D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Coronavirus 3' stem-loop II-like motif (s2m)   (Rfam: RF00164)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(.CGR.().A.)
(.CG.().CG.)
G(GC(C))
R(GUA)N
(G()C)
100.0
100.0
100.0
94.1
100.0
(.CGR.().A.)

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 100 %
(± 0.0365 %)
Decision tree:

5-fold cross-validation: 97 %
(± 4 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 100 %
(± 0 %)
of NC_043101.1/3008-3050
NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.(.(((...(..((..(..(...))....)..)..).))).).
.........1.........2.........3.........4...
1234567890123456789012345678901234567890123

abstract shape: ()

Number of sequences
Structure ORBs (out of 51) (%)
1 (.CGR.().A.)
 43 84.3
>NC_002470.1/6871-6913
UGAUGCCGAGGCCACGCCGGGUAGGAUCGAGGGUACAGCAUCG
.....(...(.........................).).....
>NC_023636.1/6379-6421
GUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCAU
.....(...(.........................).).....
>NC_015934.1/7609-7651
GAAGACCGAGGCCACGCGGAGUACGAACGAGGGUACAGUCUUC
.....(...(.........................).).....
>NC_025379.1/6566-6608
GAAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUUC
.....(...(.........................).).....
>NC_015626.1/7620-7662
UUGACCCGGGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCAU
.....(...(.........................).).....
>NC_024472.1/6419-6461
AGUCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGAUU
.....(...(.........................).).....
>NC_011550.1/26329-26371
AUGUGUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(.........................).).....
>NC_011547.1/26267-26309
AUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(.........................).).....
>NC_022249.1/6675-6717
GAGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCUC
.....(...(.........................).).....
>NC_014412.1/7552-7594
CAGACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCUG
.....(...(.........................).).....
>NC_036583.1/6724-6766
GGAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC
.....(...(.........................).).....
>NC_025217.1/31347-31389
ACACACCGAGGCCACGCCGAGUAGGAACGAGGGUACAGUGUGA
.....(...(.........................).).....
>NC_013060.1/6465-6507
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUA
.....(...(.........................).).....
>NC_019494.1/6325-6367
CGCCCCCGAGGCCACGCCGAGUAGGAACGAGGGUACAGGGGCC
.....(...(.........................).).....
>NC_015626.1/7686-7728
UUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACCG
.....(...(.........................).).....
>NC_043100.1/3673-3715
UUUAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUAUG
.....(...(.........................).).....
>NC_039208.1/25201-25243
AUAUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCAUAA
.....(...(.........................).).....
>NC_034567.1/7099-7141
AAGCCCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGGGCGG
.....(...(.........................).).....
>NC_003983.1/8728-8770
ACUCGCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGCGAGU
.....(...(.........................).).....
>NC_003790.1/6702-6744
CUUUCCCGAGGCCACGGCGAGUAGCAUCGAGGGUACAGGAAAG
.....(...(.........................).).....
>NC_024701.1/6454-6496
ACCACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUGGU
.....(...(.........................).).....
>NC_004718.3/29584-29626
UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU
.....(...(.........................).).....
>NC_014470.1/29112-29154
AGUCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGACU
.....(...(.........................).).....
>NC_019027.1/6403-6445
AAUCCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGGAUA
.....(...(.........................).).....
>NC_043097.1/3068-3110
ACUUCCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGGGAGU
.....(...(.........................).).....
>NC_045512.2/29727-29769
UUUCACCGAGGCCACGCGGAGUACGAUCGAGUGUACAGUGAAC
.....(...(.........................).).....
>NC_043099.1/3196-3238
CAGAGCCGAGGCCACGCCAAGUCGGAUCGAGGGUACAGCUCAU
.....(...(.........................).).....
>NC_043100.1/3627-3669
AGCGACCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGUCACA
.....(...(.........................).).....
>NC_033821.1/6515-6557
UCUAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUAGA
.....(...(.........................).).....
>NC_043416.1/2650-2692
UGUUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUUCA
.....(...(.........................).).....
>NC_010800.1/27496-27538
CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(.........................).).....
>NC_016964.1/7825-7867
GUUGUCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGACUUA
.....(...(.........................).).....
>NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.....(...(.........................).).....
>NC_024498.1/6418-6460
AAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUU
.....(...(.........................).).....
>NC_016996.1/26007-26049
AUGAACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUUCAA
.....(...(.........................).).....
>NC_002469.1/6358-6400
CAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUG
.....(...(.........................).).....
>NC_034975.1/3398-3440
UCAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUGA
.....(...(.........................).).....
>NC_016991.1/25819-25861
UUGCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGCAC
.....(...(.........................).).....
>NC_013443.1/6419-6461
UUCCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGGAC
.....(...(.........................).).....
>NC_019026.1/6463-6505
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUU
.....(...(.........................).).....
>NC_004579.1/6505-6548
ACUACCCGAGGCCACGCCGAGUUAGGAUCGAGGGUACAGGUAGU
.....(...(.........................)..).....
>NC_044047.1/7528-7570
UGUUGUCGAGGCCACGCCGAGUAGGAUCGAGGGUACAACAACG
.....(...(.........................).).....
>NC_001451.1/27471-27513
CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA
.....(...(.........................).).....
2 (.CGR.().A.)
(.CG.().CG.)
 41 80.4
>NC_043099.1/3196-3238
CAGAGCCGAGGCCACGCCAAGUCGGAUCGAGGGUACAGCUCAU
.....(...(...(..(.......)....).....).).....
>NC_019027.1/6403-6445
AAUCCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGGAUA
.....(...(...(..(.......)....).....).).....
>NC_010800.1/27496-27538
CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(...(..(.......)....).....).).....
>NC_034567.1/7099-7141
AAGCCCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGGGCGG
.....(...(...(..(.......)....).....).).....
>NC_011550.1/26329-26371
AUGUGUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(...(..(.......)....).....).).....
>NC_023636.1/6379-6421
GUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCAU
.....(...(...(..(.......)....).....).).....
>NC_024498.1/6418-6460
AAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUU
.....(...(...(..(.......)....).....).).....
>NC_011547.1/26267-26309
AUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(...(..(.......)....).....).).....
>NC_036583.1/6724-6766
GGAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC
.....(...(...(..(.......)....).....).).....
>NC_024701.1/6454-6496
ACCACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUGGU
.....(...(...(..(.......)....).....).).....
>NC_013443.1/6419-6461
UUCCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGGAC
.....(...(...(..(.......)....).....).).....
>NC_033821.1/6515-6557
UCUAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUAGA
.....(...(...(..(.......)....).....).).....
>NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.....(...(...(..(.......)....).....).).....
>NC_002469.1/6358-6400
CAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUG
.....(...(...(..(.......)....).....).).....
>NC_043416.1/2650-2692
UGUUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUUCA
.....(...(...(..(.......)....).....).).....
>NC_016991.1/25819-25861
UUGCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGCAC
.....(...(...(..(.......)....).....).).....
>NC_025217.1/31347-31389
ACACACCGAGGCCACGCCGAGUAGGAACGAGGGUACAGUGUGA
.....(...(...(..(.......)....).....).).....
>NC_024472.1/6419-6461
AGUCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGAUU
.....(...(...(..(.......)....).....).).....
>NC_034975.1/3398-3440
UCAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUGA
.....(...(...(..(.......)....).....).).....
>NC_043100.1/3627-3669
AGCGACCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGUCACA
.....(...(...(..(.......)....).....).).....
>NC_019026.1/6463-6505
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUU
.....(...(...(..(.......)....).....).).....
>NC_025379.1/6566-6608
GAAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUUC
.....(...(...(..(.......)....).....).).....
>NC_001451.1/27471-27513
CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA
.....(...(...(..(.......)....).....).).....
>NC_013060.1/6465-6507
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUA
.....(...(...(..(.......)....).....).).....
>NC_015934.1/7609-7651
GAAGACCGAGGCCACGCGGAGUACGAACGAGGGUACAGUCUUC
.....(...(...(..(.......)....).....).).....
>NC_044047.1/7528-7570
UGUUGUCGAGGCCACGCCGAGUAGGAUCGAGGGUACAACAACG
.....(...(...(..(.......)....).....).).....
>NC_002470.1/6871-6913
UGAUGCCGAGGCCACGCCGGGUAGGAUCGAGGGUACAGCAUCG
.....(...(...(..(.......)....).....).).....
>NC_015626.1/7620-7662
UUGACCCGGGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCAU
.....(...(...(..(.......)....).....).).....
>NC_043100.1/3673-3715
UUUAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUAUG
.....(...(...(..(.......)....).....).).....
>NC_015626.1/7686-7728
UUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACCG
.....(...(...(..(.......)....).....).).....
>NC_022249.1/6675-6717
GAGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCUC
.....(...(...(..(.......)....).....).).....
>NC_004718.3/29584-29626
UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU
.....(...(...(..(.......)....).....).).....
>NC_039208.1/25201-25243
AUAUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCAUAA
.....(...(...(..(.......)....).....).).....
>NC_014412.1/7552-7594
CAGACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCUG
.....(...(...(..(.......)....).....).).....
>NC_019494.1/6325-6367
CGCCCCCGAGGCCACGCCGAGUAGGAACGAGGGUACAGGGGCC
.....(...(...(..(.......)....).....).).....
>NC_003790.1/6702-6744
CUUUCCCGAGGCCACGGCGAGUAGCAUCGAGGGUACAGGAAAG
.....(...(...(..(.......)....).....).).....
>NC_043097.1/3068-3110
ACUUCCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGGGAGU
.....(...(...(..(.......)....).....).).....
>NC_014470.1/29112-29154
AGUCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGACU
.....(...(...(..(.......)....).....).).....
>NC_016964.1/7825-7867
GUUGUCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGACUUA
.....(...(...(..(.......)....).....).).....
>NC_016996.1/26007-26049
AUGAACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUUCAA
.....(...(...(..(.......)....).....).).....
>NC_003983.1/8728-8770
ACUCGCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGCGAGU
.....(...(...(..(.......)....).....).).....
3 (.CGR.().A.)
(.CG.().CG.)
G(GC(C))
 37 72.5
>NC_002469.1/6358-6400
CAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUG
.....(...(..((..(.......)....)..)..).).....
>NC_015934.1/7609-7651
GAAGACCGAGGCCACGCGGAGUACGAACGAGGGUACAGUCUUC
.....(...(..((..(.......)....)..)..).).....
>NC_024701.1/6454-6496
ACCACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUGGU
.....(...(..((..(.......)....)..)..).).....
>NC_039208.1/25201-25243
AUAUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCAUAA
.....(...(..((..(.......)....)..)..).).....
>NC_019027.1/6403-6445
AAUCCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGGAUA
.....(...(..((..(.......)....)..)..).).....
>NC_014412.1/7552-7594
CAGACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCUG
.....(...(..((..(.......)....)..)..).).....
>NC_034975.1/3398-3440
UCAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUGA
.....(...(..((..(.......)....)..)..).).....
>NC_013060.1/6465-6507
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUA
.....(...(..((..(.......)....)..)..).).....
>NC_044047.1/7528-7570
UGUUGUCGAGGCCACGCCGAGUAGGAUCGAGGGUACAACAACG
.....(...(..((..(.......)....)..)..).).....
>NC_016996.1/26007-26049
AUGAACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUUCAA
.....(...(..((..(.......)....)..)..).).....
>NC_019026.1/6463-6505
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUU
.....(...(..((..(.......)....)..)..).).....
>NC_013443.1/6419-6461
UUCCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGGAC
.....(...(..((..(.......)....)..)..).).....
>NC_003790.1/6702-6744
CUUUCCCGAGGCCACGGCGAGUAGCAUCGAGGGUACAGGAAAG
.....(...(..((..(.......)....)..)..).).....
>NC_014470.1/29112-29154
AGUCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGACU
.....(...(..((..(.......)....)..)..).).....
>NC_043100.1/3673-3715
UUUAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUAUG
.....(...(..((..(.......)....)..)..).).....
>NC_011550.1/26329-26371
AUGUGUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(..((..(.......)....)..)..).).....
>NC_016964.1/7825-7867
GUUGUCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGACUUA
.....(...(..((..(.......)....)..)..).).....
>NC_033821.1/6515-6557
UCUAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUAGA
.....(...(..((..(.......)....)..)..).).....
>NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.....(...(..((..(.......)....)..)..).).....
>NC_002470.1/6871-6913
UGAUGCCGAGGCCACGCCGGGUAGGAUCGAGGGUACAGCAUCG
.....(...(..((..(.......)....)..)..).).....
>NC_015626.1/7686-7728
UUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACCG
.....(...(..((..(.......)....)..)..).).....
>NC_003983.1/8728-8770
ACUCGCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGCGAGU
.....(...(..((..(.......)....)..)..).).....
>NC_043416.1/2650-2692
UGUUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUUCA
.....(...(..((..(.......)....)..)..).).....
>NC_010800.1/27496-27538
CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(..((..(.......).....).).)..).....
>NC_016991.1/25819-25861
UUGCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGCAC
.....(...(..((..(.......)....)..)..).).....
>NC_043099.1/3196-3238
CAGAGCCGAGGCCACGCCAAGUCGGAUCGAGGGUACAGCUCAU
.....(...(..((..(.......)....)..))...).....
>NC_001451.1/27471-27513
CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA
.....(...(..((..(.......)....)..).)..).....
>NC_015626.1/7620-7662
UUGACCCGGGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCAU
.....(...(..((..(.......)....)..).)..).....
>NC_024472.1/6419-6461
AGUCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGAUU
.....(...(..((..(.......)....)..)..).).....
>NC_011547.1/26267-26309
AUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(..((..(.......)....)..)..).).....
>NC_036583.1/6724-6766
GGAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC
.....(...(..((..(.......)....)..)..).).....
>NC_024498.1/6418-6460
AAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUU
.....(...(..((..(.......)....)..)..).).....
>NC_025379.1/6566-6608
GAAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUUC
.....(...(..((..(.......)....)..)..).).....
>NC_043100.1/3627-3669
AGCGACCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGUCACA
.....(...(..((..(.......)....)..)..).).....
>NC_004718.3/29584-29626
UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU
.....(...(..((..(.......)....)..)..).).....
>NC_023636.1/6379-6421
GUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCAU
.....(...(..((..(.......)....)..)..).).....
>NC_022249.1/6675-6717
GAGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCUC
.....(...(..((..(.......)....)..)..).).....
4 (.CGR.().A.)
(.CG.().CG.)
G(GC(C))
R(GUA)N
 35 68.6
>NC_024701.1/6454-6496
ACCACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUGGU
.....(...(..((..(..(...))....)..)..).).....
>NC_015626.1/7686-7728
UUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACCG
.....(...(..((..(..(...))....)..)..).).....
>NC_002470.1/6871-6913
UGAUGCCGAGGCCACGCCGGGUAGGAUCGAGGGUACAGCAUCG
.....(...(..((..(..(...))....)..)..).).....
>NC_015626.1/7620-7662
UUGACCCGGGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCAU
.....(...(..((..(..(...))....)..).)..).....
>NC_024498.1/6418-6460
AAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUU
.....(...(..((..(..(...))....)..)..).).....
>NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.....(...(..((..(..(...))....)..)..).).....
>NC_004718.3/29584-29626
UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU
.....(...(..((..(..(...))....)..)..).).....
>NC_013443.1/6419-6461
UUCCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGGAC
.....(...(..((..(..(...))....)..)..).).....
>NC_025379.1/6566-6608
GAAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUUC
.....(...(..((..(..(...))....)..)..).).....
>NC_016996.1/26007-26049
AUGAACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUUCAA
.....(...(..((..(..(...))....)..)..).).....
>NC_001451.1/27471-27513
CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA
.....(...(..((..(..(...))....)..).)..).....
>NC_022249.1/6675-6717
GAGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCUC
.....(...(..((..(..(...))....)..)..).).....
>NC_013060.1/6465-6507
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUA
.....(...(..((..(..(...))....)..)..).).....
>NC_003983.1/8728-8770
ACUCGCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGCGAGU
.....(...(..((..(..(...))....)..)..).).....
>NC_023636.1/6379-6421
GUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCAU
.....(...(..((..(..(...))....)..)..).).....
>NC_016964.1/7825-7867
GUUGUCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGACUUA
.....(...(..((..(..(...))....)..)..).).....
>NC_014470.1/29112-29154
AGUCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGACU
.....(...(..((..(..(...))....)..)..).).....
>NC_036583.1/6724-6766
GGAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC
.....(...(..((..(..(...))....)..)..).).....
>NC_039208.1/25201-25243
AUAUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCAUAA
.....(...(..((..(..(...))....)..)..).).....
>NC_044047.1/7528-7570
UGUUGUCGAGGCCACGCCGAGUAGGAUCGAGGGUACAACAACG
.....(...(..((..(..(...))....)..)..).).....
>NC_002469.1/6358-6400
CAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUG
.....(...(..((..(..(...))....)..)..).).....
>NC_043100.1/3673-3715
UUUAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUAUG
.....(...(..((..(..(...))....)..)..).).....
>NC_019026.1/6463-6505
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUU
.....(...(..((..(..(...))....)..)..).).....
>NC_011550.1/26329-26371
AUGUGUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(..((..(..(...))....)..)..).).....
>NC_014412.1/7552-7594
CAGACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCUG
.....(...(..((..(..(...))....)..)..).).....
>NC_043416.1/2650-2692
UGUUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUUCA
.....(...(..((..(..(...))....)..)..).).....
>NC_019027.1/6403-6445
AAUCCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGGAUA
.....(...(..((..(..(...))....)..)..).).....
>NC_015934.1/7609-7651
GAAGACCGAGGCCACGCGGAGUACGAACGAGGGUACAGUCUUC
.....(...(..((..(..(...))....)..)..).).....
>NC_016991.1/25819-25861
UUGCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGCAC
.....(...(..((..(..(...))....)..)..).).....
>NC_011547.1/26267-26309
AUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(..((..(..(...))....)..)..).).....
>NC_034975.1/3398-3440
UCAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUGA
.....(...(..((..(..(...))....)..)..).).....
>NC_033821.1/6515-6557
UCUAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUAGA
.....(...(..((..(..(...))....)..)..).).....
>NC_024472.1/6419-6461
AGUCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGAUU
.....(...(..((..(..(...))....)..)..).).....
>NC_003790.1/6702-6744
CUUUCCCGAGGCCACGGCGAGUAGCAUCGAGGGUACAGGAAAG
.....(...(..((..(..(...))....)..)..).).....
>NC_043100.1/3627-3669
AGCGACCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGUCACA
.....(...(..((..(..(...))....)..)..).).....
5 (.CGR.().A.)
(.CG.().CG.)
G(GC(C))
R(GUA)N
(G()C)
 19 37.3
>NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_023636.1/6379-6421
GUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCAU
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_011547.1/26267-26309
AUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_002470.1/6871-6913
UGAUGCCGAGGCCACGCCGGGUAGGAUCGAGGGUACAGCAUCG
(.(..(...(..((..(..(...))....)..)..).)..).)
>NC_043100.1/3627-3669
AGCGACCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGUCACA
(.(..(...(..((..(..(...))....)..)..).)..).)
>NC_015626.1/7620-7662
UUGACCCGGGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCAU
.(.(.(...(..((..(..(...))....)..).)..).).).
>NC_016991.1/25819-25861
UUGCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGCAC
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_016996.1/26007-26049
AUGAACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUUCAA
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_043416.1/2650-2692
UGUUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUUCA
(.(..(...(..((..(..(...))....)..)..).)..).)
>NC_022249.1/6675-6717
GAGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCUC
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_011550.1/26329-26371
AUGUGUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_014470.1/29112-29154
AGUCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGACU
(.(..(...(..((..(..(...))....)..)..).)..).)
>NC_001451.1/27471-27513
CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA
.(.(.(...(..((..(..(...))....)..).)..).).).
>NC_016964.1/7825-7867
GUUGUCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGACUUA
..(.((...(..((..(..(...))....)..)..).)).)..
>NC_015934.1/7609-7651
GAAGACCGAGGCCACGCGGAGUACGAACGAGGGUACAGUCUUC
..(.((...(..((..(..(...))....)..)..).)).)..
>NC_014412.1/7552-7594
CAGACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCUG
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_036583.1/6724-6766
GGAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC
(.(..(...(..((..(..(...))....)..)..).).).).
>NC_044047.1/7528-7570
UGUUGUCGAGGCCACGCCGAGUAGGAUCGAGGGUACAACAACG
(.(..(...(..((..(..(...))....)..)..).)..).)
>NC_019026.1/6463-6505
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUU
.(.(.(...(..((..(..(...))....)..)..).).).).

>NC_002470.1/6871-6913
UGAUGCCGAGGCCACGCCGGGUAGGAUCGAGGGUACAGCAUCG
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
(.(..(...(..((..(..(...))....)..)..).)..).)
>NC_023636.1/6379-6421
GUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCAU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_015934.1/7609-7651
GAAGACCGAGGCCACGCGGAGUACGAACGAGGGUACAGUCUUC
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
..(.((...(..((..(..(...))....)..)..).)).)..
>NC_015626.1/7620-7662
UUGACCCGGGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCAU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..).)..).....
.....(...(..((..(..(...))....)..).)..).....
.(.(.(...(..((..(..(...))....)..).)..).).).
>NC_011550.1/26329-26371
AUGUGUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_011547.1/26267-26309
AUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_022249.1/6675-6717
GAGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCUC
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_014412.1/7552-7594
CAGACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUCUG
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_036583.1/6724-6766
GGAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
(.(..(...(..((..(..(...))....)..)..).).).).
>NC_014470.1/29112-29154
AGUCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGACU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
(.(..(...(..((..(..(...))....)..)..).)..).)
>NC_043100.1/3627-3669
AGCGACCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGUCACA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
(.(..(...(..((..(..(...))....)..)..).)..).)
>NC_043416.1/2650-2692
UGUUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUUCA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
(.(..(...(..((..(..(...))....)..)..).)..).)
>NC_016964.1/7825-7867
GUUGUCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGACUUA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
..(.((...(..((..(..(...))....)..)..).)).)..
>NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_016996.1/26007-26049
AUGAACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUUCAA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_016991.1/25819-25861
UUGCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGCAC
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_019026.1/6463-6505
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
.(.(.(...(..((..(..(...))....)..)..).).).).
>NC_044047.1/7528-7570
UGUUGUCGAGGCCACGCCGAGUAGGAUCGAGGGUACAACAACG
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
(.(..(...(..((..(..(...))....)..)..).)..).)
>NC_001451.1/27471-27513
CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACUA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..).)..).....
.....(...(..((..(..(...))....)..).)..).....
.(.(.(...(..((..(..(...))....)..).)..).).).
>NC_025379.1/6566-6608
GAAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUUC
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_024472.1/6419-6461
AGUCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGAUU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_013060.1/6465-6507
UUGCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGCUA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_015626.1/7686-7728
UUGUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCACCG
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_043100.1/3673-3715
UUUAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUAUG
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_039208.1/25201-25243
AUAUGCCGAGGCCACGCGGAGUACGAUCGAGGGUACAGCAUAA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_003983.1/8728-8770
ACUCGCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGCGAGU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_003790.1/6702-6744
CUUUCCCGAGGCCACGGCGAGUAGCAUCGAGGGUACAGGAAAG
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_024701.1/6454-6496
ACCACCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGUGGU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_004718.3/29584-29626
UUUCAUCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_019027.1/6403-6445
AAUCCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGGAUA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_033821.1/6515-6557
UCUAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUAGA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_024498.1/6418-6460
AAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_002469.1/6358-6400
CAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUG
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_034975.1/3398-3440
UCAAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUGA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_013443.1/6419-6461
UUCCGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCGGAC
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..)..).).....
.....(...(..((..(..(...))....)..)..).).....
>NC_043099.1/3196-3238
CAGAGCCGAGGCCACGCCAAGUCGGAUCGAGGGUACAGCUCAU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......)....)..))...).....
>NC_010800.1/27496-27538
CAGUGCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGCACAA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
.....(...(..((..(.......).....).).)..).....
>NC_025217.1/31347-31389
ACACACCGAGGCCACGCCGAGUAGGAACGAGGGUACAGUGUGA
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
>NC_019494.1/6325-6367
CGCCCCCGAGGCCACGCCGAGUAGGAACGAGGGUACAGGGGCC
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
>NC_034567.1/7099-7141
AAGCCCCGGGGCCACGCGGAGUACGAUCGAGGGUACAGGGCGG
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
>NC_043097.1/3068-3110
ACUUCCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGGGAGU
.....(...(.........................).).....
.....(...(...(..(.......)....).....).).....
>NC_045512.2/29727-29769
UUUCACCGAGGCCACGCGGAGUACGAUCGAGUGUACAGUGAAC
.....(...(.........................).).....
>NC_004579.1/6505-6548
ACUACCCGAGGCCACGCCGAGUUAGGAUCGAGGGUACAGGUAGU
.....(...(.........................)..).....

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (.CGR.().A.) < 0.001 264
NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.........1.........2.........3.........4...
1234567890123456789012345678901234567890123
2 (.CG.().CG.) < 0.001 89.8
NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.........1.........2.........3.........4...
1234567890123456789012345678901234567890123
3 G(GC(C)) < 0.001 53.3
NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.........1.........2.........3.........4...
1234567890123456789012345678901234567890123
4 R(GUA)N < 0.001 9.73
NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.........1.........2.........3.........4...
1234567890123456789012345678901234567890123
5 (G()C) < 0.001 11.6
NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.........1.........2.........3.........4...
1234567890123456789012345678901234567890123
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 .CGAGG. < 0.001 1.55e+03
NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.........1.........2.........3.........4...
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2 ((G)UA)C < 0.001 12.7
NC_043101.1/3008-3050
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
CUGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCU
.........1.........2.........3.........4...
1234567890123456789012345678901234567890123
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).