D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Glycine riboswitch   (Rfam: RF00504)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
C(GAN)G
R(G(R)())
G(N(N)()())
90.9
90.9
95.5

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 97.5 %
(± 0.163 %)
Decision tree:

5-fold cross-validation: 85.6 %
(± 3.54 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 85.6 %
(± 3.54 %)
of AL596168.1/161626-161717
AL596168.1/161626-161717
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
(.(((((((((((.((((.(((((...)))))((((...)))).(((((((...)))))))..))))((((...)))).)))))))))))).
.........1.........2.........3.........4.........5.........6.........7.........8.........9..
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012

abstract shape: ((()()())())

Number of sequences
Structure ORBs (out of 44) (%)
1 C(GAN)G
 40 90.9
>AL939123.1/278145-278052
UGAAUCCGCGCGGGAGAGUCCCCGGCCGCGCCGGGGCGCCGAAGGAGCAAGUCCCUCCCUUGAAUCUCUCAGGCACCGUUACCGCGCGGGCGAG
.......................................(...)..................................................
>AE017355.1/2242861-2242742
GGACGAAUCUCUGGAGAGACUCCCUCUCGCUUUAAAUAGCGUAGAGGAAAACGAGCACCGAAGGAGCAAAUCCGCUACUAUAGCGGAUAAUCUCUCAGGUAAAAGGACAGAGACAAGCGA
..........................................................(...).........................................................
>AE008923.1/1392465-1392356
CAACUCUGGAGAGACCGGCCGAUGCCGGCGCCGAAGGGGCACGAAACGCAGGCAGGCCACGCGCCAGGCCGCGUUUUUAAACUCUCAGGCAAAAGGACAGAGGGGCGCGA
...............................(...)..........................................................................
>BX897699.1/1435871-1435783
CAGAUCUGGAAAGUCGGGAGGGGCCGCGCCGAAGGUGUAAGCGAAAACUUUUUUCGCGAGUCUCUCAGGUUUGUAACAGAGGGGUGCAG
.............................(...).......................................................
>BX897699.1/1435970-1435876
UUUUGCGGGAGAGUGCAGGCUGCAAGUUUUUGGGUCUGCCGCCGAAGGGGAAAAUAGCCCGUAAUCUCUCAGGCUCUAAGGACCGUAAAAGAAGA
..........................................(...)................................................
>CP000262.1/1070832-1070913
UGAUGUCAUGCAGGAGAAGAAUUUAUUUUCGCCGAAGGAGUUAUACUCUCAGGUGUUCAGUUUUUGAACGGGACUGUUUGAU
................................(...).............................................
>AE008691.1/1826306-1826220
AUAUCCCGGAAAGCCUCUAAAGAGGCACCGAAGGAGCAAUUCUUCUAUAAAGAAGAAUCUCUCAGGUAAACAGACGGGGGAAUAAAA
............................(...)......................................................
>AJ301559.2/6784-6876
CGCCUGCGCGGGAGAGUUCCGAGGCAUCCAGUCUCGGACGCCGAAGGAGCAAUACCUCCCCGUCAAUCUCUCAGGCACACGGACGCGUGUGGG
.........................................(...)...............................................
>AE016822.1/1714518-1714420
GAGGCCGAUGCGGGAGAGCUGCGGGGGAGAACCCGCCCGCGGCACCGAAGGAGCAAUCCUCCCCGACAAUCUCUCAGGUACGCGUACCGCAUCGGACUG
.............................................(...).................................................
>AL596168.1/161626-161717
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
...................................(...)....................................................
>BX640439.1/206443-206535
ACGCAUGUCGCGGGAGAGAGCGGCCGAUUGCGGCUGCCGCCGAAGGCGCAAUUCGCCCGGAAUCGCUCAGGUAACCCAUACCGCGACUGCAUC
........................................(...)................................................
>CR522870.1/1448704-1448793
AGCCUCUGGAGAGUCUCAUUAUGGGCACCGAAGGAGCAAGCCAGCGUGUAGCUGGUGAACCUCUCAGGUACAAGGGACAGAGUGUAGCAG
............................(...).........................................................
>AE008691.1/1826408-1826312
AUGAAGAAUGCGGGAGAGACCCUAACCGGGCGCCGAAGGAGCAAGCGGGUAUAUGGCCUGUAUACUCGUGAAACUCUCAGGCAAAAGGACCGCAUUC
.................................(...)...........................................................
>BX640445.1/160210-160126
ACGUGCAGUUCGGGAGAGACCGUCCAGCGGACGGCGCCGACGGAGCAACCACCCCGGAAACUCUCAGGCAAAAGGACCGACCUGC
.....................................(...)...........................................
>AL939108.1/255539-255444
UGACCCCGCGCGGGAGAGUCCUCCGGACAUCACCGGAGGCGCCGAAGGAGCAAAUCCUCCCCGGAAUCUCUCAGGCUCACGUACCGCACGGACGAG
..........................................(...).................................................
>AL591978.1/212840-212931
GUGAAUGUAAGCAGAGAGACUGCGAAAAGCAGCGCCGACGGGGAAAGCAUAUAUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
...................................(...)....................................................
>CR378670.1/15794-15904
AGCCUCUGGAGAGACCCGUUAAAUCGGGCGCCGAAGGAGCAAGCUUUCCUUUUUGCUGUUUUAACAUGCAUGGAAAGUGAAACUCUCAGGCAAAAGGACAGAGGAGAUAAG
...............................(...)...........................................................................
>BX572605.1/160670-160756
CUAAGUCGCGUCGGGAGAGAUCGGCCGCAAGGCCGGCGCCGAAGGAGCAACCGCCCCGGAAACUCUCAGGCAAACGGACCGCGCGGC
.......................................(...)...........................................
>AL591688.1/1674990-1674906
CGACCUCGUUGGGAGAAACCGGUUCGAUCCGGUGCCGAAGGAGCAACCGCCCCGGAAACUCUCAGGCCAAAGGACCAGCAAGGUG
...................................(...).............................................
>AE017355.1/2242962-2242862
AUGAACCAUUCAGGAGAAGGUCUAUUGAUCUACCGACGGGGCAAAAAGUUGUUAACCGACUUUGAAACUCUCAGGUCUUGUUUACAAGUAGAACUGCAUGG
.................................(...)...............................................................
>BX640445.1/160122-160016
AACAUCUGGAGAGUGGCGCGCGGUACGGCGCCCACCGAAGGGGAUCCCUGGCGCGUUUGCAGCGGCGCACGGGUGAAGCUCUCAGGUAAAUGGACAGAUGGGGUUGC
...................................(...)...................................................................
>CR543861.1/1990073-1989965
AUAAUCUGGAGAGAAGUAUUUCAAAAAUACUCACCGAAGGGGAUGGUACGUAGAUUUAUGGAAAUCUAUAGCUACCGAAGCUCUCAGGUACCCUGACAGAUGGGGCAAC
..................................(...)......................................................................
>CP000919.1/381215-381303
GGACGGAACUCUGGAGAGACCGUAAAGGCACCGAAGGGGCAAGGCAGGCAACUGCUCAAACUCUCAGGUAAAAGGACAGAGCUAGGAUA
...............................(...).....................................................
>CR543861.1/1990167-1990077
AUGAUUAUUGCAGGAGAGAUAUUCUUGCAAAGGAUACGCCGAAGGAGCAACGACCCCGGAAACUCUCAGGCAGAAGGACUGUAAUAAUCGA
.......................................(...)...............................................
>AL939123.1/278050-277936
CACAUCUGAAAAGCGGACCGCCCCCGACGGCGGUCCCACCCAAGGUGCAAGCCCUGAUCGCCGUACUCCGGUGGCCGUGGCGAACCUCUCAGGUUCCGAUGACAGAUGGGGAGGA
........................(...)......................................................................................
>AL939108.1/255442-255325
UCACUCUGGAAAGCAGGGCGGGUGUCGACGGCUUCCGCUCUCACCGACGGUGAAAGCCGGGCAGAGCUCCAGGGCUCGCCCGGUGAAGCUCUCAGGUUGAGAUGACAGAGGGGGAGGC
............................................(...).....................................................................
>AE008922.1/1299977-1299896
GUAACACGGUGGGAGAAGCGGCACUGCCGCUGCCGAAGGCGCAACAGCCCGUAAUCGCUCAGGCCCGAUACCAUCUUCAACA
.................................(...)............................................
>D84432.1/169999-170100
AUGACAGCAAGGGGAGAGACCUGACCGAAAACCUCGGGAUACAGGCGCCGAAGGAGCAAACUGCGGAGUGAAUCUCUCAGGCAAAAGAACUCUUGCUCGACG
................................................(...).................................................
>BX950851.1/2645129-2645034
UUGAAGCCAACUGGAGAGAGGUUGCGAUGCAACCCACCGAAGGGGCAAGCAGCUCUGCUGCGUAAACUCUCAGGUAAAGCGGACAGAGGGAGUGGC
........................(...)...................................................................
>BX572605.1/160757-160849
CGACUGACAUCUGGAAAGAGACCCUGCCGGGCGAUCCCGGGACGGGUCCGCCGACGGGAUAAUGCUCUCAGGCACAGCGACAGAUGGGGCUCG
...................................................(...).....................................
>BX950851.1/2645260-2645133
CCGCUCCUCGCAGGAGAGAGGGCGUGUACUCCAGCAUACUUCAAGCUACAUGUACGUUGGCAUAAAGUAUAACGCUCCGCCGAAGGCGCAAACUCCCAUAAUCGCUCAGGCUACCCUAACUGCGAAUU
................................................................................(...)...........................................
>BX842572.1/79202-79095
CAACUCUGGAGACAGGGACGGUCGCACCGACCGUGCCUGACCGAAGGUGUAGAGCGGCGCCAUGAUGCGACGCCGCAGACUCUCAGGUUUCAGGACAGAGCGGGGAGG
.........................................(...)..............................................................
>AL766849.1/65640-65772
AGACGGACUUCUGGAGAGACCUAUAAGUAGCAACAUCUUUGUAUUGACACCAAGAUGUGCUCUAGGCGCCGAAGGGGCAAGAAGAGUAAAACAACUCCUCCAAUCUCUCAGGCAAAAGGACAGAAGCUAAAAG
.....................................................................(...)...........................................................
>AJ312125.1/453-315
AGACGAUACUCUGGAGAGACCAUAUAAGGCACCGAAGGAGCAAAUUUAAUUGAGAUCUUUAUAUAAAUAAAAAAGCUCAUCCCUUUUUUAGAUCAAGCGAUUAAAUGAAUCUCUCAGGUAAAAGGACAGAGAACUGAAU
................................(...)......................................................................................................
>AE014292.2/713320-713218
UAAGACAACUCUGGAAAGUCGGGGGCAACUCCGCGCCGAAGGUGUAAGUAUGGCUUUAUAUAUAGCCAUGCGAGUCUCUCAGGCCUGAGACAGAGGGGCACGA
....................................(...)..............................................................
>AE004439.1/116056-116172
AACCCUUGGAGAGAGCCGUUAUAUUAAAAAGAGAUAAAACGGCCGCCGAAGGCGCAAAAAGAGCGGUUAAUUUUUCCGUUUUUUCAAACGCUCAGGCAAAAGGACAGGGGCAACAAG
..............................................(...)..................................................................
>BX842577.1/344356-344453
CGCUCUAGUGCGGGAGAGUUCUGUGGCUGCCAGCUACGGACGCCGAAGGAGCAAUACCUCUCCGUCAACCUCUCAGGCACCCGGACCGCGCGAGACUA
...........................................(...)..................................................
>AJ312125.1/523-454
AUGAAGGUGGCAGGAGAGACCCAUGAGGGGCGCCGAAGAAGUAAAGCUUUCAGGCUUAGGACUGUCAUCA
.................................(...)................................
>AE008691.1/313165-313055
AUGAAGAUAGCGAGAGAUUAUCUUCCAUAAAUGGAAGAUAGCCGAAGGGGAAAUACAAAGGCCCGCCAAGCCUUUGUAGAAGCUCUCAGGCGGCAGGAUCGCUAUCGGAUA
..........................................(...)................................................................
>AL766849.1/65560-65639
UGACGUCAUUCAGGAGAAGAAAGUUAGACUUUCGCCGAAGGAAUUACACUCUCAGGUGUCUUAAGACAGGACUGAUUGAC
...................................(...)........................................
2 C(GAN)G
R(G(R)())
 34 77.3
>AL939108.1/255539-255444
UGACCCCGCGCGGGAGAGUCCUCCGGACAUCACCGGAGGCGCCGAAGGAGCAAAUCCUCCCCGGAAUCUCUCAGGCUCACGUACCGCACGGACGAG
...........(.(............................(...)......................)(...........))............
>AL596168.1/161626-161717
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
............(.(....................(...)..........................)(.........).)............
>D84432.1/169999-170100
AUGACAGCAAGGGGAGAGACCUGACCGAAAACCUCGGGAUACAGGCGCCGAAGGAGCAAACUGCGGAGUGAAUCUCUCAGGCAAAAGAACUCUUGCUCGACG
............(.(.................................(...).........................)(........))............
>AE008691.1/1826306-1826220
AUAUCCCGGAAAGCCUCUAAAGAGGCACCGAAGGAGCAAUUCUUCUAUAAAGAAGAAUCUCUCAGGUAAACAGACGGGGGAAUAAAA
.......(.(..................(...)..........................).(...........))............
>CR543861.1/1990073-1989965
AUAAUCUGGAGAGAAGUAUUUCAAAAAUACUCACCGAAGGGGAUGGUACGUAGAUUUAUGGAAAUCUAUAGCUACCGAAGCUCUCAGGUACCCUGACAGAUGGGGCAAC
.......(.(........................(...)............................................)(.........).)............
>AL939123.1/278145-278052
UGAAUCCGCGCGGGAGAGUCCCCGGCCGCGCCGGGGCGCCGAAGGAGCAAGUCCCUCCCUUGAAUCUCUCAGGCACCGUUACCGCGCGGGCGAG
............(.(........................(...)........................).(.........))............
>AL939108.1/255442-255325
UCACUCUGGAAAGCAGGGCGGGUGUCGACGGCUUCCGCUCUCACCGACGGUGAAAGCCGGGCAGAGCUCCAGGGCUCGCCCGGUGAAGCUCUCAGGUUGAGAUGACAGAGGGGGAGGC
.......(.(..................................(...).........................................)(............))............
>AL591688.1/1674990-1674906
CGACCUCGUUGGGAGAAACCGGUUCGAUCCGGUGCCGAAGGAGCAACCGCCCCGGAAACUCUCAGGCCAAAGGACCAGCAAGGUG
..........(.(......................(...)......................).(.........)).........
>BX640445.1/160122-160016
AACAUCUGGAGAGUGGCGCGCGGUACGGCGCCCACCGAAGGGGAUCCCUGGCGCGUUUGCAGCGGCGCACGGGUGAAGCUCUCAGGUAAAUGGACAGAUGGGGUUGC
.......(.(.........................(...).........................................)(........)..)............
>BX897699.1/1435970-1435876
UUUUGCGGGAGAGUGCAGGCUGCAAGUUUUUGGGUCUGCCGCCGAAGGGGAAAAUAGCCCGUAAUCUCUCAGGCUCUAAGGACCGUAAAAGAAGA
.......(.(................................(...)...................)(...........)..)............
>BX572605.1/160757-160849
CGACUGACAUCUGGAAAGAGACCCUGCCGGGCGAUCCCGGGACGGGUCCGCCGACGGGAUAAUGCUCUCAGGCACAGCGACAGAUGGGGCUCG
............(.(....................................(...).............)(.......).)............
>BX640445.1/160210-160126
ACGUGCAGUUCGGGAGAGACCGUCCAGCGGACGGCGCCGACGGAGCAACCACCCCGGAAACUCUCAGGCAAAAGGACCGACCUGC
............(.(......................(...).......................)(........))........
>AE014292.2/713320-713218
UAAGACAACUCUGGAAAGUCGGGGGCAACUCCGCGCCGAAGGUGUAAGUAUGGCUUUAUAUAUAGCCAUGCGAGUCUCUCAGGCCUGAGACAGAGGGGCACGA
............(.(.....................(...).................................).(............))............
>BX950851.1/2645129-2645034
UUGAAGCCAACUGGAGAGAGGUUGCGAUGCAACCCACCGAAGGGGCAAGCAGCUCUGCUGCGUAAACUCUCAGGUAAAGCGGACAGAGGGAGUGGC
............(.(.........(...)......................................).(............))............
>AJ312125.1/523-454
AUGAAGGUGGCAGGAGAGACCCAUGAGGGGCGCCGAAGAAGUAAAGCUUUCAGGCUUAGGACUGUCAUCA
....(.(..........................(...)..................)(....))......
>BX897699.1/1435871-1435783
CAGAUCUGGAAAGUCGGGAGGGGCCGCGCCGAAGGUGUAAGCGAAAACUUUUUUCGCGAGUCUCUCAGGUUUGUAACAGAGGGGUGCAG
.......(.(...................(...)..........................)..(................)).......
>AE004439.1/116056-116172
AACCCUUGGAGAGAGCCGUUAUAUUAAAAAGAGAUAAAACGGCCGCCGAAGGCGCAAAAAGAGCGGUUAAUUUUUCCGUUUUUUCAAACGCUCAGGCAAAAGGACAGGGGCAACAAG
.......(.(....................................(...)..........................................)(................).)...
>CP000262.1/1070832-1070913
UGAUGUCAUGCAGGAGAAGAAUUUAUUUUCGCCGAAGGAGUUAUACUCUCAGGUGUUCAGUUUUUGAACGGGACUGUUUGAU
..............(.(...............(...)...................)(............))..........
>BX842577.1/344356-344453
CGCUCUAGUGCGGGAGAGUUCUGUGGCUGCCAGCUACGGACGCCGAAGGAGCAAUACCUCUCCGUCAACCUCUCAGGCACCCGGACCGCGCGAGACUA
............(.(............................(...)........................)(.........).)............
>BX640439.1/206443-206535
ACGCAUGUCGCGGGAGAGAGCGGCCGAUUGCGGCUGCCGCCGAAGGCGCAAUUCGCCCGGAAUCGCUCAGGUAACCCAUACCGCGACUGCAUC
..............(.(.......................(...).......................)(.......))..............
>AJ301559.2/6784-6876
CGCCUGCGCGGGAGAGUUCCGAGGCAUCCAGUCUCGGACGCCGAAGGAGCAAUACCUCCCCGUCAAUCUCUCAGGCACACGGACGCGUGUGGG
..........(.(............................(...)........................)(.........))..........
>CR522870.1/1448704-1448793
AGCCUCUGGAGAGUCUCAUUAUGGGCACCGAAGGAGCAAGCCAGCGUGUAGCUGGUGAACCUCUCAGGUACAAGGGACAGAGUGUAGCAG
.......(.(..................(...)............................)(............).)............
>CR543861.1/1990167-1990077
AUGAUUAUUGCAGGAGAGAUAUUCUUGCAAAGGAUACGCCGAAGGAGCAACGACCCCGGAAACUCUCAGGCAGAAGGACUGUAAUAAUCGA
...........(.(.........................(...)......................).(.........))...........
>AE008923.1/1392465-1392356
CAACUCUGGAGAGACCGGCCGAUGCCGGCGCCGAAGGGGCACGAAACGCAGGCAGGCCACGCGCCAGGCCGCGUUUUUAAACUCUCAGGCAAAAGGACAGAGGGGCGCGA
.......(.(.....................(...)................................................)(.........).)............
>CR378670.1/15794-15904
AGCCUCUGGAGAGACCCGUUAAAUCGGGCGCCGAAGGAGCAAGCUUUCCUUUUUGCUGUUUUAACAUGCAUGGAAAGUGAAACUCUCAGGCAAAAGGACAGAGGAGAUAAG
.........(.(...................(...).................................................)(........))..............
>AE008922.1/1299977-1299896
GUAACACGGUGGGAGAAGCGGCACUGCCGCUGCCGAAGGCGCAACAGCCCGUAAUCGCUCAGGCCCGAUACCAUCUUCAACA
...........(.(...................(...)......................)(......).)...........
>AL591978.1/212840-212931
GUGAAUGUAAGCAGAGAGACUGCGAAAAGCAGCGCCGACGGGGAAAGCAUAUAUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
............(.(....................(...)..........................)(.........).)............
>AE008691.1/1826408-1826312
AUGAAGAAUGCGGGAGAGACCCUAACCGGGCGCCGAAGGAGCAAGCGGGUAUAUGGCCUGUAUACUCGUGAAACUCUCAGGCAAAAGGACCGCAUUC
............(.(..................(...)....................................).(...........)).......
>AE016822.1/1714518-1714420
GAGGCCGAUGCGGGAGAGCUGCGGGGGAGAACCCGCCCGCGGCACCGAAGGAGCAAUCCUCCCCGACAAUCUCUCAGGUACGCGUACCGCAUCGGACUG
...........(.(...............................(...)........................).(.........))...........
>AE017355.1/2242962-2242862
AUGAACCAUUCAGGAGAAGGUCUAUUGAUCUACCGACGGGGCAAAAAGUUGUUAACCGACUUUGAAACUCUCAGGUCUUGUUUACAAGUAGAACUGCAUGG
...........(.(...................(...).................................)...(............))...........
>BX842572.1/79202-79095
CAACUCUGGAGACAGGGACGGUCGCACCGACCGUGCCUGACCGAAGGUGUAGAGCGGCGCCAUGAUGCGACGCCGCAGACUCUCAGGUUUCAGGACAGAGCGGGGAGG
.......(.(...............................(...)....................................)..(..........)...).......
>AL766849.1/65560-65639
UGACGUCAUUCAGGAGAAGAAAGUUAGACUUUCGCCGAAGGAAUUACACUCUCAGGUGUCUUAAGACAGGACUGAUUGAC
...........(.(.....................(...).....................)..(......)).......
>CP000919.1/381215-381303
GGACGGAACUCUGGAGAGACCGUAAAGGCACCGAAGGGGCAAGGCAGGCAACUGCUCAAACUCUCAGGUAAAAGGACAGAGCUAGGAUA
............(.(................(...)...........................)(.........).)............
>BX572605.1/160670-160756
CUAAGUCGCGUCGGGAGAGAUCGGCCGCAAGGCCGGCGCCGAAGGAGCAACCGCCCCGGAAACUCUCAGGCAAACGGACCGCGCGGC
.............(.(.......................(...).......................)(........))........
3 C(GAN)G
R(G(R)())
G(N(N)()())
 25 56.8
>BX572605.1/160670-160756
CUAAGUCGCGUCGGGAGAGAUCGGCCGCAAGGCCGGCGCCGAAGGAGCAACCGCCCCGGAAACUCUCAGGCAAACGGACCGCGCGGC
.............(.(..(.(..............)(..(...)..)(.............))....)(........))........
>AL591688.1/1674990-1674906
CGACCUCGUUGGGAGAAACCGGUUCGAUCCGGUGCCGAAGGAGCAACCGCCCCGGAAACUCUCAGGCCAAAGGACCAGCAAGGUG
..........(.(.(.(...............)(.(...).)(...............).).).(.........)).........
>CR543861.1/1990167-1990077
AUGAUUAUUGCAGGAGAGAUAUUCUUGCAAAGGAUACGCCGAAGGAGCAACGACCCCGGAAACUCUCAGGCAGAAGGACUGUAAUAAUCGA
...........(.(...(.(...............)(..(...)..)(.............))...).(.........))...........
>AE016822.1/1714518-1714420
GAGGCCGAUGCGGGAGAGCUGCGGGGGAGAACCCGCCCGCGGCACCGAAGGAGCAAUCCUCCCCGACAAUCUCUCAGGUACGCGUACCGCAUCGGACUG
...........(.(...(.(....................)(...(...)...)(..............))...)..(........))...........
>D84432.1/169999-170100
AUGACAGCAAGGGGAGAGACCUGACCGAAAACCUCGGGAUACAGGCGCCGAAGGAGCAAACUGCGGAGUGAAUCUCUCAGGCAAAAGAACUCUUGCUCGACG
............(.(.......(.(..................)(...(...)...)(............))......)(........))............
>AJ312125.1/523-454
AUGAAGGUGGCAGGAGAGACCCAUGAGGGGCGCCGAAGAAGUAAAGCUUUCAGGCUUAGGACUGUCAUCA
....(.(........(.(............)(.(...))(.......)).......)(....))......
>CP000262.1/1070832-1070913
UGAUGUCAUGCAGGAGAAGAAUUUAUUUUCGCCGAAGGAGUUAUACUCUCAGGUGUUCAGUUUUUGAACGGGACUGUUUGAU
...........(.(.(.(............)((...))(.......)).)....(..................)).......
>BX640439.1/206443-206535
ACGCAUGUCGCGGGAGAGAGCGGCCGAUUGCGGCUGCCGCCGAAGGCGCAAUUCGCCCGGAAUCGCUCAGGUAACCCAUACCGCGACUGCAUC
..............(.((.(................)(..(...)..)(...............))..)(.......))..............
>AE008691.1/1826306-1826220
AUAUCCCGGAAAGCCUCUAAAGAGGCACCGAAGGAGCAAUUCUUCUAUAAAGAAGAAUCUCUCAGGUAAACAGACGGGGGAAUAAAA
.......(.(..(.(........)(...(...)...)..(................).)).(...........))............
>AL939108.1/255442-255325
UCACUCUGGAAAGCAGGGCGGGUGUCGACGGCUUCCGCUCUCACCGACGGUGAAAGCCGGGCAGAGCUCCAGGGCUCGCCCGGUGAAGCUCUCAGGUUGAGAUGACAGAGGGGGAGGC
.......(.(.....(.(...................)(.....(...).....)(...........................).)....)(............))............
>AL939108.1/255539-255444
UGACCCCGCGCGGGAGAGUCCUCCGGACAUCACCGGAGGCGCCGAAGGAGCAAAUCCUCCCCGGAAUCUCUCAGGCUCACGUACCGCACGGACGAG
...........(.(...(.(.................)(...(...)...).(.............)).)(...........))............
>CR543861.1/1990073-1989965
AUAAUCUGGAGAGAAGUAUUUCAAAAAUACUCACCGAAGGGGAUGGUACGUAGAUUUAUGGAAAUCUAUAGCUACCGAAGCUCUCAGGUACCCUGACAGAUGGGGCAAC
.......(.(..(.(...............)(..(...)..)..(..............................)..)....)(.........).)............
>AL596168.1/161626-161717
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
............(.(..(.(...........)(..(...)..).(...............)..)..)(.........).)............
>AJ301559.2/6784-6876
CGCCUGCGCGGGAGAGUUCCGAGGCAUCCAGUCUCGGACGCCGAAGGAGCAAUACCUCCCCGUCAAUCUCUCAGGCACACGGACGCGUGUGGG
..........(.(..(.(...................)(..(...)..).(...............))..)(.........))..........
>AE017355.1/2242962-2242862
AUGAACCAUUCAGGAGAAGGUCUAUUGAUCUACCGACGGGGCAAAAAGUUGUUAACCGACUUUGAAACUCUCAGGUCUUGUUUACAAGUAGAACUGCAUGG
...........(.(.(.(............)(.(...)..)..(...................)...)...)...(............))...........
>BX640445.1/160210-160126
ACGUGCAGUUCGGGAGAGACCGUCCAGCGGACGGCGCCGACGGAGCAACCACCCCGGAAACUCUCAGGCAAAAGGACCGACCUGC
............(.(..(.(.............)(..(...)..)(.............))....)(........))........
>AE008922.1/1299977-1299896
GUAACACGGUGGGAGAAGCGGCACUGCCGCUGCCGAAGGCGCAACAGCCCGUAAUCGCUCAGGCCCGAUACCAUCUUCAACA
...........(.((.(.............)(.(...).).(..............))..)(......).)...........
>CR522870.1/1448704-1448793
AGCCUCUGGAGAGUCUCAUUAUGGGCACCGAAGGAGCAAGCCAGCGUGUAGCUGGUGAACCUCUCAGGUACAAGGGACAGAGUGUAGCAG
.......(.(..(.(.........)(..(...)..)(...................))..)(..............))............
>AL591978.1/212840-212931
GUGAAUGUAAGCAGAGAGACUGCGAAAAGCAGCGCCGACGGGGAAAGCAUAUAUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
............(.(..(.(...........)(..(...)..).(...............)..)..)(.........).)............
>AL766849.1/65560-65639
UGACGUCAUUCAGGAGAAGAAAGUUAGACUUUCGCCGAAGGAAUUACACUCUCAGGUGUCUUAAGACAGGACUGAUUGAC
...........(.(.(.(...............)((...))(........))).(................)).......
>CP000919.1/381215-381303
GGACGGAACUCUGGAGAGACCGUAAAGGCACCGAAGGGGCAAGGCAGGCAACUGCUCAAACUCUCAGGUAAAAGGACAGAGCUAGGAUA
............(.((.(..........)(.(...)..).(................)..)..)(.........).)............
>AE008691.1/1826408-1826312
AUGAAGAAUGCGGGAGAGACCCUAACCGGGCGCCGAAGGAGCAAGCGGGUAUAUGGCCUGUAUACUCGUGAAACUCUCAGGCAAAAGGACCGCAUUC
............(.(..(.(........)(...(...)...)..(.......................)..)..).(...........)).......
>AL939123.1/278145-278052
UGAAUCCGCGCGGGAGAGUCCCCGGCCGCGCCGGGGCGCCGAAGGAGCAAGUCCCUCCCUUGAAUCUCUCAGGCACCGUUACCGCGCGGGCGAG
............(.(..(.(...............)(..(...)..)..(..............))..).(.........))............
>AE014292.2/713320-713218
UAAGACAACUCUGGAAAGUCGGGGGCAACUCCGCGCCGAAGGUGUAAGUAUGGCUUUAUAUAUAGCCAUGCGAGUCUCUCAGGCCUGAGACAGAGGGGCACGA
............(.(..(.(............)(..(...)..)....(....................))...).(............))............
>BX640445.1/160122-160016
AACAUCUGGAGAGUGGCGCGCGGUACGGCGCCCACCGAAGGGGAUCCCUGGCGCGUUUGCAGCGGCGCACGGGUGAAGCUCUCAGGUAAAUGGACAGAUGGGGUUGC
.......(.(.....(.(............)(...(...)...)(............................).).....)(........)..)............

>AL939123.1/278145-278052
UGAAUCCGCGCGGGAGAGUCCCCGGCCGCGCCGGGGCGCCGAAGGAGCAAGUCCCUCCCUUGAAUCUCUCAGGCACCGUUACCGCGCGGGCGAG
.......................................(...)..................................................
............(.(........................(...)........................).(.........))............
............(.(..(.(...............)(..(...)..)..(..............))..).(.........))............
>CP000262.1/1070832-1070913
UGAUGUCAUGCAGGAGAAGAAUUUAUUUUCGCCGAAGGAGUUAUACUCUCAGGUGUUCAGUUUUUGAACGGGACUGUUUGAU
................................(...).............................................
..............(.(...............(...)...................)(............))..........
...........(.(.(.(............)((...))(.......)).)....(..................)).......
>AE008691.1/1826306-1826220
AUAUCCCGGAAAGCCUCUAAAGAGGCACCGAAGGAGCAAUUCUUCUAUAAAGAAGAAUCUCUCAGGUAAACAGACGGGGGAAUAAAA
............................(...)......................................................
.......(.(..................(...)..........................).(...........))............
.......(.(..(.(........)(...(...)...)..(................).)).(...........))............
>AJ301559.2/6784-6876
CGCCUGCGCGGGAGAGUUCCGAGGCAUCCAGUCUCGGACGCCGAAGGAGCAAUACCUCCCCGUCAAUCUCUCAGGCACACGGACGCGUGUGGG
.........................................(...)...............................................
..........(.(............................(...)........................)(.........))..........
..........(.(..(.(...................)(..(...)..).(...............))..)(.........))..........
>AE016822.1/1714518-1714420
GAGGCCGAUGCGGGAGAGCUGCGGGGGAGAACCCGCCCGCGGCACCGAAGGAGCAAUCCUCCCCGACAAUCUCUCAGGUACGCGUACCGCAUCGGACUG
.............................................(...).................................................
...........(.(...............................(...)........................).(.........))...........
...........(.(...(.(....................)(...(...)...)(..............))...)..(........))...........
>AL596168.1/161626-161717
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
...................................(...)....................................................
............(.(....................(...)..........................)(.........).)............
............(.(..(.(...........)(..(...)..).(...............)..)..)(.........).)............
>BX640439.1/206443-206535
ACGCAUGUCGCGGGAGAGAGCGGCCGAUUGCGGCUGCCGCCGAAGGCGCAAUUCGCCCGGAAUCGCUCAGGUAACCCAUACCGCGACUGCAUC
........................................(...)................................................
..............(.(.......................(...).......................)(.......))..............
..............(.((.(................)(..(...)..)(...............))..)(.......))..............
>CR522870.1/1448704-1448793
AGCCUCUGGAGAGUCUCAUUAUGGGCACCGAAGGAGCAAGCCAGCGUGUAGCUGGUGAACCUCUCAGGUACAAGGGACAGAGUGUAGCAG
............................(...).........................................................
.......(.(..................(...)............................)(............).)............
.......(.(..(.(.........)(..(...)..)(...................))..)(..............))............
>AE008691.1/1826408-1826312
AUGAAGAAUGCGGGAGAGACCCUAACCGGGCGCCGAAGGAGCAAGCGGGUAUAUGGCCUGUAUACUCGUGAAACUCUCAGGCAAAAGGACCGCAUUC
.................................(...)...........................................................
............(.(..................(...)....................................).(...........)).......
............(.(..(.(........)(...(...)...)..(.......................)..)..).(...........)).......
>BX640445.1/160210-160126
ACGUGCAGUUCGGGAGAGACCGUCCAGCGGACGGCGCCGACGGAGCAACCACCCCGGAAACUCUCAGGCAAAAGGACCGACCUGC
.....................................(...)...........................................
............(.(......................(...).......................)(........))........
............(.(..(.(.............)(..(...)..)(.............))....)(........))........
>AL939108.1/255539-255444
UGACCCCGCGCGGGAGAGUCCUCCGGACAUCACCGGAGGCGCCGAAGGAGCAAAUCCUCCCCGGAAUCUCUCAGGCUCACGUACCGCACGGACGAG
..........................................(...).................................................
...........(.(............................(...)......................)(...........))............
...........(.(...(.(.................)(...(...)...).(.............)).)(...........))............
>AL591978.1/212840-212931
GUGAAUGUAAGCAGAGAGACUGCGAAAAGCAGCGCCGACGGGGAAAGCAUAUAUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
...................................(...)....................................................
............(.(....................(...)..........................)(.........).)............
............(.(..(.(...........)(..(...)..).(...............)..)..)(.........).)............
>BX572605.1/160670-160756
CUAAGUCGCGUCGGGAGAGAUCGGCCGCAAGGCCGGCGCCGAAGGAGCAACCGCCCCGGAAACUCUCAGGCAAACGGACCGCGCGGC
.......................................(...)...........................................
.............(.(.......................(...).......................)(........))........
.............(.(..(.(..............)(..(...)..)(.............))....)(........))........
>AL591688.1/1674990-1674906
CGACCUCGUUGGGAGAAACCGGUUCGAUCCGGUGCCGAAGGAGCAACCGCCCCGGAAACUCUCAGGCCAAAGGACCAGCAAGGUG
...................................(...).............................................
..........(.(......................(...)......................).(.........)).........
..........(.(.(.(...............)(.(...).)(...............).).).(.........)).........
>AE017355.1/2242962-2242862
AUGAACCAUUCAGGAGAAGGUCUAUUGAUCUACCGACGGGGCAAAAAGUUGUUAACCGACUUUGAAACUCUCAGGUCUUGUUUACAAGUAGAACUGCAUGG
.................................(...)...............................................................
...........(.(...................(...).................................)...(............))...........
...........(.(.(.(............)(.(...)..)..(...................)...)...)...(............))...........
>BX640445.1/160122-160016
AACAUCUGGAGAGUGGCGCGCGGUACGGCGCCCACCGAAGGGGAUCCCUGGCGCGUUUGCAGCGGCGCACGGGUGAAGCUCUCAGGUAAAUGGACAGAUGGGGUUGC
...................................(...)...................................................................
.......(.(.........................(...).........................................)(........)..)............
.......(.(.....(.(............)(...(...)...)(............................).).....)(........)..)............
>CR543861.1/1990073-1989965
AUAAUCUGGAGAGAAGUAUUUCAAAAAUACUCACCGAAGGGGAUGGUACGUAGAUUUAUGGAAAUCUAUAGCUACCGAAGCUCUCAGGUACCCUGACAGAUGGGGCAAC
..................................(...)......................................................................
.......(.(........................(...)............................................)(.........).)............
.......(.(..(.(...............)(..(...)..)..(..............................)..)....)(.........).)............
>CP000919.1/381215-381303
GGACGGAACUCUGGAGAGACCGUAAAGGCACCGAAGGGGCAAGGCAGGCAACUGCUCAAACUCUCAGGUAAAAGGACAGAGCUAGGAUA
...............................(...).....................................................
............(.(................(...)...........................)(.........).)............
............(.((.(..........)(.(...)..).(................)..)..)(.........).)............
>CR543861.1/1990167-1990077
AUGAUUAUUGCAGGAGAGAUAUUCUUGCAAAGGAUACGCCGAAGGAGCAACGACCCCGGAAACUCUCAGGCAGAAGGACUGUAAUAAUCGA
.......................................(...)...............................................
...........(.(.........................(...)......................).(.........))...........
...........(.(...(.(...............)(..(...)..)(.............))...).(.........))...........
>AL939108.1/255442-255325
UCACUCUGGAAAGCAGGGCGGGUGUCGACGGCUUCCGCUCUCACCGACGGUGAAAGCCGGGCAGAGCUCCAGGGCUCGCCCGGUGAAGCUCUCAGGUUGAGAUGACAGAGGGGGAGGC
............................................(...).....................................................................
.......(.(..................................(...).........................................)(............))............
.......(.(.....(.(...................)(.....(...).....)(...........................).)....)(............))............
>AE008922.1/1299977-1299896
GUAACACGGUGGGAGAAGCGGCACUGCCGCUGCCGAAGGCGCAACAGCCCGUAAUCGCUCAGGCCCGAUACCAUCUUCAACA
.................................(...)............................................
...........(.(...................(...)......................)(......).)...........
...........(.((.(.............)(.(...).).(..............))..)(......).)...........
>D84432.1/169999-170100
AUGACAGCAAGGGGAGAGACCUGACCGAAAACCUCGGGAUACAGGCGCCGAAGGAGCAAACUGCGGAGUGAAUCUCUCAGGCAAAAGAACUCUUGCUCGACG
................................................(...).................................................
............(.(.................................(...).........................)(........))............
............(.(.......(.(..................)(...(...)...)(............))......)(........))............
>AE014292.2/713320-713218
UAAGACAACUCUGGAAAGUCGGGGGCAACUCCGCGCCGAAGGUGUAAGUAUGGCUUUAUAUAUAGCCAUGCGAGUCUCUCAGGCCUGAGACAGAGGGGCACGA
....................................(...)..............................................................
............(.(.....................(...).................................).(............))............
............(.(..(.(............)(..(...)..)....(....................))...).(............))............
>AJ312125.1/523-454
AUGAAGGUGGCAGGAGAGACCCAUGAGGGGCGCCGAAGAAGUAAAGCUUUCAGGCUUAGGACUGUCAUCA
.................................(...)................................
....(.(..........................(...)..................)(....))......
....(.(........(.(............)(.(...))(.......)).......)(....))......
>AL766849.1/65560-65639
UGACGUCAUUCAGGAGAAGAAAGUUAGACUUUCGCCGAAGGAAUUACACUCUCAGGUGUCUUAAGACAGGACUGAUUGAC
...................................(...)........................................
...........(.(.....................(...).....................)..(......)).......
...........(.(.(.(...............)((...))(........))).(................)).......
>AE008923.1/1392465-1392356
CAACUCUGGAGAGACCGGCCGAUGCCGGCGCCGAAGGGGCACGAAACGCAGGCAGGCCACGCGCCAGGCCGCGUUUUUAAACUCUCAGGCAAAAGGACAGAGGGGCGCGA
...............................(...)..........................................................................
.......(.(.....................(...)................................................)(.........).)............
>BX897699.1/1435871-1435783
CAGAUCUGGAAAGUCGGGAGGGGCCGCGCCGAAGGUGUAAGCGAAAACUUUUUUCGCGAGUCUCUCAGGUUUGUAACAGAGGGGUGCAG
.............................(...).......................................................
.......(.(...................(...)..........................)..(................)).......
>BX897699.1/1435970-1435876
UUUUGCGGGAGAGUGCAGGCUGCAAGUUUUUGGGUCUGCCGCCGAAGGGGAAAAUAGCCCGUAAUCUCUCAGGCUCUAAGGACCGUAAAAGAAGA
..........................................(...)................................................
.......(.(................................(...)...................)(...........)..)............
>CR378670.1/15794-15904
AGCCUCUGGAGAGACCCGUUAAAUCGGGCGCCGAAGGAGCAAGCUUUCCUUUUUGCUGUUUUAACAUGCAUGGAAAGUGAAACUCUCAGGCAAAAGGACAGAGGAGAUAAG
...............................(...)...........................................................................
.........(.(...................(...).................................................)(........))..............
>BX950851.1/2645129-2645034
UUGAAGCCAACUGGAGAGAGGUUGCGAUGCAACCCACCGAAGGGGCAAGCAGCUCUGCUGCGUAAACUCUCAGGUAAAGCGGACAGAGGGAGUGGC
........................(...)...................................................................
............(.(.........(...)......................................).(............))............
>BX572605.1/160757-160849
CGACUGACAUCUGGAAAGAGACCCUGCCGGGCGAUCCCGGGACGGGUCCGCCGACGGGAUAAUGCUCUCAGGCACAGCGACAGAUGGGGCUCG
...................................................(...).....................................
............(.(....................................(...).............)(.......).)............
>BX842572.1/79202-79095
CAACUCUGGAGACAGGGACGGUCGCACCGACCGUGCCUGACCGAAGGUGUAGAGCGGCGCCAUGAUGCGACGCCGCAGACUCUCAGGUUUCAGGACAGAGCGGGGAGG
.........................................(...)..............................................................
.......(.(...............................(...)....................................)..(..........)...).......
>AE004439.1/116056-116172
AACCCUUGGAGAGAGCCGUUAUAUUAAAAAGAGAUAAAACGGCCGCCGAAGGCGCAAAAAGAGCGGUUAAUUUUUCCGUUUUUUCAAACGCUCAGGCAAAAGGACAGGGGCAACAAG
..............................................(...)..................................................................
.......(.(....................................(...)..........................................)(................).)...
>BX842577.1/344356-344453
CGCUCUAGUGCGGGAGAGUUCUGUGGCUGCCAGCUACGGACGCCGAAGGAGCAAUACCUCUCCGUCAACCUCUCAGGCACCCGGACCGCGCGAGACUA
...........................................(...)..................................................
............(.(............................(...)........................)(.........).)............
>AE017355.1/2242861-2242742
GGACGAAUCUCUGGAGAGACUCCCUCUCGCUUUAAAUAGCGUAGAGGAAAACGAGCACCGAAGGAGCAAAUCCGCUACUAUAGCGGAUAAUCUCUCAGGUAAAAGGACAGAGACAAGCGA
..........................................................(...).........................................................
>AL939123.1/278050-277936
CACAUCUGAAAAGCGGACCGCCCCCGACGGCGGUCCCACCCAAGGUGCAAGCCCUGAUCGCCGUACUCCGGUGGCCGUGGCGAACCUCUCAGGUUCCGAUGACAGAUGGGGAGGA
........................(...)......................................................................................
>BX950851.1/2645260-2645133
CCGCUCCUCGCAGGAGAGAGGGCGUGUACUCCAGCAUACUUCAAGCUACAUGUACGUUGGCAUAAAGUAUAACGCUCCGCCGAAGGCGCAAACUCCCAUAAUCGCUCAGGCUACCCUAACUGCGAAUU
................................................................................(...)...........................................
>AL766849.1/65640-65772
AGACGGACUUCUGGAGAGACCUAUAAGUAGCAACAUCUUUGUAUUGACACCAAGAUGUGCUCUAGGCGCCGAAGGGGCAAGAAGAGUAAAACAACUCCUCCAAUCUCUCAGGCAAAAGGACAGAAGCUAAAAG
.....................................................................(...)...........................................................
>AJ312125.1/453-315
AGACGAUACUCUGGAGAGACCAUAUAAGGCACCGAAGGAGCAAAUUUAAUUGAGAUCUUUAUAUAAAUAAAAAAGCUCAUCCCUUUUUUAGAUCAAGCGAUUAAAUGAAUCUCUCAGGUAAAAGGACAGAGAACUGAAU
................................(...)......................................................................................................
>AE008691.1/313165-313055
AUGAAGAUAGCGAGAGAUUAUCUUCCAUAAAUGGAAGAUAGCCGAAGGGGAAAUACAAAGGCCCGCCAAGCCUUUGUAGAAGCUCUCAGGCGGCAGGAUCGCUAUCGGAUA
..........................................(...)................................................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 C(GAN)G < 0.001 10.3
AL596168.1/161626-161717
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
.........1.........2.........3.........4.........5.........6.........7.........8.........9..
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
2 R(G(R)()) < 0.001 2.1
AL596168.1/161626-161717
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
.........1.........2.........3.........4.........5.........6.........7.........8.........9..
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
3 G(N(N)()()) < 0.001 1.52
AL596168.1/161626-161717
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
.........1.........2.........3.........4.........5.........6.........7.........8.........9..
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 C(GAN)G < 0.001 10.3
AL596168.1/161626-161717
GUGAAUGUAAACAGAGAGACUGUGAAAAGCAGCGCCGACGGGGAAAGCAUAAGUUAUGUGAAACUCUCAGGCAAAAGGAUGUUUACGGGACG
.........1.........2.........3.........4.........5.........6.........7.........8.........9..
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).