D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

CRISPR RNA direct repeat element (Rfam: RF01316)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

U(AC(A))
(U()UYA)
(.YYNUG.)
N(Y(U))
A(A(U))

100.0
100.0
100.0
100.0
100.0

(U()UYA)
N(Y(U))
A(A(U))

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 99.9 %
(± 0.101 %)

Decision tree:

5-fold cross-validation: 99.8 %
(± 0.0906 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 100 %
(± 0.015 %)

of CP000726.1/2253841-2253870

CP000726.1/2253841-2253870

GUUUAAAUACAUCUCAUGUUAAUGUUCAAU
(.(.((.(..((......)).).))...))
.........1.........2.........3
123456789012345678901234567890

abstract shape: `()`

					Number of sequences
	Structure	ORBs			(out of 20)	(%)
1		U(AC(A))			20	100.0
>CP000673.1/2823144-2823173 AUUUAAAUACAAUCCUUGUUAAGGUUCAAC .......(..(........)..)....... >CP000673.1/3579827-3579856 AUUUAAAUACAAAUCUUGUUAAGUUUCAAC .......(..(........)..)....... >AE015927.1/1596015-1596044 AUUUAAAUACAACUCUUGUUAUUGUUCAAC .......(..(........))......... >CP000728.1/2521987-2521958 AUUUAAAUACAUCUUAUGUUAAUGUUCAAC .......(..(........).)........ >AM412317.1/2310339-2310368 GCUUAAAUACAUCUCAUGUUAAUGUUCAAC .......(..(........).)........ >ABDO02000004.1/251279-251308 AUUUAAAUACAUCUCAUGUCAAUGUUUAAC .......(..(........)...)...... >CP000728.1/2376467-2376496 AUUUAAAUACAUCCUAUGUUAAUGUUCAAC .......(..(........).)........ >CP000382.1/1866234-1866263 AUUUAAAUACAUCCCAUGUUAUUGUUCAAC .......(..(........))......... >ABDP01000013.1/120655-120684 UCUUAAAUACAUCCUAUGUUAAGGUUCAAC .......(..(........)..)....... >AE015927.1/1590005-1590034 AUUUAAAUACAUCCUAUGUUAAGGUUCAAC .......(..(........)..)....... >CP000673.1/2825586-2825615 AUUUAAAUACAAUCCUUGUUAAAGUUCAAC .......(..(........)..)....... >CP000728.1/2352762-2352791 AUUUAAAUACAUCUUAUGUUACUGUUCAAC .......(..(........))......... >CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU .......(..(........).)........ >CP000728.1/2374103-2374132 AUUUAAAUACAUCUCAUGUUAAUGUUCAAC .......(..(........).)........ >CP000726.1/2256155-2256184 GCUUAAAUACAUCUUAUGUUACUGUUCAAC .......(..(........))......... >ABAX03000005.1/109886-109915 AUUUCAAUACAACUCUUGUUAUUGUUUAUC .......(..(........))......... >CP000727.1/2239349-2239378 AUUUAAAUACAUCCUAUGUUAUUGUUCAAU .......(..(........))......... >CP000673.1/2835805-2835834 AUUUAAAUACAAUUCUUGUUAAGGUUCAAC .......(..(........)..)....... >ABDY01000002.1/267925-267954 AUUUAAAUACAUACCAUGUUAAUGUUCAAC .......(..(........)...)...... >ABDO02000004.1/254636-254665 AUUUAAAUACAUCUCAUGUUAUUAUUCAAC .......(..(........)).........
2		U(AC(A)) (U()UYA)			19	95.0
>CP000728.1/2374103-2374132 AUUUAAAUACAUCUCAUGUUAAUGUUCAAC ..(.(..(..(........).)..)...). >CP000728.1/2352762-2352791 AUUUAAAUACAUCUUAUGUUACUGUUCAAC ..(.(..(..(........))...)...). >CP000673.1/2823144-2823173 AUUUAAAUACAAUCCUUGUUAAGGUUCAAC ..(.(..(..(........)..).)...). >CP000673.1/3579827-3579856 AUUUAAAUACAAAUCUUGUUAAGUUUCAAC ..(.(..(..(........)..).)...). >ABDO02000004.1/254636-254665 AUUUAAAUACAUCUCAUGUUAUUAUUCAAC ..(.(..(..(........))...)...). >CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU ..(.(..(..(........).)..)...). >ABDY01000002.1/267925-267954 AUUUAAAUACAUACCAUGUUAAUGUUCAAC ..(.(..(..(........)...))...). >CP000728.1/2376467-2376496 AUUUAAAUACAUCCUAUGUUAAUGUUCAAC ..(.(..(..(........).)..)...). >CP000673.1/2825586-2825615 AUUUAAAUACAAUCCUUGUUAAAGUUCAAC ..(.(..(..(........)..).)...). >CP000726.1/2256155-2256184 GCUUAAAUACAUCUUAUGUUACUGUUCAAC ..(.(..(..(........))...)...). >CP000728.1/2521987-2521958 AUUUAAAUACAUCUUAUGUUAAUGUUCAAC ..(.(..(..(........).)..)...). >ABDO02000004.1/251279-251308 AUUUAAAUACAUCUCAUGUCAAUGUUUAAC ..(.(..(..(........)...))...). >AE015927.1/1596015-1596044 AUUUAAAUACAACUCUUGUUAUUGUUCAAC ..(.(..(..(........))...)...). >CP000727.1/2239349-2239378 AUUUAAAUACAUCCUAUGUUAUUGUUCAAU ..(.(..(..(........))...)...). >AE015927.1/1590005-1590034 AUUUAAAUACAUCCUAUGUUAAGGUUCAAC ..(.(..(..(........)..).)...). >AM412317.1/2310339-2310368 GCUUAAAUACAUCUCAUGUUAAUGUUCAAC ..(.(..(..(........).)..)...). >ABDP01000013.1/120655-120684 UCUUAAAUACAUCCUAUGUUAAGGUUCAAC ..(.(..(..(........)..).)...). >CP000673.1/2835805-2835834 AUUUAAAUACAAUUCUUGUUAAGGUUCAAC ..(.(..(..(........)..).)...). >CP000382.1/1866234-1866263 AUUUAAAUACAUCCCAUGUUAUUGUUCAAC ..(.(..(..(........))...)...).
3		U(AC(A)) (U()UYA) (.YYNUG.)			19	95.0
>AE015927.1/1590005-1590034 AUUUAAAUACAUCCUAUGUUAAGGUUCAAC ..(.(..(..((......))..).)...). >CP000728.1/2376467-2376496 AUUUAAAUACAUCCUAUGUUAAUGUUCAAC ..(.(..(..((......)).)..)...). >ABDO02000004.1/251279-251308 AUUUAAAUACAUCUCAUGUCAAUGUUUAAC ..(.(..(..((......))...))...). >ABDO02000004.1/254636-254665 AUUUAAAUACAUCUCAUGUUAUUAUUCAAC ..(.(..(..((......)))...)...). >AM412317.1/2310339-2310368 GCUUAAAUACAUCUCAUGUUAAUGUUCAAC ..(.(..(..((......)).)..)...). >AE015927.1/1596015-1596044 AUUUAAAUACAACUCUUGUUAUUGUUCAAC ..(.(..(..((......)))...)...). >CP000673.1/2825586-2825615 AUUUAAAUACAAUCCUUGUUAAAGUUCAAC ..(.(..(..((......))..).)...). >CP000673.1/3579827-3579856 AUUUAAAUACAAAUCUUGUUAAGUUUCAAC ..(.(..(..((......))..).)...). >CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU ..(.(..(..((......)).)..)...). >CP000728.1/2374103-2374132 AUUUAAAUACAUCUCAUGUUAAUGUUCAAC ..(.(..(..((......)).)..)...). >CP000728.1/2521987-2521958 AUUUAAAUACAUCUUAUGUUAAUGUUCAAC ..(.(..(..((......)).)..)...). >CP000673.1/2823144-2823173 AUUUAAAUACAAUCCUUGUUAAGGUUCAAC ..(.(..(..((......))..).)...). >CP000382.1/1866234-1866263 AUUUAAAUACAUCCCAUGUUAUUGUUCAAC ..(.(..(..((......)))...)...). >CP000673.1/2835805-2835834 AUUUAAAUACAAUUCUUGUUAAGGUUCAAC ..(.(..(..((......))..).)...). >CP000727.1/2239349-2239378 AUUUAAAUACAUCCUAUGUUAUUGUUCAAU ..(.(..(..((......)))...)...). >ABDY01000002.1/267925-267954 AUUUAAAUACAUACCAUGUUAAUGUUCAAC ..(.(..(..((......))...))...). >CP000728.1/2352762-2352791 AUUUAAAUACAUCUUAUGUUACUGUUCAAC ..(.(..(..((......)))...)...). >ABDP01000013.1/120655-120684 UCUUAAAUACAUCCUAUGUUAAGGUUCAAC ..(.(..(..((......))..).)...). >CP000726.1/2256155-2256184 GCUUAAAUACAUCUUAUGUUACUGUUCAAC ..(.(..(..((......)))...)...).
4		U(AC(A)) (U()UYA) (.YYNUG.) N(Y(U))			19	95.0
>CP000728.1/2374103-2374132 AUUUAAAUACAUCUCAUGUUAAUGUUCAAC (.(.(..(..((......)).)..)...)) >AE015927.1/1596015-1596044 AUUUAAAUACAACUCUUGUUAUUGUUCAAC (.(.(..(..((......)))...)...)) >CP000728.1/2376467-2376496 AUUUAAAUACAUCCUAUGUUAAUGUUCAAC (.(.(..(..((......)).)..)...)) >CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU (.(.(..(..((......)).)..)...)) >ABDP01000013.1/120655-120684 UCUUAAAUACAUCCUAUGUUAAGGUUCAAC (.(.(..(..((......))..).)...)) >CP000382.1/1866234-1866263 AUUUAAAUACAUCCCAUGUUAUUGUUCAAC (.(.(..(..((......)))...)...)) >CP000728.1/2352762-2352791 AUUUAAAUACAUCUUAUGUUACUGUUCAAC (.(.(..(..((......)))...)...)) >CP000727.1/2239349-2239378 AUUUAAAUACAUCCUAUGUUAUUGUUCAAU (.(.(..(..((......)))...)...)) >ABDY01000002.1/267925-267954 AUUUAAAUACAUACCAUGUUAAUGUUCAAC (.(.(..(..((......))...))...)) >AM412317.1/2310339-2310368 GCUUAAAUACAUCUCAUGUUAAUGUUCAAC (.(.(..(..((......)).)..)...)) >CP000673.1/2823144-2823173 AUUUAAAUACAAUCCUUGUUAAGGUUCAAC (.(.(..(..((......))..).)...)) >ABDO02000004.1/254636-254665 AUUUAAAUACAUCUCAUGUUAUUAUUCAAC (.(.(..(..((......)))...)...)) >CP000673.1/2825586-2825615 AUUUAAAUACAAUCCUUGUUAAAGUUCAAC (.(.(..(..((......))..).)...)) >CP000673.1/2835805-2835834 AUUUAAAUACAAUUCUUGUUAAGGUUCAAC (.(.(..(..((......))..).)...)) >AE015927.1/1590005-1590034 AUUUAAAUACAUCCUAUGUUAAGGUUCAAC (.(.(..(..((......))..).)...)) >CP000728.1/2521987-2521958 AUUUAAAUACAUCUUAUGUUAAUGUUCAAC (.(.(..(..((......)).)..)...)) >ABDO02000004.1/251279-251308 AUUUAAAUACAUCUCAUGUCAAUGUUUAAC (.(.(..(..((......))...))...)) >CP000673.1/3579827-3579856 AUUUAAAUACAAAUCUUGUUAAGUUUCAAC (.(.(..(..((......))..).)...)) >CP000726.1/2256155-2256184 GCUUAAAUACAUCUUAUGUUACUGUUCAAC (.(.(..(..((......)))...)...))
5		U(AC(A)) (U()UYA) (.YYNUG.) N(Y(U)) A(A(U))			14	70.0
>CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU (.(.((.(..((......)).).))...)) >AM412317.1/2310339-2310368 GCUUAAAUACAUCUCAUGUUAAUGUUCAAC (.(.((.(..((......)).).))...)) >CP000727.1/2239349-2239378 AUUUAAAUACAUCCUAUGUUAUUGUUCAAU (.(.((.(..((......)))..))...)) >CP000728.1/2374103-2374132 AUUUAAAUACAUCUCAUGUUAAUGUUCAAC (.(.((.(..((......)).).))...)) >CP000728.1/2376467-2376496 AUUUAAAUACAUCCUAUGUUAAUGUUCAAC (.(.((.(..((......)).).))...)) >CP000728.1/2352762-2352791 AUUUAAAUACAUCUUAUGUUACUGUUCAAC (.(.((.(..((......)))..))...)) >AE015927.1/1596015-1596044 AUUUAAAUACAACUCUUGUUAUUGUUCAAC (.(.((.(..((......)))..))...)) >CP000673.1/2825586-2825615 AUUUAAAUACAAUCCUUGUUAAAGUUCAAC (.(.((.(..((......))..)))...)) >CP000673.1/2835805-2835834 AUUUAAAUACAAUUCUUGUUAAGGUUCAAC (.(.((.(..((......))..)))...)) >CP000673.1/2823144-2823173 AUUUAAAUACAAUCCUUGUUAAGGUUCAAC (.(.((.(..((......))..)))...)) >CP000382.1/1866234-1866263 AUUUAAAUACAUCCCAUGUUAUUGUUCAAC (.(.((.(..((......)))..))...)) >ABDP01000013.1/120655-120684 UCUUAAAUACAUCCUAUGUUAAGGUUCAAC (.(.((.(..((......))..)))...)) >AE015927.1/1590005-1590034 AUUUAAAUACAUCCUAUGUUAAGGUUCAAC (.(.((.(..((......))..)))...)) >CP000728.1/2521987-2521958 AUUUAAAUACAUCUUAUGUUAAUGUUCAAC (.(.((.(..((......)).).))...))

>CP000673.1/2823144-2823173 AUUUAAAUACAAUCCUUGUUAAGGUUCAAC .......(..(........)..)....... ..(.(..(..(........)..).)...). ..(.(..(..((......))..).)...). (.(.(..(..((......))..).)...)) (.(.((.(..((......))..)))...)) >AE015927.1/1596015-1596044 AUUUAAAUACAACUCUUGUUAUUGUUCAAC .......(..(........))......... ..(.(..(..(........))...)...). ..(.(..(..((......)))...)...). (.(.(..(..((......)))...)...)) (.(.((.(..((......)))..))...)) >CP000728.1/2521987-2521958 AUUUAAAUACAUCUUAUGUUAAUGUUCAAC .......(..(........).)........ ..(.(..(..(........).)..)...). ..(.(..(..((......)).)..)...). (.(.(..(..((......)).)..)...)) (.(.((.(..((......)).).))...)) >AM412317.1/2310339-2310368 GCUUAAAUACAUCUCAUGUUAAUGUUCAAC .......(..(........).)........ ..(.(..(..(........).)..)...). ..(.(..(..((......)).)..)...). (.(.(..(..((......)).)..)...)) (.(.((.(..((......)).).))...)) >CP000728.1/2376467-2376496 AUUUAAAUACAUCCUAUGUUAAUGUUCAAC .......(..(........).)........ ..(.(..(..(........).)..)...). ..(.(..(..((......)).)..)...). (.(.(..(..((......)).)..)...)) (.(.((.(..((......)).).))...)) >CP000382.1/1866234-1866263 AUUUAAAUACAUCCCAUGUUAUUGUUCAAC .......(..(........))......... ..(.(..(..(........))...)...). ..(.(..(..((......)))...)...). (.(.(..(..((......)))...)...)) (.(.((.(..((......)))..))...)) >ABDP01000013.1/120655-120684 UCUUAAAUACAUCCUAUGUUAAGGUUCAAC .......(..(........)..)....... ..(.(..(..(........)..).)...). ..(.(..(..((......))..).)...). (.(.(..(..((......))..).)...)) (.(.((.(..((......))..)))...)) >AE015927.1/1590005-1590034 AUUUAAAUACAUCCUAUGUUAAGGUUCAAC .......(..(........)..)....... ..(.(..(..(........)..).)...). ..(.(..(..((......))..).)...). (.(.(..(..((......))..).)...)) (.(.((.(..((......))..)))...)) >CP000673.1/2825586-2825615 AUUUAAAUACAAUCCUUGUUAAAGUUCAAC .......(..(........)..)....... ..(.(..(..(........)..).)...). ..(.(..(..((......))..).)...). (.(.(..(..((......))..).)...)) (.(.((.(..((......))..)))...)) >CP000728.1/2352762-2352791 AUUUAAAUACAUCUUAUGUUACUGUUCAAC .......(..(........))......... ..(.(..(..(........))...)...). ..(.(..(..((......)))...)...). (.(.(..(..((......)))...)...)) (.(.((.(..((......)))..))...)) >CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU .......(..(........).)........ ..(.(..(..(........).)..)...). ..(.(..(..((......)).)..)...). (.(.(..(..((......)).)..)...)) (.(.((.(..((......)).).))...)) >CP000728.1/2374103-2374132 AUUUAAAUACAUCUCAUGUUAAUGUUCAAC .......(..(........).)........ ..(.(..(..(........).)..)...). ..(.(..(..((......)).)..)...). (.(.(..(..((......)).)..)...)) (.(.((.(..((......)).).))...)) >CP000727.1/2239349-2239378 AUUUAAAUACAUCCUAUGUUAUUGUUCAAU .......(..(........))......... ..(.(..(..(........))...)...). ..(.(..(..((......)))...)...). (.(.(..(..((......)))...)...)) (.(.((.(..((......)))..))...)) >CP000673.1/2835805-2835834 AUUUAAAUACAAUUCUUGUUAAGGUUCAAC .......(..(........)..)....... ..(.(..(..(........)..).)...). ..(.(..(..((......))..).)...). (.(.(..(..((......))..).)...)) (.(.((.(..((......))..)))...)) >CP000673.1/3579827-3579856 AUUUAAAUACAAAUCUUGUUAAGUUUCAAC .......(..(........)..)....... ..(.(..(..(........)..).)...). ..(.(..(..((......))..).)...). (.(.(..(..((......))..).)...)) >ABDO02000004.1/251279-251308 AUUUAAAUACAUCUCAUGUCAAUGUUUAAC .......(..(........)...)...... ..(.(..(..(........)...))...). ..(.(..(..((......))...))...). (.(.(..(..((......))...))...)) >CP000726.1/2256155-2256184 GCUUAAAUACAUCUUAUGUUACUGUUCAAC .......(..(........))......... ..(.(..(..(........))...)...). ..(.(..(..((......)))...)...). (.(.(..(..((......)))...)...)) >ABDY01000002.1/267925-267954 AUUUAAAUACAUACCAUGUUAAUGUUCAAC .......(..(........)...)...... ..(.(..(..(........)...))...). ..(.(..(..((......))...))...). (.(.(..(..((......))...))...)) >ABDO02000004.1/254636-254665 AUUUAAAUACAUCUCAUGUUAUUAUUCAAC .......(..(........))......... ..(.(..(..(........))...)...). ..(.(..(..((......)))...)...). (.(.(..(..((......)))...)...)) >ABAX03000005.1/109886-109915 AUUUCAAUACAACUCUUGUUAUUGUUUAUC .......(..(........)).........

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	U(AC(A))			< 0.001		76.8

CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU .........1.........2.........3 123456789012345678901234567890
2	(U()UYA)			< 0.001		70.5

CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU .........1.........2.........3 123456789012345678901234567890
3	(.YYNUG.)			< 0.001		63.8

CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU .........1.........2.........3 123456789012345678901234567890
4	N(Y(U))			< 0.001		6.45

CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU .........1.........2.........3 123456789012345678901234567890
5	A(A(U))			< 0.001		4.85

CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU .........1.........2.........3 123456789012345678901234567890
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	U(AC(A))			< 0.001		76.8

CP000726.1/2253841-2253870 GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU GUUUAAAUACAUCUCAUGUUAAUGUUCAAU .........1.........2.........3 123456789012345678901234567890
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).