D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Highly accelerated region 1A/1B   (Rfam: RF00635)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
((A)AR)U
A(UC(A))
C(AA(Y))
(GNAA)
U(A(C))
A(G(R))
(A()A)
((G)Y)U
((U)C)A
100.0
100.0
100.0
100.0
100.0
81.8
81.8
90.9
100.0
100.0
100.0
100.0
81.8
100.0
(()(U)Y(N)())
U(NR)R
(NYANC)
(NYANC)
(UARA)
((U)G)U
((A)AR)U
A(UC(A))
(GNAA)
A(G(R))
(A()A)
((G)Y)U

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.9 %
(± 0.0762 %)
Decision tree:

5-fold cross-validation: 91.9 %
(± 12.7 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 95.1 %
(± 6.26 %)
of AAEX03014138.1/15195-15312
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
((.((.((((((.(((((.((((..(.....))))).))))(.((((((..)))))).).(.((((....)))).)((((..((.((....)).)))))..).).))))))..))).)
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678

abstract shape: (()()()())

Number of sequences
Structure ORBs (out of 11) (%)
1 (()(U)Y(N)())
 10 90.9
>AADN03007856.1/620557-620674
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUAGAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
>AAPE02054680.1/1732-1616
CGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAUCCGUGGAAACAGUUACGAUCAAAAUUAAAGUGUUUAGAGAUUUUCCUCAAUUUUA
.............((.........................)(................).(..............)(........................).).............
>AC152889.1/75335-75452
UGAAAUGGAGGAUAAAUUACAGCAAUUUAUCAAAUGAAAUUAUAGGUGUAGACACAUGUCAGCAAUGGAAACAAUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
>DQ860410.1/178-61
UGAAACGGAGGAGACGUUACAGCAACGUGUCAGCUGAAAUGAUGGGCGUAGACGCACGUCAGCGGCGGAAAUGGUUUCUAUCAAAAUGAAAGUGUUUAGAGAUUUUCCUCAAGUUUCA
.............((.........................)(................).(..............)(........................).)..............
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
>ABRN01373532.1/4693-4810
CGAAAAGGAGGGGAAAUUACAGCAAUUCAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGGAACACUUUCUAUCAAAAUUAAAGUACUUAGCGAUUUUCCUUAAAUUUCA
.............((.........................)(................).(..............)(........................)..).............
2 (()(U)Y(N)())
U(NR)R
 10 90.9
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(......(..)......).(..............)(........................).)..............
>AADN03007856.1/620557-620674
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUAGAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(......(..)......).(..............)(........................).)..............
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
.............((.........................)(......(..)......).(..............)(........................).)..............
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(......(..)......).(..............)(........................).)..............
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(......(..)......).(..............)(........................).)..............
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(......(..)......).(..............)(........................).)..............
>ABRN01373532.1/4693-4810
CGAAAAGGAGGGGAAAUUACAGCAAUUCAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGGAACACUUUCUAUCAAAAUUAAAGUACUUAGCGAUUUUCCUUAAAUUUCA
.............((.........................)(......(..)......).(..............)(........................)..).............
>AAPE02054680.1/1732-1616
CGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAUCCGUGGAAACAGUUACGAUCAAAAUUAAAGUGUUUAGAGAUUUUCCUCAAUUUUA
.............((.........................)(......(..)......).(..............)(........................).).............
>AC152889.1/75335-75452
UGAAAUGGAGGAUAAAUUACAGCAAUUUAUCAAAUGAAAUUAUAGGUGUAGACACAUGUCAGCAAUGGAAACAAUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(......(..)......).(..............)(........................).)..............
>DQ860410.1/178-61
UGAAACGGAGGAGACGUUACAGCAACGUGUCAGCUGAAAUGAUGGGCGUAGACGCACGUCAGCGGCGGAAAUGGUUUCUAUCAAAAUGAAAGUGUUUAGAGAUUUUCCUCAAGUUUCA
.............((.........................)(......(..)......).(..............)(........................).)..............
3 (()(U)Y(N)())
U(NR)R
(NYANC)
 9 81.8
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
>AADN03007856.1/620557-620674
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUAGAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
>AC152889.1/75335-75452
UGAAAUGGAGGAUAAAUUACAGCAAUUUAUCAAAUGAAAUUAUAGGUGUAGACACAUGUCAGCAAUGGAAACAAUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
>AAPE02054680.1/1732-1616
CGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAUCCGUGGAAACAGUUACGAUCAAAAUUAAAGUGUUUAGAGAUUUUCCUCAAUUUUA
.............((..........(.....)........)(......(..)......).(..............)(........................).).............
>ABRN01373532.1/4693-4810
CGAAAAGGAGGGGAAAUUACAGCAAUUCAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGGAACACUUUCUAUCAAAAUUAAAGUACUUAGCGAUUUUCCUUAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(........................)..).............
4 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
 8 72.7
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
>AADN03007856.1/620557-620674
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUAGAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
>AC152889.1/75335-75452
UGAAAUGGAGGAUAAAUUACAGCAAUUUAUCAAAUGAAAUUAUAGGUGUAGACACAUGUCAGCAAUGGAAACAAUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
>AAPE02054680.1/1732-1616
CGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAUCCGUGGAAACAGUUACGAUCAAAAUUAAAGUGUUUAGAGAUUUUCCUCAAUUUUA
.............((..........(.....)........)(......(..)......).(..............)(.........(....)..........)).............
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
5 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
 7 63.6
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
>AC152889.1/75335-75452
UGAAAUGGAGGAUAAAUUACAGCAAUUUAUCAAAUGAAAUUAUAGGUGUAGACACAUGUCAGCAAUGGAAACAAUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
>AADN03007856.1/620557-620674
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUAGAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
6 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
((A)AR)U
 7 63.6
>AC152889.1/75335-75452
UGAAAUGGAGGAUAAAUUACAGCAAUUUAUCAAAUGAAAUUAUAGGUGUAGACACAUGUCAGCAAUGGAAACAAUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
>AADN03007856.1/620557-620674
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUAGAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
7 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
((A)AR)U
A(UC(A))
 7 63.6
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>AC152889.1/75335-75452
UGAAAUGGAGGAUAAAUUACAGCAAUUUAUCAAAUGAAAUUAUAGGUGUAGACACAUGUCAGCAAUGGAAACAAUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>AADN03007856.1/620557-620674
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUAGAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
8 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
((A)AR)U
A(UC(A))
C(AA(Y))
 7 63.6
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>AC152889.1/75335-75452
UGAAAUGGAGGAUAAAUUACAGCAAUUUAUCAAAUGAAAUUAUAGGUGUAGACACAUGUCAGCAAUGGAAACAAUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>AADN03007856.1/620557-620674
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUAGAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
9 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
((A)AR)U
A(UC(A))
C(AA(Y))
(GNAA)
 5 45.5
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
....(.(......((.......(..(.....)).......)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
10 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
((A)AR)U
A(UC(A))
C(AA(Y))
(GNAA)
U(A(C))
 5 45.5
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
....(.(......((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(......((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
11 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
((A)AR)U
A(UC(A))
C(AA(Y))
(GNAA)
U(A(C))
A(G(R))
 5 45.5
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).).)....)..)....
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).).)....)..)....
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).).)....)..)....
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).).)....)..)....
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).).)....)..)....
12 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
((A)AR)U
A(UC(A))
C(AA(Y))
(GNAA)
U(A(C))
A(G(R))
(A()A)
 5 45.5
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..((.((....)).)))....).).)....)..)....
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..((.((....)).)))....).).)....)..)....
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..((.((....)).)))....).).)....)..)....
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..((.((....)).)))....).).)....)..)....
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..((.((....)).)))....).).)....)..)....
13 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
((A)AR)U
A(UC(A))
C(AA(Y))
(GNAA)
U(A(C))
A(G(R))
(A()A)
((G)Y)U
 5 45.5
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..)....
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..)....
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..)....
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..)....
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..)....
14 (()(U)Y(N)())
U(NR)R
(NYANC)
(UARA)
((U)G)U
((A)AR)U
A(UC(A))
C(AA(Y))
(GNAA)
U(A(C))
A(G(R))
(A()A)
((G)Y)U
((U)C)A
 4 36.4
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
((..(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..).).)
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
((..(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..).).)
>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
((..(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..).).)
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
((..(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..).).)

>AANU01093131.1/419-536
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
.............((.........................)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
....(.(......((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).).)....)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..((.((....)).)))....).).)....)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..)....
((..(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..).).)
>AAFC03066796.1/8405-8522
CGAAAUGGAGGAGAAAUUACAGCAAUUCAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAACCGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUUAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
.............((.........................)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
....(.(......((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).).)....)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..((.((....)).)))....).).)....)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..)....
((..(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..).).)
>AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
.............((.........................)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
....(.(......((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).).)....)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..((.((....)).)))....).).)....)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..)....
((..(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..).).)
>DQ860412.1/770-887
UAAAAUGGAGGAGAAAUUACAGCAAUUUAUCAGCUGAAAUUAUAGGUGUAGACACAUGUCAGCCGUGGAAAUGGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
.............((.........................)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
....(.(......((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).).)....)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..((.((....)).)))....).).)....)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..)....
((..(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..).).)
>ABGA01067565.1/270-387
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGAAAUAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
.............((.........................)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
....(.(......((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).)......)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..(...(....)...))....).).)....)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(....(....)....)(..(..((.((....)).)))....).).)....)..)....
....(.(....(.((..(.(..(..(.....))..).)..)(.(....(..)....).).(.(..(....)..).)(..(..((.((....)).)))....).).)....)..)....
>AADN03007856.1/620557-620674
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUAGAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
.............((.........................)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>AC152889.1/75335-75452
UGAAAUGGAGGAUAAAUUACAGCAAUUUAUCAAAUGAAAUUAUAGGUGUAGACACAUGUCAGCAAUGGAAACAAUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
.............((.........................)(................).(..............)(........................).)..............
.............((.........................)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(........................).)..............
.............((..........(.....)........)(......(..)......).(..............)(.........(....).........).)..............
.............((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)..............
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(.........(....).........).)......)..)....
....(.(......((..........(.....)........)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
....(.(......((.......(..(.....)).......)(.(....(..)....).).(..............)(..(..(...(....)...))....).)......)..)....
>AAPE02054680.1/1732-1616
CGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAUCCGUGGAAACAGUUACGAUCAAAAUUAAAGUGUUUAGAGAUUUUCCUCAAUUUUA
.............((.........................)(................).(..............)(........................).).............
.............((.........................)(......(..)......).(..............)(........................).).............
.............((..........(.....)........)(......(..)......).(..............)(........................).).............
.............((..........(.....)........)(......(..)......).(..............)(.........(....)..........)).............
>ABRN01373532.1/4693-4810
CGAAAAGGAGGGGAAAUUACAGCAAUUCAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCAGUGGGAACACUUUCUAUCAAAAUUAAAGUACUUAGCGAUUUUCCUUAAAUUUCA
.............((.........................)(................).(..............)(........................)..).............
.............((.........................)(......(..)......).(..............)(........................)..).............
.............((..........(.....)........)(......(..)......).(..............)(........................)..).............
>DQ860410.1/178-61
UGAAACGGAGGAGACGUUACAGCAACGUGUCAGCUGAAAUGAUGGGCGUAGACGCACGUCAGCGGCGGAAAUGGUUUCUAUCAAAAUGAAAGUGUUUAGAGAUUUUCCUCAAGUUUCA
.............((.........................)(................).(..............)(........................).)..............
.............((.........................)(......(..)......).(..............)(........................).)..............

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 U(NR)R < 0.001 5.75
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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2 (NYANC) < 0.001 10.9
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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3 (UARA) < 0.001 29.1
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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4 ((A)AR)U < 0.001 4.26
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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5 A(UC(A)) < 0.001 17.3
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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6 (()(U)Y(N)()) < 0.001 260
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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7 ((U)C)A < 0.001 6.45
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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8 (GNAA) < 0.001 2.31
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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9 ((U)G)U < 0.001 1.42
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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10 U(A(C)) < 0.001 1.11
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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11 C(AA(Y)) < 0.001 2.21
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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12 A(G(R)) < 0.001 2.12
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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13 (A()A) 0.00174 1.79
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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14 ((G)Y)U 0.00519 1.01
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 U(NR)R < 0.001 5.75
AAEX03014138.1/15195-15312
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
UGAAAUGGAGGAGAAAUUACAGCAAUUUAUCAACUGAAAUUAUAGGUGUAGACACAUGUCAGCGGUGCAAACAGUUUCUAUCAAAAUUAAAGUAUUUAGAGAUUUUCCUCAAAUUUCA
...................................................................................................1..................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1........
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NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).