D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-515   (Rfam: RF00639)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
Y(UG(U))
(G()U)
U(G(U))
(.YRRR.)
G(G(A))
100.0
100.0
100.0
97.5
95.0
(G()U)
U(G(U))
U(G(U))

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.5 %
(± 0.141 %)
Decision tree:

5-fold cross-validation: 92.9 %
(± 9.95 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 92.6 %
(± 9.38 %)
of AADD01166735.1/1220-1306
AADD01166735.1/1220-1306
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
(((((((((((.((((((((((((.((((((((((..((.((.....)))).)))))))))).)))))))))))).)))))))))))
.........1.........2.........3.........4.........5.........6.........7.........8.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567

abstract shape: ()

Number of sequences
Structure ORBs (out of 40) (%)
1 Y(UG(U))
 38 95.0
>AANU01181651.1/3882-3966
CCUCAUGCAGUGACACUCUAAAUGGCAGCACUGUCUGUGGUCUAAAACAAGAUCGUGCAGCCUUUUAGAGUGUUACUGUGUGAGA
..................................(..(...........))..................................
>AADD01166738.1/2140-2226
UCUCAGGCUGUGUCCCUCUAGAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAAUGGUUCCCUUUAGAGUGUUACGCUUUGAGA
..................................(..(............).)..................................
>AANU01181649.1/2975-3064
UCUCAGGCUGUGACUAUCUGGAGGUAAGAAGUGCUUACUGUUGUCUUAAAGAAAAGAAAGUGCUUUCUUUCCGAGGGUUACGGUUUGAGA
.....................................(..(............).)..................................
>AANU01181661.1/7385-7471
UCUCAUGCAGUCAUUCUCCAAUGGGAAGCACCUUCUGUGGUCUGAAAGCAAGCAGAGGGCCUCCUUUUGGAGCAUUACUGUUUGAGA
..................................(..(............))...................................
>AANU01181659.1/2591-2677
UUUCAGGCUGUGACCCUCUUGAGGGAAGCACUUUCUGUUGUCUGAAUAAAAAGAAAGUGCUUCCUUUUAGAGGCUUACGGUCUGAGA
..................................(..(............).)..................................
>AADC01140684.1/18074-18158
UCUCAUGAUGUGACCAUCUGGAGGUAAGAAGCACUUUGUGUUUUGUGAAAGAAAGUGCUUCCUUUCAGAGGGUUACUCUUUGAGA
...................................(..(............))................................
>AANU01181659.1/3404-3490
UCUCAGGCUCUAACCCUCUAGAGGGAAGCGCUUUCUGUCGUCUGAGAGAGAAGAAAGUGCAUCCUUUUAGAGGAUUACGGUUUGAGA
..................................(..(............).)..................................
>AANU01156321.1/745-831
UCUCGUGCUGUGACCCUUUAGAGGGAAGCACUUUCUGUUGUCUGAAAACAAAGAAUGUGCAUCCUUUCAGAGGGUUACUCUUUGAGA
..................................(..(............).)..................................
>AADC01140615.1/1296-1380
UCUCAAGCUGUGACUGCAAAGGGAAGCCCUUUCUGUUGUCUAAAAGAAAAGAAAGUGCUUCCCUUUGGUGAAUUACGGUUUGAGA
................................(..(............).)..................................
>AANU01181654.1/1265-1351
UCUCAUGAUGUGACUCUCUAGAGGAAAGCGCUUACUGUUGGCUAAAAAAAUAGGAAGCGCUUCUCUUUAGAGUGUUACGCUUUGAGA
..................................(..(............).)..................................
>AC011453.4/89941-89855
UCUCCUGCUGUGACCCUCAAGAUGGAAGCAGUUUCUGUUGUCUGAAAGGAAAGAAAGUGCUUCCUUUUUGAGGGUUACUGUUUGAGA
..................................(..(............).)..................................
>AC200331.2/156950-156864
UCUCGUGCUGUGACCCACUAGAGGGAAGCACUUUCUGUCGUCUGAAAGAAAAGAACGCGCUUCCCUAUGGAGGGUUACCCUUUGAGA
..................................(..(............).)..................................
>AC011453.4/70442-70356
UCCCAUGCUGUGACCCUCUAGAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAGUGCAUCCUUUUAGAGGUUUACUGUUUGAGG
..................................(..(............).)..................................
>AADD01166735.1/7661-7745
UCUCAGGCAGUGACCCUCUAGAUGGAAGCACUGUCUGUUGUCUAAGAAAAGAUCGUGCAUCCUUUUAGAGUGUUACUGUUUGAGA
..................................(..(...........))..................................
>AC200331.2/109718-109632
UCUUAUGCUGUGACCCUCCAAAGGGAAGAACUUUCUGUUGUCUAAAAGAAAAGAACGCACUUCCCUUUAGAGUGUUACCGUGUGAGA
..................................(..(............).)..................................
>AADD01166740.1/3349-3438
UCUCAGGUUGUGACCUUCUCGAGGAAAGAAGCACUUUCUGUUGUCUGAAAGAAAAGAAAGUGCUUCCUUUCAGAGGGUUACGGUUUGAGA
.....................................(..(............).)..................................
>AC011453.4/59401-59315
GCUCAGGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGCUUGAAAGAAGAGAAAGCGCUUCCUUUUAGAGGAUUACUCUUUGAGA
..................................(..(............).)..................................
>AC011453.4/54650-54564
UCUCAUGCUGUGACCCUACAAAGGGAAGCACUUUCUCUUGUCCAAAGGAAAAGAAGGCGCUUCCCUUUGGAGUGUUACGGUUUGAGA
.....................................(..(.......)).....................................
>AANU01181659.1/14614-14698
UCUCAGGCUGUGACUCUCCAAAGGGAAGAAUUUUCUGUUGCCUGAAAGAAAACGCACUUCCCUUUCGAGUGUUACCGUUUUGAGA
..................................(..(........)).....................................
>AADD01166735.1/1220-1306
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
..................................(..(............).)..................................
>AADD01166735.1/8855-8942
UCCCAUGCUGUGACCCUCUAGAGGAAGCACUUUCUGUUUGUUGUCUGAGAAAAAACAAAGUGCUUCCCUUUAGAGUUACUGUUUGGGA
.....................................(..(...........))..................................
>AANU01181659.1/6633-6719
UCUCAGGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGGAAGAAAAGAAUGCGCUUCCCUUUAGAGGGUUACUCUCUGAGA
..................................(..(............).)..................................
>AANU01181649.1/9934-10020
UUUCAUGCUGUGACCCUACAAAGGGAAGCCCUUUCUGUUGUCUAAACUAAAAGAAAGUGCUUCUCUUUGCUGGGUUACGGUUUGAGA
..................................(..(............).)..................................
>AANU01181659.1/12136-12222
UGUCAGGCUGUGACCCUCCAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAAGCAAAGCGCUCCCCUUUAGAGGAUUACGGUUUGAGU
..................................(..(............))...................................
>AANU01181649.1/13118-13204
UCUCAUGCUGUGACUCUCUGGACAGAAGCGGUUUCUGUUGUCUGAAAGAAAACAAAUCGCUUCUGUCUAGAGUGUUUCGGUUUGAGA
..................................(..(............).)..................................
>AANU01181661.1/14497-14582
UCCCAGGCUGUGACUCUACAAAGGAAAGCACUUUCUGUUGUCGAAAGAAAAGAAAGCGCUUCCCUUUUGAGAAUUACGGUUUGAGA
..................................(..(............))..................................
>AADA01301557.1/9525-9439
UGUCAGGCUGUGUCCCUCUACAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAGUGCUUCCUUUUAGAGGGUUGCUGUUUAAGA
..................................(..(............).)..................................
>AADD01166740.1/446-532
UCUCAAGCUGUGAGUCUACAAAGGAAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAUCGCUUCCCUUUGGAGUGUUACGGUUUGAGA
..................................(..(............).)..................................
>AACZ03117218.1/20332-20246
UCUCAGGCUGUGACCCUCCAGAGGGAAGUACUUUCUGUUGUCUGAGAGAAAAGAAAGUGCUUCCCUUUGGACUGUUGCGGUUUGAGU
..................................(..(............).)..................................
>EU086470.1/45033-45119
UCUCAUGCAGUCAUUCUCCAAAAGGGAGCACUUUCUGUUGUCUGAAAGAAAACAAAGUGCCUCCUUUUAGAGUGUUACUGUUUGAGA
..................................(..(............).)..................................
>AC011453.4/83493-83407
UCUCAGGCUGUGACCCUCUAAAGGGAAGCGCUUUCUGUGGUCAGAAAGAAAAGCAAGUGCUUCCUUUUAGAGGGUUACCGUUUGGGA
..................................(..(............).)..................................
>AANU01181658.1/2015-2101
UUUCAUGCUGUGACUCUCUGGAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAACAAAGCGCUUCUCUUUAGAGAGUUACGGUUUGAGA
..................................(..(............).)..................................
>ABBA01068200.1/49909-49819
UCUCAGGCUGUGGCCAUCUAGAGGUAAGAAGCACUUUCUGUUGUCUUAAAGAAAAGAAAGUCCUUUUUUUUUUUUUUUUUUUUUUUUGAGA
.....................................(..(............).)...................................
>AANU01181661.1/11625-11711
UCUCAGUCUGUGACCCUCUAGAAGGAAGCACUUUCUGUUGUUUGAAAGAAAAGAAAGUGCAUCAUUUUAGAGGAUUACAGUUUGAGA
..................................(..(............).)..................................
>AANU01181652.1/1375-1461
UAUCGGGCUGUGACCCUCUAAAGGGAAGCGCUUUCUGUUGUGUGAAAGAAAACGAAGCGCUUCUCUUUGGAGCGUUACAGUUUGAGA
..................................(..(............)..).................................
>ABBA01184320.1/134-221
UCCCAUGCUGUGACCCUCCAAAGGGAAGCGCUUUCUGUUUGUUUUCUCUUAAACAAAGUGCCUCCCUUUAGAGUGUUACCGUUUGGGA
..................................(..(............)..)..................................
>AANU01181659.1/8603-8689
UCUCAGGCUGUGACCCUCUAGAGGGAAGCACUUUAUCUUGUGUGAAAGGAAAGAAAGCGCUUCCCUUCAGAGGAUUACUCUUUGAGA
.....................................(..(.........))...................................
>AC200331.2/128607-128521
UCUCAUGAUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGGCUAAAAGAAAAGAAAGCGCUUCCCUUCAGAGUGUUACGCUUUGAGA
..................................(..(............).)..................................
2 Y(UG(U))
(G()U)
 32 80.0
>AANU01181649.1/9934-10020
UUUCAUGCUGUGACCCUACAAAGGGAAGCCCUUUCUGUUGUCUAAACUAAAAGAAAGUGCUUCUCUUUGCUGGGUUACGGUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AADD01166738.1/2140-2226
UCUCAGGCUGUGUCCCUCUAGAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAAUGGUUCCCUUUAGAGUGUUACGCUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AADD01166735.1/1220-1306
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AADD01166735.1/8855-8942
UCCCAUGCUGUGACCCUCUAGAGGAAGCACUUUCUGUUUGUUGUCUGAGAAAAAACAAAGUGCUUCCCUUUAGAGUUACUGUUUGGGA
..........(.(........................(..(...........)).....................).)..........
>AANU01181659.1/6633-6719
UCUCAGGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGGAAGAAAAGAAUGCGCUUCCCUUUAGAGGGUUACUCUCUGAGA
..........(.(.....................(..(............).).....................).)..........
>AADD01166740.1/446-532
UCUCAAGCUGUGAGUCUACAAAGGAAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAUCGCUUCCCUUUGGAGUGUUACGGUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AANU01181649.1/2975-3064
UCUCAGGCUGUGACUAUCUGGAGGUAAGAAGUGCUUACUGUUGUCUUAAAGAAAAGAAAGUGCUUUCUUUCCGAGGGUUACGGUUUGAGA
..........(.(........................(..(............).).....................).)..........
>AC011453.4/83493-83407
UCUCAGGCUGUGACCCUCUAAAGGGAAGCGCUUUCUGUGGUCAGAAAGAAAAGCAAGUGCUUCCUUUUAGAGGGUUACCGUUUGGGA
..........(.(.....................(..(............).).....................).)..........
>AANU01181649.1/13118-13204
UCUCAUGCUGUGACUCUCUGGACAGAAGCGGUUUCUGUUGUCUGAAAGAAAACAAAUCGCUUCUGUCUAGAGUGUUUCGGUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AC011453.4/59401-59315
GCUCAGGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGCUUGAAAGAAGAGAAAGCGCUUCCUUUUAGAGGAUUACUCUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AACZ03117218.1/20332-20246
UCUCAGGCUGUGACCCUCCAGAGGGAAGUACUUUCUGUUGUCUGAGAGAAAAGAAAGUGCUUCCCUUUGGACUGUUGCGGUUUGAGU
..........(.(.....................(..(............).).....................).)..........
>AC200331.2/156950-156864
UCUCGUGCUGUGACCCACUAGAGGGAAGCACUUUCUGUCGUCUGAAAGAAAAGAACGCGCUUCCCUAUGGAGGGUUACCCUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AANU01181661.1/14497-14582
UCCCAGGCUGUGACUCUACAAAGGAAAGCACUUUCUGUUGUCGAAAGAAAAGAAAGCGCUUCCCUUUUGAGAAUUACGGUUUGAGA
..........(.(.....................(..(............)).....................).)..........
>AC011453.4/89941-89855
UCUCCUGCUGUGACCCUCAAGAUGGAAGCAGUUUCUGUUGUCUGAAAGGAAAGAAAGUGCUUCCUUUUUGAGGGUUACUGUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AANU01181661.1/11625-11711
UCUCAGUCUGUGACCCUCUAGAAGGAAGCACUUUCUGUUGUUUGAAAGAAAAGAAAGUGCAUCAUUUUAGAGGAUUACAGUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AANU01181659.1/12136-12222
UGUCAGGCUGUGACCCUCCAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAAGCAAAGCGCUCCCCUUUAGAGGAUUACGGUUUGAGU
..........(.(.....................(..(............))......................).)..........
>AC200331.2/128607-128521
UCUCAUGAUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGGCUAAAAGAAAAGAAAGCGCUUCCCUUCAGAGUGUUACGCUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AANU01156321.1/745-831
UCUCGUGCUGUGACCCUUUAGAGGGAAGCACUUUCUGUUGUCUGAAAACAAAGAAUGUGCAUCCUUUCAGAGGGUUACUCUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AANU01181659.1/2591-2677
UUUCAGGCUGUGACCCUCUUGAGGGAAGCACUUUCUGUUGUCUGAAUAAAAAGAAAGUGCUUCCUUUUAGAGGCUUACGGUCUGAGA
..........(.(.....................(..(............).).....................).)..........
>AC200331.2/109718-109632
UCUUAUGCUGUGACCCUCCAAAGGGAAGAACUUUCUGUUGUCUAAAAGAAAAGAACGCACUUCCCUUUAGAGUGUUACCGUGUGAGA
..........(.(.....................(..(............).).....................).)..........
>AANU01181658.1/2015-2101
UUUCAUGCUGUGACUCUCUGGAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAACAAAGCGCUUCUCUUUAGAGAGUUACGGUUUGAGA
..........(.(.....................(..(............).).....................).)..........
>AANU01181651.1/3882-3966
CCUCAUGCAGUGACACUCUAAAUGGCAGCACUGUCUGUGGUCUAAAACAAGAUCGUGCAGCCUUUUAGAGUGUUACUGUGUGAGA
..........(.(.....................(..(...........)).....................).)..........
>AANU01181654.1/1265-1351
UCUCAUGAUGUGACUCUCUAGAGGAAAGCGCUUACUGUUGGCUAAAAAAAUAGGAAGCGCUUCUCUUUAGAGUGUUACGCUUUGAGA
..........(.(.....................(..(...........)..).....................).)..........
>AANU01181652.1/1375-1461
UAUCGGGCUGUGACCCUCUAAAGGGAAGCGCUUUCUGUUGUGUGAAAGAAAACGAAGCGCUUCUCUUUGGAGCGUUACAGUUUGAGA
..........(.(.....................(..(............)..)....................).)..........
>AADC01140615.1/1296-1380
UCUCAAGCUGUGACUGCAAAGGGAAGCCCUUUCUGUUGUCUAAAAGAAAAGAAAGUGCUUCCCUUUGGUGAAUUACGGUUUGAGA
..........(.(...................(..(............).).....................).)..........
>AADD01166740.1/3349-3438
UCUCAGGUUGUGACCUUCUCGAGGAAAGAAGCACUUUCUGUUGUCUGAAAGAAAAGAAAGUGCUUCCUUUCAGAGGGUUACGGUUUGAGA
..........(.(........................(..(............).).....................).)..........
>AADC01140684.1/18074-18158
UCUCAUGAUGUGACCAUCUGGAGGUAAGAAGCACUUUGUGUUUUGUGAAAGAAAGUGCUUCCUUUCAGAGGGUUACUCUUUGAGA
..........(.(......................(..(............))...................).)..........
>ABBA01184320.1/134-221
UCCCAUGCUGUGACCCUCCAAAGGGAAGCGCUUUCUGUUUGUUUUCUCUUAAACAAAGUGCCUCCCUUUAGAGUGUUACCGUUUGGGA
..........(.(.....................(..(............)..).....................).)..........
>AADD01166735.1/7661-7745
UCUCAGGCAGUGACCCUCUAGAUGGAAGCACUGUCUGUUGUCUAAGAAAAGAUCGUGCAUCCUUUUAGAGUGUUACUGUUUGAGA
..........(.(.....................(..(...........)).....................).)..........
>ABBA01068200.1/49909-49819
UCUCAGGCUGUGGCCAUCUAGAGGUAAGAAGCACUUUCUGUUGUCUUAAAGAAAAGAAAGUCCUUUUUUUUUUUUUUUUUUUUUUUUGAGA
...........(.(.......................(..(............).).....................).)...........
>AADA01301557.1/9525-9439
UGUCAGGCUGUGUCCCUCUACAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAGUGCUUCCUUUUAGAGGGUUGCUGUUUAAGA
..........(.(.....................(..(............).).....................).)..........
>AC011453.4/70442-70356
UCCCAUGCUGUGACCCUCUAGAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAGUGCAUCCUUUUAGAGGUUUACUGUUUGAGG
..........(.(.....................(..(............).).....................).)..........
3 Y(UG(U))
(G()U)
U(G(U))
 25 62.5
>AANU01181661.1/14497-14582
UCCCAGGCUGUGACUCUACAAAGGAAAGCACUUUCUGUUGUCGAAAGAAAAGAAAGCGCUUCCCUUUUGAGAAUUACGGUUUGAGA
..........(.(.....................(..((.(......).))).....................).)..........
>AADC01140615.1/1296-1380
UCUCAAGCUGUGACUGCAAAGGGAAGCCCUUUCUGUUGUCUAAAAGAAAAGAAAGUGCUUCCCUUUGGUGAAUUACGGUUUGAGA
..........(.(...................(..((.(.......))).).....................).)..........
>AC200331.2/109718-109632
UCUUAUGCUGUGACCCUCCAAAGGGAAGAACUUUCUGUUGUCUAAAAGAAAAGAACGCACUUCCCUUUAGAGUGUUACCGUGUGAGA
..........(.(.....................(..((.(.......))).).....................).)..........
>AANU01181649.1/13118-13204
UCUCAUGCUGUGACUCUCUGGACAGAAGCGGUUUCUGUUGUCUGAAAGAAAACAAAUCGCUUCUGUCUAGAGUGUUUCGGUUUGAGA
..........(.(.....................(..((.(.......))).).....................).)..........
>AACZ03117218.1/20332-20246
UCUCAGGCUGUGACCCUCCAGAGGGAAGUACUUUCUGUUGUCUGAGAGAAAAGAAAGUGCUUCCCUUUGGACUGUUGCGGUUUGAGU
..........(.(.....................(..((.(.......))).).....................).)..........
>AADD01166740.1/446-532
UCUCAAGCUGUGAGUCUACAAAGGAAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAUCGCUUCCCUUUGGAGUGUUACGGUUUGAGA
..........(.(.....................(..((.(.......))).).....................).)..........
>AANU01181659.1/2591-2677
UUUCAGGCUGUGACCCUCUUGAGGGAAGCACUUUCUGUUGUCUGAAUAAAAAGAAAGUGCUUCCUUUUAGAGGCUUACGGUCUGAGA
..........(.(.....................(..((.(.......))).).....................).)..........
>AANU01181659.1/6633-6719
UCUCAGGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGGAAGAAAAGAAUGCGCUUCCCUUUAGAGGGUUACUCUCUGAGA
..........(.(.....................(..((.(.......))).).....................).)..........
>AANU01181649.1/2975-3064
UCUCAGGCUGUGACUAUCUGGAGGUAAGAAGUGCUUACUGUUGUCUUAAAGAAAAGAAAGUGCUUUCUUUCCGAGGGUUACGGUUUGAGA
..........(.(........................(..((.(.......))).).....................).)..........
>AANU01181658.1/2015-2101
UUUCAUGCUGUGACUCUCUGGAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAACAAAGCGCUUCUCUUUAGAGAGUUACGGUUUGAGA
..........(.(.....................(..((.(.......))).).....................).)..........
>AADD01166740.1/3349-3438
UCUCAGGUUGUGACCUUCUCGAGGAAAGAAGCACUUUCUGUUGUCUGAAAGAAAAGAAAGUGCUUCCUUUCAGAGGGUUACGGUUUGAGA
..........(.(........................(..((.(.......))).).....................).)..........
>AADA01301557.1/9525-9439
UGUCAGGCUGUGUCCCUCUACAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAGUGCUUCCUUUUAGAGGGUUGCUGUUUAAGA
..........(.(.....................(..((.(.......))).).....................).)..........
>AC011453.4/89941-89855
UCUCCUGCUGUGACCCUCAAGAUGGAAGCAGUUUCUGUUGUCUGAAAGGAAAGAAAGUGCUUCCUUUUUGAGGGUUACUGUUUGAGA
..........(.(.....................(..((.(.......))).).....................).)..........
>AANU01181649.1/9934-10020
UUUCAUGCUGUGACCCUACAAAGGGAAGCCCUUUCUGUUGUCUAAACUAAAAGAAAGUGCUUCUCUUUGCUGGGUUACGGUUUGAGA
..........(.(.....................(..((.(.......)).)).....................).)..........
>AANU01181652.1/1375-1461
UAUCGGGCUGUGACCCUCUAAAGGGAAGCGCUUUCUGUUGUGUGAAAGAAAACGAAGCGCUUCUCUUUGGAGCGUUACAGUUUGAGA
..........(.(.....................(..((.(.......)))..)....................).)..........
>AC011453.4/70442-70356
UCCCAUGCUGUGACCCUCUAGAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAAGAAAGUGCAUCCUUUUAGAGGUUUACUGUUUGAGG
..........(.(.....................(..((.(.......))).).....................).)..........
>AANU01181661.1/11625-11711
UCUCAGUCUGUGACCCUCUAGAAGGAAGCACUUUCUGUUGUUUGAAAGAAAAGAAAGUGCAUCAUUUUAGAGGAUUACAGUUUGAGA
..........(.(.....................(..((.(.......))).).....................).)..........
>ABBA01068200.1/49909-49819
UCUCAGGCUGUGGCCAUCUAGAGGUAAGAAGCACUUUCUGUUGUCUUAAAGAAAAGAAAGUCCUUUUUUUUUUUUUUUUUUUUUUUUGAGA
...........(.(.......................(..((.(.......))).).....................).)...........
>AADD01166735.1/1220-1306
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
..........(.(.....................(..((.(.......))).).....................).)..........
>AANU01181651.1/3882-3966
CCUCAUGCAGUGACACUCUAAAUGGCAGCACUGUCUGUGGUCUAAAACAAGAUCGUGCAGCCUUUUAGAGUGUUACUGUGUGAGA
..........(.(.................(..(.(.(.......)...).)..).................).)..........
>AADD01166735.1/7661-7745
UCUCAGGCAGUGACCCUCUAGAUGGAAGCACUGUCUGUUGUCUAAGAAAAGAUCGUGCAUCCUUUUAGAGUGUUACUGUUUGAGA
..........(.(.....................(..((.(......)))).....................).)..........
>AANU01156321.1/745-831
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..........(.(.....................(..(............).).....................).)..........
>ABBA01184320.1/134-221
UCCCAUGCUGUGACCCUCCAAAGGGAAGCGCUUUCUGUUUGUUUUCUCUUAAACAAAGUGCCUCCCUUUAGAGUGUUACCGUUUGGGA
..................................(..(............)..)..................................
..........(.(.....................(..(............)..).....................).)..........
>AC200331.2/128607-128521
UCUCAUGAUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGGCUAAAAGAAAAGAAAGCGCUUCCCUUCAGAGUGUUACGCUUUGAGA
..................................(..(............).)..................................
..........(.(.....................(..(............).).....................).)..........
>AANU01181661.1/7385-7471
UCUCAUGCAGUCAUUCUCCAAUGGGAAGCACCUUCUGUGGUCUGAAAGCAAGCAGAGGGCCUCCUUUUGGAGCAUUACUGUUUGAGA
..................................(..(............))...................................
>AANU01181659.1/3404-3490
UCUCAGGCUCUAACCCUCUAGAGGGAAGCGCUUUCUGUCGUCUGAGAGAGAAGAAAGUGCAUCCUUUUAGAGGAUUACGGUUUGAGA
..................................(..(............).)..................................
>AC011453.4/54650-54564
UCUCAUGCUGUGACCCUACAAAGGGAAGCACUUUCUCUUGUCCAAAGGAAAAGAAGGCGCUUCCCUUUGGAGUGUUACGGUUUGAGA
.....................................(..(.......)).....................................
>AANU01181659.1/14614-14698
UCUCAGGCUGUGACUCUCCAAAGGGAAGAAUUUUCUGUUGCCUGAAAGAAAACGCACUUCCCUUUCGAGUGUUACCGUUUUGAGA
..................................(..(........)).....................................
>EU086470.1/45033-45119
UCUCAUGCAGUCAUUCUCCAAAAGGGAGCACUUUCUGUUGUCUGAAAGAAAACAAAGUGCCUCCUUUUAGAGUGUUACUGUUUGAGA
..................................(..(............).)..................................
>AANU01181659.1/8603-8689
UCUCAGGCUGUGACCCUCUAGAGGGAAGCACUUUAUCUUGUGUGAAAGGAAAGAAAGCGCUUCCCUUCAGAGGAUUACUCUUUGAGA
.....................................(..(.........))...................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 Y(UG(U)) < 0.001 24.3
AADD01166735.1/1220-1306
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
.........1.........2.........3.........4.........5.........6.........7.........8.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
2 U(G(U)) < 0.001 13
AADD01166735.1/1220-1306
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
.........1.........2.........3.........4.........5.........6.........7.........8.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
3 (G()U) < 0.001 6.59
AADD01166735.1/1220-1306
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
.........1.........2.........3.........4.........5.........6.........7.........8.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
4 (.YRRR.) < 0.001 4.88
AADD01166735.1/1220-1306
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
.........1.........2.........3.........4.........5.........6.........7.........8.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
5 G(G(A)) < 0.001 1.38
AADD01166735.1/1220-1306
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
.........1.........2.........3.........4.........5.........6.........7.........8.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 Y(UG(U)) < 0.001 24.3
AADD01166735.1/1220-1306
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
UCCCAUGCUGUGACCCUCUAGAGGGAAGCACUUUCUGUUGUCUGAAAGAAACCAAAGCGCUUCCCUUUGGAGCGUUACGGUUUGAGA
.........1.........2.........3.........4.........5.........6.........7.........8.......
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
2 (.AYN.) (URB) < 0.001 0.00308
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).