D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-188   (Rfam: RF01897)


Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented

(NUCUN)
(.C.().YYY.)
(CN()CN)
Y(Y(C))
N(C(C))

91.7
100.0
91.7
100.0
100.0

(NUCUN)
(.C.().YYY.)
(CN()CN)

% of positive sequence with ORB






Deep neural network:

5-fold cross-validation: 99.9 %
(± 0.0366 %)

Decision tree:

5-fold cross-validation: 92.9 %
(± 13.2 %)

D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 92.6 %
(± 13.2 %)
of AY865950.1/143-248
AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
....(.(((..((((((((((.(((((((((((((((((((((..((((((.....))))))..))))))))))))))))))))).))))))))))...))).)..
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456

abstract shape: ()

Number of sequences
Structure ORBs (out of 12) (%)
1 (NUCUN)
11 91.7
>AAFC03003598.1/102742-102636
GAACCUUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCGGCUUUUC
...................................................(.....).................................................
>AAHX01109195.1/15201-15307
GAACCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGCGAGCUCUCUGAAAACUCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCC
...................................................(.....).................................................
>AC207100.2/80625-80731
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAACUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
...................................................(.....).................................................
>AAWR02023860.1/6393-6498
ACCUUCUGAUUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCUUUUCCUUCC
..................................................(.....).................................................
>AY865948.1/447-553
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
...................................................(.....).................................................
>AAHX01109195.1/14801-14906
GCCUACAGAUUUGCUUUUUCUCUUCCAUGCCUUGAGUGUAGGACUGUUGACAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGAGCAAGCCUUCUCUUCUC
..................................................(.....).................................................
>AAFC03070558.1/67548-67443
GAAGAAUGAACUGCUCCUUCUCCCGUACCCAUUGCAUAUCGGAGCUGUGAAUUCUCAAAGCACCUCCUAUGUGCAUGGAUUACAGGAGGGGGGAGCCCUGUCAUCA
..................................................(.....).................................................
>AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
..................................................(.....).................................................
>AY865949.1/110-215
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCAAGCCUUCUCUUCCC
..................................................(.....).................................................
>AAPE02033846.1/35993-36098
GAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAGCACCUCCUGUGUGCAUGGAUUACAGGAGGGCGAGCCUUGUCAUCAU
..................................................(.....).................................................
>AACN010221336.1/1105-1210
ACCUUCUGACUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGUAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCACCUCCUUCC
..................................................(.....).................................................
2 (NUCUN)
(.C.().YYY.)
10 83.3
>AAFC03070558.1/67548-67443
GAAGAAUGAACUGCUCCUUCUCCCGUACCCAUUGCAUAUCGGAGCUGUGAAUUCUCAAAGCACCUCCUAUGUGCAUGGAUUACAGGAGGGGGGAGCCCUGUCAUCA
.........(..(.....................................(.....)......................................)...)......
>AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
........(..(......................................(.....)......................................)...)......
>AAPE02033846.1/35993-36098
GAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAGCACCUCCUGUGUGCAUGGAUUACAGGAGGGCGAGCCUUGUCAUCAU
.........(..(.....................................(.....).....................................)...).......
>AY865949.1/110-215
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCAAGCCUUCUCUUCCC
........(..(......................................(.....)......................................)...)......
>AAFC03003598.1/102742-102636
GAACCUUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCGGCUUUUC
.........(..(......................................(.....).....................................)...).......
>AC207100.2/80625-80731
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAACUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
.......(....(......................................(.....).....................................)...).......
>AAHX01109195.1/15201-15307
GAACCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGCGAGCUCUCUGAAAACUCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCC
......(.....(......................................(.....).....................................)...).......
>AY865948.1/447-553
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
.......(....(......................................(.....).....................................)...).......
>AAWR02023860.1/6393-6498
ACCUUCUGAUUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCUUUUCCUUCC
....(....(........................................(.....)........................................)...)....
>AACN010221336.1/1105-1210
ACCUUCUGACUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGUAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCACCUCCUUCC
........(..(......................................(.....)......................................)....).....
3 (NUCUN)
(.C.().YYY.)
(CN()CN)
9 75.0
>AAHX01109195.1/15201-15307
GAACCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGCGAGCUCUCUGAAAACUCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCC
......(.....(.........(..(.........................(.....)........................)..).........)...).......
>AAFC03003598.1/102742-102636
GAACCUUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCGGCUUUUC
.........(..(.........(..(.........................(.....)........................)..).........)...).......
>AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
........(..(..............................(..(....(.....)....)..)..............................)...)......
>AAWR02023860.1/6393-6498
ACCUUCUGAUUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCUUUUCCUUCC
....(..(..................................(..(....(.....)....)..)..................................)...)..
>AC207100.2/80625-80731
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAACUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
.......(....(.........(..(.........................(.....)........................)..).........)...).......
>AY865948.1/447-553
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
.......(....(.........(..(.........................(.....)........................)..).........)...).......
>AY865949.1/110-215
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCAAGCCUUCUCUUCCC
........(..(..............................(..(....(.....)....)..)..............................)...)......
>AAPE02033846.1/35993-36098
GAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAGCACCUCCUGUGUGCAUGGAUUACAGGAGGGCGAGCCUUGUCAUCAU
.........(..(.........(..(........................(.....)........................)..).........)...).......
>AACN010221336.1/1105-1210
ACCUUCUGACUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGUAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCACCUCCUUCC
....(..(..................................(..(....(.....)....)..).................................)...)...
4 (NUCUN)
(.C.().YYY.)
(CN()CN)
Y(Y(C))
9 75.0
>AAPE02033846.1/35993-36098
GAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAGCACCUCCUGUGUGCAUGGAUUACAGGAGGGCGAGCCUUGUCAUCAU
.........(..(....(.(..(..(........................(.....)........................)..)..)).....)...).......
>AC207100.2/80625-80731
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAACUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
.......(....(....(.(..(..(.........................(.....)........................)..)..)).....)...).......
>AY865948.1/447-553
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
.......(....(....(.(..(..(.........................(.....)........................)..)..)).....)...).......
>AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
........(..(...........(.(................(..(....(.....)....)..)................).)...........)...)......
>AY865949.1/110-215
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCAAGCCUUCUCUUCCC
........(..(...........(.(................(..(....(.....)....)..)................).)...........)...)......
>AACN010221336.1/1105-1210
ACCUUCUGACUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGUAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCACCUCCUUCC
....(..(...........(.(....................(..(....(.....)....)..)...................))............)...)...
>AAHX01109195.1/15201-15307
GAACCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGCGAGCUCUCUGAAAACUCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCC
......(.....(....(.(..(..(.........................(.....)........................)..)..)).....)...).......
>AAFC03003598.1/102742-102636
GAACCUUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCGGCUUUUC
.........(..(....(.(..(..(.........................(.....)........................)..)..)).....)...).......
>AAWR02023860.1/6393-6498
ACCUUCUGAUUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCUUUUCCUUCC
....(..(...........(.(....................(..(....(.....)....)..)....................).)...........)...)..
5 (NUCUN)
(.C.().YYY.)
(CN()CN)
Y(Y(C))
N(C(C))
6 50.0
>AY865948.1/447-553
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
..(.(..(....(....(.(..(..(.........................(.....)........................)..)..)).....)...).))....
>AC207100.2/80625-80731
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAACUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
..(.(..(....(....(.(..(..(.........................(.....)........................)..)..)).....)...).))....
>AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
....(.(.(..(...........(.(................(..(....(.....)....)..)................).)...........)...).).)..
>AY865949.1/110-215
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCAAGCCUUCUCUUCCC
....(.(.(..(...........(.(................(..(....(.....)....)..)................).)...........)...).).)..
>AAHX01109195.1/15201-15307
GAACCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGCGAGCUCUCUGAAAACUCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCC
..(.(.(.....(....(.(..(..(.........................(.....)........................)..)..)).....)...).).)...
>AACN010221336.1/1105-1210
ACCUUCUGACUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGUAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCACCUCCUUCC
(.(.(..(...........(.(....................(..(....(.....)....)..)...................))............)...).))

>AAHX01109195.1/15201-15307
GAACCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGCGAGCUCUCUGAAAACUCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCC
...................................................(.....).................................................
......(.....(......................................(.....).....................................)...).......
......(.....(.........(..(.........................(.....)........................)..).........)...).......
......(.....(....(.(..(..(.........................(.....)........................)..)..)).....)...).......
..(.(.(.....(....(.(..(..(.........................(.....)........................)..)..)).....)...).).)...
>AC207100.2/80625-80731
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAACUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
...................................................(.....).................................................
.......(....(......................................(.....).....................................)...).......
.......(....(.........(..(.........................(.....)........................)..).........)...).......
.......(....(....(.(..(..(.........................(.....)........................)..)..)).....)...).......
..(.(..(....(....(.(..(..(.........................(.....)........................)..)..)).....)...).))....
>AY865948.1/447-553
AAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGCGAGCCUCAGCUUUCC
...................................................(.....).................................................
.......(....(......................................(.....).....................................)...).......
.......(....(.........(..(.........................(.....)........................)..).........)...).......
.......(....(....(.(..(..(.........................(.....)........................)..)..)).....)...).......
..(.(..(....(....(.(..(..(.........................(.....)........................)..)..)).....)...).))....
>AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
..................................................(.....).................................................
........(..(......................................(.....)......................................)...)......
........(..(..............................(..(....(.....)....)..)..............................)...)......
........(..(...........(.(................(..(....(.....)....)..)................).)...........)...)......
....(.(.(..(...........(.(................(..(....(.....)....)..)................).)...........)...).).)..
>AY865949.1/110-215
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCAAGCCUUCUCUUCCC
..................................................(.....).................................................
........(..(......................................(.....)......................................)...)......
........(..(..............................(..(....(.....)....)..)..............................)...)......
........(..(...........(.(................(..(....(.....)....)..)................).)...........)...)......
....(.(.(..(...........(.(................(..(....(.....)....)..)................).)...........)...).).)..
>AACN010221336.1/1105-1210
ACCUUCUGACUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGUAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCACCUCCUUCC
..................................................(.....).................................................
........(..(......................................(.....)......................................)....).....
....(..(..................................(..(....(.....)....)..).................................)...)...
....(..(...........(.(....................(..(....(.....)....)..)...................))............)...)...
(.(.(..(...........(.(....................(..(....(.....)....)..)...................))............)...).))
>AAFC03003598.1/102742-102636
GAACCUUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCGGCUUUUC
...................................................(.....).................................................
.........(..(......................................(.....).....................................)...).......
.........(..(.........(..(.........................(.....)........................)..).........)...).......
.........(..(....(.(..(..(.........................(.....)........................)..)..)).....)...).......
>AAWR02023860.1/6393-6498
ACCUUCUGAUUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCUUUUCCUUCC
..................................................(.....).................................................
....(....(........................................(.....)........................................)...)....
....(..(..................................(..(....(.....)....)..)..................................)...)..
....(..(...........(.(....................(..(....(.....)....)..)....................).)...........)...)..
>AAPE02033846.1/35993-36098
GAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAGCACCUCCUGUGUGCAUGGAUUACAGGAGGGCGAGCCUUGUCAUCAU
..................................................(.....).................................................
.........(..(.....................................(.....).....................................)...).......
.........(..(.........(..(........................(.....)........................)..).........)...).......
.........(..(....(.(..(..(........................(.....)........................)..)..)).....)...).......
>AAFC03070558.1/67548-67443
GAAGAAUGAACUGCUCCUUCUCCCGUACCCAUUGCAUAUCGGAGCUGUGAAUUCUCAAAGCACCUCCUAUGUGCAUGGAUUACAGGAGGGGGGAGCCCUGUCAUCA
..................................................(.....).................................................
.........(..(.....................................(.....)......................................)...)......
>AAHX01109195.1/14801-14906
GCCUACAGAUUUGCUUUUUCUCUUCCAUGCCUUGAGUGUAGGACUGUUGACAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGAGCAAGCCUUCUCUUCUC
..................................................(.....).................................................

ORB p-value ORB frequency
(per structure per nucleotide)
Means
ratio
1 (NUCUN) < 0.001 54.8
AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
2 (.C.().YYY.) < 0.001 9.07
AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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3 (CN()CN) < 0.001 14.6
AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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4 N(C(C)) < 0.001 2.49
AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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5 Y(Y(C)) < 0.001 1.35
AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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ORB p-value ORB frequency
(per structure per nucleotide)
Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide)
Means
ratio
1 (NUCUY) < 0.001 88.7
AY865950.1/143-248
ACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCC
...................................................................................................1......
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0......
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NCM p-value NCM frequency
(per structure per nucleotide)
Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).