D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

mir-16 microRNA precursor family   (Rfam: RF00254)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(.UA.().NA.)
(.NA.().UR.)
(.GN.().NC.)
(NU()NN)
((G)YR)A
(.NYRNR.)
Y(NR(N))
C(A(G))
((Y)UG)Y
C(A(C))
U(G(N))
100.0
100.0
100.0
100.0
100.0
100.0
100.0
100.0
91.7
100.0
100.0
(.UA.().NA.)
(.GN.().NC.)
(NU()NN)
((G)YR)A
(.NYRNR.)
Y(NR(N))

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.8 %
(± 0.0365 %)
Decision tree:

5-fold cross-validation: 83 %
(± 8.94 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 88.6 %
(± 10.2 %)
of AF480552.1/1-81
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
((..(.((..(((.(((.(...(..(((..((..(.((......).)).))..)))..)..)..))).)))..)).)..))
.........1.........2.........3.........4.........5.........6.........7.........8.
123456789012345678901234567890123456789012345678901234567890123456789012345678901

abstract shape: ()

Number of sequences
Structure ORBs (out of 12) (%)
1 (.UA.().NA.)
 10 83.3
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
......................(..(.............................)..)......................
>AF480551.1/1-81
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
......................(..(............................)..).......................
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
......................(..(.............................)..)......................
>AC154660.2/77731-77651
GCGGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUGAAAUUACCUCCAGUAUUGACUGUGCUGCUGAAGUAAGGU
......................(..(............................)..).......................
>CR478286.10/109802-109722
UCCUCGCUUUAGCAGCACGUAAAUAUUGGUGUGUUAUAGUCAAGGCCAACCCCAAUAUUAUGUGUGCUGCUUCAGUAAGGC
......................(..(............................)..).......................
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
......................(..(.............................)..)......................
>AL606727.3/61372-61292
GCCUGGCUGUAGCAGCACGUAAAUAUUGGAGUCAAAGCACUUGCGAAUCCUCCAGUAUUGACCGUGCUGCUGGAGUUAGGC
......................(..(............................)..).......................
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
......................(..(.............................)..)......................
>AY866308.1/534-614
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGCUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
......................(..(............................)..).......................
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
......................(..(.............................)..)......................
2 (.UA.().NA.)
(.NA.().UR.)
 10 83.3
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
..................(...(..(.............................)..)..)...................
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
...................(..(..(.............................)..)..)...................
>AL606727.3/61372-61292
GCCUGGCUGUAGCAGCACGUAAAUAUUGGAGUCAAAGCACUUGCGAAUCCUCCAGUAUUGACCGUGCUGCUGGAGUUAGGC
...................(..(..(............................)..)...)...................
>CR478286.10/109802-109722
UCCUCGCUUUAGCAGCACGUAAAUAUUGGUGUGUUAUAGUCAAGGCCAACCCCAAUAUUAUGUGUGCUGCUUCAGUAAGGC
...................(..(..(............................)..)...)...................
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
..................(...(..(.............................)..)..)...................
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
..................(...(..(.............................)..)..)...................
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
..................(...(..(.............................)..)..)...................
>AY866308.1/534-614
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGCUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
...................(..(..(............................)..)..)....................
>AC154660.2/77731-77651
GCGGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUGAAAUUACCUCCAGUAUUGACUGUGCUGCUGAAGUAAGGU
...................(..(..(............................)..)..)....................
>AF480551.1/1-81
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
...................(..(..(............................)..)..)....................
3 (.UA.().NA.)
(.NA.().UR.)
(.GN.().NC.)
 9 75.0
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
..................(...(..(.(..(...................)..).)..)..)...................
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
..................(...(..(.(..(...................)..).)..)..)...................
>AC154660.2/77731-77651
GCGGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUGAAAUUACCUCCAGUAUUGACUGUGCUGCUGAAGUAAGGU
...................(..(..(.(..(..................)..).)..)..)....................
>AF480551.1/1-81
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
...................(..(..(.(..(..................)..).)..)..)....................
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
...................(..(..(.(..(...................)..).)..)..)...................
>AY866308.1/534-614
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGCUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
...................(..(..(.(..(..................)..).)..)..)....................
>CR478286.10/109802-109722
UCCUCGCUUUAGCAGCACGUAAAUAUUGGUGUGUUAUAGUCAAGGCCAACCCCAAUAUUAUGUGUGCUGCUUCAGUAAGGC
...................(..(..(.(..(..................)..).)..)...)...................
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
..................(...(..(.(..(...................)..).)..)..)...................
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
..................(...(..(.(..(...................)..).)..)..)...................
4 (.UA.().NA.)
(.NA.().UR.)
(.GN.().NC.)
(NU()NN)
 9 75.0
>AF480551.1/1-81
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
.......(..(........(..(..(.(..(..................)..).)..)..).........)..).......
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.......(..(.......(...(..(.(..(...................)..).)..)..)........)..).......
>CR478286.10/109802-109722
UCCUCGCUUUAGCAGCACGUAAAUAUUGGUGUGUUAUAGUCAAGGCCAACCCCAAUAUUAUGUGUGCUGCUUCAGUAAGGC
.......(..(........(..(..(.(..(..................)..).)..)...)........)..).......
>AC154660.2/77731-77651
GCGGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUGAAAUUACCUCCAGUAUUGACUGUGCUGCUGAAGUAAGGU
.......(..(........(..(..(.(..(..................)..).)..)..).........)..).......
>AY866308.1/534-614
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGCUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
.......(..(........(..(..(.(..(..................)..).)..)..).........)..).......
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.......(..(.......(...(..(.(..(...................)..).)..)..)........)..).......
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.......(..(.......(...(..(.(..(...................)..).)..)..)........)..).......
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
.......(..(........(..(..(.(..(...................)..).)..)..)........)..).......
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
.......(..(.......(...(..(.(..(...................)..).)..)..)........)..).......
5 (.UA.().NA.)
(.NA.().UR.)
(.GN.().NC.)
(NU()NN)
((G)YR)A
 9 75.0
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
.(..(..(..(.......(...(..(.(..(...................)..).)..)..)........)..)..)..).
>AY866308.1/534-614
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGCUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
...(..((..(........(..(..(.(..(..................)..).)..)..).........)..))..)...
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.......(...(..(.(..(...................)..).)..)..)........)..)..)..).
>AF480551.1/1-81
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
...(..((..(........(..(..(.(..(..................)..).)..)..).........)..))..)...
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.......(...(..(.(..(...................)..).)..)..)........)..)..)..).
>CR478286.10/109802-109722
UCCUCGCUUUAGCAGCACGUAAAUAUUGGUGUGUUAUAGUCAAGGCCAACCCCAAUAUUAUGUGUGCUGCUUCAGUAAGGC
...(..((..(........(..(..(.(..(..................)..).)..)...)........)..))..)...
>AC154660.2/77731-77651
GCGGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUGAAAUUACCUCCAGUAUUGACUGUGCUGCUGAAGUAAGGU
...(..((..(........(..(..(.(..(..................)..).)..)..).........)..))..)...
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
.(..(..(..(........(..(..(.(..(...................)..).)..)..)........)..)..)..).
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.......(...(..(.(..(...................)..).)..)..)........)..)..)..).
6 (.UA.().NA.)
(.NA.().UR.)
(.GN.().NC.)
(NU()NN)
((G)YR)A
(.NYRNR.)
 9 75.0
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.......(...(..(.(..(......(......).....)..).)..)..)........)..)..)..).
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.......(...(..(.(..(......(......).....)..).)..)..)........)..)..)..).
>AF480551.1/1-81
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
...(..((..(........(..(..(.(..(......(......)....)..).)..)..).........)..))..)...
>CR478286.10/109802-109722
UCCUCGCUUUAGCAGCACGUAAAUAUUGGUGUGUUAUAGUCAAGGCCAACCCCAAUAUUAUGUGUGCUGCUUCAGUAAGGC
...(..((..(........(..(..(.(..(......(......)....)..).)..)...)........)..))..)...
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.......(...(..(.(..(......(......).....)..).)..)..)........)..)..)..).
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
.(..(..(..(........(..(..(.(..(......(......).....)..).)..)..)........)..)..)..).
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
.(..(..(..(.......(...(..(.(..(......(......).....)..).)..)..)........)..)..)..).
>AY866308.1/534-614
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGCUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
...(..((..(........(..(..(.(..(......(......)....)..).)..)..).........)..))..)...
>AC154660.2/77731-77651
GCGGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUGAAAUUACCUCCAGUAUUGACUGUGCUGCUGAAGUAAGGU
...(..((..(........(..(..(.(..(......(......)....)..).)..)..).........)..))..)...
7 (.UA.().NA.)
(.NA.().UR.)
(.GN.().NC.)
(NU()NN)
((G)YR)A
(.NYRNR.)
Y(NR(N))
 8 66.7
>AF480551.1/1-81
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
...(..((..(........(..(..(.(..((..(..(......)..)))..).)..)..).........)..))..)...
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.......(...(..(.(..((..(..(......)..).))..).)..)..)........)..)..)..).
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.......(...(..(.(..((..(..(......)..).))..).)..)..)........)..)..)..).
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
.(..(..(..(........(..(..(.(..((..(..(......)..).))..).)..)..)........)..)..)..).
>AY866308.1/534-614
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGCUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
...(..((..(........(..(..(.(..((..(..(......)..)))..).)..)..).........)..))..)...
>AC154660.2/77731-77651
GCGGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUGAAAUUACCUCCAGUAUUGACUGUGCUGCUGAAGUAAGGU
...(..((..(........(..(..(.(..((..(..(......)..)))..).)..)..).........)..))..)...
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.......(...(..(.(..((..(..(......)..).))..).)..)..)........)..)..)..).
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
.(..(..(..(.......(...(..(.(..((..(..(......)..).))..).)..)..)........)..)..)..).
8 (.UA.().NA.)
(.NA.().UR.)
(.GN.().NC.)
(NU()NN)
((G)YR)A
(.NYRNR.)
Y(NR(N))
C(A(G))
 5 41.7
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.(.(...(...(..(.(..((..(..(......)..).))..).)..)..)....).).)..)..)..).
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
.(..(..(..(.(.(....(..(..(.(..((..(..(......)..).))..).)..)..)....).).)..)..)..).
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.(.(...(...(..(.(..((..(..(......)..).))..).)..)..)....).).)..)..)..).
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
.(..(..(..(.(.(...(...(..(.(..((..(..(......)..).))..).)..)..)....).).)..)..)..).
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.(.(...(...(..(.(..((..(..(......)..).))..).)..)..)....).).)..)..)..).
9 (.UA.().NA.)
(.NA.().UR.)
(.GN.().NC.)
(NU()NN)
((G)YR)A
(.NYRNR.)
Y(NR(N))
C(A(G))
((Y)UG)Y
 5 41.7
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
.(..(..(..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)..)..).
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)..)..).
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
.(..(..(..(.(.(.(..(..(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)..)..).
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)..)..).
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(..(..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)..)..).
10 (.UA.().NA.)
(.NA.().UR.)
(.GN.().NC.)
(NU()NN)
((G)YR)A
(.NYRNR.)
Y(NR(N))
C(A(G))
((Y)UG)Y
C(A(C))
 5 41.7
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(.((..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)).)..).
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
.(..(.((..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)).)..).
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
.(..(.((..(.(.(.(..(..(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)).)..).
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(.((..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)).)..).
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(.((..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)).)..).
11 (.UA.().NA.)
(.NA.().UR.)
(.GN.().NC.)
(NU()NN)
((G)YR)A
(.NYRNR.)
Y(NR(N))
C(A(G))
((Y)UG)Y
C(A(C))
U(G(N))
 5 41.7
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(.((..(.(.(.(.(...(..(.(..((..(.((......).)).))..).)..)..)..).).).)..)).)..).
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
.(..(.((..(.(.(.(.(...(..(.(..((..(.((......).)).))..).)..)..)..).).).)..)).)..).
>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(.((..(.(.(.(.(...(..(.(..((..(.((......).)).))..).)..)..)..).).).)..)).)..).
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
.(..(.((..(.(.(.(..(..(..(.(..((..(.((......).)).))..).)..)..)..).).).)..)).)..).
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.(..(.((..(.(.(.(.(...(..(.(..((..(.((......).)).))..).)..)..)..).).).)..)).)..).

>AY865835.1/569-649
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAUAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
......................(..(.............................)..)......................
..................(...(..(.............................)..)..)...................
..................(...(..(.(..(...................)..).)..)..)...................
.......(..(.......(...(..(.(..(...................)..).)..)..)........)..).......
.(..(..(..(.......(...(..(.(..(...................)..).)..)..)........)..)..)..).
.(..(..(..(.......(...(..(.(..(......(......).....)..).)..)..)........)..)..)..).
.(..(..(..(.......(...(..(.(..((..(..(......)..).))..).)..)..)........)..)..)..).
.(..(..(..(.(.(...(...(..(.(..((..(..(......)..).))..).)..)..)....).).)..)..)..).
.(..(..(..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)..)..).
.(..(.((..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)).)..).
.(..(.((..(.(.(.(.(...(..(.(..((..(.((......).)).))..).)..)..)..).).).)..)).)..).
>AY865836.1/531-611
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUUACUGUGCUGCUUCAGUGUGAC
......................(..(.............................)..)......................
..................(...(..(.............................)..)..)...................
..................(...(..(.(..(...................)..).)..)..)...................
.......(..(.......(...(..(.(..(...................)..).)..)..)........)..).......
.(..(..(..(.......(...(..(.(..(...................)..).)..)..)........)..)..)..).
.(..(..(..(.......(...(..(.(..(......(......).....)..).)..)..)........)..)..)..).
.(..(..(..(.......(...(..(.(..((..(..(......)..).))..).)..)..)........)..)..)..).
.(..(..(..(.(.(...(...(..(.(..((..(..(......)..).))..).)..)..)....).).)..)..)..).
.(..(..(..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)..)..).
.(..(.((..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)).)..).
.(..(.((..(.(.(.(.(...(..(.(..((..(.((......).)).))..).)..)..)..).).).)..)).)..).
>AC119847.12/19552-19632
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGAC
......................(..(.............................)..)......................
...................(..(..(.............................)..)..)...................
...................(..(..(.(..(...................)..).)..)..)...................
.......(..(........(..(..(.(..(...................)..).)..)..)........)..).......
.(..(..(..(........(..(..(.(..(...................)..).)..)..)........)..)..)..).
.(..(..(..(........(..(..(.(..(......(......).....)..).)..)..)........)..)..)..).
.(..(..(..(........(..(..(.(..((..(..(......)..).))..).)..)..)........)..)..)..).
.(..(..(..(.(.(....(..(..(.(..((..(..(......)..).))..).)..)..)....).).)..)..)..).
.(..(..(..(.(.(.(..(..(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)..)..).
.(..(.((..(.(.(.(..(..(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)).)..).
.(..(.((..(.(.(.(..(..(..(.(..((..(.((......).)).))..).)..)..)..).).).)..)).)..).
>AY865833.1/553-633
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
......................(..(.............................)..)......................
..................(...(..(.............................)..)..)...................
..................(...(..(.(..(...................)..).)..)..)...................
.......(..(.......(...(..(.(..(...................)..).)..)..)........)..).......
.(..(..(..(.......(...(..(.(..(...................)..).)..)..)........)..)..)..).
.(..(..(..(.......(...(..(.(..(......(......).....)..).)..)..)........)..)..)..).
.(..(..(..(.......(...(..(.(..((..(..(......)..).))..).)..)..)........)..)..)..).
.(..(..(..(.(.(...(...(..(.(..((..(..(......)..).))..).)..)..)....).).)..)..)..).
.(..(..(..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)..)..).
.(..(.((..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)).)..).
.(..(.((..(.(.(.(.(...(..(.(..((..(.((......).)).))..).)..)..)..).).).)..)).)..).
>AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
......................(..(.............................)..)......................
..................(...(..(.............................)..)..)...................
..................(...(..(.(..(...................)..).)..)..)...................
.......(..(.......(...(..(.(..(...................)..).)..)..)........)..).......
.(..(..(..(.......(...(..(.(..(...................)..).)..)..)........)..)..)..).
.(..(..(..(.......(...(..(.(..(......(......).....)..).)..)..)........)..)..)..).
.(..(..(..(.......(...(..(.(..((..(..(......)..).))..).)..)..)........)..)..)..).
.(..(..(..(.(.(...(...(..(.(..((..(..(......)..).))..).)..)..)....).).)..)..)..).
.(..(..(..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)..)..).
.(..(.((..(.(.(.(.(...(..(.(..((..(..(......)..).))..).)..)..)..).).).)..)).)..).
.(..(.((..(.(.(.(.(...(..(.(..((..(.((......).)).))..).)..)..)..).).).)..)).)..).
>AF480551.1/1-81
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
......................(..(............................)..).......................
...................(..(..(............................)..)..)....................
...................(..(..(.(..(..................)..).)..)..)....................
.......(..(........(..(..(.(..(..................)..).)..)..).........)..).......
...(..((..(........(..(..(.(..(..................)..).)..)..).........)..))..)...
...(..((..(........(..(..(.(..(......(......)....)..).)..)..).........)..))..)...
...(..((..(........(..(..(.(..((..(..(......)..)))..).)..)..).........)..))..)...
>AC154660.2/77731-77651
GCGGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUGAAAUUACCUCCAGUAUUGACUGUGCUGCUGAAGUAAGGU
......................(..(............................)..).......................
...................(..(..(............................)..)..)....................
...................(..(..(.(..(..................)..).)..)..)....................
.......(..(........(..(..(.(..(..................)..).)..)..).........)..).......
...(..((..(........(..(..(.(..(..................)..).)..)..).........)..))..)...
...(..((..(........(..(..(.(..(......(......)....)..).)..)..).........)..))..)...
...(..((..(........(..(..(.(..((..(..(......)..)))..).)..)..).........)..))..)...
>AY866308.1/534-614
GCAGUGCCUUAGCAGCACGUAAAUAUUGGCGCUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGU
......................(..(............................)..).......................
...................(..(..(............................)..)..)....................
...................(..(..(.(..(..................)..).)..)..)....................
.......(..(........(..(..(.(..(..................)..).)..)..).........)..).......
...(..((..(........(..(..(.(..(..................)..).)..)..).........)..))..)...
...(..((..(........(..(..(.(..(......(......)....)..).)..)..).........)..))..)...
...(..((..(........(..(..(.(..((..(..(......)..)))..).)..)..).........)..))..)...
>CR478286.10/109802-109722
UCCUCGCUUUAGCAGCACGUAAAUAUUGGUGUGUUAUAGUCAAGGCCAACCCCAAUAUUAUGUGUGCUGCUUCAGUAAGGC
......................(..(............................)..).......................
...................(..(..(............................)..)...)...................
...................(..(..(.(..(..................)..).)..)...)...................
.......(..(........(..(..(.(..(..................)..).)..)...)........)..).......
...(..((..(........(..(..(.(..(..................)..).)..)...)........)..))..)...
...(..((..(........(..(..(.(..(......(......)....)..).)..)...)........)..))..)...
>AL606727.3/61372-61292
GCCUGGCUGUAGCAGCACGUAAAUAUUGGAGUCAAAGCACUUGCGAAUCCUCCAGUAUUGACCGUGCUGCUGGAGUUAGGC
......................(..(............................)..).......................
...................(..(..(............................)..)...)...................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (.UA.().NA.) < 0.001 8.47
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
123456789012345678901234567890123456789012345678901234567890123456789012345678901
2 (.NA.().UR.) < 0.001 4.08
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
123456789012345678901234567890123456789012345678901234567890123456789012345678901
3 (.GN.().NC.) < 0.001 5
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
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4 (NU()NN) < 0.001 17.4
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
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5 ((G)YR)A < 0.001 2.61
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
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6 ((Y)UG)Y < 0.001 3.62
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
123456789012345678901234567890123456789012345678901234567890123456789012345678901
7 C(A(C)) < 0.001 1.12
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
123456789012345678901234567890123456789012345678901234567890123456789012345678901
8 U(G(N)) < 0.001 1.4
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
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9 (.NYRNR.) < 0.001 2.03
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
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10 C(A(G)) < 0.001 1.4
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
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11 Y(NR(N)) 0.0043 1.05
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
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ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 (.UA.().NA.) < 0.001 8.47
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
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2 ((C)NC)C < 0.001 1.09
AF480552.1/1-81
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUUACUGUGCUGCUUUAGUGUGAC
.........1.........2.........3.........4.........5.........6.........7.........8.
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3 C(NNY)N (URB) < 0.001 0
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).