D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

HOX antisense intergenic RNA myeloid 1 conserved region 5   (Rfam: RF01979)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(UCC())
U(NY(U))
Y(NYY)A
((Y)U(U))
U(YN)A
C(YUR)R
((A)NU)U
Y(C(A)()())
90.0
90.0
90.0
80.0
90.0
50.0
80.0
80.0
(UCC())
Y(NYY)A
U(YN)A
C(YUR)R
((A)NU)U

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.9 %
(± 0.0299 %)
Decision tree:

5-fold cross-validation: 94.8 %
(± 9.99 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 94.8 %
(± 9.97 %)
of AAWR02014100.1/94686-94829
AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
(...((((((((((((((((((((...)))))).((((.(((((..)))))((((((...))))))....(((((((((((((..(((((.((((...)..))))))))))))).))))))))))))..)))))))))))))))
...................................................................................................1............................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234

abstract shape: (()(()()()))

Number of sequences
Structure ORBs (out of 10) (%)
1 (UCC())
 9 90.0
>ABRR01276309.1/113-258
UUCCUGGAGUUGGGGGUUUCUGUAGGCACUUUGUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAGCUCUGAGGCUGCCCAAUCAUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACAUUGAAAAACCAAAUCCAU
(...(...........................................................................................................................................))
>ABRT010305838.1/698-842
AUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUAUUUCUCCAUUUUCAAAUGCUUGGGCUUGGCCCAAAUCUUAGGCUGCCCAAUCCUGUUUUUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUACACUGAAAACCAAAUCCAU
(...(..........................................................................................................................................))
>AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
(...(.........................................................................................................................................))
>AC186206.6/149801-149946
UUCCUGGAGUUGGGGGUUUCUGUAGGCACUUUAUUUCGCCACUUUCAAAAGCUUGGGCUUGGCUCAGCUCUGGGGCUGCCCAAUUCUGUUUCUAUCACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(...........................................................................................................................................))
>AAQQ01071857.1/681-823
UUCCUAGAGCUGGGGUUUCAGUAGGCACUUUAUUUCUCCACCUUCAAAAGCUUGAGCUUGCCCAACUCUUAGGCUGCCCAAUCCUGUUUCUAUUACUAAUUUAAAUUUAUGGCUUGAGCCACUACACUGAAAGCCAAAUCCAU
(...(........................................................................................................................................))
>AAQR03057532.1/15102-15250
UUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUUAUUUCUUUAUUUUCAAGAGGAGGUUGGGCCUGGCUCAAAUCUUAGGCUGCCCAAUCUUGUUUCUAUUACCAAUUUUAAUCUAUGGCUUGAUCCUGUACACUGAAAACCAAAUUCAU
(...(..............................................................................................................................................))
>AAFC03094354.1/101361-101503
UUCCUGGAGUUGGAGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUCAGGCUGCCCAAUCCUGUUUCUAUUGCCAAUUUAAAUCUAUGGCUUGAACCUCUACGUUGAAAACCUAAUCCAU
(...(........................................................................................................................................))
>AANG01383093.1/9893-10040
UUCCUGGAGUUGGGCGGUUUCUGAAGGCACUUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUGUGAGGCUGCCCAAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(.............................................................................................................................................))
>AC004079.1/82362-82506
UUCCUGGAGUUGGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAGAGCUUGGGCUUGGCCCAAAUCUUAGACUGUCCAAUUCUGCCUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUGCACUGAAAAUCAAAUCCUU
(...(..........................................................................................................................................))
2 (UCC())
U(NY(U))
 7 70.0
>ABRT010305838.1/698-842
AUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUAUUUCUCCAUUUUCAAAUGCUUGGGCUUGGCCCAAAUCUUAGGCUGCCCAAUCCUGUUUUUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUACACUGAAAACCAAAUCCAU
(...(..............................................................................(..(......................))................................))
>AC186206.6/149801-149946
UUCCUGGAGUUGGGGGUUUCUGUAGGCACUUUAUUUCGCCACUUUCAAAAGCUUGGGCUUGGCUCAGCUCUGGGGCUGCCCAAUUCUGUUUCUAUCACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(..............................................................................(..(.....................).).................................))
>AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
(...(.............................................................................(..(......................))................................))
>AANG01383093.1/9893-10040
UUCCUGGAGUUGGGCGGUUUCUGAAGGCACUUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUGUGAGGCUGCCCAAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(................................................................................(..(......................)).................................))
>AAFC03094354.1/101361-101503
UUCCUGGAGUUGGAGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUCAGGCUGCCCAAUCCUGUUUCUAUUGCCAAUUUAAAUCUAUGGCUUGAACCUCUACGUUGAAAACCUAAUCCAU
(...(............................................................................(..(......................))................................))
>AAQQ01071857.1/681-823
UUCCUAGAGCUGGGGUUUCAGUAGGCACUUUAUUUCUCCACCUUCAAAAGCUUGAGCUUGCCCAACUCUUAGGCUGCCCAAUCCUGUUUCUAUUACUAAUUUAAAUUUAUGGCUUGAGCCACUACACUGAAAGCCAAAUCCAU
(...(............................................................................(..(.....................).)................................))
>AAQR03057532.1/15102-15250
UUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUUAUUUCUUUAUUUUCAAGAGGAGGUUGGGCCUGGCUCAAAUCUUAGGCUGCCCAAUCUUGUUUCUAUUACCAAUUUUAAUCUAUGGCUUGAUCCUGUACACUGAAAACCAAAUUCAU
(...(..................................................................................(..(............))..........................................))
3 (UCC())
U(NY(U))
Y(NYY)A
 6 60.0
>AANG01383093.1/9893-10040
UUCCUGGAGUUGGGCGGUUUCUGAAGGCACUUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUGUGAGGCUGCCCAAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(................................................................................(..(........(...).........)).................................))
>AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
(...(.............................................................................(..(........(...).........))................................))
>ABRT010305838.1/698-842
AUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUAUUUCUCCAUUUUCAAAUGCUUGGGCUUGGCCCAAAUCUUAGGCUGCCCAAUCCUGUUUUUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUACACUGAAAACCAAAUCCAU
(...(..............................................................................(..(........(...).........))................................))
>AAQQ01071857.1/681-823
UUCCUAGAGCUGGGGUUUCAGUAGGCACUUUAUUUCUCCACCUUCAAAAGCUUGAGCUUGCCCAACUCUUAGGCUGCCCAAUCCUGUUUCUAUUACUAAUUUAAAUUUAUGGCUUGAGCCACUACACUGAAAGCCAAAUCCAU
(...(............................................................................(..(........(...)........).)................................))
>AC186206.6/149801-149946
UUCCUGGAGUUGGGGGUUUCUGUAGGCACUUUAUUUCGCCACUUUCAAAAGCUUGGGCUUGGCUCAGCUCUGGGGCUGCCCAAUUCUGUUUCUAUCACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(..............................................................................(..(........(...)........).).................................))
>AAFC03094354.1/101361-101503
UUCCUGGAGUUGGAGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUCAGGCUGCCCAAUCCUGUUUCUAUUGCCAAUUUAAAUCUAUGGCUUGAACCUCUACGUUGAAAACCUAAUCCAU
(...(............................................................................(..(........(...).........))................................))
4 (UCC())
U(NY(U))
Y(NYY)A
((Y)U(U))
 6 60.0
>AAFC03094354.1/101361-101503
UUCCUGGAGUUGGAGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUCAGGCUGCCCAAUCCUGUUUCUAUUGCCAAUUUAAAUCUAUGGCUUGAACCUCUACGUUGAAAACCUAAUCCAU
(...(.......(.(..............).(.................................................(..(........(...).........)).......................)).......))
>AAQQ01071857.1/681-823
UUCCUAGAGCUGGGGUUUCAGUAGGCACUUUAUUUCUCCACCUUCAAAAGCUUGAGCUUGCCCAACUCUUAGGCUGCCCAAUCCUGUUUCUAUUACUAAUUUAAAUUUAUGGCUUGAGCCACUACACUGAAAGCCAAAUCCAU
(...(................((.....).(..................................................(..(........(...)........).)..............).)...............))
>AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
(...(.............((............).(...............................................(..(........(...).........))................).).............))
>AC186206.6/149801-149946
UUCCUGGAGUUGGGGGUUUCUGUAGGCACUUUAUUUCGCCACUUUCAAAAGCUUGGGCUUGGCUCAGCUCUGGGGCUGCCCAAUUCUGUUUCUAUCACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(..................((....).(...................................................(..(........(...)........).)..............)).................))
>AANG01383093.1/9893-10040
UUCCUGGAGUUGGGCGGUUUCUGAAGGCACUUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUGUGAGGCUGCCCAAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(........(.(..............).(....................................................(..(........(...).........)).......................))........))
>ABRT010305838.1/698-842
AUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUAUUUCUCCAUUUUCAAAUGCUUGGGCUUGGCCCAAAUCUUAGGCUGCCCAAUCCUGUUUUUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUACACUGAAAACCAAAUCCAU
(...(..............((............).(...............................................(..(........(...).........))................)..)............))
5 (UCC())
U(NY(U))
Y(NYY)A
((Y)U(U))
U(YN)A
 5 50.0
>AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
(...(.............((............).(........(..)...................................(..(........(...).........))................).).............))
>AAFC03094354.1/101361-101503
UUCCUGGAGUUGGAGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUCAGGCUGCCCAAUCCUGUUUCUAUUGCCAAUUUAAAUCUAUGGCUUGAACCUCUACGUUGAAAACCUAAUCCAU
(...(.......(.(..............).(...........(..)..................................(..(........(...).........)).......................)).......))
>ABRT010305838.1/698-842
AUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUAUUUCUCCAUUUUCAAAUGCUUGGGCUUGGCCCAAAUCUUAGGCUGCCCAAUCCUGUUUUUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUACACUGAAAACCAAAUCCAU
(...(..............((............).(........(..)...................................(..(........(...).........))................)..)............))
>AANG01383093.1/9893-10040
UUCCUGGAGUUGGGCGGUUUCUGAAGGCACUUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUGUGAGGCUGCCCAAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(........(.(..............).(.............(..)...................................(..(........(...).........)).......................))........))
>AC186206.6/149801-149946
UUCCUGGAGUUGGGGGUUUCUGUAGGCACUUUAUUUCGCCACUUUCAAAAGCUUGGGCUUGGCUCAGCUCUGGGGCUGCCCAAUUCUGUUUCUAUCACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(..................((....).(............(..)...................................(..(........(...)........).)..............)).................))
6 (UCC())
U(NY(U))
Y(NYY)A
((Y)U(U))
U(YN)A
C(YUR)R
 4 40.0
>AAFC03094354.1/101361-101503
UUCCUGGAGUUGGAGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUCAGGCUGCCCAAUCCUGUUUCUAUUGCCAAUUUAAAUCUAUGGCUUGAACCUCUACGUUGAAAACCUAAUCCAU
(...(.......(.(..............).(...........(..)..........(...)...................(..(........(...).........)).......................)).......))
>AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
(...(.............((............).(........(..).........(...).....................(..(........(...).........))................).).............))
>ABRT010305838.1/698-842
AUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUAUUUCUCCAUUUUCAAAUGCUUGGGCUUGGCCCAAAUCUUAGGCUGCCCAAUCCUGUUUUUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUACACUGAAAACCAAAUCCAU
(...(..............((............).(........(..).........(...).....................(..(........(...).........))................)..)............))
>AANG01383093.1/9893-10040
UUCCUGGAGUUGGGCGGUUUCUGAAGGCACUUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUGUGAGGCUGCCCAAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(........(.(..............).(.............(..).........(...).....................(..(........(...).........)).......................))........))
7 (UCC())
U(NY(U))
Y(NYY)A
((Y)U(U))
U(YN)A
C(YUR)R
((A)NU)U
 4 40.0
>AAFC03094354.1/101361-101503
UUCCUGGAGUUGGAGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUCAGGCUGCCCAAUCCUGUUUCUAUUGCCAAUUUAAAUCUAUGGCUUGAACCUCUACGUUGAAAACCUAAUCCAU
(...(.......(.(..............).(...........(..)..........(...)...................(..(.......((...)..)......)).......................)).......))
>AANG01383093.1/9893-10040
UUCCUGGAGUUGGGCGGUUUCUGAAGGCACUUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUGUGAGGCUGCCCAAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(........(.(..............).(.............(..).........(...).....................(..(.......((...)..)......)).......................))........))
>ABRT010305838.1/698-842
AUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUAUUUCUCCAUUUUCAAAUGCUUGGGCUUGGCCCAAAUCUUAGGCUGCCCAAUCCUGUUUUUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUACACUGAAAACCAAAUCCAU
(...(..............((............).(........(..).........(...).....................(..(.......((...)..)......))................)..)............))
>AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
(...(.............((............).(........(..).........(...).....................(..(.......((...)..)......))................).).............))
8 (UCC())
U(NY(U))
Y(NYY)A
((Y)U(U))
U(YN)A
C(YUR)R
((A)NU)U
Y(C(A)()())
 4 40.0
>AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
(...(.............((............).(..(.(...(..)...)(....(...)....)....(...........(..(.......((...)..)......))............))..).).............))
>AAFC03094354.1/101361-101503
UUCCUGGAGUUGGAGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUCAGGCUGCCCAAUCCUGUUUCUAUUGCCAAUUUAAAUCUAUGGCUUGAACCUCUACGUUGAAAACCUAAUCCAU
(...(.......(.(..............).(......(.(..(..)....)(....(...)....).(............(..(.......((...)..)......))..............)..).....)).......))
>ABRT010305838.1/698-842
AUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUAUUUCUCCAUUUUCAAAUGCUUGGGCUUGGCCCAAAUCUUAGGCUGCCCAAUCCUGUUUUUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUACACUGAAAACCAAAUCCAU
(...(..............((............).(..(.(...(..).)(......(...).............)(......(..(.......((...)..)......))..........).)...)..)............))
>AANG01383093.1/9893-10040
UUCCUGGAGUUGGGCGGUUUCUGAAGGCACUUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUGUGAGGCUGCCCAAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(........(.(..............).(.......(.(...(..)...)(....(...)....).(..............(..(.......((...)..)......))................)..)...))........))

>ABRT010305838.1/698-842
AUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUAUUUCUCCAUUUUCAAAUGCUUGGGCUUGGCCCAAAUCUUAGGCUGCCCAAUCCUGUUUUUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUACACUGAAAACCAAAUCCAU
(...(..........................................................................................................................................))
(...(..............................................................................(..(......................))................................))
(...(..............................................................................(..(........(...).........))................................))
(...(..............((............).(...............................................(..(........(...).........))................)..)............))
(...(..............((............).(........(..)...................................(..(........(...).........))................)..)............))
(...(..............((............).(........(..).........(...).....................(..(........(...).........))................)..)............))
(...(..............((............).(........(..).........(...).....................(..(.......((...)..)......))................)..)............))
(...(..............((............).(..(.(...(..).)(......(...).............)(......(..(.......((...)..)......))..........).)...)..)............))
>AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
(...(.........................................................................................................................................))
(...(.............................................................................(..(......................))................................))
(...(.............................................................................(..(........(...).........))................................))
(...(.............((............).(...............................................(..(........(...).........))................).).............))
(...(.............((............).(........(..)...................................(..(........(...).........))................).).............))
(...(.............((............).(........(..).........(...).....................(..(........(...).........))................).).............))
(...(.............((............).(........(..).........(...).....................(..(.......((...)..)......))................).).............))
(...(.............((............).(..(.(...(..)...)(....(...)....)....(...........(..(.......((...)..)......))............))..).).............))
>AAFC03094354.1/101361-101503
UUCCUGGAGUUGGAGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUCAGGCUGCCCAAUCCUGUUUCUAUUGCCAAUUUAAAUCUAUGGCUUGAACCUCUACGUUGAAAACCUAAUCCAU
(...(........................................................................................................................................))
(...(............................................................................(..(......................))................................))
(...(............................................................................(..(........(...).........))................................))
(...(.......(.(..............).(.................................................(..(........(...).........)).......................)).......))
(...(.......(.(..............).(...........(..)..................................(..(........(...).........)).......................)).......))
(...(.......(.(..............).(...........(..)..........(...)...................(..(........(...).........)).......................)).......))
(...(.......(.(..............).(...........(..)..........(...)...................(..(.......((...)..)......)).......................)).......))
(...(.......(.(..............).(......(.(..(..)....)(....(...)....).(............(..(.......((...)..)......))..............)..).....)).......))
>AANG01383093.1/9893-10040
UUCCUGGAGUUGGGCGGUUUCUGAAGGCACUUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAACUGUGAGGCUGCCCAAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(.............................................................................................................................................))
(...(................................................................................(..(......................)).................................))
(...(................................................................................(..(........(...).........)).................................))
(...(........(.(..............).(....................................................(..(........(...).........)).......................))........))
(...(........(.(..............).(.............(..)...................................(..(........(...).........)).......................))........))
(...(........(.(..............).(.............(..).........(...).....................(..(........(...).........)).......................))........))
(...(........(.(..............).(.............(..).........(...).....................(..(.......((...)..)......)).......................))........))
(...(........(.(..............).(.......(.(...(..)...)(....(...)....).(..............(..(.......((...)..)......))................)..)...))........))
>AC186206.6/149801-149946
UUCCUGGAGUUGGGGGUUUCUGUAGGCACUUUAUUUCGCCACUUUCAAAAGCUUGGGCUUGGCUCAGCUCUGGGGCUGCCCAAUUCUGUUUCUAUCACCAAUUUAAAUCUAUGGCUUGAACCUCUACACUGAAAAACCAAAUCCAU
(...(...........................................................................................................................................))
(...(..............................................................................(..(.....................).).................................))
(...(..............................................................................(..(........(...)........).).................................))
(...(..................((....).(...................................................(..(........(...)........).)..............)).................))
(...(..................((....).(............(..)...................................(..(........(...)........).)..............)).................))
>AAQQ01071857.1/681-823
UUCCUAGAGCUGGGGUUUCAGUAGGCACUUUAUUUCUCCACCUUCAAAAGCUUGAGCUUGCCCAACUCUUAGGCUGCCCAAUCCUGUUUCUAUUACUAAUUUAAAUUUAUGGCUUGAGCCACUACACUGAAAGCCAAAUCCAU
(...(........................................................................................................................................))
(...(............................................................................(..(.....................).)................................))
(...(............................................................................(..(........(...)........).)................................))
(...(................((.....).(..................................................(..(........(...)........).)..............).)...............))
>AAQR03057532.1/15102-15250
UUCCUGGAGUUGAGGGUUUCUGUAGGCACUUUUAUUUCUUUAUUUUCAAGAGGAGGUUGGGCCUGGCUCAAAUCUUAGGCUGCCCAAUCUUGUUUCUAUUACCAAUUUUAAUCUAUGGCUUGAUCCUGUACACUGAAAACCAAAUUCAU
(...(..............................................................................................................................................))
(...(..................................................................................(..(............))..........................................))
>ABRR01276309.1/113-258
UUCCUGGAGUUGGGGGUUUCUGUAGGCACUUUGUUUCUCCACUUUCAAAAGCUUGGGCUUGGCCCAGCUCUGAGGCUGCCCAAUCAUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUCUACAUUGAAAAACCAAAUCCAU
(...(...........................................................................................................................................))
>AC004079.1/82362-82506
UUCCUGGAGUUGGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAGAGCUUGGGCUUGGCCCAAAUCUUAGACUGUCCAAUUCUGCCUCUAUUACCAAUUUAAAUCUAUGGCUUGAACCUGUGCACUGAAAAUCAAAUCCUU
(...(..........................................................................................................................................))

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (UCC()) < 0.001 151
AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
...................................................................................................1............................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
2 U(NY(U)) < 0.001 8.72
AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
...................................................................................................1............................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4....
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3 Y(NYY)A < 0.001 7.4
AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
...................................................................................................1............................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4....
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4 ((Y)U(U)) < 0.001 7.33
AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
...................................................................................................1............................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
5 C(YUR)R < 0.001 20.9
AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
...................................................................................................1............................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4....
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6 ((A)NU)U < 0.001 2.23
AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
...................................................................................................1............................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4....
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7 U(YN)A < 0.001 4.58
AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
...................................................................................................1............................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4....
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8 Y(C(A)()()) 0.00869 6.89
AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
...................................................................................................1............................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4....
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ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 (UCC()) < 0.001 151
AAWR02014100.1/94686-94829
AUCCUGGAGUUGGGGUUUCUGUAGGCACUUUAUUUCUCCACUUUCAAAAGCUUGGGCUUGACCCAACUCUGAGGCUGCCCCAUCCUGUUUCUAUUACCAAUUUAAAUCUAUGGCUUCAACCUCUACACUAAAAACCAAAUCCAU
...................................................................................................1............................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).