D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Plant small nucleolar RNA U3   (Rfam: RF01847)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
R(GAU)C
A(C(U))
(.GN.)
((R)U)C
((U)RG)A
A(G(A)())
95.2
100.0
100.0
85.7
66.7
52.4
R(GAU)C
A(C(U))
((R)U)C
((U)RG)A

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.7 %
(± 0.145 %)
Decision tree:

5-fold cross-validation: 93.6 %
(± 7.83 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 93.9 %
(± 8 %)
of AB007644.1/28030-28248
AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
(((((((((.((((((((...)))))))))))))))))(..((((((((((((((..)))))))))(((((((.(...(((((((....))))))))(((((((((((.(((((.(((.((((((((((((((((..))))).)).)))))))))..)))).)))).(((((((((((....))))))))))).)))))))))))))))))))))))).
...................................................................................................1...................................................................................................2...................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........
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abstract shape: ()(()(()(()())))

Number of sequences
Structure ORBs (out of 21) (%)
1 R(GAU)C
 20 95.2
>AC225244.1/2684-2865
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACUGCCAGCAGGGUUGGACUUAUCGCCGGGGGCCCGGUUACCGUCACCUGGCGGUAACCGCGCAAAACCACGAUAAAUUUGCAAUUUGAAAUUUGAAUUCAAAAAUUCGGCAAACCGCGGUUACCGCGCGAUGUGUGACGGGCC
.................(...)................................................................................................................................................................
>X63065.1/858-1075
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGCUGCAUCCUUUACCAAUAAGGAGGCAAGCACUUCAGUCUGGUUGAUGCAUCUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUUCCCUUAUGGGGGCAAUCCACGGCUGUAGAGGAUCGUUCCUGCCUUGCUCAUGCUUGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACU
.................(...)....................................................................................................................................................................................................
>X52630.1/529-746
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCUUAAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUUGGAUGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGUCGGGGUGGUCGCACGGCGGUCUGACAGGUU
.................(...)....................................................................................................................................................................................................
>AL606650.5/82385-82608
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUCAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUGACGGCCCGGAUCAUUUCCGUGUGAAUUGAUCCCGCGGCUGUAGAGGAUCGUUCCUUGCCGGGCUUUCGCUUGGUCAGGGUUGGCCCAUAGGUUGUCUGACAGGCA
.................(...)..........................................................................................................................................................................................................
>X52629.1/325-543
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCAGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
.................(...).....................................................................................................................................................................................................
>AC144759.11/63139-62925
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUUGUACUACUGUGUCCUUGAUUUCUAAGGAGAUAGGAACAUAUGUCUGGUAGAUGAGUUGUGACCGUGUGAUCAGAGCGUGAUUAACGGCCAGGAUGAUGUGUGCAUCAUCUUCAGCUGUAGAUGAUCGUUCUUGGCCUAGUUCAACUAACCGGGAUGGUCACAUGGUUGUCUGACAGAUU
.................(...).................................................................................................................................................................................................
>AC189322.2/92619-92834
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAUUUCUAAGGAGACAGGCCCCUAAACCUGGUUGAUGAAUCAUAGCCGUGCGAUCUGAGUGUGAUUAACGGUUACGAUUCUCCUCGGAGUCUCUGCACUGUAGAGGAUCGCUAUCCGGUUAGGUUUGACCUCUCCGGGGUGGUCGCACGGUUGUCUGACAGGCC
.................(...)..................................................................................................................................................................................................
>X14411.1/488-704
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCAUUGUAUCCUUGAAUUCUAAGGAGACAGGAAUCCAAGUCUGGUUGAUGAAGCAUGGCCAUGUGACCAGAGCGUGAUUAACAGCUAUCCAUGGUUUCUCGAGCUGUGGUUACAGUAGAUGAUCGUUCUUAGACCCUUAAUCUCAGGCCUAAGAUGGUCUCAUGGCUGUCUGACAGAC
.................(...)...................................................................................................................................................................................................
>AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
.................(...).....................................................................................................................................................................................................
>Z29641.1/759-982
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUCGUACUGUUGCAUCUUUGAUUAAUAAGAAGGCAAGUACUUAAACCUGGUUGAUGAGAAUUUGACCUGUGGGCCAGAGCGUGAUUUAACGGCCAGGACUUUGCCUUGGUGCAUUGUCUGGAGCUGCAGAUGAUCGUUCUUGGCCAGGCUUAAUGUCUGGCUAGGGUGGCCUACAGGCUGUUUGACAGGUU
.................(...)..........................................................................................................................................................................................................
>Z11883.1/3211-3429
ACGACCUUACUUGAACAAGAUCUGUUCUAUAGGCUCGUACCACUGUAUCGUUGACUUCUAAGGAGAUAGGAAACCAAGUCUGGUGGAUGAAUCGUGGUCAUGAAACUCGAGUGUGAUGAUUGUUCUUCAGGGCCUUUCGGGGUCAUUGUGUGCAGUAGAUGAUUGUUCUCAGCCUGGUUUGCCCGUCCCUGAGAUGGUCUCAUGGCAGUCUGACAGACU
.................(...).....................................................................................................................................................................................................
>AAAA02023191.1/14338-14116
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUUACCAAUAAGGAGGCAAGCACUCAAGUCUGGUUGAUGCGACAUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUGACUCCCGAUGCGGGCUCAUCCGACGGCUGUAGAGGAUCGUUCCUGCCUGGUUCACUCCAGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACA
.................(...).........................................................................................................................................................................................................
>ABEU01014426.1/8756-8528
ACGACUAUACUUGAACAGGAUCUGUUCUAUAGUGCGUACAUCUGAUCUGUGUUCUCCAACACAGACAAGACCUUCAACCCGGACGAUGAUUCAGGGCUCUCCGGCCUGAGCGCGAUUGCCGCGGCUGGUGCCAGUGGCCCCCUUGCGGGGGCCGGAGCCAGCCUGCCAGAUGAACGUCCCGCCUCCUCAUUCCUGGGGGCGGUGAUGGACGGAGAGCGUUCUGACGGGC
.................(...)...............................................................................................................................................................................................................
>AARH01001777.1/338669-338456
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUCGUACCUCUGUAUCCUUAAUCACUAAGGAGACAGGAACCUAAGCCUGGUUGAGGAAUUGUGACCGCUUGAUCAUAGCGUGAGUAAUGGCUUGAUUGUCCUCGUGAUCAUCAUGGCUGUAGAGGAUCGUUUCCUAGCCAUUUACCUGGCUGGGAAUGGUCUUGCGGUUGUCUGACAGGGU
.................(...)................................................................................................................................................................................................
>ABIM01001008.1/15000-15216
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGUUCGUACCUCUGUUUCCUGGAGUUCGAAGGAGACAGGAUCUCAAGUCUGGCGGAUGAAUCGUGACCGUGUGAUCAGAGCGUGAUUAAUGGCAGAAGCGGUUCUCGAACCGUUGAUGCUGUAGAGGAUCGUUCUCAGUUGGGUUUGAUCCUGACUGGGGGUGGUCACCCGGUUAUCUGACAGACC
.................(...)...................................................................................................................................................................................................
>FN594951.1/2080023-2080236
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAGUUCUAAGGAGACAGGAACCUCAGUCUGGUGGAUGAACAAUGACCGUGCGAUCAGAGCGUGAUUAACUGCUUAACCUGCUUUGUUGGGUCAGGGCUGUAGAGGAUCGUUCUCAGCCGAGCUUUGGCUCGACUGGGAUGGUCGCACGGUUGUCUGACAGAC
.................(...)................................................................................................................................................................................................
>AASG02024127.1/1647-1860
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUUAUCACAAAGGAGACAGGAACUCAAGUCUGGUGGAUGAAUCAUGACCGUGUGAUCAGAGCGUGAUUAACGGCUGGAGGAUCUUUCUGGGUUCUCAGGGCUGUAGAGGAUCGUACCUAGGCUGCCUAGCUGACUGGGAUGAUCGCAUGGUUGUCUGACAGACU
.................(...)................................................................................................................................................................................................
>AL606444.3/140424-140208
ACGACCUUACUUGAACGGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUUAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUAACGGCCGGAUCACUGGCUGAUUUGAUCCCACGGCUGUAGAGGAUCGUUUCUUGCCGGGCCUCGCCUGGCCAGGAUGGCUCUCAGGUUCUCUGACAGGC
.................(...)...................................................................................................................................................................................................
>AJ001179.1/171-392
AUGACCGUACUUGAACAGGAUCUGUUCUAUAGGUCAUACACCUGUCUGUGUUCUUCAACUCAGACAAGUUCCUCAACCCAGACGAAGACAUGCAGCCCCGGCGCCUGAGCGCUACGUAUGACCACUGUGGCCGUGCCGCUGGCACGGACGCGUGGUUCUGGAUGAACGUCCCGCCGAGACCAUUCCACCGGCAGGGAUGGUGCUCGGGGCAUUCAGAUGGGU
.................(...)........................................................................................................................................................................................................
>AP004474.1/40162-40381
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACAACUGUAUCCUUGAGUUCUAAGGAGACAGGAACCAAAGUCUGGUUGAUGAACACUGACCGUGUGAUCAGAGCGUGAUUAAUAGUCGUCCGAUUGACCUUCGGGUUCAUCAGAUCGACGGUGGAGGAUCGUUCUCAGCGGGUAUCACCGGCUGGGGUGGUCACACGGUUGUCUGACAGGCU
.................(...)......................................................................................................................................................................................................
2 R(GAU)C
A(C(U))
 20 95.2
>AC225244.1/2684-2865
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACUGCCAGCAGGGUUGGACUUAUCGCCGGGGGCCCGGUUACCGUCACCUGGCGGUAACCGCGCAAAACCACGAUAAAUUUGCAAUUUGAAAUUUGAAUUCAAAAAUUCGGCAAACCGCGGUUACCGCGCGAUGUGUGACGGGCC
........(.(......(...)......))........................................................................................................................................................
>X52629.1/325-543
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCAGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
........(.(......(...)......)).............................................................................................................................................................................................
>AC189322.2/92619-92834
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAUUUCUAAGGAGACAGGCCCCUAAACCUGGUUGAUGAAUCAUAGCCGUGCGAUCUGAGUGUGAUUAACGGUUACGAUUCUCCUCGGAGUCUCUGCACUGUAGAGGAUCGCUAUCCGGUUAGGUUUGACCUCUCCGGGGUGGUCGCACGGUUGUCUGACAGGCC
........(.(......(...)......))..........................................................................................................................................................................................
>X63065.1/858-1075
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGCUGCAUCCUUUACCAAUAAGGAGGCAAGCACUUCAGUCUGGUUGAUGCAUCUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUUCCCUUAUGGGGGCAAUCCACGGCUGUAGAGGAUCGUUCCUGCCUUGCUCAUGCUUGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACU
........(.(......(...)......))............................................................................................................................................................................................
>Z11883.1/3211-3429
ACGACCUUACUUGAACAAGAUCUGUUCUAUAGGCUCGUACCACUGUAUCGUUGACUUCUAAGGAGAUAGGAAACCAAGUCUGGUGGAUGAAUCGUGGUCAUGAAACUCGAGUGUGAUGAUUGUUCUUCAGGGCCUUUCGGGGUCAUUGUGUGCAGUAGAUGAUUGUUCUCAGCCUGGUUUGCCCGUCCCUGAGAUGGUCUCAUGGCAGUCUGACAGACU
........(.(......(...)......)).............................................................................................................................................................................................
>AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
........(.(......(...)......)).............................................................................................................................................................................................
>AASG02024127.1/1647-1860
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUUAUCACAAAGGAGACAGGAACUCAAGUCUGGUGGAUGAAUCAUGACCGUGUGAUCAGAGCGUGAUUAACGGCUGGAGGAUCUUUCUGGGUUCUCAGGGCUGUAGAGGAUCGUACCUAGGCUGCCUAGCUGACUGGGAUGAUCGCAUGGUUGUCUGACAGACU
........(.(......(...)......))........................................................................................................................................................................................
>AARH01001777.1/338669-338456
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUCGUACCUCUGUAUCCUUAAUCACUAAGGAGACAGGAACCUAAGCCUGGUUGAGGAAUUGUGACCGCUUGAUCAUAGCGUGAGUAAUGGCUUGAUUGUCCUCGUGAUCAUCAUGGCUGUAGAGGAUCGUUUCCUAGCCAUUUACCUGGCUGGGAAUGGUCUUGCGGUUGUCUGACAGGGU
........(.(......(...)......))........................................................................................................................................................................................
>X14411.1/488-704
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCAUUGUAUCCUUGAAUUCUAAGGAGACAGGAAUCCAAGUCUGGUUGAUGAAGCAUGGCCAUGUGACCAGAGCGUGAUUAACAGCUAUCCAUGGUUUCUCGAGCUGUGGUUACAGUAGAUGAUCGUUCUUAGACCCUUAAUCUCAGGCCUAAGAUGGUCUCAUGGCUGUCUGACAGAC
........(.(......(...)......))...........................................................................................................................................................................................
>AC144759.11/63139-62925
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUUGUACUACUGUGUCCUUGAUUUCUAAGGAGAUAGGAACAUAUGUCUGGUAGAUGAGUUGUGACCGUGUGAUCAGAGCGUGAUUAACGGCCAGGAUGAUGUGUGCAUCAUCUUCAGCUGUAGAUGAUCGUUCUUGGCCUAGUUCAACUAACCGGGAUGGUCACAUGGUUGUCUGACAGAUU
........(.(......(...)......)).........................................................................................................................................................................................
>Z29641.1/759-982
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUCGUACUGUUGCAUCUUUGAUUAAUAAGAAGGCAAGUACUUAAACCUGGUUGAUGAGAAUUUGACCUGUGGGCCAGAGCGUGAUUUAACGGCCAGGACUUUGCCUUGGUGCAUUGUCUGGAGCUGCAGAUGAUCGUUCUUGGCCAGGCUUAAUGUCUGGCUAGGGUGGCCUACAGGCUGUUUGACAGGUU
........(.(......(...)......))..................................................................................................................................................................................................
>X52630.1/529-746
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCUUAAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUUGGAUGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGUCGGGGUGGUCGCACGGCGGUCUGACAGGUU
........(.(......(...)......))............................................................................................................................................................................................
>AAAA02023191.1/14338-14116
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUUACCAAUAAGGAGGCAAGCACUCAAGUCUGGUUGAUGCGACAUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUGACUCCCGAUGCGGGCUCAUCCGACGGCUGUAGAGGAUCGUUCCUGCCUGGUUCACUCCAGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACA
........(.(......(...)......)).................................................................................................................................................................................................
>ABEU01014426.1/8756-8528
ACGACUAUACUUGAACAGGAUCUGUUCUAUAGUGCGUACAUCUGAUCUGUGUUCUCCAACACAGACAAGACCUUCAACCCGGACGAUGAUUCAGGGCUCUCCGGCCUGAGCGCGAUUGCCGCGGCUGGUGCCAGUGGCCCCCUUGCGGGGGCCGGAGCCAGCCUGCCAGAUGAACGUCCCGCCUCCUCAUUCCUGGGGGCGGUGAUGGACGGAGAGCGUUCUGACGGGC
........(.(......(...)......)).......................................................................................................................................................................................................
>AP004474.1/40162-40381
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACAACUGUAUCCUUGAGUUCUAAGGAGACAGGAACCAAAGUCUGGUUGAUGAACACUGACCGUGUGAUCAGAGCGUGAUUAAUAGUCGUCCGAUUGACCUUCGGGUUCAUCAGAUCGACGGUGGAGGAUCGUUCUCAGCGGGUAUCACCGGCUGGGGUGGUCACACGGUUGUCUGACAGGCU
........(.(......(...)......))..............................................................................................................................................................................................
>AJ001179.1/171-392
AUGACCGUACUUGAACAGGAUCUGUUCUAUAGGUCAUACACCUGUCUGUGUUCUUCAACUCAGACAAGUUCCUCAACCCAGACGAAGACAUGCAGCCCCGGCGCCUGAGCGCUACGUAUGACCACUGUGGCCGUGCCGCUGGCACGGACGCGUGGUUCUGGAUGAACGUCCCGCCGAGACCAUUCCACCGGCAGGGAUGGUGCUCGGGGCAUUCAGAUGGGU
........(.(......(...)......))................................................................................................................................................................................................
>FN594951.1/2080023-2080236
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAGUUCUAAGGAGACAGGAACCUCAGUCUGGUGGAUGAACAAUGACCGUGCGAUCAGAGCGUGAUUAACUGCUUAACCUGCUUUGUUGGGUCAGGGCUGUAGAGGAUCGUUCUCAGCCGAGCUUUGGCUCGACUGGGAUGGUCGCACGGUUGUCUGACAGAC
........(.(......(...)......))........................................................................................................................................................................................
>AL606444.3/140424-140208
ACGACCUUACUUGAACGGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUUAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUAACGGCCGGAUCACUGGCUGAUUUGAUCCCACGGCUGUAGAGGAUCGUUUCUUGCCGGGCCUCGCCUGGCCAGGAUGGCUCUCAGGUUCUCUGACAGGC
........(.(......(...)......))...........................................................................................................................................................................................
>AL606650.5/82385-82608
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUCAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUGACGGCCCGGAUCAUUUCCGUGUGAAUUGAUCCCGCGGCUGUAGAGGAUCGUUCCUUGCCGGGCUUUCGCUUGGUCAGGGUUGGCCCAUAGGUUGUCUGACAGGCA
........(.(......(...)......))..................................................................................................................................................................................................
>ABIM01001008.1/15000-15216
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGUUCGUACCUCUGUUUCCUGGAGUUCGAAGGAGACAGGAUCUCAAGUCUGGCGGAUGAAUCGUGACCGUGUGAUCAGAGCGUGAUUAAUGGCAGAAGCGGUUCUCGAACCGUUGAUGCUGUAGAGGAUCGUUCUCAGUUGGGUUUGAUCCUGACUGGGGGUGGUCACCCGGUUAUCUGACAGACC
........(.(......(...)......))...........................................................................................................................................................................................
3 R(GAU)C
A(C(U))
(.GN.)
 19 90.5
>AC225244.1/2684-2865
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACUGCCAGCAGGGUUGGACUUAUCGCCGGGGGCCCGGUUACCGUCACCUGGCGGUAACCGCGCAAAACCACGAUAAAUUUGCAAUUUGAAAUUUGAAUUCAAAAAUUCGGCAAACCGCGGUUACCGCGCGAUGUGUGACGGGCC
........(.(......(...)......)).......................................................................................(..).............................................................
>AASG02024127.1/1647-1860
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUUAUCACAAAGGAGACAGGAACUCAAGUCUGGUGGAUGAAUCAUGACCGUGUGAUCAGAGCGUGAUUAACGGCUGGAGGAUCUUUCUGGGUUCUCAGGGCUGUAGAGGAUCGUACCUAGGCUGCCUAGCUGACUGGGAUGAUCGCAUGGUUGUCUGACAGACU
........(.(......(...)......)).........................................................(..)...........................................................................................................................
>X52630.1/529-746
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCUUAAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUUGGAUGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGUCGGGGUGGUCGCACGGCGGUCUGACAGGUU
........(.(......(...)......))......................................................(....)................................................................................................................................
>AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
........(.(......(...)......))......................................................(....).................................................................................................................................
>X52629.1/325-543
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCAGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
........(.(......(...)......))......................................................(....).................................................................................................................................
>X14411.1/488-704
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCAUUGUAUCCUUGAAUUCUAAGGAGACAGGAAUCCAAGUCUGGUUGAUGAAGCAUGGCCAUGUGACCAGAGCGUGAUUAACAGCUAUCCAUGGUUUCUCGAGCUGUGGUUACAGUAGAUGAUCGUUCUUAGACCCUUAAUCUCAGGCCUAAGAUGGUCUCAUGGCUGUCUGACAGAC
........(.(......(...)......)).........................................................(..)..............................................................................................................................
>FN594951.1/2080023-2080236
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAGUUCUAAGGAGACAGGAACCUCAGUCUGGUGGAUGAACAAUGACCGUGCGAUCAGAGCGUGAUUAACUGCUUAACCUGCUUUGUUGGGUCAGGGCUGUAGAGGAUCGUUCUCAGCCGAGCUUUGGCUCGACUGGGAUGGUCGCACGGUUGUCUGACAGAC
........(.(......(...)......)).......................................................(....)...........................................................................................................................
>AP004474.1/40162-40381
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACAACUGUAUCCUUGAGUUCUAAGGAGACAGGAACCAAAGUCUGGUUGAUGAACACUGACCGUGUGAUCAGAGCGUGAUUAAUAGUCGUCCGAUUGACCUUCGGGUUCAUCAGAUCGACGGUGGAGGAUCGUUCUCAGCGGGUAUCACCGGCUGGGGUGGUCACACGGUUGUCUGACAGGCU
........(.(......(...)......))......................................................(....)..................................................................................................................................
>X63065.1/858-1075
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGCUGCAUCCUUUACCAAUAAGGAGGCAAGCACUUCAGUCUGGUUGAUGCAUCUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUUCCCUUAUGGGGGCAAUCCACGGCUGUAGAGGAUCGUUCCUGCCUUGCUCAUGCUUGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACU
........(.(......(...)......)).........................................................(..)...............................................................................................................................
>AC144759.11/63139-62925
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUUGUACUACUGUGUCCUUGAUUUCUAAGGAGAUAGGAACAUAUGUCUGGUAGAUGAGUUGUGACCGUGUGAUCAGAGCGUGAUUAACGGCCAGGAUGAUGUGUGCAUCAUCUUCAGCUGUAGAUGAUCGUUCUUGGCCUAGUUCAACUAACCGGGAUGGUCACAUGGUUGUCUGACAGAUU
........(.(......(...)......)).........................................................(..)............................................................................................................................
>Z11883.1/3211-3429
ACGACCUUACUUGAACAAGAUCUGUUCUAUAGGCUCGUACCACUGUAUCGUUGACUUCUAAGGAGAUAGGAAACCAAGUCUGGUGGAUGAAUCGUGGUCAUGAAACUCGAGUGUGAUGAUUGUUCUUCAGGGCCUUUCGGGGUCAUUGUGUGCAGUAGAUGAUUGUUCUCAGCCUGGUUUGCCCGUCCCUGAGAUGGUCUCAUGGCAGUCUGACAGACU
........(.(......(...)......))...........................................................................(....)............................................................................................................
>AARH01001777.1/338669-338456
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUCGUACCUCUGUAUCCUUAAUCACUAAGGAGACAGGAACCUAAGCCUGGUUGAGGAAUUGUGACCGCUUGAUCAUAGCGUGAGUAAUGGCUUGAUUGUCCUCGUGAUCAUCAUGGCUGUAGAGGAUCGUUUCCUAGCCAUUUACCUGGCUGGGAAUGGUCUUGCGGUUGUCUGACAGGGU
........(.(......(...)......))...................................................(...)................................................................................................................................
>AL606650.5/82385-82608
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUCAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUGACGGCCCGGAUCAUUUCCGUGUGAAUUGAUCCCGCGGCUGUAGAGGAUCGUUCCUUGCCGGGCUUUCGCUUGGUCAGGGUUGGCCCAUAGGUUGUCUGACAGGCA
........(.(......(...)......))......................................................(...).......................................................................................................................................
>ABIM01001008.1/15000-15216
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGUUCGUACCUCUGUUUCCUGGAGUUCGAAGGAGACAGGAUCUCAAGUCUGGCGGAUGAAUCGUGACCGUGUGAUCAGAGCGUGAUUAAUGGCAGAAGCGGUUCUCGAACCGUUGAUGCUGUAGAGGAUCGUUCUCAGUUGGGUUUGAUCCUGACUGGGGGUGGUCACCCGGUUAUCUGACAGACC
........(.(......(...)......)).........................................................(..)..............................................................................................................................
>AC189322.2/92619-92834
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAUUUCUAAGGAGACAGGCCCCUAAACCUGGUUGAUGAAUCAUAGCCGUGCGAUCUGAGUGUGAUUAACGGUUACGAUUCUCCUCGGAGUCUCUGCACUGUAGAGGAUCGCUAUCCGGUUAGGUUUGACCUCUCCGGGGUGGUCGCACGGUUGUCUGACAGGCC
........(.(......(...)......)).........................................................(..).............................................................................................................................
>AAAA02023191.1/14338-14116
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUUACCAAUAAGGAGGCAAGCACUCAAGUCUGGUUGAUGCGACAUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUGACUCCCGAUGCGGGCUCAUCCGACGGCUGUAGAGGAUCGUUCCUGCCUGGUUCACUCCAGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACA
........(.(......(...)......)).........................................................(..)....................................................................................................................................
>Z29641.1/759-982
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUCGUACUGUUGCAUCUUUGAUUAAUAAGAAGGCAAGUACUUAAACCUGGUUGAUGAGAAUUUGACCUGUGGGCCAGAGCGUGAUUUAACGGCCAGGACUUUGCCUUGGUGCAUUGUCUGGAGCUGCAGAUGAUCGUUCUUGGCCAGGCUUAAUGUCUGGCUAGGGUGGCCUACAGGCUGUUUGACAGGUU
........(.(......(...)......))..................................................(..)............................................................................................................................................
>ABEU01014426.1/8756-8528
ACGACUAUACUUGAACAGGAUCUGUUCUAUAGUGCGUACAUCUGAUCUGUGUUCUCCAACACAGACAAGACCUUCAACCCGGACGAUGAUUCAGGGCUCUCCGGCCUGAGCGCGAUUGCCGCGGCUGGUGCCAGUGGCCCCCUUGCGGGGGCCGGAGCCAGCCUGCCAGAUGAACGUCCCGCCUCCUCAUUCCUGGGGGCGGUGAUGGACGGAGAGCGUUCUGACGGGC
........(.(......(...)......)).......................................................(...)...........................................................................................................................................
>AL606444.3/140424-140208
ACGACCUUACUUGAACGGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUUAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUAACGGCCGGAUCACUGGCUGAUUUGAUCCCACGGCUGUAGAGGAUCGUUUCUUGCCGGGCCUCGCCUGGCCAGGAUGGCUCUCAGGUUCUCUGACAGGC
........(.(......(...)......))......................................................(...)................................................................................................................................
4 R(GAU)C
A(C(U))
(.GN.)
((R)U)C
 15 71.4
>AL606444.3/140424-140208
ACGACCUUACUUGAACGGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUUAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUAACGGCCGGAUCACUGGCUGAUUUGAUCCCACGGCUGUAGAGGAUCGUUUCUUGCCGGGCCUCGCCUGGCCAGGAUGGCUCUCAGGUUCUCUGACAGGC
........(.(......(...)......))......................................................(...).......................((...............................................).).....................................................
>AARH01001777.1/338669-338456
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUCGUACCUCUGUAUCCUUAAUCACUAAGGAGACAGGAACCUAAGCCUGGUUGAGGAAUUGUGACCGCUUGAUCAUAGCGUGAGUAAUGGCUUGAUUGUCCUCGUGAUCAUCAUGGCUGUAGAGGAUCGUUUCCUAGCCAUUUACCUGGCUGGGAAUGGUCUUGCGGUUGUCUGACAGGGU
........(.(......(...)......))...................................................(...)..........................((............................................).).....................................................
>AASG02024127.1/1647-1860
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUUAUCACAAAGGAGACAGGAACUCAAGUCUGGUGGAUGAAUCAUGACCGUGUGAUCAGAGCGUGAUUAACGGCUGGAGGAUCUUUCUGGGUUCUCAGGGCUGUAGAGGAUCGUACCUAGGCUGCCUAGCUGACUGGGAUGAUCGCAUGGUUGUCUGACAGACU
........(.(......(...)......)).........................................................(..).....................((.............................................).)....................................................
>X52629.1/325-543
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCAGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
........(.(......(...)......))......................................................(....)......................((..............................................).)........................................................
>AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
........(.(......(...)......))......................................................(....)......................((..............................................).)........................................................
>AAAA02023191.1/14338-14116
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUUACCAAUAAGGAGGCAAGCACUCAAGUCUGGUUGAUGCGACAUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUGACUCCCGAUGCGGGCUCAUCCGACGGCUGUAGAGGAUCGUUCCUGCCUGGUUCACUCCAGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACA
........(.(......(...)......)).........................................................(..).....................((....................................................).)......................................................
>FN594951.1/2080023-2080236
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAGUUCUAAGGAGACAGGAACCUCAGUCUGGUGGAUGAACAAUGACCGUGCGAUCAGAGCGUGAUUAACUGCUUAACCUGCUUUGUUGGGUCAGGGCUGUAGAGGAUCGUUCUCAGCCGAGCUUUGGCUCGACUGGGAUGGUCGCACGGUUGUCUGACAGAC
........(.(......(...)......)).......................................................(....).....................((...........................................).)......................................................
>AC189322.2/92619-92834
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAUUUCUAAGGAGACAGGCCCCUAAACCUGGUUGAUGAAUCAUAGCCGUGCGAUCUGAGUGUGAUUAACGGUUACGAUUCUCCUCGGAGUCUCUGCACUGUAGAGGAUCGCUAUCCGGUUAGGUUUGACCUCUCCGGGGUGGUCGCACGGUUGUCUGACAGGCC
........(.(......(...)......)).........................................................(..).....................((............................................).).......................................................
>X63065.1/858-1075
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGCUGCAUCCUUUACCAAUAAGGAGGCAAGCACUUCAGUCUGGUUGAUGCAUCUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUUCCCUUAUGGGGGCAAUCCACGGCUGUAGAGGAUCGUUCCUGCCUUGCUCAUGCUUGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACU
........(.(......(...)......)).........................................................(..)....................((................................................).)......................................................
>ABIM01001008.1/15000-15216
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGUUCGUACCUCUGUUUCCUGGAGUUCGAAGGAGACAGGAUCUCAAGUCUGGCGGAUGAAUCGUGACCGUGUGAUCAGAGCGUGAUUAAUGGCAGAAGCGGUUCUCGAACCGUUGAUGCUGUAGAGGAUCGUUCUCAGUUGGGUUUGAUCCUGACUGGGGGUGGUCACCCGGUUAUCUGACAGACC
........(.(......(...)......)).........................................................(..).....................((............................................).)........................................................
>X52630.1/529-746
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCUUAAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUUGGAUGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGUCGGGGUGGUCGCACGGCGGUCUGACAGGUU
........(.(......(...)......))......................................................(....)......................((..............................................).).......................................................
>AP004474.1/40162-40381
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACAACUGUAUCCUUGAGUUCUAAGGAGACAGGAACCAAAGUCUGGUUGAUGAACACUGACCGUGUGAUCAGAGCGUGAUUAAUAGUCGUCCGAUUGACCUUCGGGUUCAUCAGAUCGACGGUGGAGGAUCGUUCUCAGCGGGUAUCACCGGCUGGGGUGGUCACACGGUUGUCUGACAGGCU
........(.(......(...)......))......................................................(....)......................((...................................................).)....................................................
>AC144759.11/63139-62925
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUUGUACUACUGUGUCCUUGAUUUCUAAGGAGAUAGGAACAUAUGUCUGGUAGAUGAGUUGUGACCGUGUGAUCAGAGCGUGAUUAACGGCCAGGAUGAUGUGUGCAUCAUCUUCAGCUGUAGAUGAUCGUUCUUGGCCUAGUUCAACUAACCGGGAUGGUCACAUGGUUGUCUGACAGAUU
........(.(......(...)......)).........................................................(..).....................((.............................................).).....................................................
>X14411.1/488-704
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCAUUGUAUCCUUGAAUUCUAAGGAGACAGGAAUCCAAGUCUGGUUGAUGAAGCAUGGCCAUGUGACCAGAGCGUGAUUAACAGCUAUCCAUGGUUUCUCGAGCUGUGGUUACAGUAGAUGAUCGUUCUUAGACCCUUAAUCUCAGGCCUAAGAUGGUCUCAUGGCUGUCUGACAGAC
........(.(......(...)......)).........................................................(..).....................((..............................................).)......................................................
>AL606650.5/82385-82608
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUCAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUGACGGCCCGGAUCAUUUCCGUGUGAAUUGAUCCCGCGGCUGUAGAGGAUCGUUCCUUGCCGGGCUUUCGCUUGGUCAGGGUUGGCCCAUAGGUUGUCUGACAGGCA
........(.(......(...)......))......................................................(...).......................((...................................................).)........................................................
5 R(GAU)C
A(C(U))
(.GN.)
((R)U)C
((U)RG)A
 12 57.1
>AL606650.5/82385-82608
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUCAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUGACGGCCCGGAUCAUUUCCGUGUGAAUUGAUCCCGCGGCUGUAGAGGAUCGUUCCUUGCCGGGCUUUCGCUUGGUCAGGGUUGGCCCAUAGGUUGUCUGACAGGCA
........(.(......(...)......))......................................................(...).......................((...(.(.......................................)..)..).)........................................................
>AASG02024127.1/1647-1860
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUUAUCACAAAGGAGACAGGAACUCAAGUCUGGUGGAUGAAUCAUGACCGUGUGAUCAGAGCGUGAUUAACGGCUGGAGGAUCUUUCUGGGUUCUCAGGGCUGUAGAGGAUCGUACCUAGGCUGCCUAGCUGACUGGGAUGAUCGCAUGGUUGUCUGACAGACU
........(.(......(...)......)).........................................................(..).....................((...(.(.................................)..)..).)....................................................
>AL606444.3/140424-140208
ACGACCUUACUUGAACGGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUUAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUAACGGCCGGAUCACUGGCUGAUUUGAUCCCACGGCUGUAGAGGAUCGUUUCUUGCCGGGCCUCGCCUGGCCAGGAUGGCUCUCAGGUUCUCUGACAGGC
........(.(......(...)......))......................................................(...).......................((...(.(...................................)..)..).).....................................................
>X63065.1/858-1075
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGCUGCAUCCUUUACCAAUAAGGAGGCAAGCACUUCAGUCUGGUUGAUGCAUCUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUUCCCUUAUGGGGGCAAUCCACGGCUGUAGAGGAUCGUUCCUGCCUUGCUCAUGCUUGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACU
........(.(......(...)......)).........................................................(..)....................((...(.(....................................)..)..).)......................................................
>AC189322.2/92619-92834
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAUUUCUAAGGAGACAGGCCCCUAAACCUGGUUGAUGAAUCAUAGCCGUGCGAUCUGAGUGUGAUUAACGGUUACGAUUCUCCUCGGAGUCUCUGCACUGUAGAGGAUCGCUAUCCGGUUAGGUUUGACCUCUCCGGGGUGGUCGCACGGUUGUCUGACAGGCC
........(.(......(...)......)).........................................................(..).....................((...(.(................................)..)..).).......................................................
>X52629.1/325-543
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCAGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
........(.(......(...)......))......................................................(....)......................((...(.(..................................)..)..).)........................................................
>AC144759.11/63139-62925
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUUGUACUACUGUGUCCUUGAUUUCUAAGGAGAUAGGAACAUAUGUCUGGUAGAUGAGUUGUGACCGUGUGAUCAGAGCGUGAUUAACGGCCAGGAUGAUGUGUGCAUCAUCUUCAGCUGUAGAUGAUCGUUCUUGGCCUAGUUCAACUAACCGGGAUGGUCACAUGGUUGUCUGACAGAUU
........(.(......(...)......)).........................................................(..).....................((...(.(.................................)..)..).).....................................................
>FN594951.1/2080023-2080236
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAGUUCUAAGGAGACAGGAACCUCAGUCUGGUGGAUGAACAAUGACCGUGCGAUCAGAGCGUGAUUAACUGCUUAACCUGCUUUGUUGGGUCAGGGCUGUAGAGGAUCGUUCUCAGCCGAGCUUUGGCUCGACUGGGAUGGUCGCACGGUUGUCUGACAGAC
........(.(......(...)......)).......................................................(....).....................((...(.(...............................)..)..).)......................................................
>AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
........(.(......(...)......))......................................................(....)......................((...(.(..................................)..)..).)........................................................
>AP004474.1/40162-40381
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACAACUGUAUCCUUGAGUUCUAAGGAGACAGGAACCAAAGUCUGGUUGAUGAACACUGACCGUGUGAUCAGAGCGUGAUUAAUAGUCGUCCGAUUGACCUUCGGGUUCAUCAGAUCGACGGUGGAGGAUCGUUCUCAGCGGGUAUCACCGGCUGGGGUGGUCACACGGUUGUCUGACAGGCU
........(.(......(...)......))......................................................(....)......................((...(.(.......................................)..)..).)....................................................
>AAAA02023191.1/14338-14116
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUUACCAAUAAGGAGGCAAGCACUCAAGUCUGGUUGAUGCGACAUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUGACUCCCGAUGCGGGCUCAUCCGACGGCUGUAGAGGAUCGUUCCUGCCUGGUUCACUCCAGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACA
........(.(......(...)......)).........................................................(..).....................((...(.(........................................)..)..).)......................................................
>X52630.1/529-746
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCUUAAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUUGGAUGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGUCGGGGUGGUCGCACGGCGGUCUGACAGGUU
........(.(......(...)......))......................................................(....)......................((...(.(..................................)..)..).).......................................................
6 R(GAU)C
A(C(U))
(.GN.)
((R)U)C
((U)RG)A
A(G(A)())
 8 38.1
>X52630.1/529-746
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCUUAAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUUGGAUGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGUCGGGGUGGUCGCACGGCGGUCUGACAGGUU
........(.(......(...)......))......................................................(....).................(.(..((...(.(..................................)..)..).)..)(.........................))........................
>AC144759.11/63139-62925
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUUGUACUACUGUGUCCUUGAUUUCUAAGGAGAUAGGAACAUAUGUCUGGUAGAUGAGUUGUGACCGUGUGAUCAGAGCGUGAUUAACGGCCAGGAUGAUGUGUGCAUCAUCUUCAGCUGUAGAUGAUCGUUCUUGGCCUAGUUCAACUAACCGGGAUGGUCACAUGGUUGUCUGACAGAUU
........(.(......(...)......)).........................................................(..)................(.(..((...(.(.................................)..)..).).)(........................))........................
>AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
........(.(......(...)......))......................................................(....).................(.(..((...(.(..................................)..)..).)..).(........................).)........................
>X52629.1/325-543
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCAGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
........(.(......(...)......))......................................................(....).................(.(..((...(.(..................................)..)..).)..).(........................).)........................
>AP004474.1/40162-40381
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACAACUGUAUCCUUGAGUUCUAAGGAGACAGGAACCAAAGUCUGGUUGAUGAACACUGACCGUGUGAUCAGAGCGUGAUUAAUAGUCGUCCGAUUGACCUUCGGGUUCAUCAGAUCGACGGUGGAGGAUCGUUCUCAGCGGGUAUCACCGGCUGGGGUGGUCACACGGUUGUCUGACAGGCU
........(.(......(...)......))......................................................(....).................(.(..((...(.(.......................................)..)..).).)(.......................))........................
>AL606650.5/82385-82608
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUCAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUGACGGCCCGGAUCAUUUCCGUGUGAAUUGAUCCCGCGGCUGUAGAGGAUCGUUCCUUGCCGGGCUUUCGCUUGGUCAGGGUUGGCCCAUAGGUUGUCUGACAGGCA
........(.(......(...)......))......................................................(...)..................(.(..((...(.(.......................................)..)..).)..)(........................)..)........................
>X63065.1/858-1075
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGCUGCAUCCUUUACCAAUAAGGAGGCAAGCACUUCAGUCUGGUUGAUGCAUCUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUUCCCUUAUGGGGGCAAUCCACGGCUGUAGAGGAUCGUUCCUGCCUUGCUCAUGCUUGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACU
........(.(......(...)......)).........................................................(..)...............(.(..((...(.(....................................)..)..).)..)(........................))........................
>AAAA02023191.1/14338-14116
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUUACCAAUAAGGAGGCAAGCACUCAAGUCUGGUUGAUGCGACAUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUGACUCCCGAUGCGGGCUCAUCCGACGGCUGUAGAGGAUCGUUCCUGCCUGGUUCACUCCAGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACA
........(.(......(...)......)).........................................................(..)................(.(..((...(.(........................................)..)..).)..)(........................))........................

>X63065.1/858-1075
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGCUGCAUCCUUUACCAAUAAGGAGGCAAGCACUUCAGUCUGGUUGAUGCAUCUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUUCCCUUAUGGGGGCAAUCCACGGCUGUAGAGGAUCGUUCCUGCCUUGCUCAUGCUUGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACU
.................(...)....................................................................................................................................................................................................
........(.(......(...)......))............................................................................................................................................................................................
........(.(......(...)......)).........................................................(..)...............................................................................................................................
........(.(......(...)......)).........................................................(..)....................((................................................).)......................................................
........(.(......(...)......)).........................................................(..)....................((...(.(....................................)..)..).)......................................................
........(.(......(...)......)).........................................................(..)...............(.(..((...(.(....................................)..)..).)..)(........................))........................
>X52630.1/529-746
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCUUAAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUUGGAUGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUCUACCUUGUCGGGGUGGUCGCACGGCGGUCUGACAGGUU
.................(...)....................................................................................................................................................................................................
........(.(......(...)......))............................................................................................................................................................................................
........(.(......(...)......))......................................................(....)................................................................................................................................
........(.(......(...)......))......................................................(....)......................((..............................................).).......................................................
........(.(......(...)......))......................................................(....)......................((...(.(..................................)..)..).).......................................................
........(.(......(...)......))......................................................(....).................(.(..((...(.(..................................)..)..).)..)(.........................))........................
>AL606650.5/82385-82608
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUCAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUGACGGCCCGGAUCAUUUCCGUGUGAAUUGAUCCCGCGGCUGUAGAGGAUCGUUCCUUGCCGGGCUUUCGCUUGGUCAGGGUUGGCCCAUAGGUUGUCUGACAGGCA
.................(...)..........................................................................................................................................................................................................
........(.(......(...)......))..................................................................................................................................................................................................
........(.(......(...)......))......................................................(...).......................................................................................................................................
........(.(......(...)......))......................................................(...).......................((...................................................).)........................................................
........(.(......(...)......))......................................................(...).......................((...(.(.......................................)..)..).)........................................................
........(.(......(...)......))......................................................(...)..................(.(..((...(.(.......................................)..)..).)..)(........................)..)........................
>X52629.1/325-543
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCAGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
.................(...).....................................................................................................................................................................................................
........(.(......(...)......)).............................................................................................................................................................................................
........(.(......(...)......))......................................................(....).................................................................................................................................
........(.(......(...)......))......................................................(....)......................((..............................................).)........................................................
........(.(......(...)......))......................................................(....)......................((...(.(..................................)..)..).)........................................................
........(.(......(...)......))......................................................(....).................(.(..((...(.(..................................)..)..).)..).(........................).)........................
>AC144759.11/63139-62925
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUUGUACUACUGUGUCCUUGAUUUCUAAGGAGAUAGGAACAUAUGUCUGGUAGAUGAGUUGUGACCGUGUGAUCAGAGCGUGAUUAACGGCCAGGAUGAUGUGUGCAUCAUCUUCAGCUGUAGAUGAUCGUUCUUGGCCUAGUUCAACUAACCGGGAUGGUCACAUGGUUGUCUGACAGAUU
.................(...).................................................................................................................................................................................................
........(.(......(...)......)).........................................................................................................................................................................................
........(.(......(...)......)).........................................................(..)............................................................................................................................
........(.(......(...)......)).........................................................(..).....................((.............................................).).....................................................
........(.(......(...)......)).........................................................(..).....................((...(.(.................................)..)..).).....................................................
........(.(......(...)......)).........................................................(..)................(.(..((...(.(.................................)..)..).).)(........................))........................
>AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
.................(...).....................................................................................................................................................................................................
........(.(......(...)......)).............................................................................................................................................................................................
........(.(......(...)......))......................................................(....).................................................................................................................................
........(.(......(...)......))......................................................(....)......................((..............................................).)........................................................
........(.(......(...)......))......................................................(....)......................((...(.(..................................)..)..).)........................................................
........(.(......(...)......))......................................................(....).................(.(..((...(.(..................................)..)..).)..).(........................).)........................
>AAAA02023191.1/14338-14116
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUUACCAAUAAGGAGGCAAGCACUCAAGUCUGGUUGAUGCGACAUGACCUCUGGGCCAGAGCGUGAUUAACGGCCAGGAUGACUCCCGAUGCGGGCUCAUCCGACGGCUGUAGAGGAUCGUUCCUGCCUGGUUCACUCCAGUGCAGGGUGGCCCAGAGGUUGUCUGACAGACA
.................(...).........................................................................................................................................................................................................
........(.(......(...)......)).................................................................................................................................................................................................
........(.(......(...)......)).........................................................(..)....................................................................................................................................
........(.(......(...)......)).........................................................(..).....................((....................................................).)......................................................
........(.(......(...)......)).........................................................(..).....................((...(.(........................................)..)..).)......................................................
........(.(......(...)......)).........................................................(..)................(.(..((...(.(........................................)..)..).)..)(........................))........................
>AP004474.1/40162-40381
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACAACUGUAUCCUUGAGUUCUAAGGAGACAGGAACCAAAGUCUGGUUGAUGAACACUGACCGUGUGAUCAGAGCGUGAUUAAUAGUCGUCCGAUUGACCUUCGGGUUCAUCAGAUCGACGGUGGAGGAUCGUUCUCAGCGGGUAUCACCGGCUGGGGUGGUCACACGGUUGUCUGACAGGCU
.................(...)......................................................................................................................................................................................................
........(.(......(...)......))..............................................................................................................................................................................................
........(.(......(...)......))......................................................(....)..................................................................................................................................
........(.(......(...)......))......................................................(....)......................((...................................................).)....................................................
........(.(......(...)......))......................................................(....)......................((...(.(.......................................)..)..).)....................................................
........(.(......(...)......))......................................................(....).................(.(..((...(.(.......................................)..)..).).)(.......................))........................
>AC189322.2/92619-92834
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAUUUCUAAGGAGACAGGCCCCUAAACCUGGUUGAUGAAUCAUAGCCGUGCGAUCUGAGUGUGAUUAACGGUUACGAUUCUCCUCGGAGUCUCUGCACUGUAGAGGAUCGCUAUCCGGUUAGGUUUGACCUCUCCGGGGUGGUCGCACGGUUGUCUGACAGGCC
.................(...)..................................................................................................................................................................................................
........(.(......(...)......))..........................................................................................................................................................................................
........(.(......(...)......)).........................................................(..).............................................................................................................................
........(.(......(...)......)).........................................................(..).....................((............................................).).......................................................
........(.(......(...)......)).........................................................(..).....................((...(.(................................)..)..).).......................................................
>FN594951.1/2080023-2080236
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUGAGUUCUAAGGAGACAGGAACCUCAGUCUGGUGGAUGAACAAUGACCGUGCGAUCAGAGCGUGAUUAACUGCUUAACCUGCUUUGUUGGGUCAGGGCUGUAGAGGAUCGUUCUCAGCCGAGCUUUGGCUCGACUGGGAUGGUCGCACGGUUGUCUGACAGAC
.................(...)................................................................................................................................................................................................
........(.(......(...)......))........................................................................................................................................................................................
........(.(......(...)......)).......................................................(....)...........................................................................................................................
........(.(......(...)......)).......................................................(....).....................((...........................................).)......................................................
........(.(......(...)......)).......................................................(....).....................((...(.(...............................)..)..).)......................................................
>AASG02024127.1/1647-1860
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUAUCCUUUAUCACAAAGGAGACAGGAACUCAAGUCUGGUGGAUGAAUCAUGACCGUGUGAUCAGAGCGUGAUUAACGGCUGGAGGAUCUUUCUGGGUUCUCAGGGCUGUAGAGGAUCGUACCUAGGCUGCCUAGCUGACUGGGAUGAUCGCAUGGUUGUCUGACAGACU
.................(...)................................................................................................................................................................................................
........(.(......(...)......))........................................................................................................................................................................................
........(.(......(...)......)).........................................................(..)...........................................................................................................................
........(.(......(...)......)).........................................................(..).....................((.............................................).)....................................................
........(.(......(...)......)).........................................................(..).....................((...(.(.................................)..)..).)....................................................
>AL606444.3/140424-140208
ACGACCUUACUUGAACGGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUGACUAAUAAGGAGGCAAGCACUUAAGCUUGGUUGAUGACGCAUGACCUGUGGGCCAGAGCGUGAUUAACGGCCGGAUCACUGGCUGAUUUGAUCCCACGGCUGUAGAGGAUCGUUUCUUGCCGGGCCUCGCCUGGCCAGGAUGGCUCUCAGGUUCUCUGACAGGC
.................(...)...................................................................................................................................................................................................
........(.(......(...)......))...........................................................................................................................................................................................
........(.(......(...)......))......................................................(...)................................................................................................................................
........(.(......(...)......))......................................................(...).......................((...............................................).).....................................................
........(.(......(...)......))......................................................(...).......................((...(.(...................................)..)..).).....................................................
>X14411.1/488-704
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCAUUGUAUCCUUGAAUUCUAAGGAGACAGGAAUCCAAGUCUGGUUGAUGAAGCAUGGCCAUGUGACCAGAGCGUGAUUAACAGCUAUCCAUGGUUUCUCGAGCUGUGGUUACAGUAGAUGAUCGUUCUUAGACCCUUAAUCUCAGGCCUAAGAUGGUCUCAUGGCUGUCUGACAGAC
.................(...)...................................................................................................................................................................................................
........(.(......(...)......))...........................................................................................................................................................................................
........(.(......(...)......)).........................................................(..)..............................................................................................................................
........(.(......(...)......)).........................................................(..).....................((..............................................).)......................................................
>AARH01001777.1/338669-338456
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUCGUACCUCUGUAUCCUUAAUCACUAAGGAGACAGGAACCUAAGCCUGGUUGAGGAAUUGUGACCGCUUGAUCAUAGCGUGAGUAAUGGCUUGAUUGUCCUCGUGAUCAUCAUGGCUGUAGAGGAUCGUUUCCUAGCCAUUUACCUGGCUGGGAAUGGUCUUGCGGUUGUCUGACAGGGU
.................(...)................................................................................................................................................................................................
........(.(......(...)......))........................................................................................................................................................................................
........(.(......(...)......))...................................................(...)................................................................................................................................
........(.(......(...)......))...................................................(...)..........................((............................................).).....................................................
>ABIM01001008.1/15000-15216
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGUUCGUACCUCUGUUUCCUGGAGUUCGAAGGAGACAGGAUCUCAAGUCUGGCGGAUGAAUCGUGACCGUGUGAUCAGAGCGUGAUUAAUGGCAGAAGCGGUUCUCGAACCGUUGAUGCUGUAGAGGAUCGUUCUCAGUUGGGUUUGAUCCUGACUGGGGGUGGUCACCCGGUUAUCUGACAGACC
.................(...)...................................................................................................................................................................................................
........(.(......(...)......))...........................................................................................................................................................................................
........(.(......(...)......)).........................................................(..)..............................................................................................................................
........(.(......(...)......)).........................................................(..).....................((............................................).)........................................................
>AC225244.1/2684-2865
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACUGCCAGCAGGGUUGGACUUAUCGCCGGGGGCCCGGUUACCGUCACCUGGCGGUAACCGCGCAAAACCACGAUAAAUUUGCAAUUUGAAAUUUGAAUUCAAAAAUUCGGCAAACCGCGGUUACCGCGCGAUGUGUGACGGGCC
.................(...)................................................................................................................................................................
........(.(......(...)......))........................................................................................................................................................
........(.(......(...)......)).......................................................................................(..).............................................................
>Z29641.1/759-982
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGAUCGUACUGUUGCAUCUUUGAUUAAUAAGAAGGCAAGUACUUAAACCUGGUUGAUGAGAAUUUGACCUGUGGGCCAGAGCGUGAUUUAACGGCCAGGACUUUGCCUUGGUGCAUUGUCUGGAGCUGCAGAUGAUCGUUCUUGGCCAGGCUUAAUGUCUGGCUAGGGUGGCCUACAGGCUGUUUGACAGGUU
.................(...)..........................................................................................................................................................................................................
........(.(......(...)......))..................................................................................................................................................................................................
........(.(......(...)......))..................................................(..)............................................................................................................................................
>Z11883.1/3211-3429
ACGACCUUACUUGAACAAGAUCUGUUCUAUAGGCUCGUACCACUGUAUCGUUGACUUCUAAGGAGAUAGGAAACCAAGUCUGGUGGAUGAAUCGUGGUCAUGAAACUCGAGUGUGAUGAUUGUUCUUCAGGGCCUUUCGGGGUCAUUGUGUGCAGUAGAUGAUUGUUCUCAGCCUGGUUUGCCCGUCCCUGAGAUGGUCUCAUGGCAGUCUGACAGACU
.................(...).....................................................................................................................................................................................................
........(.(......(...)......)).............................................................................................................................................................................................
........(.(......(...)......))...........................................................................(....)............................................................................................................
>ABEU01014426.1/8756-8528
ACGACUAUACUUGAACAGGAUCUGUUCUAUAGUGCGUACAUCUGAUCUGUGUUCUCCAACACAGACAAGACCUUCAACCCGGACGAUGAUUCAGGGCUCUCCGGCCUGAGCGCGAUUGCCGCGGCUGGUGCCAGUGGCCCCCUUGCGGGGGCCGGAGCCAGCCUGCCAGAUGAACGUCCCGCCUCCUCAUUCCUGGGGGCGGUGAUGGACGGAGAGCGUUCUGACGGGC
.................(...)...............................................................................................................................................................................................................
........(.(......(...)......)).......................................................................................................................................................................................................
........(.(......(...)......)).......................................................(...)...........................................................................................................................................
>AJ001179.1/171-392
AUGACCGUACUUGAACAGGAUCUGUUCUAUAGGUCAUACACCUGUCUGUGUUCUUCAACUCAGACAAGUUCCUCAACCCAGACGAAGACAUGCAGCCCCGGCGCCUGAGCGCUACGUAUGACCACUGUGGCCGUGCCGCUGGCACGGACGCGUGGUUCUGGAUGAACGUCCCGCCGAGACCAUUCCACCGGCAGGGAUGGUGCUCGGGGCAUUCAGAUGGGU
.................(...)........................................................................................................................................................................................................
........(.(......(...)......))................................................................................................................................................................................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 R(GAU)C < 0.001 288
AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
...................................................................................................1...................................................................................................2...................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........
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2 A(C(U)) < 0.001 20.2
AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
...................................................................................................1...................................................................................................2...................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........
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3 (.GN.) < 0.001 1.17
AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
...................................................................................................1...................................................................................................2...................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........
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4 ((U)RG)A < 0.001 5.58
AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
...................................................................................................1...................................................................................................2...................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........
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5 ((R)U)C < 0.001 3.59
AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
...................................................................................................1...................................................................................................2...................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........
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6 A(G(A)()) 0.00151 13.1
AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
...................................................................................................1...................................................................................................2...................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........
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ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 R(GAU)C < 0.001 288
AB007644.1/28030-28248
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCUCUGUUUCCUUGAUUUCUCAAGAGACAGGCCCUUAACCCUGGUUGAUGAACCAUGACCGUGCGGCUAGAGCGUGAUUGACGGCUACGAUCGUCCUCGGACGCAUCCGGUGCUGUAGAGGAUCGUUACUCGGCUCGGUUUCUACCUUGCCGGGGUGGUCGCACGGCGGUCUGACAGGUC
...................................................................................................1...................................................................................................2...................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........
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NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).