D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Small Cajal body specific RNA 21   (Rfam: RF00602)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
U(UC(C))
(.NAGNN.)
(.AG.)
R(NA(G))
A(G(A))
95.8
100.0
100.0
87.5
83.3
U(UC(C))
(.NAGNN.)
(.NAGNN.)
R(NA(G))
A(G(A))

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.8 %
(± 0.11 %)
Decision tree:

5-fold cross-validation: 96.5 %
(± 3.95 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 96.5 %
(± 3.95 %)
of AAPE02045192.1/15898-16036
AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
((((((((((..((((((((((((((......)))))))))))))).))))))))))(.((..((((((((((((((((((((...)))))(((((((((((..))))))..))))).))).))))).)))))))).))
...................................................................................................1.......................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789

abstract shape: ()(()())

Number of sequences
Structure ORBs (out of 24) (%)
1 U(UC(C))
 22 91.7
>AAEX03003635.1/15308-15448
UGGCUUGGUUUCCUGGGGCGUGGGCUCAGUGCGCCCCAUGUCCCCUCAGCCGAGCCUAGAGCACAGAGGCCUGGUCCCCCUACUACGGGAGAGGCGCUGGAGAUAGGAGCCCUGCCCUGGACCUGUCCUGGCCUCACAUUU
.........(..(................................).).............................................................................................
>AL646043.7/11714-11571
AGGCUCUAUUUCCUGGAAGGUGGGCCUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCAAUGGGAGAGAGAUGUGUUUGAAGAAGGAGCCUCACUCGGGCUGGCCUGGCUUCACAUUA
.........(..(...............................)..)................................................................................................
>AL596125.27/8000-7857
AGGCUCUAUUUCCUGGGAGGUGGGCUUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGAGAGGUGUUUGAAGAAGGGGCCUCACCCGGGCCGGCCUGGCUUCACAUUU
.........(..(................................).)................................................................................................
>AC009228.4/59361-59234
UGGCAUGAUUUCCUGCAGGUUGAGCUCAGCCAAGUACCACCCCUCAGUAAGCCUAGAGUAGAGGGGCCUGACAUCCUUUCCUUAAAUUAAACAAGGAGCCUUAUCCAGGUUGUCCUAGUCUCAUACUU
.........(..(.................................).)...............................................................................
>AAKN02049880.1/52363-52499
UGGCUCUGUUUCCUGGCAGGUGGACUUGGCUCCCUCCACCUUCCCUCAGUUGAGCCUAGAGUAGAGGGGCUGACUGUCCUGUGUGGGAGAGGUAUUUAAGAAAGGAGCCUUGCCCGGGCUGUCUCAGCCUCACAUUU
.........(..(................................).).........................................................................................
>AALT01405644.1/739-877
GGUCUCGAUUUCCUGGGGGGUGGGCUCAGUCUGUUCCACCUCCCCUCAGACUAGCCUAGAUCAAAGGCAGGGUUCUCUGCAUACUAGUAUGGUGGGUCAAGAAAUCAGCGCCAACAUGGGCUAUCCCUGCCAUACUUUU
.........(..(................................).)...........................................................................................
>ABDC01418608.1/4986-5124
UGGCUUGGUUUCCUGGGGGGUGGACUCAGCCUACUCCACCUCCCCUCAGCCGAGCCUAGAGUAGAGGGGCCAGGCAUCCUUUCUGGGGGAGAGGCGUUUAUGUAAGGAGCUUCGCCUGGGCUGUCCUAGCCUCACAUUU
.........(..(................................).)...........................................................................................
>AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
.........(..(................................).)...........................................................................................
>AAFR03049850.1/23172-23323
AGGACCCUAUUUCCUGGGGGGUGAGCUCAGUCUACCCCACCCCCCCUCAGUGGGUCCCAGAAUAGAAUGCCAGGAUGGGUCUCACUCCUACCCCAUGAACAGAGAGGAGUGUGAGACAGACACCUGCUCUGGCCAGUACUGGCAACACAUGU
..........(..(................................))........................................................................................................
>BX640578.3/41476-41338
UGGCUUGGUUUCCUGGGGGGUGGGCUCAGUGCUCUCCACCCCCUCUCAGCUAAGCCUAGAGUAGAGAGGCCAGGUACGCACCUGGGUGGGAGAGGUGCUUCUGCAGGAGCCUUGCCUGGGCUGGCCUAGCCUCACAUUU
.........(..(................................).)...........................................................................................
>AAQQ01673617.1/295-433
UGGCUCAGUUUCCUGGGGGUGGGCUCAGCCUACACCACCUCCCCUCAGCUGAGCCUAGAAUAGAGGGGCCAGGCACCCUCCUUCAUGGGAGAGGUAUUUAAGGAAGGCGCCUCGCCUGGGCUGGCCUAGCCUCACAUUU
.........(..(................................))............................................................................................
>AL121992.24/6341-6480
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGUCUACACCACCUCCCCUCAGCCAAGCCUACAGUAGAGGGCCCAGGCAUCCUCCCGUAUGGGAGAGGCGUUUGAGUAAGGAGCCUCACCUGGGGUGUCCUAGCCUCACAUUU
.........(..(................................).)............................................................................................
>AAIY01313070.1/3664-3527
UGGCUCGGUUUCCUGGGCGGUGGGCUCAGCCUCCUCCACCUCCCCUCAGACGAGCCUAGAGGAGAGAGGCCAGGCUUCCUCCCCUGGGAGUGGCUUUCAAGAAGGGAGCCUCGCCCAGGCUGUCCUAGCCUCACACUU
.........(..(................................).)..........................................................................................
>AAWR02013415.1/9829-9968
CGGCUCGAUUUCCUGGGGGGUGGGCUCAGCCUACCCCACCUCCCCUCAGACGAGCCCAGAGCAGAGAGGCUGGGCUUCCUCCCCAACAGGAGAGGCGGUUAAGACAGGAGCCUCGCCUGGGCUGUCCUUGCCUCACAUUU
.........(..(................................).)............................................................................................
>AAQR03002857.1/3077-3214
UGGUUGGUUUCCUGGGGAGUGGGCUCAGCAUACCCCACCUCCCCUCAGCCAAGCCUAGAGUAGAGAGGCCAGGCAUCCUCUCUGUGGGGGAGGCAUUCAAGUAAGGUGCCUCGCCUAGGCUAUCCAAGCCUCACAUUG
........(..(................................).)...........................................................................................
>AAPY01712703.1/1836-1974
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGCCUACCUCACCUCCCCUCAGACGAGCCUAGAGUGGAGGGGCCAGGCACCCUCCUCCGUGGAGAGGCGUUUAAGUAAAGAGCCUCGCCUGGGCUGUCCGGGCCUCACAGUU
.........(..(................................).)...........................................................................................
>AAGW02049550.1/2920-2784
UGGCUCAGUUUCCUGGGGGGUGAGCUCAGCCUCCCCCACCUCCCCUCAGCUGAGCCUAGAGGAGACAGGCCAGGCACCUGCCCCCUGGAGAGGCGUUUAAGUAAGGAGCCUCGCCUGGCUGCCCUGGCCUCACAUUU
.........(..(................................).).........................................................................................
>AAYZ01280870.1/12479-12615
UGGCUCAAUUUCCUGGGGGGUGAGCUCAGCCUCCCCCACCCUCCCUCGCCUGAGCCUAAAGUAGAGGAGCCAGGCAGGCACCACCCAGAGAGACCUUUAAGUAAGGGGCCUCCCUUGGCUGCCUUGACCUCACAUCA
.........(..(................................).).........................................................................................
>AANG01159425.1/1572-1711
CGGCUUGGUUUCCUGGGGCGUGGACUCAGCCUGCCCACCUCCCCUCAGCCGAGCCUAGAGCAGAGAGGCCUGGCUUCCUCCCCCACAGGGCAGGUGGUUGAGACAGGAACCUGGCCCCGGGCUGGCCUCGCCUCACAUUU
.........(..(................................)).............................................................................................
>AANU01204662.1/3314-3175
UGGCUUGAUUUCCUGGGGGGGUGGUCUCAGCCCACCCCACCUCCCCUCAGCCGAGCCUAGAGUAGAGGGGCCAGGCAUUCUCCCCAGGGGAGAGGUGUUGAAGCAAGGAACCUCUCCUGGGCUGUCCUAGCCUCACAUUU
.........(..(................................)..)...........................................................................................
>AAHX01064572.1/17502-17363
AGGCUCUAUUUCCUGGGAGGUGGACUCAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAAUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGGGGUUUGAAGAAGGAGCCUCACCCAGGCUAGCCUGGCUUCACAUUU
.........(..(................................).)............................................................................................
>AADA01184538.1/2869-2731
UGGCUCGAUUUCCUGGGGGGUGGUCUCAGCCCACUCCACCUCCCGUCAGUCGAGCGUAGAGUAGAGGGGCCAGGCAUCCUUUCCAGGGGAGGGGCGUUGAAGCAAGGAGCCUCUCGUGGGCUGUCCUAGCUUCACAUUU
.........(..(................................).)...........................................................................................
2 U(UC(C))
(.NAGNN.)
 17 70.8
>AANG01159425.1/1572-1711
CGGCUUGGUUUCCUGGGGCGUGGACUCAGCCUGCCCACCUCCCCUCAGCCGAGCCUAGAGCAGAGAGGCCUGGCUUCCUCCCCCACAGGGCAGGUGGUUGAGACAGGAACCUGGCCCCGGGCUGGCCUCGCCUCACAUUU
.........(..(............(.....).............)).............................................................................................
>AAIY01313070.1/3664-3527
UGGCUCGGUUUCCUGGGCGGUGGGCUCAGCCUCCUCCACCUCCCCUCAGACGAGCCUAGAGGAGAGAGGCCAGGCUUCCUCCCCUGGGAGUGGCUUUCAAGAAGGGAGCCUCGCCCAGGCUGUCCUAGCCUCACACUU
.........(..(............(......)............).)..........................................................................................
>BX640578.3/41476-41338
UGGCUUGGUUUCCUGGGGGGUGGGCUCAGUGCUCUCCACCCCCUCUCAGCUAAGCCUAGAGUAGAGAGGCCAGGUACGCACCUGGGUGGGAGAGGUGCUUCUGCAGGAGCCUUGCCUGGGCUGGCCUAGCCUCACAUUU
.........(..(............(......)............).)...........................................................................................
>AC009228.4/59361-59234
UGGCAUGAUUUCCUGCAGGUUGAGCUCAGCCAAGUACCACCCCUCAGUAAGCCUAGAGUAGAGGGGCCUGACAUCCUUUCCUUAAAUUAAACAAGGAGCCUUAUCCAGGUUGUCCUAGUCUCAUACUU
.........(..(............(......).............).)...............................................................................
>AADA01184538.1/2869-2731
UGGCUCGAUUUCCUGGGGGGUGGUCUCAGCCCACUCCACCUCCCGUCAGUCGAGCGUAGAGUAGAGGGGCCAGGCAUCCUUUCCAGGGGAGGGGCGUUGAAGCAAGGAGCCUCUCGUGGGCUGUCCUAGCUUCACAUUU
.........(..(............(......)............).)...........................................................................................
>AL121992.24/6341-6480
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGUCUACACCACCUCCCCUCAGCCAAGCCUACAGUAGAGGGCCCAGGCAUCCUCCCGUAUGGGAGAGGCGUUUGAGUAAGGAGCCUCACCUGGGGUGUCCUAGCCUCACAUUU
.........(..(............(......)............).)............................................................................................
>AAFR03049850.1/23172-23323
AGGACCCUAUUUCCUGGGGGGUGAGCUCAGUCUACCCCACCCCCCCUCAGUGGGUCCCAGAAUAGAAUGCCAGGAUGGGUCUCACUCCUACCCCAUGAACAGAGAGGAGUGUGAGACAGACACCUGCUCUGGCCAGUACUGGCAACACAUGU
..........(..(............(......)............))........................................................................................................
>AAWR02013415.1/9829-9968
CGGCUCGAUUUCCUGGGGGGUGGGCUCAGCCUACCCCACCUCCCCUCAGACGAGCCCAGAGCAGAGAGGCUGGGCUUCCUCCCCAACAGGAGAGGCGGUUAAGACAGGAGCCUCGCCUGGGCUGUCCUUGCCUCACAUUU
.........(..(............(......)............).)............................................................................................
>AAQR03002857.1/3077-3214
UGGUUGGUUUCCUGGGGAGUGGGCUCAGCAUACCCCACCUCCCCUCAGCCAAGCCUAGAGUAGAGAGGCCAGGCAUCCUCUCUGUGGGGGAGGCAUUCAAGUAAGGUGCCUCGCCUAGGCUAUCCAAGCCUCACAUUG
........(..(............(......)............).)...........................................................................................
>AL596125.27/8000-7857
AGGCUCUAUUUCCUGGGAGGUGGGCUUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGAGAGGUGUUUGAAGAAGGGGCCUCACCCGGGCCGGCCUGGCUUCACAUUU
.........(..(............(......)............).)................................................................................................
>AL646043.7/11714-11571
AGGCUCUAUUUCCUGGAAGGUGGGCCUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCAAUGGGAGAGAGAUGUGUUUGAAGAAGGAGCCUCACUCGGGCUGGCCUGGCUUCACAUUA
.........(..(............(.....)............)..)................................................................................................
>AAHX01064572.1/17502-17363
AGGCUCUAUUUCCUGGGAGGUGGACUCAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAAUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGGGGUUUGAAGAAGGAGCCUCACCCAGGCUAGCCUGGCUUCACAUUU
.........(..(............(......)............).)............................................................................................
>AALT01405644.1/739-877
GGUCUCGAUUUCCUGGGGGGUGGGCUCAGUCUGUUCCACCUCCCCUCAGACUAGCCUAGAUCAAAGGCAGGGUUCUCUGCAUACUAGUAUGGUGGGUCAAGAAAUCAGCGCCAACAUGGGCUAUCCCUGCCAUACUUUU
.........(..(............(......)............).)...........................................................................................
>AAYZ01280870.1/12479-12615
UGGCUCAAUUUCCUGGGGGGUGAGCUCAGCCUCCCCCACCCUCCCUCGCCUGAGCCUAAAGUAGAGGAGCCAGGCAGGCACCACCCAGAGAGACCUUUAAGUAAGGGGCCUCCCUUGGCUGCCUUGACCUCACAUCA
.........(..(............(......).........)....).........................................................................................
>ABDC01418608.1/4986-5124
UGGCUUGGUUUCCUGGGGGGUGGACUCAGCCUACUCCACCUCCCCUCAGCCGAGCCUAGAGUAGAGGGGCCAGGCAUCCUUUCUGGGGGAGAGGCGUUUAUGUAAGGAGCUUCGCCUGGGCUGUCCUAGCCUCACAUUU
.........(..(............(......)............).)...........................................................................................
>AAPY01712703.1/1836-1974
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGCCUACCUCACCUCCCCUCAGACGAGCCUAGAGUGGAGGGGCCAGGCACCCUCCUCCGUGGAGAGGCGUUUAAGUAAAGAGCCUCGCCUGGGCUGUCCGGGCCUCACAGUU
.........(..(............(......)............).)...........................................................................................
>AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
.........(..(............(......)............).)...........................................................................................
3 U(UC(C))
(.NAGNN.)
(.AG.)
 15 62.5
>AC009228.4/59361-59234
UGGCAUGAUUUCCUGCAGGUUGAGCUCAGCCAAGUACCACCCCUCAGUAAGCCUAGAGUAGAGGGGCCUGACAUCCUUUCCUUAAAUUAAACAAGGAGCCUUAUCCAGGUUGUCCUAGUCUCAUACUU
.........(..(............(......).............).)..............................................(..).............................
>AAQR03002857.1/3077-3214
UGGUUGGUUUCCUGGGGAGUGGGCUCAGCAUACCCCACCUCCCCUCAGCCAAGCCUAGAGUAGAGAGGCCAGGCAUCCUCUCUGUGGGGGAGGCAUUCAAGUAAGGUGCCUCGCCUAGGCUAUCCAAGCCUCACAUUG
........(..(............(......)............).)..........................................(...)............................................
>AAIY01313070.1/3664-3527
UGGCUCGGUUUCCUGGGCGGUGGGCUCAGCCUCCUCCACCUCCCCUCAGACGAGCCUAGAGGAGAGAGGCCAGGCUUCCUCCCCUGGGAGUGGCUUUCAAGAAGGGAGCCUCGCCCAGGCUGUCCUAGCCUCACACUU
.........(..(............(......)............).)..................................................(...)...................................
>AANG01159425.1/1572-1711
CGGCUUGGUUUCCUGGGGCGUGGACUCAGCCUGCCCACCUCCCCUCAGCCGAGCCUAGAGCAGAGAGGCCUGGCUUCCUCCCCCACAGGGCAGGUGGUUGAGACAGGAACCUGGCCCCGGGCUGGCCUCGCCUCACAUUU
.........(..(............(.....)............).)....................................(....)...................................................
>AAFR03049850.1/23172-23323
AGGACCCUAUUUCCUGGGGGGUGAGCUCAGUCUACCCCACCCCCCCUCAGUGGGUCCCAGAAUAGAAUGCCAGGAUGGGUCUCACUCCUACCCCAUGAACAGAGAGGAGUGUGAGACAGACACCUGCUCUGGCCAGUACUGGCAACACAUGU
..........(..(............(......)............))................................................................(...)...................................
>BX640578.3/41476-41338
UGGCUUGGUUUCCUGGGGGGUGGGCUCAGUGCUCUCCACCCCCUCUCAGCUAAGCCUAGAGUAGAGAGGCCAGGUACGCACCUGGGUGGGAGAGGUGCUUCUGCAGGAGCCUUGCCUGGGCUGGCCUAGCCUCACAUUU
.........(..(............(......)............).).......................................................(....)..............................
>AL121992.24/6341-6480
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGUCUACACCACCUCCCCUCAGCCAAGCCUACAGUAGAGGGCCCAGGCAUCCUCCCGUAUGGGAGAGGCGUUUGAGUAAGGAGCCUCACCUGGGGUGUCCUAGCCUCACAUUU
.........(..(............(......)............).)...................................................(.....)..................................
>ABDC01418608.1/4986-5124
UGGCUUGGUUUCCUGGGGGGUGGACUCAGCCUACUCCACCUCCCCUCAGCCGAGCCUAGAGUAGAGGGGCCAGGCAUCCUUUCUGGGGGAGAGGCGUUUAUGUAAGGAGCUUCGCCUGGGCUGUCCUAGCCUCACAUUU
.........(..(............(......)............).)..........................................................(..).............................
>AL596125.27/8000-7857
AGGCUCUAUUUCCUGGGAGGUGGGCUUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGAGAGGUGUUUGAAGAAGGGGCCUCACCCGGGCCGGCCUGGCUUCACAUUU
.........(..(............(......)............).).......................................................(.....)..................................
>AAHX01064572.1/17502-17363
AGGCUCUAUUUCCUGGGAGGUGGACUCAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAAUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGGGGUUUGAAGAAGGAGCCUCACCCAGGCUAGCCUGGCUUCACAUUU
.........(..(............(......)............).)...........................................................(..).............................
>AAPY01712703.1/1836-1974
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGCCUACCUCACCUCCCCUCAGACGAGCCUAGAGUGGAGGGGCCAGGCACCCUCCUCCGUGGAGAGGCGUUUAAGUAAAGAGCCUCGCCUGGGCUGUCCGGGCCUCACAGUU
.........(..(............(......)............).)...................................................(...)...................................
>AADA01184538.1/2869-2731
UGGCUCGAUUUCCUGGGGGGUGGUCUCAGCCCACUCCACCUCCCGUCAGUCGAGCGUAGAGUAGAGGGGCCAGGCAUCCUUUCCAGGGGAGGGGCGUUGAAGCAAGGAGCCUCUCGUGGGCUGUCCUAGCUUCACAUUU
.........(..(............(......)............).)...................................................(...)...................................
>AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
.........(..(............(......)............).)....................................................(....).................................
>AL646043.7/11714-11571
AGGCUCUAUUUCCUGGAAGGUGGGCCUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCAAUGGGAGAGAGAUGUGUUUGAAGAAGGAGCCUCACUCGGGCUGGCCUGGCUUCACAUUA
.........(..(............(.....)............)..)......................................................(.....)...................................
>AAWR02013415.1/9829-9968
CGGCUCGAUUUCCUGGGGGGUGGGCUCAGCCUACCCCACCUCCCCUCAGACGAGCCCAGAGCAGAGAGGCUGGGCUUCCUCCCCAACAGGAGAGGCGGUUAAGACAGGAGCCUCGCCUGGGCUGUCCUUGCCUCACAUUU
.........(..(............(......)............).)...................................................(.....)..................................
4 U(UC(C))
(.NAGNN.)
(.AG.)
R(NA(G))
 12 50.0
>AL646043.7/11714-11571
AGGCUCUAUUUCCUGGAAGGUGGGCCUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCAAUGGGAGAGAGAUGUGUUUGAAGAAGGAGCCUCACUCGGGCUGGCCUGGCUUCACAUUA
.........(..(............(.....)............)..)..............(..(....................................(.....)............................).)....
>AAQR03002857.1/3077-3214
UGGUUGGUUUCCUGGGGAGUGGGCUCAGCAUACCCCACCUCCCCUCAGCCAAGCCUAGAGUAGAGAGGCCAGGCAUCCUCUCUGUGGGGGAGGCAUUCAAGUAAGGUGCCUCGCCUAGGCUAUCCAAGCCUCACAUUG
........(..(............(......)............).)............(..(..........................(...).....................................).)....
>BX640578.3/41476-41338
UGGCUUGGUUUCCUGGGGGGUGGGCUCAGUGCUCUCCACCCCCUCUCAGCUAAGCCUAGAGUAGAGAGGCCAGGUACGCACCUGGGUGGGAGAGGUGCUUCUGCAGGAGCCUUGCCUGGGCUGGCCUAGCCUCACAUUU
.........(..(............(......)............).)............(..(.......................................(....).........................))...
>ABDC01418608.1/4986-5124
UGGCUUGGUUUCCUGGGGGGUGGACUCAGCCUACUCCACCUCCCCUCAGCCGAGCCUAGAGUAGAGGGGCCAGGCAUCCUUUCUGGGGGAGAGGCGUUUAUGUAAGGAGCUUCGCCUGGGCUGUCCUAGCCUCACAUUU
.........(..(............(......)............).)............(..(..........................................(..)........................))...
>AAWR02013415.1/9829-9968
CGGCUCGAUUUCCUGGGGGGUGGGCUCAGCCUACCCCACCUCCCCUCAGACGAGCCCAGAGCAGAGAGGCUGGGCUUCCUCCCCAACAGGAGAGGCGGUUAAGACAGGAGCCUCGCCUGGGCUGUCCUUGCCUCACAUUU
.........(..(............(......)............).)............(..(...................................(.....).............................))...
>AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
.........(..(............(......)............).)............(..(....................................(....)............................))...
>AL121992.24/6341-6480
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGUCUACACCACCUCCCCUCAGCCAAGCCUACAGUAGAGGGCCCAGGCAUCCUCCCGUAUGGGAGAGGCGUUUGAGUAAGGAGCCUCACCUGGGGUGUCCUAGCCUCACAUUU
.........(..(............(......)............).)............(..(...................................(.....).............................))...
>AL596125.27/8000-7857
AGGCUCUAUUUCCUGGGAGGUGGGCUUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGAGAGGUGUUUGAAGAAGGGGCCUCACCCGGGCCGGCCUGGCUUCACAUUU
.........(..(............(......)............).)..............(..(.....................................(.....)...........................).)....
>AAHX01064572.1/17502-17363
AGGCUCUAUUUCCUGGGAGGUGGACUCAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAAUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGGGGUUUGAAGAAGGAGCCUCACCCAGGCUAGCCUGGCUUCACAUUU
.........(..(............(......)............).)..............(..(.........................................(..)......................).)....
>AADA01184538.1/2869-2731
UGGCUCGAUUUCCUGGGGGGUGGUCUCAGCCCACUCCACCUCCCGUCAGUCGAGCGUAGAGUAGAGGGGCCAGGCAUCCUUUCCAGGGGAGGGGCGUUGAAGCAAGGAGCCUCUCGUGGGCUGUCCUAGCUUCACAUUU
.........(..(............(......)............).)............(..(...................................(...)..............................))...
>AAIY01313070.1/3664-3527
UGGCUCGGUUUCCUGGGCGGUGGGCUCAGCCUCCUCCACCUCCCCUCAGACGAGCCUAGAGGAGAGAGGCCAGGCUUCCUCCCCUGGGAGUGGCUUUCAAGAAGGGAGCCUCGCCCAGGCUGUCCUAGCCUCACACUU
.........(..(............(......)............).)............(..(..................................(...)............................).)....
>AAPY01712703.1/1836-1974
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGCCUACCUCACCUCCCCUCAGACGAGCCUAGAGUGGAGGGGCCAGGCACCCUCCUCCGUGGAGAGGCGUUUAAGUAAAGAGCCUCGCCUGGGCUGUCCGGGCCUCACAGUU
.........(..(............(......)............).)..............(..(.................................(...)............................).)....
5 U(UC(C))
(.NAGNN.)
(.AG.)
R(NA(G))
A(G(A))
 10 41.7
>AAWR02013415.1/9829-9968
CGGCUCGAUUUCCUGGGGGGUGGGCUCAGCCUACCCCACCUCCCCUCAGACGAGCCCAGAGCAGAGAGGCUGGGCUUCCUCCCCAACAGGAGAGGCGGUUAAGACAGGAGCCUCGCCUGGGCUGUCCUUGCCUCACAUUU
.........(..(............(......)............).).........(.((..(...................................(.....).............................)).))
>AL596125.27/8000-7857
AGGCUCUAUUUCCUGGGAGGUGGGCUUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGAGAGGUGUUUGAAGAAGGGGCCUCACCCGGGCCGGCCUGGCUUCACAUUU
.........(..(............(......)............).).........(.(..(..(.....................................(.....)...........................).)..))
>AADA01184538.1/2869-2731
UGGCUCGAUUUCCUGGGGGGUGGUCUCAGCCCACUCCACCUCCCGUCAGUCGAGCGUAGAGUAGAGGGGCCAGGCAUCCUUUCCAGGGGAGGGGCGUUGAAGCAAGGAGCCUCUCGUGGGCUGUCCUAGCUUCACAUUU
.........(..(............(......)............).).........(.((..(...................................(...)..............................)).))
>AAHX01064572.1/17502-17363
AGGCUCUAUUUCCUGGGAGGUGGACUCAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAAUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGGGGUUUGAAGAAGGAGCCUCACCCAGGCUAGCCUGGCUUCACAUUU
.........(..(............(......)............).).........(.(..(..(.........................................(..)......................).)..))
>AAPY01712703.1/1836-1974
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGCCUACCUCACCUCCCCUCAGACGAGCCUAGAGUGGAGGGGCCAGGCACCCUCCUCCGUGGAGAGGCGUUUAAGUAAAGAGCCUCGCCUGGGCUGUCCGGGCCUCACAGUU
.........(..(............(......)............).).........(.(..(..(.................................(...)............................).)..))
>AAIY01313070.1/3664-3527
UGGCUCGGUUUCCUGGGCGGUGGGCUCAGCCUCCUCCACCUCCCCUCAGACGAGCCUAGAGGAGAGAGGCCAGGCUUCCUCCCCUGGGAGUGGCUUUCAAGAAGGGAGCCUCGCCCAGGCUGUCCUAGCCUCACACUU
.........(..(............(......)............).).........(.((..(..................................(...)............................).)..))
>ABDC01418608.1/4986-5124
UGGCUUGGUUUCCUGGGGGGUGGACUCAGCCUACUCCACCUCCCCUCAGCCGAGCCUAGAGUAGAGGGGCCAGGCAUCCUUUCUGGGGGAGAGGCGUUUAUGUAAGGAGCUUCGCCUGGGCUGUCCUAGCCUCACAUUU
.........(..(............(......)............).).........(.((..(..........................................(..)........................)).))
>BX640578.3/41476-41338
UGGCUUGGUUUCCUGGGGGGUGGGCUCAGUGCUCUCCACCCCCUCUCAGCUAAGCCUAGAGUAGAGAGGCCAGGUACGCACCUGGGUGGGAGAGGUGCUUCUGCAGGAGCCUUGCCUGGGCUGGCCUAGCCUCACAUUU
.........(..(............(......)............).).........(.((..(.......................................(....).........................)).))
>AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
.........(..(............(......)............).).........(.((..(....................................(....)............................)).))
>AL646043.7/11714-11571
AGGCUCUAUUUCCUGGAAGGUGGGCCUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCAAUGGGAGAGAGAUGUGUUUGAAGAAGGAGCCUCACUCGGGCUGGCCUGGCUUCACAUUA
.........(..(............(.....)............)..).........(.(..(..(....................................(.....)............................).)..))

>AL646043.7/11714-11571
AGGCUCUAUUUCCUGGAAGGUGGGCCUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCAAUGGGAGAGAGAUGUGUUUGAAGAAGGAGCCUCACUCGGGCUGGCCUGGCUUCACAUUA
.........(..(...............................)..)................................................................................................
.........(..(............(.....)............)..)................................................................................................
.........(..(............(.....)............)..)......................................................(.....)...................................
.........(..(............(.....)............)..)..............(..(....................................(.....)............................).)....
.........(..(............(.....)............)..).........(.(..(..(....................................(.....)............................).)..))
>AL596125.27/8000-7857
AGGCUCUAUUUCCUGGGAGGUGGGCUUAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAGUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGAGAGGUGUUUGAAGAAGGGGCCUCACCCGGGCCGGCCUGGCUUCACAUUU
.........(..(................................).)................................................................................................
.........(..(............(......)............).)................................................................................................
.........(..(............(......)............).).......................................................(.....)..................................
.........(..(............(......)............).)..............(..(.....................................(.....)...........................).)....
.........(..(............(......)............).).........(.(..(..(.....................................(.....)...........................).)..))
>ABDC01418608.1/4986-5124
UGGCUUGGUUUCCUGGGGGGUGGACUCAGCCUACUCCACCUCCCCUCAGCCGAGCCUAGAGUAGAGGGGCCAGGCAUCCUUUCUGGGGGAGAGGCGUUUAUGUAAGGAGCUUCGCCUGGGCUGUCCUAGCCUCACAUUU
.........(..(................................).)...........................................................................................
.........(..(............(......)............).)...........................................................................................
.........(..(............(......)............).)..........................................................(..).............................
.........(..(............(......)............).)............(..(..........................................(..)........................))...
.........(..(............(......)............).).........(.((..(..........................................(..)........................)).))
>AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
.........(..(................................).)...........................................................................................
.........(..(............(......)............).)...........................................................................................
.........(..(............(......)............).)....................................................(....).................................
.........(..(............(......)............).)............(..(....................................(....)............................))...
.........(..(............(......)............).).........(.((..(....................................(....)............................)).))
>BX640578.3/41476-41338
UGGCUUGGUUUCCUGGGGGGUGGGCUCAGUGCUCUCCACCCCCUCUCAGCUAAGCCUAGAGUAGAGAGGCCAGGUACGCACCUGGGUGGGAGAGGUGCUUCUGCAGGAGCCUUGCCUGGGCUGGCCUAGCCUCACAUUU
.........(..(................................).)...........................................................................................
.........(..(............(......)............).)...........................................................................................
.........(..(............(......)............).).......................................................(....)..............................
.........(..(............(......)............).)............(..(.......................................(....).........................))...
.........(..(............(......)............).).........(.((..(.......................................(....).........................)).))
>AAIY01313070.1/3664-3527
UGGCUCGGUUUCCUGGGCGGUGGGCUCAGCCUCCUCCACCUCCCCUCAGACGAGCCUAGAGGAGAGAGGCCAGGCUUCCUCCCCUGGGAGUGGCUUUCAAGAAGGGAGCCUCGCCCAGGCUGUCCUAGCCUCACACUU
.........(..(................................).)..........................................................................................
.........(..(............(......)............).)..........................................................................................
.........(..(............(......)............).)..................................................(...)...................................
.........(..(............(......)............).)............(..(..................................(...)............................).)....
.........(..(............(......)............).).........(.((..(..................................(...)............................).)..))
>AAWR02013415.1/9829-9968
CGGCUCGAUUUCCUGGGGGGUGGGCUCAGCCUACCCCACCUCCCCUCAGACGAGCCCAGAGCAGAGAGGCUGGGCUUCCUCCCCAACAGGAGAGGCGGUUAAGACAGGAGCCUCGCCUGGGCUGUCCUUGCCUCACAUUU
.........(..(................................).)............................................................................................
.........(..(............(......)............).)............................................................................................
.........(..(............(......)............).)...................................................(.....)..................................
.........(..(............(......)............).)............(..(...................................(.....).............................))...
.........(..(............(......)............).).........(.((..(...................................(.....).............................)).))
>AAPY01712703.1/1836-1974
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGCCUACCUCACCUCCCCUCAGACGAGCCUAGAGUGGAGGGGCCAGGCACCCUCCUCCGUGGAGAGGCGUUUAAGUAAAGAGCCUCGCCUGGGCUGUCCGGGCCUCACAGUU
.........(..(................................).)...........................................................................................
.........(..(............(......)............).)...........................................................................................
.........(..(............(......)............).)...................................................(...)...................................
.........(..(............(......)............).)..............(..(.................................(...)............................).)....
.........(..(............(......)............).).........(.(..(..(.................................(...)............................).)..))
>AAHX01064572.1/17502-17363
AGGCUCUAUUUCCUGGGAGGUGGACUCAGCCUACCCCACUUCCCCUCAGCAGAGCCUAGAAUAAAGGGGCCAGGCCUCCUCCCCUAUGGGAGAGGGGUUUGAAGAAGGAGCCUCACCCAGGCUAGCCUGGCUUCACAUUU
.........(..(................................).)............................................................................................
.........(..(............(......)............).)............................................................................................
.........(..(............(......)............).)...........................................................(..).............................
.........(..(............(......)............).)..............(..(.........................................(..)......................).)....
.........(..(............(......)............).).........(.(..(..(.........................................(..)......................).)..))
>AADA01184538.1/2869-2731
UGGCUCGAUUUCCUGGGGGGUGGUCUCAGCCCACUCCACCUCCCGUCAGUCGAGCGUAGAGUAGAGGGGCCAGGCAUCCUUUCCAGGGGAGGGGCGUUGAAGCAAGGAGCCUCUCGUGGGCUGUCCUAGCUUCACAUUU
.........(..(................................).)...........................................................................................
.........(..(............(......)............).)...........................................................................................
.........(..(............(......)............).)...................................................(...)...................................
.........(..(............(......)............).)............(..(...................................(...)..............................))...
.........(..(............(......)............).).........(.((..(...................................(...)..............................)).))
>AL121992.24/6341-6480
UGGCUCGGUUUCCUGGGGGGUGGGCUCAGUCUACACCACCUCCCCUCAGCCAAGCCUACAGUAGAGGGCCCAGGCAUCCUCCCGUAUGGGAGAGGCGUUUGAGUAAGGAGCCUCACCUGGGGUGUCCUAGCCUCACAUUU
.........(..(................................).)............................................................................................
.........(..(............(......)............).)............................................................................................
.........(..(............(......)............).)...................................................(.....)..................................
.........(..(............(......)............).)............(..(...................................(.....).............................))...
>AAQR03002857.1/3077-3214
UGGUUGGUUUCCUGGGGAGUGGGCUCAGCAUACCCCACCUCCCCUCAGCCAAGCCUAGAGUAGAGAGGCCAGGCAUCCUCUCUGUGGGGGAGGCAUUCAAGUAAGGUGCCUCGCCUAGGCUAUCCAAGCCUCACAUUG
........(..(................................).)...........................................................................................
........(..(............(......)............).)...........................................................................................
........(..(............(......)............).)..........................................(...)............................................
........(..(............(......)............).)............(..(..........................(...).....................................).)....
>AC009228.4/59361-59234
UGGCAUGAUUUCCUGCAGGUUGAGCUCAGCCAAGUACCACCCCUCAGUAAGCCUAGAGUAGAGGGGCCUGACAUCCUUUCCUUAAAUUAAACAAGGAGCCUUAUCCAGGUUGUCCUAGUCUCAUACUU
.........(..(.................................).)...............................................................................
.........(..(............(......).............).)...............................................................................
.........(..(............(......).............).)..............................................(..).............................
>AAFR03049850.1/23172-23323
AGGACCCUAUUUCCUGGGGGGUGAGCUCAGUCUACCCCACCCCCCCUCAGUGGGUCCCAGAAUAGAAUGCCAGGAUGGGUCUCACUCCUACCCCAUGAACAGAGAGGAGUGUGAGACAGACACCUGCUCUGGCCAGUACUGGCAACACAUGU
..........(..(................................))........................................................................................................
..........(..(............(......)............))........................................................................................................
..........(..(............(......)............))................................................................(...)...................................
>AANG01159425.1/1572-1711
CGGCUUGGUUUCCUGGGGCGUGGACUCAGCCUGCCCACCUCCCCUCAGCCGAGCCUAGAGCAGAGAGGCCUGGCUUCCUCCCCCACAGGGCAGGUGGUUGAGACAGGAACCUGGCCCCGGGCUGGCCUCGCCUCACAUUU
.........(..(................................)).............................................................................................
.........(..(............(.....).............)).............................................................................................
.........(..(............(.....)............).)....................................(....)...................................................
>AALT01405644.1/739-877
GGUCUCGAUUUCCUGGGGGGUGGGCUCAGUCUGUUCCACCUCCCCUCAGACUAGCCUAGAUCAAAGGCAGGGUUCUCUGCAUACUAGUAUGGUGGGUCAAGAAAUCAGCGCCAACAUGGGCUAUCCCUGCCAUACUUUU
.........(..(................................).)...........................................................................................
.........(..(............(......)............).)...........................................................................................
>AAYZ01280870.1/12479-12615
UGGCUCAAUUUCCUGGGGGGUGAGCUCAGCCUCCCCCACCCUCCCUCGCCUGAGCCUAAAGUAGAGGAGCCAGGCAGGCACCACCCAGAGAGACCUUUAAGUAAGGGGCCUCCCUUGGCUGCCUUGACCUCACAUCA
.........(..(................................).).........................................................................................
.........(..(............(......).........)....).........................................................................................
>AAEX03003635.1/15308-15448
UGGCUUGGUUUCCUGGGGCGUGGGCUCAGUGCGCCCCAUGUCCCCUCAGCCGAGCCUAGAGCACAGAGGCCUGGUCCCCCUACUACGGGAGAGGCGCUGGAGAUAGGAGCCCUGCCCUGGACCUGUCCUGGCCUCACAUUU
.........(..(................................).).............................................................................................
>AAKN02049880.1/52363-52499
UGGCUCUGUUUCCUGGCAGGUGGACUUGGCUCCCUCCACCUUCCCUCAGUUGAGCCUAGAGUAGAGGGGCUGACUGUCCUGUGUGGGAGAGGUAUUUAAGAAAGGAGCCUUGCCCGGGCUGUCUCAGCCUCACAUUU
.........(..(................................).).........................................................................................
>AAQQ01673617.1/295-433
UGGCUCAGUUUCCUGGGGGUGGGCUCAGCCUACACCACCUCCCCUCAGCUGAGCCUAGAAUAGAGGGGCCAGGCACCCUCCUUCAUGGGAGAGGUAUUUAAGGAAGGCGCCUCGCCUGGGCUGGCCUAGCCUCACAUUU
.........(..(................................))............................................................................................
>AAGW02049550.1/2920-2784
UGGCUCAGUUUCCUGGGGGGUGAGCUCAGCCUCCCCCACCUCCCCUCAGCUGAGCCUAGAGGAGACAGGCCAGGCACCUGCCCCCUGGAGAGGCGUUUAAGUAAGGAGCCUCGCCUGGCUGCCCUGGCCUCACAUUU
.........(..(................................).).........................................................................................
>AANU01204662.1/3314-3175
UGGCUUGAUUUCCUGGGGGGGUGGUCUCAGCCCACCCCACCUCCCCUCAGCCGAGCCUAGAGUAGAGGGGCCAGGCAUUCUCCCCAGGGGAGAGGUGUUGAAGCAAGGAACCUCUCCUGGGCUGUCCUAGCCUCACAUUU
.........(..(................................)..)...........................................................................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 U(UC(C)) < 0.001 17.2
AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
...................................................................................................1.......................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
2 (.NAGNN.) < 0.001 5.82
AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
...................................................................................................1.......................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
3 (.AG.) < 0.001 2.16
AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
...................................................................................................1.......................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
4 A(G(A)) < 0.001 6.84
AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
...................................................................................................1.......................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
5 R(NA(G)) < 0.001 2.76
AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
...................................................................................................1.......................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 U(UC(C)) < 0.001 17.2
AAPE02045192.1/15898-16036
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
UAGCUCGGUUUCCUGGGAGGUGGGCUUAGUCUGACCCACCUCCCCUCAGACGAGCUGAGAGUAGAGAGGCCGGGCUUCCUCCCCAUGGGAGAGGUGGUUACGAGAGGAGCCUCACCUAGACUGUCCUUGCCUCACAUUU
...................................................................................................1.......................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).