGAUAAACCAUGCAGGAAACAGUC
...................................................................(...)....................................................................................................................................
>AANH01008512.1/7650-7868
CCGACGUGGUCAUCCAGCGAGGUCACUCUCCUGGCUCUGUCCUGGUGGCGUUAUGGGAGCGUAGCGCUCAGCUGAGACGUACAAUCCCGUUCCACAGCGUCGGAGACAAAGCUCUGACCCCGGCCUCCGGUCGGUGGGGACGAGCGUCCUGCAUAUUCCUACAUCUUCCCAGAGUCCUUUGGGCCGUGACUGGGGGGCUAAACCAUGCAGUGCACAACA
............................................................................................................................(...)..........................................................................................
>AJ493421.1/1-189
CCACUAUAGUCCUCCAUUGAGGUUACUUGUGGCUCUGUCUCUGUGUGUGUAUGUGUGUAAUUCCCUUCCACGGUGUUGAAGAGUAAGCCUGUCCCUGGUUUUAGAGUCAAUAAGGGCAGCAAUCUUUAUAUUCCUAUAACUUCUCCGUCUCUAGACAGUUACUGAGAAGGAACCAUGCAGGAUGAAGCU
....................................(...)....................................................................................................................................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (YNY) < 0.001 1.85
L07382.1/2-208
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
...................................................................................................1...................................................................................................2.......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
2 (.NNC.) < 0.001 1.09
L07382.1/2-208
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
...................................................................................................1...................................................................................................2.......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 .N. (URB) < 0.001 0.573
2 .Y. (URB) < 0.001 0.612
3 G(UAC)R < 0.001 38
L07382.1/2-208
CCAACGUGGAUACACCCUGGGAGGUCACUCUCCCCGGGCUCUGUCCAAGUGGCGUAGGGGAGCAUAGGGCUCUGCCCCAUGAUGUACAAGUCCCUUUCCACAACGUUGGAAAUAAAGCUGGGCCUCGUGUCUGCGCCUGCAUAUUCCUACAGCUUCCCAGAGUCCUGUCGACAAUUACUGGGGAGACAAACCAUGCAGGAAACAGCC
...................................................................................................1...................................................................................................2.......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).