D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

Coronavirus frameshifting stimulation element (Rfam: RF00507)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

(.NGCYC.)
G(RG(Y))
(.NY.)
((R)YN)U
(RG)

96.2
98.1
100.0
98.1
100.0

(.NGCYC.)
G(RG(Y))
((R)YN)U
(RG)

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 99.8 %
(± 0.144 %)

Decision tree:

5-fold cross-validation: 90.3 %
(± 5.59 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 94.1 %
(± 6.85 %)

of NC_026011.1/13485-13569

NC_026011.1/13485-13569

GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU
(..(((((((((((((((.........))))))))))))))))(((((((...))))))).((..))((((((..).))).)..)
.........1.........2.........3.........4.........5.........6.........7.........8.....
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345

abstract shape: `()()()`

					Number of sequences
	Structure	ORBs			(out of 52)	(%)
1		(.NGCYC.)			50	96.2
>NC_030292.1/12123-12201 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAACCCUGAUUGUGUUACCAGGGCCUUUGAUGU .................(......)...................................................... >NC_002306.3/12410-12488 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGUAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU ..................(.....)...................................................... >NC_017083.1/13520-13604 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCACCGGUCUUUCUACCGAUGUUCAAUUAAGGGCAUUUGAUAU .................(.........)......................................................... >NC_028833.1/11986-12064 GAGUACGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUUCCGAAACGGACCAUGUUGUGCGUGCUUUUGACAU ..................(.....)...................................................... >NC_003045.1/13342-13426 GGGUUCGGGGUACGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUACAAUUAAGGGCAUUUGAUAU ..................(........)......................................................... >NC_034972.1/12332-12401 GGGUGCGGGGCUCUAGUGAUGCUCAACUAGAGCCCUGUAGUGAGCAUCAUGUGAUAAGGGCUUUUGAUAU .................(......)............................................. >NC_006213.1/13341-13425 GGGUUCGGGGUACGAGUGUAGAUGCCCGUCUCGUACCCUGCGCCAGUGGUUUAUCUACUGAUGUACAAUUAAGGGCAUUUGAUAU ..................(........)......................................................... >NC_023760.1/12300-12378 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAGCCCUGAUUGUGUUACAAGGGCUUUUGAUGU .................(......)...................................................... >NC_035191.1/11208-11289 GGGCAAGGGGUUCUAGUGGAGCUCGACUAGAACCCUGUGGUAAUGGUACUGAACCUGAUGUAGUUGUAAGAGCUUUUGAUAU .................(......)......................................................... >NC_039207.1/13585-13669 GAGUCAGGGGUUCUAUUGUAGAUGCCCGAAUAGAACCCUGUGCAAGUGGUCUUGCCACUGAUGUCGUUUAUAGGGCAUUUGACAU .................(.........)......................................................... >NC_009019.1/13551-13635 GAGUCCGGGGUUCUAGUGUAAAUGCCCGACUAGAACCCUGUUCAAGUGGUCUAACCACUGAUGUCGUUUAUAGGGCAUUCGACAU .................(.........)......................................................... >NC_003436.1/12621-12699 GAGUACGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAUACACAACAUGUGUAUCGUGCUUUUGACAU ..................(.....)...................................................... >NC_009020.1/13686-13770 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCCAGUGGUCUUACCACUGAUGUUGUCUUUAGGGCAUUUGACAU .................(.........)......................................................... >NC_018871.1/12618-12696 GAGCAAGGGGCUCUAGUGCAGCUCAACUAGAGCCCUGCAAUGGCACUGACACUGAUCAUUGUGUCAGAGCAUUUGACAU .................(......)...................................................... >NC_010646.1/12389-12470 GGGUACGGGGUCUCAGUGAAGCUCGACUGAGGCCCUGUGCGUCGGGAUUGUUACCUGAUGUUGUUAAAAGAGCUUUUGAUCU .................(......)......................................................... >NC_038861.1/12339-12417 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGCAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU ..................(.....)...................................................... >NC_038294.1/13433-13517 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUUCAAGUGGUUUGUCCACUGAUGUCGUCUUUAGGGCAUUUGACAU .................(.........)......................................................... >NC_010438.1/12936-13014 GAGUGCGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCAGAACACGUAAUCCGUGCCUUUGACAU ..................(.....)...................................................... >AC_000192.1/13619-13703 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGAUAU .................(.........)......................................................... >NC_028811.1/12239-12317 GAGUGCGGGGCUCUAGUGAUGCUCGACUAGAGCCCCUAAAUGGCACUGACAUCGAUAGAUGUGUUCGUGCUUUUGAUGU .................(......)...................................................... >NC_005831.2/12440-12518 GAGCAAGGGGUUCUAGUGCAGCUCGACUAGAACCCUGCAAUGGCACGGACAUCGAUAAGUGUGUUCGUGCUUUUGACAU ..................(.....)...................................................... >NC_009657.1/12651-12729 GAGUGCGGGGCUCUAGUGCAGCUCGACUAGAGCCCUUAAAUGGUUCGGACACACAUCAUGUGUUCCGUGCUUUUGAUGU ..................(.....)...................................................... >NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU .................(.........)......................................................... >NC_025217.1/13932-14013 GGGUGCGCGGUGUAAGUGCAGCCCGUCUUACACCGUGUGGCAGUGGUCUUUCCACUGACGUCGUCGUAAGGGCUUUCGACCU ..................(.....)......................................................... >NC_016991.1/11350-11431 GAGUAAUGGGUUCUAGUGGUGCCCUGCUAGAACCCUUACAGCCUGGAUCUCAACCAGAUGCUGUUAAACGGGCAUUUCAUGU .................(......)......................................................... >NC_001451.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGAUGUGAUCCUGAUGUUGUAAAGCGAGCCUUUGAUGU .................(......)......................................................... >NC_032107.1/12473-12551 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGCACGGACAUAGAUAAGUGUGUUCGUGCUUUUGAUAU ..................(.....)...................................................... >NC_002645.1/12521-12599 GAGUCCGGGGCUCUAGUGCCGCUCGACUAGAGCCCUGUAAUGGUACAGACAUAGAUUACUGUGUCCGUGCAUUUGACGU ..................(.....)...................................................... >NC_016996.1/11062-11143 GAGUAAAGGGUUCUAGUGAUGCCCGUCUAGAACCCCAACAGUCUGGCACUCAGCCGGAUAUUGUAAAAAGGGCGUUUCAUGU .................(......)......................................................... >NC_001846.1/13602-13686 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGACAU ..................(........)......................................................... >NC_028814.1/12204-12282 GAGCAAGGGGCUCUAGUGCAGCUCAACUAGAGCCCUGUAAUGGUACUGACACUGAUCACUGUGUCCGAGCCUUCGACAU .................(......)...................................................... >NC_022103.1/12533-12611 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGCACUGAUACUGAUCAUGUGUAUCGUGCUUUUGAUAU ..................(.....)...................................................... >NC_011550.1/11593-11674 GAGUAGUGGGUUCCAGUGAAGCCCGACUGGAACCCCAACAGCCAGGUACAAUCCCUGAUGCUGUUAAACGGGCUUUUCAUGU .................(......)......................................................... >NC_016992.1/11425-11506 GAGUAACGGGUUCUAGUGAUGCCCGGCUAGAACCCCUGCAGCCUGGUACUCAGCCAGAUGCUGUAAAAAGGGCCUUCCAUGU .................(......)......................................................... >NC_016994.1/11312-11393 GAGUAAAGGGUUCUAGUGAUGCCCGCCUAGAACCCUGCACUAGCGACAACCGACCCGAUGUCGUCGUUAGGGCGUUUAACAU ..................(.....)......................................................... >NC_039208.1/11408-11489 GAGUAACGGGUUCUAGUGACGCCCGGCUAGAACCCCUGCAGCCUGGAACUCAACCAGAUGCUGUAAAAAGGGCCUUCCAUGU .................(......)......................................................... >NC_014470.1/13298-13379 GGGUUUGCGGUGUAAGUGCGGCCCGUCUUACACCGUGCGGCACAGGCACAAGCACUGAUGUCGUUUACAGGGCUUUUGAUAU ..................(.....)......................................................... >NC_011549.1/11404-11485 GAGUAACGGGGUCUAGUGGUGCCCGCCUAGAACCCCUACAACAUGGUGUUACACCAGAUGUUGUACAAAGGGCUUUUCAUGU ..................(.....)......................................................... >NC_010800.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGGUGUGACCCUGAUGUUGUAAAGCGAGCCUUUGAUGU .................(......)......................................................... >NC_010437.1/13049-13127 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCGGAGCAUGUUGUACGCGCCUUUGAUAU ..................(.....)...................................................... >NC_028824.1/12252-12330 GGGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCAGAACAUUGUGUUCGUGCUUUUGACGU ..................(.....)...................................................... >NC_016993.1/11435-11516 GAGUAACGGGGUCCAGUGGCGCCCGCCUGGAACCCCAGCAGCCAGGUACAACCCCUGAUGCUGUAAAAAGGGCAUUUCAUGU ..................(.....)......................................................... >NC_028752.1/12536-12614 GAGUCAGGGGCUCUAGUGCCGCUCGACUAGAGCCCUGCAAUGGUACAGACAUAGAUUAUUGUGUCCGUGCAUUUGACGU ..................(.....)...................................................... >NC_011547.1/11353-11434 GAGUAACGGGUUCUAGUGGUGCCCGACUAGAACCCCAACAGCCAGGCGUUACACCUGAUGCUGUUAAACGGGCAUUUCAUGU .................(......)......................................................... >NC_006577.2/13601-13685 GGGUUCGGGGUACUAGUGUGAAUGCCCGGCUAGUACCCUGUGCUAGUGGUUUAUCUACUGAUGUUCAAUUAAGGGCAUUUGACAU .................(.........)......................................................... >NC_034440.1/13207-13291 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCAAGUGGUUUGUCCACUGAUGUCGUUUUUAGGGCAUUUGACAU .................(.........)......................................................... >NC_016995.1/10923-11004 GAGUGAAGGGUUCAAGUGGUGCCCGCCUUGAACCCAUGCGGCCUGGUGCUCAACCUGACCCGCUCGUAAGGGCAUUUCAUGU ..................(.....)......................................................... >NC_004718.3/13399-13480 GGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUCUACAGGGCUUUUGAUAU ..................(.....)......................................................... >NC_045512.2/13469-13550 GGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUAUACAGGGCUUUUGACAU ..................(.....)......................................................... >NC_032730.1/12539-12608 GGGUGCGGGGCUCUAGUGAUGCUCAACUAGAGCCCUGUAGUGAACAUCAUGUUGUAAGAGCUUUUGAUAU .................(......).............................................
2		(.NGCYC.) G(RG(Y))			40	76.9
>NC_003436.1/12621-12699 GAGUACGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAUACACAACAUGUGUAUCGUGCUUUUGACAU (..(..............(.....).............))....................................... >NC_017083.1/13520-13604 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCACCGGUCUUUCUACCGAUGUUCAAUUAAGGGCAUUUGAUAU (..(.............(.........).............)).......................................... >NC_035191.1/11208-11289 GGGCAAGGGGUUCUAGUGGAGCUCGACUAGAACCCUGUGGUAAUGGUACUGAACCUGAUGUAGUUGUAAGAGCUUUUGAUAU (..(.............(......).............)).......................................... >NC_028811.1/12239-12317 GAGUGCGGGGCUCUAGUGAUGCUCGACUAGAGCCCCUAAAUGGCACUGACAUCGAUAGAUGUGUUCGUGCUUUUGAUGU (..(.............(......).............))....................................... >NC_002645.1/12521-12599 GAGUCCGGGGCUCUAGUGCCGCUCGACUAGAGCCCUGUAAUGGUACAGACAUAGAUUACUGUGUCCGUGCAUUUGACGU (..(..............(.....).............).)...................................... >NC_023760.1/12300-12378 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAGCCCUGAUUGUGUUACAAGGGCUUUUGAUGU (..(.............(......).............))....................................... >NC_034972.1/12332-12401 GGGUGCGGGGCUCUAGUGAUGCUCAACUAGAGCCCUGUAGUGAGCAUCAUGUGAUAAGGGCUUUUGAUAU (..(.............(......).............)).............................. >NC_002306.3/12410-12488 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGUAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU (..(..............(.....).............))....................................... >NC_039207.1/13585-13669 GAGUCAGGGGUUCUAUUGUAGAUGCCCGAAUAGAACCCUGUGCAAGUGGUCUUGCCACUGAUGUCGUUUAUAGGGCAUUUGACAU (..(.............(.........).............)).......................................... >NC_022103.1/12533-12611 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGCACUGAUACUGAUCAUGUGUAUCGUGCUUUUGAUAU (..(..............(.....).............).)...................................... >NC_032107.1/12473-12551 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGCACGGACAUAGAUAAGUGUGUUCGUGCUUUUGAUAU (..(..............(.....).............).)...................................... >NC_001846.1/13602-13686 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGACAU (..(..............(........).............)).......................................... >NC_025217.1/13932-14013 GGGUGCGCGGUGUAAGUGCAGCCCGUCUUACACCGUGUGGCAGUGGUCUUUCCACUGACGUCGUCGUAAGGGCUUUCGACCU (..(..............(.....).............)).......................................... >NC_028833.1/11986-12064 GAGUACGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUUCCGAAACGGACCAUGUUGUGCGUGCUUUUGACAU (..(..............(.....).............))....................................... >NC_006213.1/13341-13425 GGGUUCGGGGUACGAGUGUAGAUGCCCGUCUCGUACCCUGCGCCAGUGGUUUAUCUACUGAUGUACAAUUAAGGGCAUUUGAUAU (..(..............(........).............)).......................................... >NC_001451.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGAUGUGAUCCUGAUGUUGUAAAGCGAGCCUUUGAUGU (..(.............(......).............)).......................................... >NC_016996.1/11062-11143 GAGUAAAGGGUUCUAGUGAUGCCCGUCUAGAACCCCAACAGUCUGGCACUCAGCCGGAUAUUGUAAAAAGGGCGUUUCAUGU (..(.............(......).............)).......................................... >NC_010800.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGGUGUGACCCUGAUGUUGUAAAGCGAGCCUUUGAUGU (..(.............(......).............)).......................................... >NC_006577.2/13601-13685 GGGUUCGGGGUACUAGUGUGAAUGCCCGGCUAGUACCCUGUGCUAGUGGUUUAUCUACUGAUGUUCAAUUAAGGGCAUUUGACAU (..(.............(.........).............)).......................................... >NC_010437.1/13049-13127 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCGGAGCAUGUUGUACGCGCCUUUGAUAU (..(..............(.....).............))....................................... >NC_016992.1/11425-11506 GAGUAACGGGUUCUAGUGAUGCCCGGCUAGAACCCCUGCAGCCUGGUACUCAGCCAGAUGCUGUAAAAAGGGCCUUCCAUGU (..(.............(......).............)).......................................... >NC_032730.1/12539-12608 GGGUGCGGGGCUCUAGUGAUGCUCAACUAGAGCCCUGUAGUGAACAUCAUGUUGUAAGAGCUUUUGAUAU (..(.............(......).............)).............................. >NC_034440.1/13207-13291 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCAAGUGGUUUGUCCACUGAUGUCGUUUUUAGGGCAUUUGACAU (..(.............(.........).............)).......................................... >NC_014470.1/13298-13379 GGGUUUGCGGUGUAAGUGCGGCCCGUCUUACACCGUGCGGCACAGGCACAAGCACUGAUGUCGUUUACAGGGCUUUUGAUAU (..(..............(.....).............).)......................................... >AC_000192.1/13619-13703 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGAUAU (..(.............(.........).............)).......................................... >NC_009019.1/13551-13635 GAGUCCGGGGUUCUAGUGUAAAUGCCCGACUAGAACCCUGUUCAAGUGGUCUAACCACUGAUGUCGUUUAUAGGGCAUUCGACAU (..(.............(.........).............)).......................................... >NC_010646.1/12389-12470 GGGUACGGGGUCUCAGUGAAGCUCGACUGAGGCCCUGUGCGUCGGGAUUGUUACCUGAUGUUGUUAAAAGAGCUUUUGAUCU (..(.............(......).............)).......................................... >NC_009020.1/13686-13770 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCCAGUGGUCUUACCACUGAUGUUGUCUUUAGGGCAUUUGACAU (..(.............(.........).............)).......................................... >NC_011547.1/11353-11434 GAGUAACGGGUUCUAGUGGUGCCCGACUAGAACCCCAACAGCCAGGCGUUACACCUGAUGCUGUUAAACGGGCAUUUCAUGU (..(.............(......).............)).......................................... >NC_030292.1/12123-12201 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAACCCUGAUUGUGUUACCAGGGCCUUUGAUGU (..(.............(......).............))....................................... >NC_016993.1/11435-11516 GAGUAACGGGGUCCAGUGGCGCCCGCCUGGAACCCCAGCAGCCAGGUACAACCCCUGAUGCUGUAAAAAGGGCAUUUCAUGU (..(..............(.....).............)).......................................... >NC_003045.1/13342-13426 GGGUUCGGGGUACGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUACAAUUAAGGGCAUUUGAUAU (..(..............(........).............)).......................................... >NC_028752.1/12536-12614 GAGUCAGGGGCUCUAGUGCCGCUCGACUAGAGCCCUGCAAUGGUACAGACAUAGAUUAUUGUGUCCGUGCAUUUGACGU (..(..............(.....).............).)...................................... >NC_028814.1/12204-12282 GAGCAAGGGGCUCUAGUGCAGCUCAACUAGAGCCCUGUAAUGGUACUGACACUGAUCACUGUGUCCGAGCCUUCGACAU (..(.............(......).............))....................................... >NC_038861.1/12339-12417 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGCAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU (..(..............(.....).............))....................................... >NC_045512.2/13469-13550 GGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUAUACAGGGCUUUUGACAU (..(..............(.....).............).)......................................... >NC_009657.1/12651-12729 GAGUGCGGGGCUCUAGUGCAGCUCGACUAGAGCCCUUAAAUGGUUCGGACACACAUCAUGUGUUCCGUGCUUUUGAUGU (..(..............(.....).............))....................................... >NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU (..(.............(.........).............)).......................................... >NC_010438.1/12936-13014 GAGUGCGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCAGAACACGUAAUCCGUGCCUUUGACAU (..(..............(.....).............))....................................... >NC_038294.1/13433-13517 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUUCAAGUGGUUUGUCCACUGAUGUCGUCUUUAGGGCAUUUGACAU (..(.............(.........).............))..........................................
3		(.NGCYC.) G(RG(Y)) (.NY.)			33	63.5
>NC_009019.1/13551-13635 GAGUCCGGGGUUCUAGUGUAAAUGCCCGACUAGAACCCUGUUCAAGUGGUCUAACCACUGAUGUCGUUUAUAGGGCAUUCGACAU (..(.............(.........).............))......(...)............................... >NC_002306.3/12410-12488 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGUAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU (..(..............(.....).............))........(..)........................... >NC_032107.1/12473-12551 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGCACGGACAUAGAUAAGUGUGUUCGUGCUUUUGAUAU (..(..............(.....).............).)..........(........).................. >NC_025217.1/13932-14013 GGGUGCGCGGUGUAAGUGCAGCCCGUCUUACACCGUGUGGCAGUGGUCUUUCCACUGACGUCGUCGUAAGGGCUUUCGACCU (..(..............(.....).............))........(..).............................. >NC_032730.1/12539-12608 GGGUGCGGGGCUCUAGUGAUGCUCAACUAGAGCCCUGUAGUGAACAUCAUGUUGUAAGAGCUUUUGAUAU (..(.............(......).............))........(...)................. >NC_034440.1/13207-13291 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCAAGUGGUUUGUCCACUGAUGUCGUUUUUAGGGCAUUUGACAU (..(.............(.........).............))......(...)............................... >NC_016993.1/11435-11516 GAGUAACGGGGUCCAGUGGCGCCCGCCUGGAACCCCAGCAGCCAGGUACAACCCCUGAUGCUGUAAAAAGGGCAUUUCAUGU (..(..............(.....).............)).......(....)............................. >NC_001846.1/13602-13686 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGACAU (..(..............(........).............))......(...)............................... >NC_009020.1/13686-13770 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCCAGUGGUCUUACCACUGAUGUUGUCUUUAGGGCAUUUGACAU (..(.............(.........).............)).......(..)............................... >NC_038294.1/13433-13517 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUUCAAGUGGUUUGUCCACUGAUGUCGUCUUUAGGGCAUUUGACAU (..(.............(.........).............))......(...)............................... >NC_010800.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGGUGUGACCCUGAUGUUGUAAAGCGAGCCUUUGAUGU (..(.............(......).............))........(....)............................ >NC_039207.1/13585-13669 GAGUCAGGGGUUCUAUUGUAGAUGCCCGAAUAGAACCCUGUGCAAGUGGUCUUGCCACUGAUGUCGUUUAUAGGGCAUUUGACAU (..(.............(.........).............)).......(..)............................... >NC_028833.1/11986-12064 GAGUACGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUUCCGAAACGGACCAUGUUGUGCGUGCUUUUGACAU (..(..............(.....).............))......(.....).......................... >NC_030292.1/12123-12201 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAACCCUGAUUGUGUUACCAGGGCCUUUGAUGU (..(.............(......).............))........(.....)........................ >NC_017083.1/13520-13604 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCACCGGUCUUUCUACCGAUGUUCAAUUAAGGGCAUUUGAUAU (..(.............(.........).............))........(..).............................. >NC_003436.1/12621-12699 GAGUACGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAUACACAACAUGUGUAUCGUGCUUUUGACAU (..(..............(.....).............)).......(...)........................... >NC_006213.1/13341-13425 GGGUUCGGGGUACGAGUGUAGAUGCCCGUCUCGUACCCUGCGCCAGUGGUUUAUCUACUGAUGUACAAUUAAGGGCAUUUGAUAU (..(..............(........).............)).........(.....).......................... >NC_028752.1/12536-12614 GAGUCAGGGGCUCUAGUGCCGCUCGACUAGAGCCCUGCAAUGGUACAGACAUAGAUUAUUGUGUCCGUGCAUUUGACGU (..(..............(.....).............).)......(..)............................ >AC_000192.1/13619-13703 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGAUAU (..(.............(.........).............)).........(....)........................... >NC_022103.1/12533-12611 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGCACUGAUACUGAUCAUGUGUAUCGUGCUUUUGAUAU (..(..............(.....).............).)........(....)........................ >NC_006577.2/13601-13685 GGGUUCGGGGUACUAGUGUGAAUGCCCGGCUAGUACCCUGUGCUAGUGGUUUAUCUACUGAUGUUCAAUUAAGGGCAUUUGACAU (..(.............(.........).............))........(..).............................. >NC_001451.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGAUGUGAUCCUGAUGUUGUAAAGCGAGCCUUUGAUGU (..(.............(......).............))........(....)............................ >NC_010438.1/12936-13014 GAGUGCGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCAGAACACGUAAUCCGUGCCUUUGACAU (..(..............(.....).............))........(......)....................... >NC_035191.1/11208-11289 GGGCAAGGGGUUCUAGUGGAGCUCGACUAGAACCCUGUGGUAAUGGUACUGAACCUGAUGUAGUUGUAAGAGCUUUUGAUAU (..(.............(......).............))........(.....)........................... >NC_010437.1/13049-13127 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCGGAGCAUGUUGUACGCGCCUUUGAUAU (..(..............(.....).............))........(...).......................... >NC_038861.1/12339-12417 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGCAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU (..(..............(.....).............))........(..)........................... >NC_034972.1/12332-12401 GGGUGCGGGGCUCUAGUGAUGCUCAACUAGAGCCCUGUAGUGAGCAUCAUGUGAUAAGGGCUUUUGAUAU (..(.............(......).............)).......(....)................. >NC_023760.1/12300-12378 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAGCCCUGAUUGUGUUACAAGGGCUUUUGAUGU (..(.............(......).............))........(..)........................... >NC_045512.2/13469-13550 GGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUAUACAGGGCUUUUGACAU (..(..............(.....).............).).........(....).......................... >NC_010646.1/12389-12470 GGGUACGGGGUCUCAGUGAAGCUCGACUGAGGCCCUGUGCGUCGGGAUUGUUACCUGAUGUUGUUAAAAGAGCUUUUGAUCU (..(.............(......).............))........(..).............................. >NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU (..(.............(.........).............))........(..).............................. >NC_016996.1/11062-11143 GAGUAAAGGGUUCUAGUGAUGCCCGUCUAGAACCCCAACAGUCUGGCACUCAGCCGGAUAUUGUAAAAAGGGCGUUUCAUGU (..(.............(......).............))........(..).............................. >NC_003045.1/13342-13426 GGGUUCGGGGUACGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUACAAUUAAGGGCAUUUGAUAU (..(..............(........).............))........(..)..............................
4		(.NGCYC.) G(RG(Y)) (.NY.) ((R)YN)U			30	57.7
>NC_034972.1/12332-12401 GGGUGCGGGGCUCUAGUGAUGCUCAACUAGAGCCCUGUAGUGAGCAUCAUGUGAUAAGGGCUUUUGAUAU (..(.............(......).............)).......(....).....((......)..) >NC_009020.1/13686-13770 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCCAGUGGUCUUACCACUGAUGUUGUCUUUAGGGCAUUUGACAU (..(.............(.........).............)).......(..)...........((.........)..)..... >NC_010646.1/12389-12470 GGGUACGGGGUCUCAGUGAAGCUCGACUGAGGCCCUGUGCGUCGGGAUUGUUACCUGAUGUUGUUAAAAGAGCUUUUGAUCU (..(.............(......).............))........(..)..........((..............)..) >AC_000192.1/13619-13703 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGAUAU (..(.............(.........).............)).........(....).........((............)..) >NC_001846.1/13602-13686 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGACAU (..(..............(........).............))......(...).............((.....)..)....... >NC_022103.1/12533-12611 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGCACUGAUACUGAUCAUGUGUAUCGUGCUUUUGAUAU (..(..............(.....).............).)........(....)........((..........)..) >NC_045512.2/13469-13550 GGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUAUACAGGGCUUUUGACAU (..(..............(.....).............).).........(....)........((.....)..)....... >NC_010437.1/13049-13127 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCGGAGCAUGUUGUACGCGCCUUUGAUAU (..(..............(.....).............))........(...).............(.(......)..) >NC_009019.1/13551-13635 GAGUCCGGGGUUCUAGUGUAAAUGCCCGACUAGAACCCUGUUCAAGUGGUCUAACCACUGAUGUCGUUUAUAGGGCAUUCGACAU (..(.............(.........).............))......(...).............((.....)..)....... >NC_023760.1/12300-12378 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAGCCCUGAUUGUGUUACAAGGGCUUUUGAUGU (..(.............(......).............))........(..).............(..(......)..) >NC_038294.1/13433-13517 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUUCAAGUGGUUUGUCCACUGAUGUCGUCUUUAGGGCAUUUGACAU (..(.............(.........).............))......(...)...........((.........)..)..... >NC_032730.1/12539-12608 GGGUGCGGGGCUCUAGUGAUGCUCAACUAGAGCCCUGUAGUGAACAUCAUGUUGUAAGAGCUUUUGAUAU (..(.............(......).............))........(...).....((......)..) >NC_035191.1/11208-11289 GGGCAAGGGGUUCUAGUGGAGCUCGACUAGAACCCUGUGGUAAUGGUACUGAACCUGAUGUAGUUGUAAGAGCUUUUGAUAU (..(.............(......).............))........(.....).............(..(......)..) >NC_003436.1/12621-12699 GAGUACGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAUACACAACAUGUGUAUCGUGCUUUUGACAU (..(..............(.....).............)).......(...)................(.(....)..) >NC_010800.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGGUGUGACCCUGAUGUUGUAAAGCGAGCCUUUGAUGU (..(.............(......).............))........(....)......(.(...............)..) >NC_039207.1/13585-13669 GAGUCAGGGGUUCUAUUGUAGAUGCCCGAAUAGAACCCUGUGCAAGUGGUCUUGCCACUGAUGUCGUUUAUAGGGCAUUUGACAU (..(.............(.........).............)).......(..)...........((.........)..)..... >NC_034440.1/13207-13291 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCAAGUGGUUUGUCCACUGAUGUCGUUUUUAGGGCAUUUGACAU (..(.............(.........).............))......(...)...........((.........)..)..... >NC_025217.1/13932-14013 GGGUGCGCGGUGUAAGUGCAGCCCGUCUUACACCGUGUGGCAGUGGUCUUUCCACUGACGUCGUCGUAAGGGCUUUCGACCU (..(..............(.....).............))........(..)..........((..............)..) >NC_001451.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGAUGUGAUCCUGAUGUUGUAAAGCGAGCCUUUGAUGU (..(.............(......).............))........(....).....(..(...............)..) >NC_028833.1/11986-12064 GAGUACGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUUCCGAAACGGACCAUGUUGUGCGUGCUUUUGACAU (..(..............(.....).............))......(.....)...........((..)..)....... >NC_006577.2/13601-13685 GGGUUCGGGGUACUAGUGUGAAUGCCCGGCUAGUACCCUGUGCUAGUGGUUUAUCUACUGAUGUUCAAUUAAGGGCAUUUGACAU (..(.............(.........).............))........(..)...........(..(......)..)..... >NC_030292.1/12123-12201 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAACCCUGAUUGUGUUACCAGGGCCUUUGAUGU (..(.............(......).............))........(.....)...........((.......)..) >NC_010438.1/12936-13014 GAGUGCGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCAGAACACGUAAUCCGUGCCUUUGACAU (..(..............(.....).............))........(......)..............((...)..) >NC_003045.1/13342-13426 GGGUUCGGGGUACGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUACAAUUAAGGGCAUUUGAUAU (..(..............(........).............))........(..)............(.(...........)..) >NC_017083.1/13520-13604 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCACCGGUCUUUCUACCGAUGUUCAAUUAAGGGCAUUUGAUAU (..(.............(.........).............))........(..)............(.(...........)..) >NC_006213.1/13341-13425 GGGUUCGGGGUACGAGUGUAGAUGCCCGUCUCGUACCCUGCGCCAGUGGUUUAUCUACUGAUGUACAAUUAAGGGCAUUUGAUAU (..(..............(........).............)).........(.....).........((...........)..) >NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU (..(.............(.........).............))........(..)............(.(...........)..) >NC_016993.1/11435-11516 GAGUAACGGGGUCCAGUGGCGCCCGCCUGGAACCCCAGCAGCCAGGUACAACCCCUGAUGCUGUAAAAAGGGCAUUUCAUGU (..(..............(.....).............)).......(....)...........(.(...........)..) >NC_002306.3/12410-12488 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGUAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU (..(..............(.....).............))........(..).......((..............)..) >NC_038861.1/12339-12417 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGCAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU (..(..............(.....).............))........(..).......((..............)..)
5		(.NGCYC.) G(RG(Y)) (.NY.) ((R)YN)U (RG)			19	36.5
>NC_023760.1/12300-12378 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAGCCCUGAUUGUGUUACAAGGGCUUUUGAUGU (..(.............(......).............)).........(...).....((.....(..).....)..) >NC_034440.1/13207-13291 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCAAGUGGUUUGUCCACUGAUGUCGUUUUUAGGGCAUUUGACAU (..(.............(.........).............))......(...)...........((...(..)..)..)..... >AC_000192.1/13619-13703 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGAUAU (..(.............(.........).............)).........(....).........((...(..).....)..) >NC_009019.1/13551-13635 GAGUCCGGGGUUCUAGUGUAAAUGCCCGACUAGAACCCUGUUCAAGUGGUCUAACCACUGAUGUCGUUUAUAGGGCAUUCGACAU (..(.............(.........).............))......(...).............((.(..))..)....... >NC_025217.1/13932-14013 GGGUGCGCGGUGUAAGUGCAGCCCGUCUUACACCGUGUGGCAGUGGUCUUUCCACUGACGUCGUCGUAAGGGCUUUCGACCU (..(..............(.....).............))........(..)..........((.....(..).....)..) >NC_016993.1/11435-11516 GAGUAACGGGGUCCAGUGGCGCCCGCCUGGAACCCCAGCAGCCAGGUACAACCCCUGAUGCUGUAAAAAGGGCAUUUCAUGU (..(..............(.....).............)).......(....)...........(.(..(..).....)..) >NC_001846.1/13602-13686 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGACAU (..(..............(........).............))......(...)..............(((..))..)....... >NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU (..(.............(.........).............))........(..)............(.(..(..).....)..) >NC_017083.1/13520-13604 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCACCGGUCUUUCUACCGAUGUUCAAUUAAGGGCAUUUGAUAU (..(.............(.........).............))........(..)............(.(..(..).....)..) >NC_010800.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGGUGUGACCCUGAUGUUGUAAAGCGAGCCUUUGAUGU (..(.............(......).............))........(....)......(.(......(..).....)..) >NC_010646.1/12389-12470 GGGUACGGGGUCUCAGUGAAGCUCGACUGAGGCCCUGUGCGUCGGGAUUGUUACCUGAUGUUGUUAAAAGAGCUUUUGAUCU (..(.............(......).............))........(..)..........((.....(..).....)..) >NC_002306.3/12410-12488 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGUAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU (..(..............(.....).............))........(..).......((.....(..).....)..) >NC_039207.1/13585-13669 GAGUCAGGGGUUCUAUUGUAGAUGCCCGAAUAGAACCCUGUGCAAGUGGUCUUGCCACUGAUGUCGUUUAUAGGGCAUUUGACAU (..(.............(.........).............)).......(..)...........((...(..)..)..)..... >NC_009020.1/13686-13770 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCCAGUGGUCUUACCACUGAUGUUGUCUUUAGGGCAUUUGACAU (..(.............(.........).............))......(...)...........((...(..)..)..)..... >NC_006577.2/13601-13685 GGGUUCGGGGUACUAGUGUGAAUGCCCGGCUAGUACCCUGUGCUAGUGGUUUAUCUACUGAUGUUCAAUUAAGGGCAUUUGACAU (..(.............(.........).............))........(..)...........(..((..)..)..)..... >NC_001451.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGAUGUGAUCCUGAUGUUGUAAAGCGAGCCUUUGAUGU (..(.............(......).............))........(....).....(..(......(..).....)..) >NC_038861.1/12339-12417 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGCAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU (..(..............(.....).............))........(..).......((.....(..).....)..) >NC_038294.1/13433-13517 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUUCAAGUGGUUUGUCCACUGAUGUCGUCUUUAGGGCAUUUGACAU (..(.............(.........).............))......(...)...........((...(..)..)..)..... >NC_045512.2/13469-13550 GGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUAUACAGGGCUUUUGACAU (..(..............(.....).............).).........(....)........((.(..))..).......

>NC_002306.3/12410-12488 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGUAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU ..................(.....)...................................................... (..(..............(.....).............))....................................... (..(..............(.....).............))........(..)........................... (..(..............(.....).............))........(..).......((..............)..) (..(..............(.....).............))........(..).......((.....(..).....)..) >NC_017083.1/13520-13604 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCACCGGUCUUUCUACCGAUGUUCAAUUAAGGGCAUUUGAUAU .................(.........)......................................................... (..(.............(.........).............)).......................................... (..(.............(.........).............))........(..).............................. (..(.............(.........).............))........(..)............(.(...........)..) (..(.............(.........).............))........(..)............(.(..(..).....)..) >NC_023760.1/12300-12378 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAGCCCUGAUUGUGUUACAAGGGCUUUUGAUGU .................(......)...................................................... (..(.............(......).............))....................................... (..(.............(......).............))........(..)........................... (..(.............(......).............))........(..).............(..(......)..) (..(.............(......).............)).........(...).....((.....(..).....)..) >NC_039207.1/13585-13669 GAGUCAGGGGUUCUAUUGUAGAUGCCCGAAUAGAACCCUGUGCAAGUGGUCUUGCCACUGAUGUCGUUUAUAGGGCAUUUGACAU .................(.........)......................................................... (..(.............(.........).............)).......................................... (..(.............(.........).............)).......(..)............................... (..(.............(.........).............)).......(..)...........((.........)..)..... (..(.............(.........).............)).......(..)...........((...(..)..)..)..... >NC_009019.1/13551-13635 GAGUCCGGGGUUCUAGUGUAAAUGCCCGACUAGAACCCUGUUCAAGUGGUCUAACCACUGAUGUCGUUUAUAGGGCAUUCGACAU .................(.........)......................................................... (..(.............(.........).............)).......................................... (..(.............(.........).............))......(...)............................... (..(.............(.........).............))......(...).............((.....)..)....... (..(.............(.........).............))......(...).............((.(..))..)....... >NC_009020.1/13686-13770 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCCAGUGGUCUUACCACUGAUGUUGUCUUUAGGGCAUUUGACAU .................(.........)......................................................... (..(.............(.........).............)).......................................... (..(.............(.........).............)).......(..)............................... (..(.............(.........).............)).......(..)...........((.........)..)..... (..(.............(.........).............))......(...)...........((...(..)..)..)..... >NC_010646.1/12389-12470 GGGUACGGGGUCUCAGUGAAGCUCGACUGAGGCCCUGUGCGUCGGGAUUGUUACCUGAUGUUGUUAAAAGAGCUUUUGAUCU .................(......)......................................................... (..(.............(......).............)).......................................... (..(.............(......).............))........(..).............................. (..(.............(......).............))........(..)..........((..............)..) (..(.............(......).............))........(..)..........((.....(..).....)..) >NC_038861.1/12339-12417 GAGUGCGGGGUUCUAGUGCAGCUCGACUAGAACCCUGCAAUGGUACUGAUCCAGACCAUGUUAGUAGAGCUUUUGACAU ..................(.....)...................................................... (..(..............(.....).............))....................................... (..(..............(.....).............))........(..)........................... (..(..............(.....).............))........(..).......((..............)..) (..(..............(.....).............))........(..).......((.....(..).....)..) >NC_038294.1/13433-13517 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUUCAAGUGGUUUGUCCACUGAUGUCGUCUUUAGGGCAUUUGACAU .................(.........)......................................................... (..(.............(.........).............)).......................................... (..(.............(.........).............))......(...)............................... (..(.............(.........).............))......(...)...........((.........)..)..... (..(.............(.........).............))......(...)...........((...(..)..)..)..... >AC_000192.1/13619-13703 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGAUAU .................(.........)......................................................... (..(.............(.........).............)).......................................... (..(.............(.........).............)).........(....)........................... (..(.............(.........).............)).........(....).........((............)..) (..(.............(.........).............)).........(....).........((...(..).....)..) >NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU .................(.........)......................................................... (..(.............(.........).............)).......................................... (..(.............(.........).............))........(..).............................. (..(.............(.........).............))........(..)............(.(...........)..) (..(.............(.........).............))........(..)............(.(..(..).....)..) >NC_025217.1/13932-14013 GGGUGCGCGGUGUAAGUGCAGCCCGUCUUACACCGUGUGGCAGUGGUCUUUCCACUGACGUCGUCGUAAGGGCUUUCGACCU ..................(.....)......................................................... (..(..............(.....).............)).......................................... (..(..............(.....).............))........(..).............................. (..(..............(.....).............))........(..)..........((..............)..) (..(..............(.....).............))........(..)..........((.....(..).....)..) >NC_001451.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGAUGUGAUCCUGAUGUUGUAAAGCGAGCCUUUGAUGU .................(......)......................................................... (..(.............(......).............)).......................................... (..(.............(......).............))........(....)............................ (..(.............(......).............))........(....).....(..(...............)..) (..(.............(......).............))........(....).....(..(......(..).....)..) >NC_001846.1/13602-13686 GGGUUCGGGGUACAAGUGUAAAUGCCCGUCUUGUACCCUGUGCCAGUGGCUUGGACACUGAUGUUCAAUUAAGGGCAUUUGACAU ..................(........)......................................................... (..(..............(........).............)).......................................... (..(..............(........).............))......(...)............................... (..(..............(........).............))......(...).............((.....)..)....... (..(..............(........).............))......(...)..............(((..))..)....... >NC_010800.1/12355-12436 GGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUGCUAGUGGGUGUGACCCUGAUGUUGUAAAGCGAGCCUUUGAUGU .................(......)......................................................... (..(.............(......).............)).......................................... (..(.............(......).............))........(....)............................ (..(.............(......).............))........(....)......(.(...............)..) (..(.............(......).............))........(....)......(.(......(..).....)..) >NC_016993.1/11435-11516 GAGUAACGGGGUCCAGUGGCGCCCGCCUGGAACCCCAGCAGCCAGGUACAACCCCUGAUGCUGUAAAAAGGGCAUUUCAUGU ..................(.....)......................................................... (..(..............(.....).............)).......................................... (..(..............(.....).............)).......(....)............................. (..(..............(.....).............)).......(....)...........(.(...........)..) (..(..............(.....).............)).......(....)...........(.(..(..).....)..) >NC_006577.2/13601-13685 GGGUUCGGGGUACUAGUGUGAAUGCCCGGCUAGUACCCUGUGCUAGUGGUUUAUCUACUGAUGUUCAAUUAAGGGCAUUUGACAU .................(.........)......................................................... (..(.............(.........).............)).......................................... (..(.............(.........).............))........(..).............................. (..(.............(.........).............))........(..)...........(..(......)..)..... (..(.............(.........).............))........(..)...........(..((..)..)..)..... >NC_034440.1/13207-13291 GAGUCCGGGGUUCUAUUGUAAAUGCCCGAAUAGAACCCUGUGCAAGUGGUUUGUCCACUGAUGUCGUUUUUAGGGCAUUUGACAU .................(.........)......................................................... (..(.............(.........).............)).......................................... (..(.............(.........).............))......(...)............................... (..(.............(.........).............))......(...)...........((.........)..)..... (..(.............(.........).............))......(...)...........((...(..)..)..)..... >NC_045512.2/13469-13550 GGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUAUACAGGGCUUUUGACAU ..................(.....)......................................................... (..(..............(.....).............).)......................................... (..(..............(.....).............).).........(....).......................... (..(..............(.....).............).).........(....)........((.....)..)....... (..(..............(.....).............).).........(....)........((.(..))..)....... >NC_030292.1/12123-12201 GAGUACGGGGUUCUAGUGGAGCUCGACUAGAACCCUGCAAUGGUACAAACCCUGAUUGUGUUACCAGGGCCUUUGAUGU .................(......)...................................................... (..(.............(......).............))....................................... (..(.............(......).............))........(.....)........................ (..(.............(......).............))........(.....)...........((.......)..) >NC_028833.1/11986-12064 GAGUACGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUUCCGAAACGGACCAUGUUGUGCGUGCUUUUGACAU ..................(.....)...................................................... (..(..............(.....).............))....................................... (..(..............(.....).............))......(.....).......................... (..(..............(.....).............))......(.....)...........((..)..)....... >NC_003045.1/13342-13426 GGGUUCGGGGUACGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUACAAUUAAGGGCAUUUGAUAU ..................(........)......................................................... (..(..............(........).............)).......................................... (..(..............(........).............))........(..).............................. (..(..............(........).............))........(..)............(.(...........)..) >NC_034972.1/12332-12401 GGGUGCGGGGCUCUAGUGAUGCUCAACUAGAGCCCUGUAGUGAGCAUCAUGUGAUAAGGGCUUUUGAUAU .................(......)............................................. (..(.............(......).............)).............................. (..(.............(......).............)).......(....)................. (..(.............(......).............)).......(....).....((......)..) >NC_006213.1/13341-13425 GGGUUCGGGGUACGAGUGUAGAUGCCCGUCUCGUACCCUGCGCCAGUGGUUUAUCUACUGAUGUACAAUUAAGGGCAUUUGAUAU ..................(........)......................................................... (..(..............(........).............)).......................................... (..(..............(........).............)).........(.....).......................... (..(..............(........).............)).........(.....).........((...........)..) >NC_035191.1/11208-11289 GGGCAAGGGGUUCUAGUGGAGCUCGACUAGAACCCUGUGGUAAUGGUACUGAACCUGAUGUAGUUGUAAGAGCUUUUGAUAU .................(......)......................................................... (..(.............(......).............)).......................................... (..(.............(......).............))........(.....)........................... (..(.............(......).............))........(.....).............(..(......)..) >NC_003436.1/12621-12699 GAGUACGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAUACACAACAUGUGUAUCGUGCUUUUGACAU ..................(.....)...................................................... (..(..............(.....).............))....................................... (..(..............(.....).............)).......(...)........................... (..(..............(.....).............)).......(...)................(.(....)..) >NC_010438.1/12936-13014 GAGUGCGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCAGAACACGUAAUCCGUGCCUUUGACAU ..................(.....)...................................................... (..(..............(.....).............))....................................... (..(..............(.....).............))........(......)....................... (..(..............(.....).............))........(......)..............((...)..) >NC_022103.1/12533-12611 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGCACUGAUACUGAUCAUGUGUAUCGUGCUUUUGAUAU ..................(.....)...................................................... (..(..............(.....).............).)...................................... (..(..............(.....).............).)........(....)........................ (..(..............(.....).............).)........(....)........((..........)..) >NC_010437.1/13049-13127 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCGGAGCAUGUUGUACGCGCCUUUGAUAU ..................(.....)...................................................... (..(..............(.....).............))....................................... (..(..............(.....).............))........(...).......................... (..(..............(.....).............))........(...).............(.(......)..) >NC_032730.1/12539-12608 GGGUGCGGGGCUCUAGUGAUGCUCAACUAGAGCCCUGUAGUGAACAUCAUGUUGUAAGAGCUUUUGAUAU .................(......)............................................. (..(.............(......).............)).............................. (..(.............(......).............))........(...)................. (..(.............(......).............))........(...).....((......)..) >NC_032107.1/12473-12551 GAGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGCACGGACAUAGAUAAGUGUGUUCGUGCUUUUGAUAU ..................(.....)...................................................... (..(..............(.....).............).)...................................... (..(..............(.....).............).)..........(........).................. >NC_016996.1/11062-11143 GAGUAAAGGGUUCUAGUGAUGCCCGUCUAGAACCCCAACAGUCUGGCACUCAGCCGGAUAUUGUAAAAAGGGCGUUUCAUGU .................(......)......................................................... (..(.............(......).............)).......................................... (..(.............(......).............))........(..).............................. >NC_028752.1/12536-12614 GAGUCAGGGGCUCUAGUGCCGCUCGACUAGAGCCCUGCAAUGGUACAGACAUAGAUUAUUGUGUCCGUGCAUUUGACGU ..................(.....)...................................................... (..(..............(.....).............).)...................................... (..(..............(.....).............).)......(..)............................ >NC_028811.1/12239-12317 GAGUGCGGGGCUCUAGUGAUGCUCGACUAGAGCCCCUAAAUGGCACUGACAUCGAUAGAUGUGUUCGUGCUUUUGAUGU .................(......)...................................................... (..(.............(......).............))....................................... >NC_009657.1/12651-12729 GAGUGCGGGGCUCUAGUGCAGCUCGACUAGAGCCCUUAAAUGGUUCGGACACACAUCAUGUGUUCCGUGCUUUUGAUGU ..................(.....)...................................................... (..(..............(.....).............))....................................... >NC_002645.1/12521-12599 GAGUCCGGGGCUCUAGUGCCGCUCGACUAGAGCCCUGUAAUGGUACAGACAUAGAUUACUGUGUCCGUGCAUUUGACGU ..................(.....)...................................................... (..(..............(.....).............).)...................................... >NC_028814.1/12204-12282 GAGCAAGGGGCUCUAGUGCAGCUCAACUAGAGCCCUGUAAUGGUACUGACACUGAUCACUGUGUCCGAGCCUUCGACAU .................(......)...................................................... (..(.............(......).............))....................................... >NC_016992.1/11425-11506 GAGUAACGGGUUCUAGUGAUGCCCGGCUAGAACCCCUGCAGCCUGGUACUCAGCCAGAUGCUGUAAAAAGGGCCUUCCAUGU .................(......)......................................................... (..(.............(......).............)).......................................... >NC_014470.1/13298-13379 GGGUUUGCGGUGUAAGUGCGGCCCGUCUUACACCGUGCGGCACAGGCACAAGCACUGAUGUCGUUUACAGGGCUUUUGAUAU ..................(.....)......................................................... (..(..............(.....).............).)......................................... >NC_011547.1/11353-11434 GAGUAACGGGUUCUAGUGGUGCCCGACUAGAACCCCAACAGCCAGGCGUUACACCUGAUGCUGUUAAACGGGCAUUUCAUGU .................(......)......................................................... (..(.............(......).............)).......................................... >NC_018871.1/12618-12696 GAGCAAGGGGCUCUAGUGCAGCUCAACUAGAGCCCUGCAAUGGCACUGACACUGAUCAUUGUGUCAGAGCAUUUGACAU .................(......)...................................................... >NC_005831.2/12440-12518 GAGCAAGGGGUUCUAGUGCAGCUCGACUAGAACCCUGCAAUGGCACGGACAUCGAUAAGUGUGUUCGUGCUUUUGACAU ..................(.....)...................................................... >NC_016991.1/11350-11431 GAGUAAUGGGUUCUAGUGGUGCCCUGCUAGAACCCUUACAGCCUGGAUCUCAACCAGAUGCUGUUAAACGGGCAUUUCAUGU .................(......)......................................................... >NC_011550.1/11593-11674 GAGUAGUGGGUUCCAGUGAAGCCCGACUGGAACCCCAACAGCCAGGUACAAUCCCUGAUGCUGUUAAACGGGCUUUUCAUGU .................(......)......................................................... >NC_016994.1/11312-11393 GAGUAAAGGGUUCUAGUGAUGCCCGCCUAGAACCCUGCACUAGCGACAACCGACCCGAUGUCGUCGUUAGGGCGUUUAACAU ..................(.....)......................................................... >NC_039208.1/11408-11489 GAGUAACGGGUUCUAGUGACGCCCGGCUAGAACCCCUGCAGCCUGGAACUCAACCAGAUGCUGUAAAAAGGGCCUUCCAUGU .................(......)......................................................... >NC_011549.1/11404-11485 GAGUAACGGGGUCUAGUGGUGCCCGCCUAGAACCCCUACAACAUGGUGUUACACCAGAUGUUGUACAAAGGGCUUUUCAUGU ..................(.....)......................................................... >NC_028824.1/12252-12330 GGGCAAGGGGCUCUAGUGCAGCUCGACUAGAGCCCUGUAAUGGUACUGAACCAGAACAUUGUGUUCGUGCUUUUGACGU ..................(.....)...................................................... >NC_016995.1/10923-11004 GAGUGAAGGGUUCAAGUGGUGCCCGCCUUGAACCCAUGCGGCCUGGUGCUCAACCUGACCCGCUCGUAAGGGCAUUUCAUGU ..................(.....)......................................................... >NC_004718.3/13399-13480 GGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUCUACAGGGCUUUUGAUAU ..................(.....).........................................................

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	(.NGCYC.)			< 0.001		303

NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
2	G(RG(Y))			< 0.001		8.18

NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
3	(.NY.)			< 0.001		1.63

NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
4	((R)YN)U			< 0.001		1.78

NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
5	(RG)			< 0.001		2.26

NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	(.NGCYC.)			< 0.001		303

NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
2	.GUNCA.			< 0.001		4.1

NC_026011.1/13485-13569 GGGUUCGGGGUGCGAGUGUAGAUGCCCGUCUCGUACCCUGUGCCAGUGGUUUAUCUACUGAUGUUCAAAAAAGGGCAUUUGAUAU .........1.........2.........3.........4.........5.........6.........7.........8..... 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).