D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-184   (Rfam: RF00657)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
((A)CU)G
((G)AC)G
((R)YU)G
(R()U)
((A)U)A
96.9
93.8
100.0
100.0
100.0
(R()U)

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99 %
(± 0.168 %)
Decision tree:

5-fold cross-validation: 90 %
(± 8.24 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 94.5 %
(± 3.92 %)
of AY865940.1/104-187
AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.(.(((((((((((((.((..((((((...(((((((((...)..))))))..))..))))))..)).))))))))))))).).
.........1.........2.........3.........4.........5.........6.........7.........8....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234

abstract shape: ()

Number of sequences
Structure ORBs (out of 32) (%)
1 ((A)CU)G
 29 90.6
>AAFS01000056.1/19415-19497
GUGCAUUCGUACCCUUAUCAUUCUCGCGCCCCGUGUGCAUUAAAAGACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................(.(........................................)..)..................
>CAAA01022586.1/26296-26214
CAGAUCCCCUUUCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGG
..................(..(.......................................)..)..................
>AAZX01006282.1/1019-936
GUGCCUAAAGCCCCUUAUCAUUCUCCUGUCGAGUGUUAAAAUUCUCUACGACUGGACGGAGAACUGAUAAGGGCCCGAGGGUUA
..................(.(.........................................)..)..................
>AAQR03026716.1/44271-44353
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGACUCUAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGA
..................(..(.......................................)..)..................
>AAZO01006369.1/2415-2497
UCUACUACGAUUCCUUGUCAUUCUUCUGUCCGGCGAGCUUUCAUUAAAUGUUGGACGGAGAACUGAUAAGGGCUCGUGGAUGA
..................(.(........................................)..)..................
>AAPY01671193.1/13062-12979
CCGGCCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUGAGUGUUGGACGGAGAACUGAUAAGGGUGGGUGACUGG
..................(..(........................................)..)..................
>AAGE02019030.1/3534-3452
GUGUAUUCGUACCCUUAUCAUUCUUGCGCCCCGUGUUAUAUUGUUGGCGACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................(.(........................................)..)..................
>AAGU03052093.1/7167-7250
CCAGUCACAUGCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUAAAUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(........................................)..)..................
>CAAB02008852.1/41004-41088
UCAAGCUCAUCUCCUUAUCACUUUUCCAGCCCAGCUAACUAUUGUAAAUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
..................(..(.........................................)..)..................
>AAPT01021532.1/10026-9944
GUGCAUUCGUACCCUUAUCAUUCUCUCGCCCCGUGUGGAUAACUAUACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................(.(........................................)..)..................
>CAAE01014685.1/426159-426243
UCGCUCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUAGCUUCUGAAUCCGUUGGACGGAGAACUGAUAAGGGCAUGUGCAUGA
..................(..(.........................................)..)..................
>AANG01143260.1/1786-1868
CCAGUCACAUUCCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGU
..................(..(.......................................)..)..................
>AAYZ01335901.1/553-636
CCAAUCAUGUACCCUUAUCACUUUUCCAGCCCAGCUUUGUGAUUCUGACUGUUGGACGGAGAACUGAUAAGCGUAGGUGAUUGU
..................(..(........................................)..)..................
>AC147908.3/69916-69833
CCAGUAUCACUUCCUUAUCACUUUUCCAGCCCAGCUUUUCAUGACAAACUGUUGGACGGAGAACUGAUAAGGCUGUGUGACUGC
..................(..(........................................)..)..................
>AAWU01026464.1/17067-16985
GUGUAUUCGCACCCUUAUCAUUCUUUCGCCCCGUGUACUGUUGUUUGCGACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................(.(........................................)..)..................
>AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(........................................)..)..................
>AAFR03045024.1/17871-17788
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUCUAAUGCUAAUUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(........................................)..)..................
>AADG06002732.1/85313-85396
GUGCCCAAAGCCCCUUAUCAUUCUCCUGUCCGGUGUAGAAUUGUUAGACGACUGGACGGAGAACUGAUAAGGGCCCGAGGGUCA
..................(.(.........................................)..)..................
>AAHX01056180.1/5344-5426
CCGACCACUUUCCCUUAUCAGUUUUCCAGCCAGCUUUGUGACUGUAAAUGUUGGACGGAGAACUGAUAAGGGUAAGUGACUGG
..................(..(.......................................)..)..................
>AAEU02000856.1/108964-108883
GUGCAUUCGUACCCUUAUCAUUCUCUCGCCCCGUGUGCAUUGAAGACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................((........................................)..)..................
>AADN03006053.1/41175-41092
CCGCUCUCACCCCCUUAUCACUUUUCCAGCCCAGCUUCUUCGCUCUGACUGUUGGACGGAGAACUGAUAAGGGUGUGCGGGUGG
..................(..(........................................)..)..................
>BAAB01083504.1/1731-1651
GCAGUGACGUGCCCUUGUCAUUCUUCAGGCCCUGUGUAUUUACAACUACUGGACGGAGAACUGAUAAGGGCACGCCGUGUA
..................(.(......................................)..)..................
>AAVX01446026.1/144-63
CCACUUACAUUUCCUUAUCACUUUUCCAGCCCAGCUGCACACAGAUGUGUUGGACGGAGAACUGAUAAGGGCUUGUUUCUGG
..................((........................................)..)..................
>AAJJ01000543.1/40724-40802
UUUCUUCCAGUCCCUUGUCAUUCUCUCGCCCGGUGUAUUUUAACAACUGGACGGAGAACUGAUAAGGGCUUGUGGGAAA
..................((.....................................)..)..................
>BAAE01193078.1/672-755
UCAAGCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUCUGACAAACGUUUGUUGGACGAGAACUGAUAAGGGUAUGUGCCUGG
..................(..(........................................)..)..................
>AAAB01008980.1/6487239-6487319
GUGCACUCGAACCCUUAUCAUUCUUUCGCCCCGUGUGCUUUCUAACAACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................((.......................................)..)..................
>AANH01001588.1/36190-36106
UCGAGCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUCUAUCAAAUGUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
..................(...(........................................)..)..................
>CR352253.9/159514-159598
UCGAACACGUCUCCUUAUCACUUUUCCAGCCCAGCUAUCCAUUUAGUAUUCGUUGGACGGAGAACUGAUAAGGGCAUGUGCCCGA
..................(..(.........................................)..)..................
>AAIY01348937.1/3812-3895
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGAUUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGA
..................(..(........................................)..)..................
2 ((A)CU)G
((G)AC)G
 24 75.0
>CR352253.9/159514-159598
UCGAACACGUCUCCUUAUCACUUUUCCAGCCCAGCUAUCCAUUUAGUAUUCGUUGGACGGAGAACUGAUAAGGGCAUGUGCCCGA
..................(..(....(...(........................)..)....)..)..................
>AAFR03045024.1/17871-17788
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUCUAAUGCUAAUUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(....(...(.......................)..)....)..)..................
>AAHX01056180.1/5344-5426
CCGACCACUUUCCCUUAUCAGUUUUCCAGCCAGCUUUGUGACUGUAAAUGUUGGACGGAGAACUGAUAAGGGUAAGUGACUGG
..................(..(....(..(.......................)..)....)..)..................
>AADG06002732.1/85313-85396
GUGCCCAAAGCCCCUUAUCAUUCUCCUGUCCGGUGUAGAAUUGUUAGACGACUGGACGGAGAACUGAUAAGGGCCCGAGGGUCA
..................(.(....(...(........................)..)....)..)..................
>AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(....(...(.......................)..)....)..)..................
>AAFS01000056.1/19415-19497
GUGCAUUCGUACCCUUAUCAUUCUCGCGCCCCGUGUGCAUUAAAAGACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................(.(....(...(.......................)..)....)..)..................
>AAAB01008980.1/6487239-6487319
GUGCACUCGAACCCUUAUCAUUCUUUCGCCCCGUGUGCUUUCUAACAACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................((.....(...(.....................)..)....)..)..................
>AAEU02000856.1/108964-108883
GUGCAUUCGUACCCUUAUCAUUCUCUCGCCCCGUGUGCAUUGAAGACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................((.....(...(......................)..)....)..)..................
>AANG01143260.1/1786-1868
CCAGUCACAUUCCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGU
..................(..(....(..(.......................)..)....)..)..................
>AAGE02019030.1/3534-3452
GUGUAUUCGUACCCUUAUCAUUCUUGCGCCCCGUGUUAUAUUGUUGGCGACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................(.(....(...(.......................)..)....)..)..................
>AANH01001588.1/36190-36106
UCGAGCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUCUAUCAAAUGUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
..................(...(....(..(........................)..)....)..)..................
>AADN03006053.1/41175-41092
CCGCUCUCACCCCCUUAUCACUUUUCCAGCCCAGCUUCUUCGCUCUGACUGUUGGACGGAGAACUGAUAAGGGUGUGCGGGUGG
..................(..(....(...(.......................)..)....)..)..................
>CAAA01022586.1/26296-26214
CAGAUCCCCUUUCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGG
..................(..(....(..(.......................)..)....)..)..................
>AAGU03052093.1/7167-7250
CCAGUCACAUGCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUAAAUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(....(...(.......................)..)....)..)..................
>AAPT01021532.1/10026-9944
GUGCAUUCGUACCCUUAUCAUUCUCUCGCCCCGUGUGGAUAACUAUACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................(.(....(...(.......................)..)....)..)..................
>AC147908.3/69916-69833
CCAGUAUCACUUCCUUAUCACUUUUCCAGCCCAGCUUUUCAUGACAAACUGUUGGACGGAGAACUGAUAAGGCUGUGUGACUGC
..................(..(....(...(.......................)..)....)..)..................
>AAVX01446026.1/144-63
CCACUUACAUUUCCUUAUCACUUUUCCAGCCCAGCUGCACACAGAUGUGUUGGACGGAGAACUGAUAAGGGCUUGUUUCUGG
..................((.....((.........................)..)....)..)..................
>AAQR03026716.1/44271-44353
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGACUCUAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGA
..................(..(....(..(.......................)..)....)..)..................
>AAYZ01335901.1/553-636
CCAAUCAUGUACCCUUAUCACUUUUCCAGCCCAGCUUUGUGAUUCUGACUGUUGGACGGAGAACUGAUAAGCGUAGGUGAUUGU
..................(..(....(...(.......................)..)....)..)..................
>CAAE01014685.1/426159-426243
UCGCUCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUAGCUUCUGAAUCCGUUGGACGGAGAACUGAUAAGGGCAUGUGCAUGA
..................(..(....(...(........................)..)....)..)..................
>AAIY01348937.1/3812-3895
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGAUUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGA
..................(..(....(...(.......................)..)....)..)..................
>AAPY01671193.1/13062-12979
CCGGCCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUGAGUGUUGGACGGAGAACUGAUAAGGGUGGGUGACUGG
..................(..(....(...(.......................)..)....)..)..................
>AAWU01026464.1/17067-16985
GUGUAUUCGCACCCUUAUCAUUCUUUCGCCCCGUGUACUGUUGUUUGCGACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................(.(.....(.(........................)..)....)..)..................
>CAAB02008852.1/41004-41088
UCAAGCUCAUCUCCUUAUCACUUUUCCAGCCCAGCUAACUAUUGUAAAUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
..................(..(....(....(.......................)..)....)..)..................
3 ((A)CU)G
((G)AC)G
((R)YU)G
 22 68.8
>AAIY01348937.1/3812-3895
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGAUUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGA
..................(..(....(...(((.................)..))..)....)..)..................
>AAWU01026464.1/17067-16985
GUGUAUUCGCACCCUUAUCAUUCUUUCGCCCCGUGUACUGUUGUUUGCGACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................(.(.....(.(((..................)..))..)....)..)..................
>AANH01001588.1/36190-36106
UCGAGCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUCUAUCAAAUGUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
..................(...(....(..((..(................)..))..)....)..)..................
>AADN03006053.1/41175-41092
CCGCUCUCACCCCCUUAUCACUUUUCCAGCCCAGCUUCUUCGCUCUGACUGUUGGACGGAGAACUGAUAAGGGUGUGCGGGUGG
..................(..(....(...((..(...............)..))..)....)..)..................
>AAPY01671193.1/13062-12979
CCGGCCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUGAGUGUUGGACGGAGAACUGAUAAGGGUGGGUGACUGG
..................(..(....(...(((.................)..))..)....)..)..................
>CAAB02008852.1/41004-41088
UCAAGCUCAUCUCCUUAUCACUUUUCCAGCCCAGCUAACUAUUGUAAAUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
..................(..(....(...((..(................)..))..)....)..)..................
>CR352253.9/159514-159598
UCGAACACGUCUCCUUAUCACUUUUCCAGCCCAGCUAUCCAUUUAGUAUUCGUUGGACGGAGAACUGAUAAGGGCAUGUGCCCGA
..................(..(....(...(((..................)..))..)....)..)..................
>AADG06002732.1/85313-85396
GUGCCCAAAGCCCCUUAUCAUUCUCCUGUCCGGUGUAGAAUUGUUAGACGACUGGACGGAGAACUGAUAAGGGCCCGAGGGUCA
..................(.(....(...((.(.................)..))..)....)..)..................
>AAQR03026716.1/44271-44353
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGACUCUAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGA
..................(..(....(..(((.................)..))..)....)..)..................
>CAAE01014685.1/426159-426243
UCGCUCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUAGCUUCUGAAUCCGUUGGACGGAGAACUGAUAAGGGCAUGUGCAUGA
..................(..(....(...(((..................)..))..)....)..)..................
>AAYZ01335901.1/553-636
CCAAUCAUGUACCCUUAUCACUUUUCCAGCCCAGCUUUGUGAUUCUGACUGUUGGACGGAGAACUGAUAAGCGUAGGUGAUUGU
..................(..(....(...(((.................)..))..)....)..)..................
>AC147908.3/69916-69833
CCAGUAUCACUUCCUUAUCACUUUUCCAGCCCAGCUUUUCAUGACAAACUGUUGGACGGAGAACUGAUAAGGCUGUGUGACUGC
..................(..(....(...(((.................)..))..)....)..)..................
>AAVX01446026.1/144-63
CCACUUACAUUUCCUUAUCACUUUUCCAGCCCAGCUGCACACAGAUGUGUUGGACGGAGAACUGAUAAGGGCUUGUUUCUGG
..................((.....((.((..................)..))..)....)..)..................
>AAFS01000056.1/19415-19497
GUGCAUUCGUACCCUUAUCAUUCUCGCGCCCCGUGUGCAUUAAAAGACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................(.(....(...((.(................)..))..)....)..)..................
>AAAB01008980.1/6487239-6487319
GUGCACUCGAACCCUUAUCAUUCUUUCGCCCCGUGUGCUUUCUAACAACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................(.(.....(..(((...............)..))..)....)..)..................
>AAFR03045024.1/17871-17788
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUCUAAUGCUAAUUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(....(...(((.................)..))..)....)..)..................
>AAEU02000856.1/108964-108883
GUGCAUUCGUACCCUUAUCAUUCUCUCGCCCCGUGUGCAUUGAAGACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................(.(....(...(((................)..))..)....)..)..................
>AAGU03052093.1/7167-7250
CCAGUCACAUGCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUAAAUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(....(...(((.................)..))..)....)..)..................
>CAAA01022586.1/26296-26214
CAGAUCCCCUUUCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGG
..................(..(....(..(((.................)..))..)....)..)..................
>AAPT01021532.1/10026-9944
GUGCAUUCGUACCCUUAUCAUUCUCUCGCCCCGUGUGGAUAACUAUACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................(.(....(...(((.................)..))..)....)..)..................
>AANG01143260.1/1786-1868
CCAGUCACAUUCCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGU
..................(..(....(..(((.................)..))..)....)..)..................
>AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(....(...(((.................)..))..)....)..)..................
4 ((A)CU)G
((G)AC)G
((R)YU)G
(R()U)
 16 50.0
>AC147908.3/69916-69833
CCAGUAUCACUUCCUUAUCACUUUUCCAGCCCAGCUUUUCAUGACAAACUGUUGGACGGAGAACUGAUAAGGCUGUGUGACUGC
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
>CAAB02008852.1/41004-41088
UCAAGCUCAUCUCCUUAUCACUUUUCCAGCCCAGCUAACUAUUGUAAAUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
.(.(..............(..(....(...((..(................)..))..)....)..)..............).).
>AANH01001588.1/36190-36106
UCGAGCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUCUAUCAAAUGUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
.(.(..............(...(....(..((..(................)..))..)....)..)..............).).
>CAAE01014685.1/426159-426243
UCGCUCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUAGCUUCUGAAUCCGUUGGACGGAGAACUGAUAAGGGCAUGUGCAUGA
.(.(..............(..(....(...(((..................)..))..)....)..)..............).).
>AAQR03026716.1/44271-44353
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGACUCUAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGA
.(.(..............(..(....(..(((.................)..))..)....)..)..............).).
>AAYZ01335901.1/553-636
CCAAUCAUGUACCCUUAUCACUUUUCCAGCCCAGCUUUGUGAUUCUGACUGUUGGACGGAGAACUGAUAAGCGUAGGUGAUUGU
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
>AAIY01348937.1/3812-3895
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGAUUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGA
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
>AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
>AAFS01000056.1/19415-19497
GUGCAUUCGUACCCUUAUCAUUCUCGCGCCCCGUGUGCAUUAAAAGACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
...(.(............(.(....(...((.(................)..))..)....)..)............).)...
>AAGU03052093.1/7167-7250
CCAGUCACAUGCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUAAAUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
>AAPT01021532.1/10026-9944
GUGCAUUCGUACCCUUAUCAUUCUCUCGCCCCGUGUGGAUAACUAUACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
...(.(............(.(....(...(((.................)..))..)....)..)............).)...
>AAFR03045024.1/17871-17788
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUCUAAUGCUAAUUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
>AAPY01671193.1/13062-12979
CCGGCCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUGAGUGUUGGACGGAGAACUGAUAAGGGUGGGUGACUGG
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
>AANG01143260.1/1786-1868
CCAGUCACAUUCCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGU
.(.(..............(..(....(..(((.................)..))..)....)..)..............).).
>AAEU02000856.1/108964-108883
GUGCAUUCGUACCCUUAUCAUUCUCUCGCCCCGUGUGCAUUGAAGACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
...(.(............(.(....(...(((................)..))..)....)..)............).)...
>CAAA01022586.1/26296-26214
CAGAUCCCCUUUCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGG
.(.(..............(..(....(..(((.................)..))..)....)..)..............).).
5 ((A)CU)G
((G)AC)G
((R)YU)G
(R()U)
((A)U)A
 12 37.5
>AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AAIY01348937.1/3812-3895
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGAUUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGA
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AANH01001588.1/36190-36106
UCGAGCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUCUAUCAAAUGUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
.(.(...........(.((...(....(..((..(................)..))..)....)..)).)...........).).
>AC147908.3/69916-69833
CCAGUAUCACUUCCUUAUCACUUUUCCAGCCCAGCUUUUCAUGACAAACUGUUGGACGGAGAACUGAUAAGGCUGUGUGACUGC
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AAFR03045024.1/17871-17788
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUCUAAUGCUAAUUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AAPY01671193.1/13062-12979
CCGGCCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUGAGUGUUGGACGGAGAACUGAUAAGGGUGGGUGACUGG
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>CAAB02008852.1/41004-41088
UCAAGCUCAUCUCCUUAUCACUUUUCCAGCCCAGCUAACUAUUGUAAAUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
.(.(...........(.((..(....(...((..(................)..))..)....)..)).)...........).).
>AAYZ01335901.1/553-636
CCAAUCAUGUACCCUUAUCACUUUUCCAGCCCAGCUUUGUGAUUCUGACUGUUGGACGGAGAACUGAUAAGCGUAGGUGAUUGU
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AANG01143260.1/1786-1868
CCAGUCACAUUCCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGU
.(.(...........(.((..(....(..(((.................)..))..)....)..)).)...........).).
>AAQR03026716.1/44271-44353
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGACUCUAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGA
.(.(...........(.((..(....(..(((.................)..))..)....)..)).)...........).).
>AAGU03052093.1/7167-7250
CCAGUCACAUGCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUAAAUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>CAAA01022586.1/26296-26214
CAGAUCCCCUUUCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGG
.(.(...........(.((..(....(..(((.................)..))..)....)..)).)...........).).

>CAAA01022586.1/26296-26214
CAGAUCCCCUUUCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGG
..................(..(.......................................)..)..................
..................(..(....(..(.......................)..)....)..)..................
..................(..(....(..(((.................)..))..)....)..)..................
.(.(..............(..(....(..(((.................)..))..)....)..)..............).).
.(.(...........(.((..(....(..(((.................)..))..)....)..)).)...........).).
>AAQR03026716.1/44271-44353
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGACUCUAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGA
..................(..(.......................................)..)..................
..................(..(....(..(.......................)..)....)..)..................
..................(..(....(..(((.................)..))..)....)..)..................
.(.(..............(..(....(..(((.................)..))..)....)..)..............).).
.(.(...........(.((..(....(..(((.................)..))..)....)..)).)...........).).
>AAPY01671193.1/13062-12979
CCGGCCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUGAGUGUUGGACGGAGAACUGAUAAGGGUGGGUGACUGG
..................(..(........................................)..)..................
..................(..(....(...(.......................)..)....)..)..................
..................(..(....(...(((.................)..))..)....)..)..................
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AAGU03052093.1/7167-7250
CCAGUCACAUGCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUCUAAAUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(........................................)..)..................
..................(..(....(...(.......................)..)....)..)..................
..................(..(....(...(((.................)..))..)....)..)..................
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>CAAB02008852.1/41004-41088
UCAAGCUCAUCUCCUUAUCACUUUUCCAGCCCAGCUAACUAUUGUAAAUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
..................(..(.........................................)..)..................
..................(..(....(....(.......................)..)....)..)..................
..................(..(....(...((..(................)..))..)....)..)..................
.(.(..............(..(....(...((..(................)..))..)....)..)..............).).
.(.(...........(.((..(....(...((..(................)..))..)....)..)).)...........).).
>AANG01143260.1/1786-1868
CCAGUCACAUUCCCUUAUCACUUUUCCAGCCAGCUUUGUGACUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGGUUGU
..................(..(.......................................)..)..................
..................(..(....(..(.......................)..)....)..)..................
..................(..(....(..(((.................)..))..)....)..)..................
.(.(..............(..(....(..(((.................)..))..)....)..)..............).).
.(.(...........(.((..(....(..(((.................)..))..)....)..)).)...........).).
>AAYZ01335901.1/553-636
CCAAUCAUGUACCCUUAUCACUUUUCCAGCCCAGCUUUGUGAUUCUGACUGUUGGACGGAGAACUGAUAAGCGUAGGUGAUUGU
..................(..(........................................)..)..................
..................(..(....(...(.......................)..)....)..)..................
..................(..(....(...(((.................)..))..)....)..)..................
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AC147908.3/69916-69833
CCAGUAUCACUUCCUUAUCACUUUUCCAGCCCAGCUUUUCAUGACAAACUGUUGGACGGAGAACUGAUAAGGCUGUGUGACUGC
..................(..(........................................)..)..................
..................(..(....(...(.......................)..)....)..)..................
..................(..(....(...(((.................)..))..)....)..)..................
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(........................................)..)..................
..................(..(....(...(.......................)..)....)..)..................
..................(..(....(...(((.................)..))..)....)..)..................
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AAFR03045024.1/17871-17788
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUUUCUAAUGCUAAUUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
..................(..(........................................)..)..................
..................(..(....(...(.......................)..)....)..)..................
..................(..(....(...(((.................)..))..)....)..)..................
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AANH01001588.1/36190-36106
UCGAGCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUCUAUCAAAUGUUUGUUGGACGGAGAACUGAUAAGGGUAUGUGUCUGA
..................(...(........................................)..)..................
..................(...(....(..(........................)..)....)..)..................
..................(...(....(..((..(................)..))..)....)..)..................
.(.(..............(...(....(..((..(................)..))..)....)..)..............).).
.(.(...........(.((...(....(..((..(................)..))..)....)..)).)...........).).
>AAIY01348937.1/3812-3895
CCAGUCACAUCCCCUUAUCACUUUUCCAGCCCAGCUGUGUGAUUCUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGACUGA
..................(..(........................................)..)..................
..................(..(....(...(.......................)..)....)..)..................
..................(..(....(...(((.................)..))..)....)..)..................
.(.(..............(..(....(...(((.................)..))..)....)..)..............).).
.(.(...........(.((..(....(...(((.................)..))..)....)..)).)...........).).
>AAFS01000056.1/19415-19497
GUGCAUUCGUACCCUUAUCAUUCUCGCGCCCCGUGUGCAUUAAAAGACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................(.(........................................)..)..................
..................(.(....(...(.......................)..)....)..)..................
..................(.(....(...((.(................)..))..)....)..)..................
...(.(............(.(....(...((.(................)..))..)....)..)............).)...
>AAPT01021532.1/10026-9944
GUGCAUUCGUACCCUUAUCAUUCUCUCGCCCCGUGUGGAUAACUAUACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................(.(........................................)..)..................
..................(.(....(...(.......................)..)....)..)..................
..................(.(....(...(((.................)..))..)....)..)..................
...(.(............(.(....(...(((.................)..))..)....)..)............).)...
>CAAE01014685.1/426159-426243
UCGCUCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUAGCUUCUGAAUCCGUUGGACGGAGAACUGAUAAGGGCAUGUGCAUGA
..................(..(.........................................)..)..................
..................(..(....(...(........................)..)....)..)..................
..................(..(....(...(((..................)..))..)....)..)..................
.(.(..............(..(....(...(((..................)..))..)....)..)..............).).
>AAEU02000856.1/108964-108883
GUGCAUUCGUACCCUUAUCAUUCUCUCGCCCCGUGUGCAUUGAAGACAACUGGACGGAGAACUGAUAAGGGCUCGUAUCACC
..................((........................................)..)..................
..................((.....(...(......................)..)....)..)..................
..................(.(....(...(((................)..))..)....)..)..................
...(.(............(.(....(...(((................)..))..)....)..)............).)...
>AAWU01026464.1/17067-16985
GUGUAUUCGCACCCUUAUCAUUCUUUCGCCCCGUGUACUGUUGUUUGCGACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................(.(........................................)..)..................
..................(.(.....(.(........................)..)....)..)..................
..................(.(.....(.(((..................)..))..)....)..)..................
>AADG06002732.1/85313-85396
GUGCCCAAAGCCCCUUAUCAUUCUCCUGUCCGGUGUAGAAUUGUUAGACGACUGGACGGAGAACUGAUAAGGGCCCGAGGGUCA
..................(.(.........................................)..)..................
..................(.(....(...(........................)..)....)..)..................
..................(.(....(...((.(.................)..))..)....)..)..................
>AADN03006053.1/41175-41092
CCGCUCUCACCCCCUUAUCACUUUUCCAGCCCAGCUUCUUCGCUCUGACUGUUGGACGGAGAACUGAUAAGGGUGUGCGGGUGG
..................(..(........................................)..)..................
..................(..(....(...(.......................)..)....)..)..................
..................(..(....(...((..(...............)..))..)....)..)..................
>AAVX01446026.1/144-63
CCACUUACAUUUCCUUAUCACUUUUCCAGCCCAGCUGCACACAGAUGUGUUGGACGGAGAACUGAUAAGGGCUUGUUUCUGG
..................((........................................)..)..................
..................((.....((.........................)..)....)..)..................
..................((.....((.((..................)..))..)....)..)..................
>AAAB01008980.1/6487239-6487319
GUGCACUCGAACCCUUAUCAUUCUUUCGCCCCGUGUGCUUUCUAACAACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................((.......................................)..)..................
..................((.....(...(.....................)..)....)..)..................
..................(.(.....(..(((...............)..))..)....)..)..................
>CR352253.9/159514-159598
UCGAACACGUCUCCUUAUCACUUUUCCAGCCCAGCUAUCCAUUUAGUAUUCGUUGGACGGAGAACUGAUAAGGGCAUGUGCCCGA
..................(..(.........................................)..)..................
..................(..(....(...(........................)..)....)..)..................
..................(..(....(...(((..................)..))..)....)..)..................
>AAGE02019030.1/3534-3452
GUGUAUUCGUACCCUUAUCAUUCUUGCGCCCCGUGUUAUAUUGUUGGCGACUGGACGGAGAACUGAUAAGGGCCCGGGUCACC
..................(.(........................................)..)..................
..................(.(....(...(.......................)..)....)..)..................
>AAHX01056180.1/5344-5426
CCGACCACUUUCCCUUAUCAGUUUUCCAGCCAGCUUUGUGACUGUAAAUGUUGGACGGAGAACUGAUAAGGGUAAGUGACUGG
..................(..(.......................................)..)..................
..................(..(....(..(.......................)..)....)..)..................
>AAZX01006282.1/1019-936
GUGCCUAAAGCCCCUUAUCAUUCUCCUGUCGAGUGUUAAAAUUCUCUACGACUGGACGGAGAACUGAUAAGGGCCCGAGGGUUA
..................(.(.........................................)..)..................
>AAZO01006369.1/2415-2497
UCUACUACGAUUCCUUGUCAUUCUUCUGUCCGGCGAGCUUUCAUUAAAUGUUGGACGGAGAACUGAUAAGGGCUCGUGGAUGA
..................(.(........................................)..)..................
>BAAB01083504.1/1731-1651
GCAGUGACGUGCCCUUGUCAUUCUUCAGGCCCUGUGUAUUUACAACUACUGGACGGAGAACUGAUAAGGGCACGCCGUGUA
..................(.(......................................)..)..................
>AAJJ01000543.1/40724-40802
UUUCUUCCAGUCCCUUGUCAUUCUCUCGCCCGGUGUAUUUUAACAACUGGACGGAGAACUGAUAAGGGCUUGUGGGAAA
..................((.....................................)..)..................
>BAAE01193078.1/672-755
UCAAGCACAUCUCCUUAUCACUUUUCCAGCCCAGCUAUCUGACAAACGUUUGUUGGACGAGAACUGAUAAGGGUAUGUGCCUGG
..................(..(........................................)..)..................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 ((A)CU)G < 0.001 11.1
AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.........1.........2.........3.........4.........5.........6.........7.........8....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234
2 ((G)AC)G < 0.001 4.88
AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.........1.........2.........3.........4.........5.........6.........7.........8....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234
3 ((R)YU)G < 0.001 7.2
AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.........1.........2.........3.........4.........5.........6.........7.........8....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234
4 (R()U) < 0.001 2.81
AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.........1.........2.........3.........4.........5.........6.........7.........8....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234
5 ((A)U)A < 0.001 1.05
AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.........1.........2.........3.........4.........5.........6.........7.........8....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 ((A)CU)G < 0.001 11.1
AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.........1.........2.........3.........4.........5.........6.........7.........8....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234
2 ((G)AY)G < 0.001 1.1
AY865940.1/104-187
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
CCAGUCACGUCCCCUUAUCACUUUUCCAGCCCAGCUUUGUGACUGUAAGUGUUGGACGGAGAACUGAUAAGGGUAGGUGAUUGA
.........1.........2.........3.........4.........5.........6.........7.........8....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234
3 (CC()CG) 0.951 27.4
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).