D-ORB
The Overrepresented RNA Blocks
Rfam-derived
Transfer RNA
tRNA
tRNA-Sec
mt-tmRNA
Small RNA
drum
EFASI
GA-cis
LOOT
nadA
RAGATH-18
skipping-rope
SpF59 sRNA
Small nuclear RNA
U1
U2
U4
U5
U6
U12
ScaRNA
SCARNA1
SCARNA4
SCARNA11
SCARNA16
SCARNA21
Ribozyme
Hammerhead 1
Hammerhead II
Hammerhead 3
Hammerhead HH9
Hammerhead HH10
Riboswitch
AdoCbl-variant
Cobalamin
c-di-GMP-II
DUF1646
Fluoride
FMN
glnA
Glycine
Lysine
MOCO RNA motif
nhaA-I
NiCo
PreQ1
PreQ1-III
Purine
raiA
SAH
SAM-SAH
SAM
SAM-I-IV-variant
SAM-IV
SAM alpha
SMK box
sul1
THF
TPP
ydaO-yuaA
ykkC-yxkD
ykoK
yybP-ykoY
ZMP-ZTP
Ribosomal RNA
5S rRNA
5.8S rRNA
MicroRNA
let-7
lin-4
mir-TAR
mir-1
mir-7
mir-9 - mir-79
mir-10
mir-15
mir-16
mir-17
mir-19
mir-21
mir-27
mir-30
mir-33
mir-96
mir-124
mir-128
mir-133
mir-135
mir-146
mir-147
mir-154
mir-184
mir-188
mir-192 - mir-215
mir-199
mir-204
mir-216
mir-221
mir-302
mir-320
mir-340
mir-449
mir-515
mir-720
Long non-coding RNA
H19 1
HAR1A
HOTAIR 1
HOTAIR 2
HOTAIR 3
HOTAIRM1 1
HOTAIRM1 3
HOTAIRM1 4
HOTAIRM1 5
Sphinx 2
XIST A REPEAT
IRES
IRES HCV
IRES Pesti
IRES Picorna
Intron
Intron gpII
group-II-D1D4-1
group-II-D1D4-2
group-II-D1D4-3
group-II-D1D4-4
group-II-D1D4-5
group-II-D1D4-6
group-II-D1D4-7
H/ACA box snoRNA
SNORA17
SNORA26
SNORA27
SNORA43
SNORA73
C/D box snoRNA
U3
Plant U3
CRISPR
CRISPR-DR2
CRISPR-DR3
CRISPR-DR4
Coronavirus
bCoV-3UTR
gCoV-3UTR
Sarbecovirus-3UTR
Corona sm2
Corona pk3
Corona FSE
Cis-regulatory element
algC
Downstream-peptide
DUF805
DUF805b
IRE I
IRE II
L10 leader
pemK
PhotoRC-II
RRE
yjdF
Antisense RNA
ASpks
C4
IsrR
Tools:
Create
Query
Mutate
Draw
NCM grammar
Citing D-ORB
M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)
Generate variant sequences of an input sequence
Mutation generator
Wildtype sequence
*
Number of mutations
Consecutive mutated nucleotides only
Include fewer mutations
Include wildtype sequence
Compute the number of mutants
Generate the mutants
