D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

ASpks TB sRNA (Rfam: RF01782)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

((C)YU)C
C(U(U))
U(AN)G
N(N(R)())
(NCNN)

98.7
94.8
96.1
100.0
100.0

((C)YU)C
C(U(U))
U(AN)G

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 99.6 %
(± 0.233 %)

Decision tree:

5-fold cross-validation: 95.7 %
(± 2.08 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 96.2 %
(± 2.33 %)

of ACEW01000646.1/24872-24798

ACEW01000646.1/24872-24798

CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC
(.(..))(.((((((((((.((...(((....))).))..((((((((((..))))))))))))))))))))..)
.........1.........2.........3.........4.........5.........6.........7.....
123456789012345678901234567890123456789012345678901234567890123456789012345

abstract shape: `()(()())`

					Number of sequences
	Structure	ORBs			(out of 77)	(%)
1		((C)YU)C			73	94.8
>AJ278573.1/57317-57243 CUUCACCGACCCCAGCCACAACGGCCGUUCCACAGGCCGCUGUUGGCCGUACGUGGCCAGCAGCGCCUGCGCCUC ...........(..(........................................................)..) >AB070940.1/62113-62039 CUUCACGGAGCCGAGCCACAGCGGCCGGUCGGCCGGACGGUCCUGCCCAUAGGUGGCCAGCAGCGCCUGGGCCUC ............(.(........................................................)..) >ACHO01000102.1/1739-1816 CUUCACCGACCCCAACCACAAAGGUUCUCCCGGCUCCCCCCGAUCUUGCCCAUAAGUGGCCAACAACGCCUGAGCCUC .......................(.(................................................)..) >AM992894.1/57327-57253 CUUGACGGAGCCCAGCCACAGCGGCCGGUCCGCGGGACGGUCCUGCCCGUACGUGGCGAGCAGCGCCUGCGCCUC .......(.(.............................................................)..) >DQ885223.1/16824-16750 CUUCACGGAGCCCAGCCACAGCGGCCGAUCCGCAUCCCGGUCCUGACCAUAGGUGGCCAACAACGCCUGCGCCUC .......(.(.............................................................)..) >AY330485.1/49895-49821 CUUCACCGAACCCAGCCACAGCGGGUGGCCGGCAGGACGGUUCUGCCCGUAGGUGGCCAGCAACGCGUGCGCCUC .............((........................................................)..) >ACEV01000078.1/34422-34496 CUUGAUCGACCCGAGCCACAGCGGCUGGUCCCCGGAACGGUCCUGACCGUAGGUGGCCAGCAAUGCCUGCGCCUC ...................((..................................................)..) >AM420293.1/4575606-4575680 CUUGAUCGAGCCCAGCCACAGCGGUCGGCCGGCGGGGCGGUCCUGCCCGUAGGUGGCCAGCAACGCCUGGGCCUC ...........(..(........................................................)..) >FJ872525.1/68398-68472 CUUGAUGGAGCCCAGCCAGAGCGGCCGGUUCCCGGGGCGGUCCUGCCCGUAGGUGGCGAGCAGCGCCUGGGCCUC .......(.(.............................................................)..) >CP000667.1/3498019-3497946 CUUGACUGAUCCGAGCCAUACCGGUUGCUCCGGCGCCCGCCCCUGCCCGUAGGUGGCCAGAAUCGCCUCGGCUU ............(.(..................................................)..)..... >AB241068.1/31162-31088 CUUGAUCGAGCCCAGCCUCAGCGGCCGAUCCUCGGGACGAUCCUGACCGUAGGUGGCAAGCAGCGCCUGAGCCUC ..............((.......................................................)..) >EU301739.1/21169-21243 CUUCACCGAGCCGAGCCACAGCGGCCGGUCCGCGGGCCGGUCCCGCCCGUAGGUGGCCAGCAGCGCGUGCGCCUC ............(.(........................................................)..) >ACEX01000725.1/1517-1443 CUUGAUGGAGCCGAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUACGUGGCCAGCAGCGCCUGCGCCUC .......(.(.............................................................)..) >DQ249341.1/19326-19252 CUUCAAUGACCCCAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUAGGUGGCCAGGAGUGCCUGGGCCUC ........((.............................................................)..) >AB089954.2/42131-42057 CUUCACCGAGCCGAGCCAGAGCGGUCGUCCCUCCGGUCGCCCCUGCCCGUAGGUGGCCAGCAGCGCCUCGGCCUC .......(.(.............................................................)..) >DQ272522.1/12501-12430 CUUGACCGAGCCGAGCCAGAGGGGUUCGCCCGCCCGUUCCUGGCCGUAGGUGGCCAGCAGGGCCUGUGCCUC ............(.(.....................................................)..) >BA000030.3/3537854-3537780 CUUGACCGAGCCCAGCCACAGCGGCUGCUCGGCGCUCCGCUCCCGGCCGUAGGUGGCCAGCAGCGCCUGUGCCUC .............((........................................................)..) >DQ272520.1/44029-43955 CUUCAACGAGCCGAGCCACAGCGGCCGUUCCGCGGGCCGCCCCUGCCCGUACGUGGCCAGCAGCGCCUGCGCCUC .........((............................................................)..) >CP000325.1/2633019-2633093 CUUGAUCGAACCCACCCACAACGGCCGACCCGGCUCACGAUCUUGCCCAUAAACUGCCAACAACGCCUGAGCCUC .....................((................................................)..) >AB088224.2/78764-78838 CUUCACCGACCCCAGCCACAACGGCCGACCCGGAUCACGCCCCUGCCCAUACGUCGCCAGCAGCGCCUGCGCCUC .........((............................................................)..) >DQ983361.1/13526-13452 CUUCAACGACCCCAGCCACAACGGCCGGUCGCCCGGACGGUCCUGGCCAUACGUGGCCAGCAACGCCUGCGCCUC ........(.(............................................................)..) >AL939127.1/37816-37890 CUUCAGCGAGCCCAGGUACAGCGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC .......(.(.............................................................)..) >AY373435.1/87516-87590 CUUUACCGACCCCAGCCACAACGGCCGGUCCACCGGACGAUCCUGCCCAUACGUGGCCAGCAGCGCCUGAGCCUC .......(..(............................................................)..) >DQ897668.1/47801-47727 CUUGAUCGAGCCGAGCCAGAGCGGCCGCUCCGCUGUGUGCGCCUUGCCGUAGGUCGCCAGCAGCGCCUGCGCCUC ............(.(........................................................)..) >CP000850.1/1439122-1439048 CUUGAUCGAGCCCAGCCACAGCGGCCGGUCCGGCUCGCGGCCCUGACCGUAGGUUGCCAACAGCGCCUGUGCCUC .............((........................................................)..) >AY947889.1/31966-31892 CUUCAACGACCCCAGCCACAGCGGCUGACCCUCCGGCCGCUCCUGCCCGUAGGUGGCCAGGAGCGCCUGGGCCUC ...........(..(........................................................)..) >ABJF01000253.1/13421-13347 UUUGAUCGAGCCGAGCAGCAGCGGCCGGUCCGCCGACCGGUCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC ............(.(........................................................)..) >AY509120.1/55569-55498 CUUCAACGAACCAAGCCGCAACGGCCGACCCGCAUCCCGCUGCCCAUACGUCGCCAACAACGCCUGCGCCUC ...........(..(.....................................................)..) >AL583917.1/183315-183241 CUUAAUUGAGCCCACCCACAACGGCUGGUCUGCCGGACGUCCCUGCCCAUACGUGGCCAGCAAUGCCUGCGCUUC .........((............................................................)..) >AM778535.1/35090-35016 CUUCAGCGAACCCAGCCAGAGCGGCCGUUGGGCCGGACGGUCCUGUCCAUAGGUGGCCAGCAGGGCCUCCGCCUC .......(.(.............................................................)..) >EF990140.1/20397-20471 CUUCAACGAGCCCAGCCACAACGGCCGCUCCGCGGGCCGAUCCUGGCCGUAGGUCGCCAGCAACGCCUGCGCCUC .........(.(...........................................................)..) >AJ300302.1/38594-38668 CUUCACCGAACCGAGCCAGAGCGGCCGGCCCUCCUCACGCUCCUGCCCGUACGUGGCCAGGAGCGCCUGCGCCUC ............(.(........................................................)..) >ACEY01000056.1/27545-27471 CUUGAGUGAGCCGAGGUACAGGGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC .......(.(.............................................................)..) >AP009493.1/7331862-7331788 CUUCACCGACCCCAACCACAACGGACGACCCUCCGGCCGGUCCUGGCCGUACGUCGCCAGCAAUGCCUGAGCCUC .............(.(.......................................................)..) >FM173265.1/60520-60446 CUUCACCGAGCCCAGCCACAGCGGCCGGCCGUCCGCCCGUUCCUGCCCGUAGGUGGCCAGGAGUGCCUGCGCUUC .........((............................................................)..) >AB193609.1/28918-28992 CUUCACCGCACCCAGCCACAACGGCCGCUCCGCAGAAUGCGCCUGACCAUAGGUGGCCAGCAGCGCCUGUGCCUC ..............((.......................................................)..) >AF079138.1/34082-34008 CUUCAGCGUCCCCAGCCGCAGCGGCUGCCCCGGGGCGCGCCCCUGCCCGUACGUGGCGAGCAGCGCCUGCGCCUC ..............((.......................................................)..) >AY354515.1/26777-26703 CUUCAGCGAGCCCAGCCAGAGCGGCUUGGCGGGAUCCCGGUCCCGGCCAUAGGUCGCCAGCAGUGCCUGGGCCUC .......(.(.............................................................)..) >AY442225.1/12405-12331 CUUCACCGACCCCAGCCACAGCGGCCGUCCCUCCGGCCGCUCCUGGCCGUAGGUGGCCAUCAGGGCCUGGGCCUC ...........(..(........................................................)..) >AP011115.1/4466351-4466422 CUUGACGGAGCCGAGCCACAGCGGCCGGCCCUCCCGGCCCUGCCCGUACGCGGCCAGCAGCGCCUGCGCCUC .......(.(..........................................................)..) >ABYA01000007.1/18827-18759 CUUCAGCGAACCCAGCCACAGCGGCCGCUCGCGGUCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC .......((........................................................)..) >ABYC01000016.1/10010-10084 CUUGACCGAGCCGAGCAGCAGCGGCCGGUCCUCCGGGCGGUCCUGGCCGUAGGUGGCGAGGAGCGCCUGGGCCUC ............(.(........................................................)..) >DQ174320.1/1017-943 CUUCACCGAGCCGAGCAGCAGCGGCCGCUCCGGGUCGCGGUCCUGGCCGUACGCGGCCAGCAGCGCCUGCGCCUC ............(.(........................................................)..) >ACES01000072.1/521-453 CUUGAGCGAGCCGAGCCAGAGCGGCCGGUCCCGGUCCUGGCCGUAGGUGGCCAGGAGCGCCUGGGCCUC .......(.(.......................................................)..) >EU827593.1/24706-24638 CUUGAGCGAGCCCAGCCACAGCGGCUGCUCGCGGUCCUGCCCGUAGGUGGCGAGCAGCGCCUGCGCCUC .......((........................................................)..) >DQ351275.1/34835-34761 CUUCAGGGACCCCAACCACAACGGCCGAUCCGCAUCCCGGUCCUGACCGUAGGUGGCCAGCAGCGCCUGCGCCUC ................(..(...................................................)..) >CP001778.1/4412204-4412278 CUUCAGCGAGCCCAGCCACACCGGGUCCUGUUCGUCACGUCCCUGGCCAUAGGUGGCCAGCAGGGCACGGGCUUC .................((....................................................)..) >DQ450945.1/278-204 CUUGACGGAGCCGAGCCAGAGGGGUUCGUCGCCCGGCCGGUCCUGGCCGUACGUGGCCAGCAGCGCCUGCGCCUC ...................((..................................................)..) >AF440781.1/18383-18309 CUUCACCGACCCGAGCCACAACGGCCGCUCCGCCGAACGCCCUUGGCCGUACGUGGCGAGCAGGGCCUGCGCCUC ............(.(........................................................)..) >CP000820.1/4103109-4103183 CUUCAGGCUCCCCAGCCACAGCGGCUCGCCGGCCGGCCGGCCCUGCCCGUAGGUGGCCAGCAGCGCCUGCGCCUC ..............((.......................................................)..) >U78289.1/37388-37314 CUUCAGCGAGCCGAGCCACAGCGGGUGGUCGCCGGAACGGUUCCGUCCGGAGGCGGCGAGCAGCGCCCCGGCCUC ..............((.......................................................)..) >AF040570.3/33112-33038 CUUGACCGAGCCCAGCCACAGCGGUUGCUGCGGGUCGCGGCCCUGGCCGUAGGUGGCCAGCAGCGCCUGGACCUC .............((........................................................)..) >DQ149987.1/24965-24891 CUUCAACGAGCCCAGCCAGAGCGGCCGGUCCACCGGGCGGCCCUGGCCGUAGGUGGCCAGCAGUGCCUGUGCCUC ........((.............................................................)..) >ABIN01000326.1/1855-1781 UUUGAUCGACCCCAGCCACAGCGGCCGGUCCGCGGGCCGGUCCUGCCCGUAGGUGGCCAGAAGCGCUUGCGCCUC .............((........................................................)..) >AF357202.1/6136-6062 CUUCACCGAGCCGAGCAGCAGCGGCUUGUCCUCGUCGCGCUGCUGACCGUAGGUGGCGAGCAGCGCCUGCGCCUC ............(.(........................................................)..) >EU443633.1/90996-90922 CUUGACCGAGCCCAGCCACAGCGGCUGGCCCGUGGGCCGGUCCUGCCCGUACGUGGCCAGGAGCGCCUGCGCCUC .............((........................................................)..) >CP001630.1/3075151-3075083 CUUGAUCGAGCCCAGCCACAGCGGCUCGGUGCGGUCCUGACCGUAGGUGGCCAGCAGCGCCUGCGCCUC ..........((.....................................................)..) >AJ575648.1/7360-7286 CUUCAGCGAGCCGAGCCACAGCGGCUGGUCCGCCGGACGGCCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC ............(.(........................................................)..) >AB363939.1/62008-62082 CUUCACCGAGCCCAGCCACAACGGCUGUUCCCCGGAACGCUCCUGGCCAUAUGUGUCGAGCAGGGCCUGGGCUUC .......(.(.............................................................)..) >ACHP01000061.1/2873-2947 CUUGAUUGAGCCCACCCACAGCGGCUGCUCCGCUGGACGUCCCUGCCCGUAGGUGGACAGCAAUGCCUGCGCUUC ...........(.(.........................................................)..) >ABYX01000217.1/5176-5102 CUUCACGGAGCCGAGCCACAGCGGCUGCUCCGCCGGGCGGUCCGCGCCGUACGUCGCGAGCAGGGCCUGCGCCUC .........((............................................................)..) >AF453501.1/66079-66147 CUUGACCGAGCCCAGCAGCACCGGUUCGGCCCGGUCCUGCCCGUAGGUGGCCAGGAUCGCCUGCGCCUC ........((.......................................................)..) >AB435553.1/54914-54840 CUUCAGCGAACCCAGCCACAACGGCCGGUCCGCCGACCGGGCCUGUCCGUAGGUGGCGAUCAACGCCUGCGCCUC ...........(..(........................................................)..) >AM238664.2/537680-537754 CUUCAAGGACCCCAGCCACAGGGGUCGUUCCGCGUCCCGCUCCUGCCCGUAGGUGGCCAACAGCGCCUGCGCCUC .............((........................................................)..) >AY899214.1/12042-11968 CUUGAUGGAACCCAGCCACAGCGGACGGCCCGCGGGCCGGUCCUGCCCGUACGUCGCCAGCAGCGCCUGCGCCUC ..............((.......................................................)..) >DQ116941.2/41188-41114 CUUGAUCGAGCCCAGCCACAGCGGCUGUUCAGGCUCCCGGUCCUGCCCGUAAGUGGCGAGCAGUGCCUGGGCCUC ...........(..(........................................................)..) >ABYB01000295.1/8504-8430 CUUGACGGAGCCGAGCCAGAGCGGCUGUCCGGCGUCGCGUGCCGCCCCGUAGGUGGCGAGGAGGGCCUGUGCCUC ...............(..(....................................................)..) >DQ884175.1/58497-58429 CUUCACCGACCCCAGCCACAACGGCUCCUCGCGAUCCUGGCCAUAGGUGGCGAGCAAGGCCUGUGCCUC ..........((.....................................................)..) >AY310323.2/100244-100318 CUUGAUGGAGCCGAGCAGCAGCGGCCGGUCCUCGGGCCGGUCCUGCCCGUACGUCGCCAGCAGCGCCUGGGCCUC ............(.(........................................................)..) >CT573213.2/2804363-2804289 CUUCAGCGACCCCAGCCACAGCGGGUCGGCCGCGUCCCGGUCCUGCCCGUAGGUCGCCAGGAUCGCCUGCGCCUC ..............((.......................................................)..) >AJ871581.1/19441-19515 UUUGAGCGAUCCCAGCCACAGGGGCUGGCCGGCGUCGCGGUCCCGGCCGUAGGUGGCCAGCAACGCCUCGGCCUC .............((........................................................)..) >DQ176871.1/41145-41071 CUUCAACGAGCCCAGCCACAGCGGCCGUUCGGCAGGACGCUCCUGCCCGUAGGUGGCCUGGAGCGCCUGCACCUC ...........(..(........................................................)..) >ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC ......(..(.............................................................)..)
2		((C)YU)C C(U(U))			62	80.5
>AJ300302.1/38594-38668 CUUCACCGAACCGAGCCAGAGCGGCCGGCCCUCCUCACGCUCCUGCCCGUACGUGGCCAGGAGCGCCUGCGCCUC (.(.....))..(.(........................................................)..) >DQ272520.1/44029-43955 CUUCAACGAGCCGAGCCACAGCGGCCGUUCCGCGGGCCGCCCCUGCCCGUACGUGGCCAGCAGCGCCUGCGCCUC (.(..))..((............................................................)..) >FM173265.1/60520-60446 CUUCACCGAGCCCAGCCACAGCGGCCGGCCGUCCGCCCGUUCCUGCCCGUAGGUGGCCAGGAGUGCCUGCGCUUC (.(...)).((............................................................)..) >EF990140.1/20397-20471 CUUCAACGAGCCCAGCCACAACGGCCGCUCCGCGGGCCGAUCCUGGCCGUAGGUCGCCAGCAACGCCUGCGCCUC (.(..))..(.(...........................................................)..) >ACEY01000056.1/27545-27471 CUUGAGUGAGCCGAGGUACAGGGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC (.(..))(.(.............................................................)..) >AL939127.1/37816-37890 CUUCAGCGAGCCCAGGUACAGCGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC (.(..))(.(.............................................................)..) >ABYA01000007.1/18827-18759 CUUCAGCGAACCCAGCCACAGCGGCCGCUCGCGGUCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC (.(..))((........................................................)..) >AY373435.1/87516-87590 CUUUACCGACCCCAGCCACAACGGCCGGUCCACCGGACGAUCCUGCCCAUACGUGGCCAGCAGCGCCUGAGCCUC (.(..))(..(............................................................)..) >AP011115.1/4466351-4466422 CUUGACGGAGCCGAGCCACAGCGGCCGGCCCUCCCGGCCCUGCCCGUACGCGGCCAGCAGCGCCUGCGCCUC (.(..))(.(..........................................................)..) >DQ272522.1/12501-12430 CUUGACCGAGCCGAGCCAGAGGGGUUCGCCCGCCCGUUCCUGGCCGUAGGUGGCCAGCAGGGCCUGUGCCUC (.(...)..)..(.(.....................................................)..) >AP009493.1/7331862-7331788 CUUCACCGACCCCAACCACAACGGACGACCCUCCGGCCGGUCCUGGCCGUACGUCGCCAGCAAUGCCUGAGCCUC (.(.....).)..(.(.......................................................)..) >AY509120.1/55569-55498 CUUCAACGAACCAAGCCGCAACGGCCGACCCGCAUCCCGCUGCCCAUACGUCGCCAACAACGCCUGCGCCUC (.(.....)).(..(.....................................................)..) >ACES01000072.1/521-453 CUUGAGCGAGCCGAGCCAGAGCGGCCGGUCCCGGUCCUGGCCGUAGGUGGCCAGGAGCGCCUGGGCCUC (.(..))(.(.......................................................)..) >ACEX01000725.1/1517-1443 CUUGAUGGAGCCGAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUACGUGGCCAGCAGCGCCUGCGCCUC (.(..))(.(.............................................................)..) >AM420293.1/4575606-4575680 CUUGAUCGAGCCCAGCCACAGCGGUCGGCCGGCGGGGCGGUCCUGCCCGUAGGUGGCCAGCAACGCCUGGGCCUC (.(...))...(..(........................................................)..) >DQ983361.1/13526-13452 CUUCAACGACCCCAGCCACAACGGCCGGUCGCCCGGACGGUCCUGGCCAUACGUGGCCAGCAACGCCUGCGCCUC (.(..)).(.(............................................................)..) >CP000850.1/1439122-1439048 CUUGAUCGAGCCCAGCCACAGCGGCCGGUCCGGCUCGCGGCCCUGACCGUAGGUUGCCAACAGCGCCUGUGCCUC (.(....).)...((........................................................)..) >AL583917.1/183315-183241 CUUAAUUGAGCCCACCCACAACGGCUGGUCUGCCGGACGUCCCUGCCCAUACGUGGCCAGCAAUGCCUGCGCUUC (.(..))..((............................................................)..) >FJ872525.1/68398-68472 CUUGAUGGAGCCCAGCCAGAGCGGCCGGUUCCCGGGGCGGUCCUGCCCGUAGGUGGCGAGCAGCGCCUGGGCCUC (.(..))(.(.............................................................)..) >AB089954.2/42131-42057 CUUCACCGAGCCGAGCCAGAGCGGUCGUCCCUCCGGUCGCCCCUGCCCGUAGGUGGCCAGCAGCGCCUCGGCCUC (.(..))(.(.............................................................)..) >DQ149987.1/24965-24891 CUUCAACGAGCCCAGCCAGAGCGGCCGGUCCACCGGGCGGCCCUGGCCGUAGGUGGCCAGCAGUGCCUGUGCCUC (.(..)).((.............................................................)..) >AM992894.1/57327-57253 CUUGACGGAGCCCAGCCACAGCGGCCGGUCCGCGGGACGGUCCUGCCCGUACGUGGCGAGCAGCGCCUGCGCCUC (.(..))(.(.............................................................)..) >EU443633.1/90996-90922 CUUGACCGAGCCCAGCCACAGCGGCUGGCCCGUGGGCCGGUCCUGCCCGUACGUGGCCAGGAGCGCCUGCGCCUC (.(....).)...((........................................................)..) >AY330485.1/49895-49821 CUUCACCGAACCCAGCCACAGCGGGUGGCCGGCAGGACGGUUCUGCCCGUAGGUGGCCAGCAACGCGUGCGCCUC (.(.....).)..((........................................................)..) >AF453501.1/66079-66147 CUUGACCGAGCCCAGCAGCACCGGUUCGGCCCGGUCCUGCCCGUAGGUGGCCAGGAUCGCCUGCGCCUC (.(..)).((.......................................................)..) >ABYC01000016.1/10010-10084 CUUGACCGAGCCGAGCAGCAGCGGCCGGUCCUCCGGGCGGUCCUGGCCGUAGGUGGCGAGGAGCGCCUGGGCCUC (.(...)..)..(.(........................................................)..) >CP000667.1/3498019-3497946 CUUGACUGAUCCGAGCCAUACCGGUUGCUCCGGCGCCCGCCCCUGCCCGUAGGUGGCCAGAAUCGCCUCGGCUU (.(....))...(.(..................................................)..)..... >ACHP01000061.1/2873-2947 CUUGAUUGAGCCCACCCACAGCGGCUGCUCCGCUGGACGUCCCUGCCCGUAGGUGGACAGCAAUGCCUGCGCUUC (.(...))...(.(.........................................................)..) >DQ174320.1/1017-943 CUUCACCGAGCCGAGCAGCAGCGGCCGCUCCGGGUCGCGGUCCUGGCCGUACGCGGCCAGCAGCGCCUGCGCCUC (.(...)..)..(.(........................................................)..) >AB363939.1/62008-62082 CUUCACCGAGCCCAGCCACAACGGCUGUUCCCCGGAACGCUCCUGGCCAUAUGUGUCGAGCAGGGCCUGGGCUUC (.(..))(.(.............................................................)..) >ABYX01000217.1/5176-5102 CUUCACGGAGCCGAGCCACAGCGGCUGCUCCGCCGGGCGGUCCGCGCCGUACGUCGCGAGCAGGGCCUGCGCCUC (.(..))..((............................................................)..) >U78289.1/37388-37314 CUUCAGCGAGCCGAGCCACAGCGGGUGGUCGCCGGAACGGUUCCGUCCGGAGGCGGCGAGCAGCGCCCCGGCCUC (.(.....).)...((.......................................................)..) >AB070940.1/62113-62039 CUUCACGGAGCCGAGCCACAGCGGCCGGUCGGCCGGACGGUCCUGCCCAUAGGUGGCCAGCAGCGCCUGGGCCUC (.(...)..)..(.(........................................................)..) >AF440781.1/18383-18309 CUUCACCGACCCGAGCCACAACGGCCGCUCCGCCGAACGCCCUUGGCCGUACGUGGCGAGCAGGGCCUGCGCCUC (.(....))...(.(........................................................)..) >DQ116941.2/41188-41114 CUUGAUCGAGCCCAGCCACAGCGGCUGUUCAGGCUCCCGGUCCUGCCCGUAAGUGGCGAGCAGUGCCUGGGCCUC (.(...))...(..(........................................................)..) >BA000030.3/3537854-3537780 CUUGACCGAGCCCAGCCACAGCGGCUGCUCGGCGCUCCGCUCCCGGCCGUAGGUGGCCAGCAGCGCCUGUGCCUC (.(...)..)...((........................................................)..) >AB435553.1/54914-54840 CUUCAGCGAACCCAGCCACAACGGCCGGUCCGCCGACCGGGCCUGUCCGUAGGUGGCGAUCAACGCCUGCGCCUC (.(.....)).(..(........................................................)..) >AB241068.1/31162-31088 CUUGAUCGAGCCCAGCCUCAGCGGCCGAUCCUCGGGACGAUCCUGACCGUAGGUGGCAAGCAGCGCCUGAGCCUC (.(....).)....((.......................................................)..) >EU301739.1/21169-21243 CUUCACCGAGCCGAGCCACAGCGGCCGGUCCGCGGGCCGGUCCCGCCCGUAGGUGGCCAGCAGCGCGUGCGCCUC (.(...)..)..(.(........................................................)..) >AY354515.1/26777-26703 CUUCAGCGAGCCCAGCCAGAGCGGCUUGGCGGGAUCCCGGUCCCGGCCAUAGGUCGCCAGCAGUGCCUGGGCCUC (.(..))(.(.............................................................)..) >AY442225.1/12405-12331 CUUCACCGACCCCAGCCACAGCGGCCGUCCCUCCGGCCGCUCCUGGCCGUAGGUGGCCAUCAGGGCCUGGGCCUC (.(...))...(..(........................................................)..) >AB088224.2/78764-78838 CUUCACCGACCCCAGCCACAACGGCCGACCCGGAUCACGCCCCUGCCCAUACGUCGCCAGCAGCGCCUGCGCCUC (.(...)).((............................................................)..) >DQ249341.1/19326-19252 CUUCAAUGACCCCAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUAGGUGGCCAGGAGUGCCUGGGCCUC (.(..)).((.............................................................)..) >ABYB01000295.1/8504-8430 CUUGACGGAGCCGAGCCAGAGCGGCUGUCCGGCGUCGCGUGCCGCCCCGUAGGUGGCGAGGAGGGCCUGUGCCUC (.(.....)).....(..(....................................................)..) >ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC (.(..))(.(.............................................................)..) >DQ897668.1/47801-47727 CUUGAUCGAGCCGAGCCAGAGCGGCCGCUCCGCUGUGUGCGCCUUGCCGUAGGUCGCCAGCAGCGCCUGCGCCUC (.(....).)..(.(........................................................)..) >AY899214.1/12042-11968 CUUGAUGGAACCCAGCCACAGCGGACGGCCCGCGGGCCGGUCCUGCCCGUACGUCGCCAGCAGCGCCUGCGCCUC (.(...))......((.......................................................)..) >AY947889.1/31966-31892 CUUCAACGACCCCAGCCACAGCGGCUGACCCUCCGGCCGCUCCUGCCCGUAGGUGGCCAGGAGCGCCUGGGCCUC (.(...))...(..(........................................................)..) >AJ278573.1/57317-57243 CUUCACCGACCCCAGCCACAACGGCCGUUCCACAGGCCGCUGUUGGCCGUACGUGGCCAGCAGCGCCUGCGCCUC (.(...))...(..(........................................................)..) >DQ884175.1/58497-58429 CUUCACCGACCCCAGCCACAACGGCUCCUCGCGAUCCUGGCCAUAGGUGGCGAGCAAGGCCUGUGCCUC (.(...))..((.....................................................)..) >AF357202.1/6136-6062 CUUCACCGAGCCGAGCAGCAGCGGCUUGUCCUCGUCGCGCUGCUGACCGUAGGUGGCGAGCAGCGCCUGCGCCUC (.(...)..)..(.(........................................................)..) >AF040570.3/33112-33038 CUUGACCGAGCCCAGCCACAGCGGUUGCUGCGGGUCGCGGCCCUGGCCGUAGGUGGCCAGCAGCGCCUGGACCUC (.(....).)...((........................................................)..) >AJ575648.1/7360-7286 CUUCAGCGAGCCGAGCCACAGCGGCUGGUCCGCCGGACGGCCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC (.(...)..)..(.(........................................................)..) >AF079138.1/34082-34008 CUUCAGCGUCCCCAGCCGCAGCGGCUGCCCCGGGGCGCGCCCCUGCCCGUACGUGGCGAGCAGCGCCUGCGCCUC (.(....)...)..((.......................................................)..) >CP001630.1/3075151-3075083 CUUGAUCGAGCCCAGCCACAGCGGCUCGGUGCGGUCCUGACCGUAGGUGGCCAGCAGCGCCUGCGCCUC (.(...))..((.....................................................)..) >EU827593.1/24706-24638 CUUGAGCGAGCCCAGCCACAGCGGCUGCUCGCGGUCCUGCCCGUAGGUGGCGAGCAGCGCCUGCGCCUC (.(..))((........................................................)..) >CT573213.2/2804363-2804289 CUUCAGCGACCCCAGCCACAGCGGGUCGGCCGCGUCCCGGUCCUGCCCGUAGGUCGCCAGGAUCGCCUGCGCCUC (.(.....)..)..((.......................................................)..) >DQ176871.1/41145-41071 CUUCAACGAGCCCAGCCACAGCGGCCGUUCGGCAGGACGCUCCUGCCCGUAGGUGGCCUGGAGCGCCUGCACCUC (.(...))...(..(........................................................)..) >AY310323.2/100244-100318 CUUGAUGGAGCCGAGCAGCAGCGGCCGGUCCUCGGGCCGGUCCUGCCCGUACGUCGCCAGCAGCGCCUGGGCCUC (.(....).)..(.(........................................................)..) >AB193609.1/28918-28992 CUUCACCGCACCCAGCCACAACGGCCGCUCCGCAGAAUGCGCCUGACCAUAGGUGGCCAGCAGCGCCUGUGCCUC (.(.....)..)..((.......................................................)..) >DQ885223.1/16824-16750 CUUCACGGAGCCCAGCCACAGCGGCCGAUCCGCAUCCCGGUCCUGACCAUAGGUGGCCAACAACGCCUGCGCCUC (.(..))(.(.............................................................)..) >AM238664.2/537680-537754 CUUCAAGGACCCCAGCCACAGGGGUCGUUCCGCGUCCCGCUCCUGCCCGUAGGUGGCCAACAGCGCCUGCGCCUC (.(....)..)..((........................................................)..)
3		((C)YU)C C(U(U)) U(AN)G			57	74.0
>ACEY01000056.1/27545-27471 CUUGAGUGAGCCGAGGUACAGGGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC (.(..))(.(.......................................(..)..................)..) >AF440781.1/18383-18309 CUUCACCGACCCGAGCCACAACGGCCGCUCCGCCGAACGCCCUUGGCCGUACGUGGCGAGCAGGGCCUGCGCCUC (.(....))...(.(..................................(..)..................)..) >AB435553.1/54914-54840 CUUCAGCGAACCCAGCCACAACGGCCGGUCCGCCGACCGGGCCUGUCCGUAGGUGGCGAUCAACGCCUGCGCCUC (.(.....)).(..(..................................(..)..................)..) >ABYX01000217.1/5176-5102 CUUCACGGAGCCGAGCCACAGCGGCUGCUCCGCCGGGCGGUCCGCGCCGUACGUCGCGAGCAGGGCCUGCGCCUC (.(..))..((......................................(..)..................)..) >AB241068.1/31162-31088 CUUGAUCGAGCCCAGCCUCAGCGGCCGAUCCUCGGGACGAUCCUGACCGUAGGUGGCAAGCAGCGCCUGAGCCUC (.(....).)....((.................................(..)..................)..) >ABYA01000007.1/18827-18759 CUUCAGCGAACCCAGCCACAGCGGCCGCUCGCGGUCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC (.(..))((..................................(..)..................)..) >AL583917.1/183315-183241 CUUAAUUGAGCCCACCCACAACGGCUGGUCUGCCGGACGUCCCUGCCCAUACGUGGCCAGCAAUGCCUGCGCUUC (.(..))..((......................................(..)..................)..) >FM173265.1/60520-60446 CUUCACCGAGCCCAGCCACAGCGGCCGGCCGUCCGCCCGUUCCUGCCCGUAGGUGGCCAGGAGUGCCUGCGCUUC (.(...)).((......................................(..)..................)..) >DQ116941.2/41188-41114 CUUGAUCGAGCCCAGCCACAGCGGCUGUUCAGGCUCCCGGUCCUGCCCGUAAGUGGCGAGCAGUGCCUGGGCCUC (.(...))...(..(..................................(..)..................)..) >EU301739.1/21169-21243 CUUCACCGAGCCGAGCCACAGCGGCCGGUCCGCGGGCCGGUCCCGCCCGUAGGUGGCCAGCAGCGCGUGCGCCUC (.(...)..)..(.(..................................(..)..................)..) >DQ272522.1/12501-12430 CUUGACCGAGCCGAGCCAGAGGGGUUCGCCCGCCCGUUCCUGGCCGUAGGUGGCCAGCAGGGCCUGUGCCUC (.(...)..)..(.(...............................(..)..................)..) >DQ174320.1/1017-943 CUUCACCGAGCCGAGCAGCAGCGGCCGCUCCGGGUCGCGGUCCUGGCCGUACGCGGCCAGCAGCGCCUGCGCCUC (.(...)..)..(.(..................................(..)..................)..) >AY442225.1/12405-12331 CUUCACCGACCCCAGCCACAGCGGCCGUCCCUCCGGCCGCUCCUGGCCGUAGGUGGCCAUCAGGGCCUGGGCCUC (.(...))...(..(..................................(..)..................)..) >AJ300302.1/38594-38668 CUUCACCGAACCGAGCCAGAGCGGCCGGCCCUCCUCACGCUCCUGCCCGUACGUGGCCAGGAGCGCCUGCGCCUC (.(.....))..(.(..................................(..)..................)..) >EF990140.1/20397-20471 CUUCAACGAGCCCAGCCACAACGGCCGCUCCGCGGGCCGAUCCUGGCCGUAGGUCGCCAGCAACGCCUGCGCCUC (.(..))..(.(.....................................(..)..................)..) >EU443633.1/90996-90922 CUUGACCGAGCCCAGCCACAGCGGCUGGCCCGUGGGCCGGUCCUGCCCGUACGUGGCCAGGAGCGCCUGCGCCUC (.(....).)...((..................................(..)..................)..) >ACEX01000725.1/1517-1443 CUUGAUGGAGCCGAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUACGUGGCCAGCAGCGCCUGCGCCUC (.(..))(.(.......................................(..)..................)..) >AM992894.1/57327-57253 CUUGACGGAGCCCAGCCACAGCGGCCGGUCCGCGGGACGGUCCUGCCCGUACGUGGCGAGCAGCGCCUGCGCCUC (.(..))(.(.......................................(..)..................)..) >AB088224.2/78764-78838 CUUCACCGACCCCAGCCACAACGGCCGACCCGGAUCACGCCCCUGCCCAUACGUCGCCAGCAGCGCCUGCGCCUC (.(...)).((......................................(..)..................)..) >AY354515.1/26777-26703 CUUCAGCGAGCCCAGCCAGAGCGGCUUGGCGGGAUCCCGGUCCCGGCCAUAGGUCGCCAGCAGUGCCUGGGCCUC (.(..))(.(.......................................(..)..................)..) >DQ249341.1/19326-19252 CUUCAAUGACCCCAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUAGGUGGCCAGGAGUGCCUGGGCCUC (.(..)).((.......................................(..)..................)..) >DQ884175.1/58497-58429 CUUCACCGACCCCAGCCACAACGGCUCCUCGCGAUCCUGGCCAUAGGUGGCGAGCAAGGCCUGUGCCUC (.(...))..((...............................(..)..................)..) >AY509120.1/55569-55498 CUUCAACGAACCAAGCCGCAACGGCCGACCCGCAUCCCGCUGCCCAUACGUCGCCAACAACGCCUGCGCCUC (.(.....)).(..(...............................(..)..................)..) >AP009493.1/7331862-7331788 CUUCACCGACCCCAACCACAACGGACGACCCUCCGGCCGGUCCUGGCCGUACGUCGCCAGCAAUGCCUGAGCCUC (.(.....).)..(.(.................................(..)..................)..) >AY373435.1/87516-87590 CUUUACCGACCCCAGCCACAACGGCCGGUCCACCGGACGAUCCUGCCCAUACGUGGCCAGCAGCGCCUGAGCCUC (.(..))(..(......................................(..)..................)..) >ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC (.(..))(.(.......................................(..)..................)..) >AY947889.1/31966-31892 CUUCAACGACCCCAGCCACAGCGGCUGACCCUCCGGCCGCUCCUGCCCGUAGGUGGCCAGGAGCGCCUGGGCCUC (.(...))...(..(..................................(..)..................)..) >AY330485.1/49895-49821 CUUCACCGAACCCAGCCACAGCGGGUGGCCGGCAGGACGGUUCUGCCCGUAGGUGGCCAGCAACGCGUGCGCCUC (.(.....).)..((..................................(..)..................)..) >DQ272520.1/44029-43955 CUUCAACGAGCCGAGCCACAGCGGCCGUUCCGCGGGCCGCCCCUGCCCGUACGUGGCCAGCAGCGCCUGCGCCUC (.(..))..((......................................(..)..................)..) >BA000030.3/3537854-3537780 CUUGACCGAGCCCAGCCACAGCGGCUGCUCGGCGCUCCGCUCCCGGCCGUAGGUGGCCAGCAGCGCCUGUGCCUC (.(...)..)...((..................................(..)..................)..) >AJ278573.1/57317-57243 CUUCACCGACCCCAGCCACAACGGCCGUUCCACAGGCCGCUGUUGGCCGUACGUGGCCAGCAGCGCCUGCGCCUC (.(...))...(..(..................................(..)..................)..) >AP011115.1/4466351-4466422 CUUGACGGAGCCGAGCCACAGCGGCCGGCCCUCCCGGCCCUGCCCGUACGCGGCCAGCAGCGCCUGCGCCUC (.(..))(.(....................................(..)..................)..) >DQ897668.1/47801-47727 CUUGAUCGAGCCGAGCCAGAGCGGCCGCUCCGCUGUGUGCGCCUUGCCGUAGGUCGCCAGCAGCGCCUGCGCCUC (.(....).)..(.(..................................(..)..................)..) >AF453501.1/66079-66147 CUUGACCGAGCCCAGCAGCACCGGUUCGGCCCGGUCCUGCCCGUAGGUGGCCAGGAUCGCCUGCGCCUC (.(..)).((.................................(..)..................)..) >AF357202.1/6136-6062 CUUCACCGAGCCGAGCAGCAGCGGCUUGUCCUCGUCGCGCUGCUGACCGUAGGUGGCGAGCAGCGCCUGCGCCUC (.(...)..)..(.(..................................(..)..................)..) >AF079138.1/34082-34008 CUUCAGCGUCCCCAGCCGCAGCGGCUGCCCCGGGGCGCGCCCCUGCCCGUACGUGGCGAGCAGCGCCUGCGCCUC (.(....)...)..((.................................(..)..................)..) >AF040570.3/33112-33038 CUUGACCGAGCCCAGCCACAGCGGUUGCUGCGGGUCGCGGCCCUGGCCGUAGGUGGCCAGCAGCGCCUGGACCUC (.(....).)...((..................................(..)..................)..) >AL939127.1/37816-37890 CUUCAGCGAGCCCAGGUACAGCGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC (.(..))(.(.......................................(..)..................)..) >ABYC01000016.1/10010-10084 CUUGACCGAGCCGAGCAGCAGCGGCCGGUCCUCCGGGCGGUCCUGGCCGUAGGUGGCGAGGAGCGCCUGGGCCUC (.(...)..)..(.(..................................(..)..................)..) >AB193609.1/28918-28992 CUUCACCGCACCCAGCCACAACGGCCGCUCCGCAGAAUGCGCCUGACCAUAGGUGGCCAGCAGCGCCUGUGCCUC (.(.....)..)..((.................................(..)..................)..) >CP001630.1/3075151-3075083 CUUGAUCGAGCCCAGCCACAGCGGCUCGGUGCGGUCCUGACCGUAGGUGGCCAGCAGCGCCUGCGCCUC (.(...))..((...............................(..)..................)..) >AJ575648.1/7360-7286 CUUCAGCGAGCCGAGCCACAGCGGCUGGUCCGCCGGACGGCCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC (.(...)..)..(.(..................................(..)..................)..) >EU827593.1/24706-24638 CUUGAGCGAGCCCAGCCACAGCGGCUGCUCGCGGUCCUGCCCGUAGGUGGCGAGCAGCGCCUGCGCCUC (.(..))((..................................(..)..................)..) >AM420293.1/4575606-4575680 CUUGAUCGAGCCCAGCCACAGCGGUCGGCCGGCGGGGCGGUCCUGCCCGUAGGUGGCCAGCAACGCCUGGGCCUC (.(...))...(..(..................................(..)..................)..) >DQ983361.1/13526-13452 CUUCAACGACCCCAGCCACAACGGCCGGUCGCCCGGACGGUCCUGGCCAUACGUGGCCAGCAACGCCUGCGCCUC (.(..)).(.(......................................(..)..................)..) >AY310323.2/100244-100318 CUUGAUGGAGCCGAGCAGCAGCGGCCGGUCCUCGGGCCGGUCCUGCCCGUACGUCGCCAGCAGCGCCUGGGCCUC (.(....).)..(.(..................................(..)..................)..) >CT573213.2/2804363-2804289 CUUCAGCGACCCCAGCCACAGCGGGUCGGCCGCGUCCCGGUCCUGCCCGUAGGUCGCCAGGAUCGCCUGCGCCUC (.(.....)..)..((.................................(..)..................)..) >AM238664.2/537680-537754 CUUCAAGGACCCCAGCCACAGGGGUCGUUCCGCGUCCCGCUCCUGCCCGUAGGUGGCCAACAGCGCCUGCGCCUC (.(....)..)..((..................................(..)..................)..) >DQ176871.1/41145-41071 CUUCAACGAGCCCAGCCACAGCGGCCGUUCGGCAGGACGCUCCUGCCCGUAGGUGGCCUGGAGCGCCUGCACCUC (.(...))...(..(..................................(..)..................)..) >AB089954.2/42131-42057 CUUCACCGAGCCGAGCCAGAGCGGUCGUCCCUCCGGUCGCCCCUGCCCGUAGGUGGCCAGCAGCGCCUCGGCCUC (.(..))(.(.......................................(..)..................)..) >DQ149987.1/24965-24891 CUUCAACGAGCCCAGCCAGAGCGGCCGGUCCACCGGGCGGCCCUGGCCGUAGGUGGCCAGCAGUGCCUGUGCCUC (.(..)).((.......................................(..)..................)..) >FJ872525.1/68398-68472 CUUGAUGGAGCCCAGCCAGAGCGGCCGGUUCCCGGGGCGGUCCUGCCCGUAGGUGGCGAGCAGCGCCUGGGCCUC (.(..))(.(.......................................(..)..................)..) >ACHP01000061.1/2873-2947 CUUGAUUGAGCCCACCCACAGCGGCUGCUCCGCUGGACGUCCCUGCCCGUAGGUGGACAGCAAUGCCUGCGCUUC (.(...))...(.(...................................(..)..................)..) >DQ885223.1/16824-16750 CUUCACGGAGCCCAGCCACAGCGGCCGAUCCGCAUCCCGGUCCUGACCAUAGGUGGCCAACAACGCCUGCGCCUC (.(..))(.(.......................................(..)..................)..) >AB363939.1/62008-62082 CUUCACCGAGCCCAGCCACAACGGCUGUUCCCCGGAACGCUCCUGGCCAUAUGUGUCGAGCAGGGCCUGGGCUUC (.(..))(.(.......................................(..)..................)..) >ACES01000072.1/521-453 CUUGAGCGAGCCGAGCCAGAGCGGCCGGUCCCGGUCCUGGCCGUAGGUGGCCAGGAGCGCCUGGGCCUC (.(..))(.(.................................(..)..................)..) >AB070940.1/62113-62039 CUUCACGGAGCCGAGCCACAGCGGCCGGUCGGCCGGACGGUCCUGCCCAUAGGUGGCCAGCAGCGCCUGGGCCUC (.(...)..)..(.(..................................(..)..................)..)
4		((C)YU)C C(U(U)) U(AN)G N(N(R)())			46	59.7
>DQ983361.1/13526-13452 CUUCAACGACCCCAGCCACAACGGCCGGUCGCCCGGACGGUCCUGGCCAUACGUGGCCAGCAACGCCUGCGCCUC (.(..)).(.(.......(.(..................)(........(..)........))........)..) >DQ116941.2/41188-41114 CUUGAUCGAGCCCAGCCACAGCGGCUGUUCAGGCUCCCGGUCCUGCCCGUAAGUGGCGAGCAGUGCCUGGGCCUC (.(...))...(..(...(.(..............)..(..........(..)........))........)..) >EU301739.1/21169-21243 CUUCACCGAGCCGAGCCACAGCGGCCGGUCCGCGGGCCGGUCCCGCCCGUAGGUGGCCAGCAGCGCGUGCGCCUC (.(...)..)..(.(......(.(................)(.......(..).....))...........)..) >AY442225.1/12405-12331 CUUCACCGACCCCAGCCACAGCGGCCGUCCCUCCGGCCGCUCCUGGCCGUAGGUGGCCAUCAGGGCCUGGGCCUC (.(...))...(..(...(.(..................)(........(..)........))........)..) >AB241068.1/31162-31088 CUUGAUCGAGCCCAGCCUCAGCGGCCGAUCCUCGGGACGAUCCUGACCGUAGGUGGCAAGCAGCGCCUGAGCCUC (.(....).)....((........(.(..............)(......(..)......)..)........)..) >AF079138.1/34082-34008 CUUCAGCGUCCCCAGCCGCAGCGGCUGCCCCGGGGCGCGCCCCUGCCCGUACGUGGCGAGCAGCGCCUGCGCCUC (.(....)...)..((....(.(.................)(.......(..)......))..........)..) >AM992894.1/57327-57253 CUUGACGGAGCCCAGCCACAGCGGCCGGUCCGCGGGACGGUCCUGCCCGUACGUGGCGAGCAGCGCCUGCGCCUC (.(..))(.(..........(.(..................)(......(..).........)).......)..) >EF990140.1/20397-20471 CUUCAACGAGCCCAGCCACAACGGCCGCUCCGCGGGCCGAUCCUGGCCGUAGGUCGCCAGCAACGCCUGCGCCUC (.(..))..(.(......(.(..................)(........(..)........))........)..) >AY947889.1/31966-31892 CUUCAACGACCCCAGCCACAGCGGCUGACCCUCCGGCCGCUCCUGCCCGUAGGUGGCCAGGAGCGCCUGGGCCUC (.(...))...(..(.....(.(..............).(.........(..).........)).......)..) >FM173265.1/60520-60446 CUUCACCGAGCCCAGCCACAGCGGCCGGCCGUCCGCCCGUUCCUGCCCGUAGGUGGCCAGGAGUGCCUGCGCUUC (.(...)).((.......(.(..............)....(........(..)........))........)..) >BA000030.3/3537854-3537780 CUUGACCGAGCCCAGCCACAGCGGCUGCUCGGCGCUCCGCUCCCGGCCGUAGGUGGCCAGCAGCGCCUGUGCCUC (.(...)..)...((.....(.(.............)(...........(..)...........)).....)..) >AM420293.1/4575606-4575680 CUUGAUCGAGCCCAGCCACAGCGGUCGGCCGGCGGGGCGGUCCUGCCCGUAGGUGGCCAGCAACGCCUGGGCCUC (.(...))...(..(.........(.(..............)(......(..)......).).........)..) >AL583917.1/183315-183241 CUUAAUUGAGCCCACCCACAACGGCUGGUCUGCCGGACGUCCCUGCCCAUACGUGGCCAGCAAUGCCUGCGCUUC (.(..))..((......(.(................)..(.........(..).........)).......)..) >AY373435.1/87516-87590 CUUUACCGACCCCAGCCACAACGGCCGGUCCACCGGACGAUCCUGCCCAUACGUGGCCAGCAGCGCCUGAGCCUC (.(..))(..(.......(.(.................).(........(..)........))........)..) >ABYA01000007.1/18827-18759 CUUCAGCGAACCCAGCCACAGCGGCCGCUCGCGGUCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC (.(..))((.........(.(..............)(......(..)......)..)........)..) >DQ272520.1/44029-43955 CUUCAACGAGCCGAGCCACAGCGGCCGUUCCGCGGGCCGCCCCUGCCCGUACGUGGCCAGCAGCGCCUGCGCCUC (.(..))..((.......(.(..................)(........(..)........))........)..) >DQ249341.1/19326-19252 CUUCAAUGACCCCAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUAGGUGGCCAGGAGUGCCUGGGCCUC (.(..)).((........(.(..................)(........(..)........))........)..) >AY310323.2/100244-100318 CUUGAUGGAGCCGAGCAGCAGCGGCCGGUCCUCGGGCCGGUCCUGCCCGUACGUCGCCAGCAGCGCCUGGGCCUC (.(....).)..(.(.....(.(..................)(......(..)......).).........)..) >ABYC01000016.1/10010-10084 CUUGACCGAGCCGAGCAGCAGCGGCCGGUCCUCCGGGCGGUCCUGGCCGUAGGUGGCGAGGAGCGCCUGGGCCUC (.(...)..)..(.(......(.(.............)(..........(..)..........))......)..) >AJ300302.1/38594-38668 CUUCACCGAACCGAGCCAGAGCGGCCGGCCCUCCUCACGCUCCUGCCCGUACGUGGCCAGGAGCGCCUGCGCCUC (.(.....))..(.(......(.(.............)(..........(..)..........))......)..) >AJ575648.1/7360-7286 CUUCAGCGAGCCGAGCCACAGCGGCUGGUCCGCCGGACGGCCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC (.(...)..)..(.(.....(.(..............)....(......(..)......))..........)..) >ACEX01000725.1/1517-1443 CUUGAUGGAGCCGAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUACGUGGCCAGCAGCGCCUGCGCCUC (.(..))(.(........(.(..................)(........(..)........))........)..) >ACEY01000056.1/27545-27471 CUUGAGUGAGCCGAGGUACAGGGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC (.(..))(.(........(.(.................).(........(..)........))........)..) >AF357202.1/6136-6062 CUUCACCGAGCCGAGCAGCAGCGGCUUGUCCUCGUCGCGCUGCUGACCGUAGGUGGCGAGCAGCGCCUGCGCCUC (.(...)..)..(.(......(.(.............)(..........(..)..........))......)..) >EU443633.1/90996-90922 CUUGACCGAGCCCAGCCACAGCGGCUGGCCCGUGGGCCGGUCCUGCCCGUACGUGGCCAGGAGCGCCUGCGCCUC (.(....).)...((......(.(................)(.......(..).......).)........)..) >AP009493.1/7331862-7331788 CUUCACCGACCCCAACCACAACGGACGACCCUCCGGCCGGUCCUGGCCGUACGUCGCCAGCAAUGCCUGAGCCUC (.(.....))...(.(....(.(..................)(......(..)......))..........)..) >ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC (.(..))(.(........(.(................)..(........(..)........))........)..) >AP011115.1/4466351-4466422 CUUGACGGAGCCGAGCCACAGCGGCCGGCCCUCCCGGCCCUGCCCGUACGCGGCCAGCAGCGCCUGCGCCUC (.(..))(.(..........(.(...............)(......(..)......).).........)..) >AM238664.2/537680-537754 CUUCAAGGACCCCAGCCACAGGGGUCGUUCCGCGUCCCGCUCCUGCCCGUAGGUGGCCAACAGCGCCUGCGCCUC (.(....)..)..((.....(.(.............)(...........(..)...........)).....)..) >FJ872525.1/68398-68472 CUUGAUGGAGCCCAGCCAGAGCGGCCGGUUCCCGGGGCGGUCCUGCCCGUAGGUGGCGAGCAGCGCCUGGGCCUC (.(..))(.(..........(.(..................)(......(..).........)).......)..) >AB089954.2/42131-42057 CUUCACCGAGCCGAGCCAGAGCGGUCGUCCCUCCGGUCGCCCCUGCCCGUAGGUGGCCAGCAGCGCCUCGGCCUC (.(..))(.(........(.(..................)(........(..).........)).......)..) >ACES01000072.1/521-453 CUUGAGCGAGCCGAGCCAGAGCGGCCGGUCCCGGUCCUGGCCGUAGGUGGCCAGGAGCGCCUGGGCCUC (.(..))(.(......(.(............)(..........(..)..........))......)..) >ACHP01000061.1/2873-2947 CUUGAUUGAGCCCACCCACAGCGGCUGCUCCGCUGGACGUCCCUGCCCGUAGGUGGACAGCAAUGCCUGCGCUUC (.(...))...(.(......(.(..................)(......(..)......))..........)..) >AJ278573.1/57317-57243 CUUCACCGACCCCAGCCACAACGGCCGUUCCACAGGCCGCUGUUGGCCGUACGUGGCCAGCAGCGCCUGCGCCUC (.(...))...(..(.....(.(..............)(..........(..)..........))......)..) >AB193609.1/28918-28992 CUUCACCGCACCCAGCCACAACGGCCGCUCCGCAGAAUGCGCCUGACCAUAGGUGGCCAGCAGCGCCUGUGCCUC (.(.....)..)..((........(.(............)(........(..)..........))......)..) >AF040570.3/33112-33038 CUUGACCGAGCCCAGCCACAGCGGUUGCUGCGGGUCGCGGCCCUGGCCGUAGGUGGCCAGCAGCGCCUGGACCUC (.(....).)...((.........(.(.............)(.......(..).......)).........)..) >DQ272522.1/12501-12430 CUUGACCGAGCCGAGCCAGAGGGGUUCGCCCGCCCGUUCCUGGCCGUAGGUGGCCAGCAGGGCCUGUGCCUC (.(...)..)..(.(......(.(..........).(.........(..).........)..).....)..) >AF453501.1/66079-66147 CUUGACCGAGCCCAGCAGCACCGGUUCGGCCCGGUCCUGCCCGUAGGUGGCCAGGAUCGCCUGCGCCUC (.(..)).((.......(.(..............)(.......(..).......)..).......)..) >ABYX01000217.1/5176-5102 CUUCACGGAGCCGAGCCACAGCGGCUGCUCCGCCGGGCGGUCCGCGCCGUACGUCGCGAGCAGGGCCUGCGCCUC (.(..))..((.......(.(..............)..(..........(..)........))........)..) >AY509120.1/55569-55498 CUUCAACGAACCAAGCCGCAACGGCCGACCCGCAUCCCGCUGCCCAUACGUCGCCAACAACGCCUGCGCCUC (.(.....)).(..(.....(.(............).(........(..)........)....)....)..) >AB363939.1/62008-62082 CUUCACCGAGCCCAGCCACAACGGCUGUUCCCCGGAACGCUCCUGGCCAUAUGUGUCGAGCAGGGCCUGGGCUUC (.(..))(.(........(.(..................)(........(..)........))........)..) >DQ174320.1/1017-943 CUUCACCGAGCCGAGCAGCAGCGGCCGCUCCGGGUCGCGGUCCUGGCCGUACGCGGCCAGCAGCGCCUGCGCCUC (.(...)..)..(.(......(.(................)(.......(..).......).)........)..) >AB070940.1/62113-62039 CUUCACGGAGCCGAGCCACAGCGGCCGGUCGGCCGGACGGUCCUGCCCAUAGGUGGCCAGCAGCGCCUGGGCCUC (.(...)..)..(.(.....(.(..............).(.........(..).........)).......)..) >DQ149987.1/24965-24891 CUUCAACGAGCCCAGCCAGAGCGGCCGGUCCACCGGGCGGCCCUGGCCGUAGGUGGCCAGCAGUGCCUGUGCCUC (.(..)).((........(.(..................)(........(..)........))........)..) >DQ885223.1/16824-16750 CUUCACGGAGCCCAGCCACAGCGGCCGAUCCGCAUCCCGGUCCUGACCAUAGGUGGCCAACAACGCCUGCGCCUC (.(..))(.(.......(.(................)..(.........(..).........)).......)..) >AL939127.1/37816-37890 CUUCAGCGAGCCCAGGUACAGCGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC (.(..))(.(........(.(.................).(........(..)........))........)..)
5		((C)YU)C C(U(U)) U(AN)G N(N(R)()) (NCNN)			26	33.8
>AL583917.1/183315-183241 CUUAAUUGAGCCCACCCACAACGGCUGGUCUGCCGGACGUCCCUGCCCAUACGUGGCCAGCAAUGCCUGCGCUUC (.(..))..((......(.(.......(....)...)..(.........(..).........)).......)..) >DQ885223.1/16824-16750 CUUCACGGAGCCCAGCCACAGCGGCCGAUCCGCAUCCCGGUCCUGACCAUAGGUGGCCAACAACGCCUGCGCCUC (.(..))(.(.......(.(........(....)..)..(.........(..).........)).......)..) >FM173265.1/60520-60446 CUUCACCGAGCCCAGCCACAGCGGCCGGCCGUCCGCCCGUUCCUGCCCGUAGGUGGCCAGGAGUGCCUGCGCUUC (.(...)).((.......(.(......(....)..)....(........(..)........))........)..) >AB089954.2/42131-42057 CUUCACCGAGCCGAGCCAGAGCGGUCGUCCCUCCGGUCGCCCCUGCCCGUAGGUGGCCAGCAGCGCCUCGGCCUC (.(..))(.(........(.(......(....)......)(........(..).........)).......)..) >AF453501.1/66079-66147 CUUGACCGAGCCCAGCAGCACCGGUUCGGCCCGGUCCUGCCCGUAGGUGGCCAGGAUCGCCUGCGCCUC (.(..)).((.......(.(....(....)....)(.......(..).......)..).......)..) >DQ249341.1/19326-19252 CUUCAAUGACCCCAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUAGGUGGCCAGGAGUGCCUGGGCCUC (.(..)).((........(.(......(....)......)(........(..)........))........)..) >ABYC01000016.1/10010-10084 CUUGACCGAGCCGAGCAGCAGCGGCCGGUCCUCCGGGCGGUCCUGGCCGUAGGUGGCGAGGAGCGCCUGGGCCUC (.(...)..)..(.(......(.(...(....)....)(..........(..)..........))......)..) >AB363939.1/62008-62082 CUUCACCGAGCCCAGCCACAACGGCUGUUCCCCGGAACGCUCCUGGCCAUAUGUGUCGAGCAGGGCCUGGGCUUC (.(..))(.(........(.(........(....)....)(........(..)........))........)..) >AP011115.1/4466351-4466422 CUUGACGGAGCCGAGCCACAGCGGCCGGCCCUCCCGGCCCUGCCCGUACGCGGCCAGCAGCGCCUGCGCCUC (.(..))(.(..........(.(.....(....)....)(......(..)......).).........)..) >DQ983361.1/13526-13452 CUUCAACGACCCCAGCCACAACGGCCGGUCGCCCGGACGGUCCUGGCCAUACGUGGCCAGCAACGCCUGCGCCUC (.(..)).(.(.......(.(......(....)......)(........(..)........))........)..) >DQ272522.1/12501-12430 CUUGACCGAGCCGAGCCAGAGGGGUUCGCCCGCCCGUUCCUGGCCGUAGGUGGCCAGCAGGGCCUGUGCCUC (.(....).)..(.(...(.(.....(....).)(...........(..)...........).)....)..) >AY947889.1/31966-31892 CUUCAACGACCCCAGCCACAGCGGCUGACCCUCCGGCCGCUCCUGCCCGUAGGUGGCCAGGAGCGCCUGGGCCUC (.(...))...(..(.....(.(....(....)....).(.........(..).........)).......)..) >DQ116941.2/41188-41114 CUUGAUCGAGCCCAGCCACAGCGGCUGUUCAGGCUCCCGGUCCUGCCCGUAAGUGGCGAGCAGUGCCUGGGCCUC (.(...))...(..(...(.(......(....)..)..(..........(..)........))........)..) >ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC (.(..))(.(........(.(......(....)....)..(........(..)........))........)..) >AB070940.1/62113-62039 CUUCACGGAGCCGAGCCACAGCGGCCGGUCGGCCGGACGGUCCUGCCCAUAGGUGGCCAGCAGCGCCUGGGCCUC (.(...)..)..(.(.....(.(....(....)....).(.........(..).........)).......)..) >FJ872525.1/68398-68472 CUUGAUGGAGCCCAGCCAGAGCGGCCGGUUCCCGGGGCGGUCCUGCCCGUAGGUGGCGAGCAGCGCCUGGGCCUC (.(..))(.(..........(.(.......(....).....)(......(..).........)).......)..) >DQ149987.1/24965-24891 CUUCAACGAGCCCAGCCAGAGCGGCCGGUCCACCGGGCGGCCCUGGCCGUAGGUGGCCAGCAGUGCCUGUGCCUC (.(..)).((........(.(......(....)......)(........(..)........))........)..) >AY373435.1/87516-87590 CUUUACCGACCCCAGCCACAACGGCCGGUCCACCGGACGAUCCUGCCCAUACGUGGCCAGCAGCGCCUGAGCCUC (.(..))(..(.......(.(......(....).....).(........(..)........))........)..) >DQ174320.1/1017-943 CUUCACCGAGCCGAGCAGCAGCGGCCGCUCCGGGUCGCGGUCCUGGCCGUACGCGGCCAGCAGCGCCUGCGCCUC (.(...)..)..(.(......(.(....(....)......)(.......(..).......).)........)..) >AP009493.1/7331862-7331788 CUUCACCGACCCCAACCACAACGGACGACCCUCCGGCCGGUCCUGGCCGUACGUCGCCAGCAAUGCCUGAGCCUC (.(.....))...(.(....(.(.......(....).....)(......(..)......))..........)..) >AL939127.1/37816-37890 CUUCAGCGAGCCCAGGUACAGCGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC (.(..))(.(........(.(......(....).....).(........(..)........))........)..) >AF357202.1/6136-6062 CUUCACCGAGCCGAGCAGCAGCGGCUUGUCCUCGUCGCGCUGCUGACCGUAGGUGGCGAGCAGCGCCUGCGCCUC (.(...)..)..(.(......(.(...(....)....)(..........(..)..........))......)..) >AY442225.1/12405-12331 CUUCACCGACCCCAGCCACAGCGGCCGUCCCUCCGGCCGCUCCUGGCCGUAGGUGGCCAUCAGGGCCUGGGCCUC (.(...))...(..(...(.(......(....)......)(........(..)........))........)..) >ACEY01000056.1/27545-27471 CUUGAGUGAGCCGAGGUACAGGGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC (.(..))(.(........(.(......(....).....).(........(..)........))........)..) >ACEX01000725.1/1517-1443 CUUGAUGGAGCCGAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUACGUGGCCAGCAGCGCCUGCGCCUC (.(..))(.(........(.(......(....)......)(........(..)........))........)..) >EF990140.1/20397-20471 CUUCAACGAGCCCAGCCACAACGGCCGCUCCGCGGGCCGAUCCUGGCCGUAGGUCGCCAGCAACGCCUGCGCCUC (.(..)).((........(.(.........(....)...)(........(..)........))........)..)

>AB070940.1/62113-62039 CUUCACGGAGCCGAGCCACAGCGGCCGGUCGGCCGGACGGUCCUGCCCAUAGGUGGCCAGCAGCGCCUGGGCCUC ............(.(........................................................)..) (.(...)..)..(.(........................................................)..) (.(...)..)..(.(..................................(..)..................)..) (.(...)..)..(.(.....(.(..............).(.........(..).........)).......)..) (.(...)..)..(.(.....(.(....(....)....).(.........(..).........)).......)..) >DQ885223.1/16824-16750 CUUCACGGAGCCCAGCCACAGCGGCCGAUCCGCAUCCCGGUCCUGACCAUAGGUGGCCAACAACGCCUGCGCCUC .......(.(.............................................................)..) (.(..))(.(.............................................................)..) (.(..))(.(.......................................(..)..................)..) (.(..))(.(.......(.(................)..(.........(..).........)).......)..) (.(..))(.(.......(.(........(....)..)..(.........(..).........)).......)..) >FJ872525.1/68398-68472 CUUGAUGGAGCCCAGCCAGAGCGGCCGGUUCCCGGGGCGGUCCUGCCCGUAGGUGGCGAGCAGCGCCUGGGCCUC .......(.(.............................................................)..) (.(..))(.(.............................................................)..) (.(..))(.(.......................................(..)..................)..) (.(..))(.(..........(.(..................)(......(..).........)).......)..) (.(..))(.(..........(.(.......(....).....)(......(..).........)).......)..) >ACEX01000725.1/1517-1443 CUUGAUGGAGCCGAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUACGUGGCCAGCAGCGCCUGCGCCUC .......(.(.............................................................)..) (.(..))(.(.............................................................)..) (.(..))(.(.......................................(..)..................)..) (.(..))(.(........(.(..................)(........(..)........))........)..) (.(..))(.(........(.(......(....)......)(........(..)........))........)..) >DQ249341.1/19326-19252 CUUCAAUGACCCCAGCCACAGCGGCUGAUCCUCCGGCCGCUCCUGACCGUAGGUGGCCAGGAGUGCCUGGGCCUC ........((.............................................................)..) (.(..)).((.............................................................)..) (.(..)).((.......................................(..)..................)..) (.(..)).((........(.(..................)(........(..)........))........)..) (.(..)).((........(.(......(....)......)(........(..)........))........)..) >AB089954.2/42131-42057 CUUCACCGAGCCGAGCCAGAGCGGUCGUCCCUCCGGUCGCCCCUGCCCGUAGGUGGCCAGCAGCGCCUCGGCCUC .......(.(.............................................................)..) (.(..))(.(.............................................................)..) (.(..))(.(.......................................(..)..................)..) (.(..))(.(........(.(..................)(........(..).........)).......)..) (.(..))(.(........(.(......(....)......)(........(..).........)).......)..) >DQ272522.1/12501-12430 CUUGACCGAGCCGAGCCAGAGGGGUUCGCCCGCCCGUUCCUGGCCGUAGGUGGCCAGCAGGGCCUGUGCCUC ............(.(.....................................................)..) (.(...)..)..(.(.....................................................)..) (.(...)..)..(.(...............................(..)..................)..) (.(...)..)..(.(......(.(..........).(.........(..).........)..).....)..) (.(....).)..(.(...(.(.....(....).)(...........(..)...........).)....)..) >DQ983361.1/13526-13452 CUUCAACGACCCCAGCCACAACGGCCGGUCGCCCGGACGGUCCUGGCCAUACGUGGCCAGCAACGCCUGCGCCUC ........(.(............................................................)..) (.(..)).(.(............................................................)..) (.(..)).(.(......................................(..)..................)..) (.(..)).(.(.......(.(..................)(........(..)........))........)..) (.(..)).(.(.......(.(......(....)......)(........(..)........))........)..) >AL939127.1/37816-37890 CUUCAGCGAGCCCAGGUACAGCGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC .......(.(.............................................................)..) (.(..))(.(.............................................................)..) (.(..))(.(.......................................(..)..................)..) (.(..))(.(........(.(.................).(........(..)........))........)..) (.(..))(.(........(.(......(....).....).(........(..)........))........)..) >AY373435.1/87516-87590 CUUUACCGACCCCAGCCACAACGGCCGGUCCACCGGACGAUCCUGCCCAUACGUGGCCAGCAGCGCCUGAGCCUC .......(..(............................................................)..) (.(..))(..(............................................................)..) (.(..))(..(......................................(..)..................)..) (.(..))(..(.......(.(.................).(........(..)........))........)..) (.(..))(..(.......(.(......(....).....).(........(..)........))........)..) >AY947889.1/31966-31892 CUUCAACGACCCCAGCCACAGCGGCUGACCCUCCGGCCGCUCCUGCCCGUAGGUGGCCAGGAGCGCCUGGGCCUC ...........(..(........................................................)..) (.(...))...(..(........................................................)..) (.(...))...(..(..................................(..)..................)..) (.(...))...(..(.....(.(..............).(.........(..).........)).......)..) (.(...))...(..(.....(.(....(....)....).(.........(..).........)).......)..) >AL583917.1/183315-183241 CUUAAUUGAGCCCACCCACAACGGCUGGUCUGCCGGACGUCCCUGCCCAUACGUGGCCAGCAAUGCCUGCGCUUC .........((............................................................)..) (.(..))..((............................................................)..) (.(..))..((......................................(..)..................)..) (.(..))..((......(.(................)..(.........(..).........)).......)..) (.(..))..((......(.(.......(....)...)..(.........(..).........)).......)..) >EF990140.1/20397-20471 CUUCAACGAGCCCAGCCACAACGGCCGCUCCGCGGGCCGAUCCUGGCCGUAGGUCGCCAGCAACGCCUGCGCCUC .........(.(...........................................................)..) (.(..))..(.(...........................................................)..) (.(..))..(.(.....................................(..)..................)..) (.(..))..(.(......(.(..................)(........(..)........))........)..) (.(..)).((........(.(.........(....)...)(........(..)........))........)..) >ACEY01000056.1/27545-27471 CUUGAGUGAGCCGAGGUACAGGGGCCGGCCCUCCGCCCGGUCCUGGCCGUACGUCGCCAGCAGUGCCUGGGCCUC .......(.(.............................................................)..) (.(..))(.(.............................................................)..) (.(..))(.(.......................................(..)..................)..) (.(..))(.(........(.(.................).(........(..)........))........)..) (.(..))(.(........(.(......(....).....).(........(..)........))........)..) >AP009493.1/7331862-7331788 CUUCACCGACCCCAACCACAACGGACGACCCUCCGGCCGGUCCUGGCCGUACGUCGCCAGCAAUGCCUGAGCCUC .............(.(.......................................................)..) (.(.....).)..(.(.......................................................)..) (.(.....).)..(.(.................................(..)..................)..) (.(.....))...(.(....(.(..................)(......(..)......))..........)..) (.(.....))...(.(....(.(.......(....).....)(......(..)......))..........)..) >FM173265.1/60520-60446 CUUCACCGAGCCCAGCCACAGCGGCCGGCCGUCCGCCCGUUCCUGCCCGUAGGUGGCCAGGAGUGCCUGCGCUUC .........((............................................................)..) (.(...)).((............................................................)..) (.(...)).((......................................(..)..................)..) (.(...)).((.......(.(..............)....(........(..)........))........)..) (.(...)).((.......(.(......(....)..)....(........(..)........))........)..) >AY442225.1/12405-12331 CUUCACCGACCCCAGCCACAGCGGCCGUCCCUCCGGCCGCUCCUGGCCGUAGGUGGCCAUCAGGGCCUGGGCCUC ...........(..(........................................................)..) (.(...))...(..(........................................................)..) (.(...))...(..(..................................(..)..................)..) (.(...))...(..(...(.(..................)(........(..)........))........)..) (.(...))...(..(...(.(......(....)......)(........(..)........))........)..) >AP011115.1/4466351-4466422 CUUGACGGAGCCGAGCCACAGCGGCCGGCCCUCCCGGCCCUGCCCGUACGCGGCCAGCAGCGCCUGCGCCUC .......(.(..........................................................)..) (.(..))(.(..........................................................)..) (.(..))(.(....................................(..)..................)..) (.(..))(.(..........(.(...............)(......(..)......).).........)..) (.(..))(.(..........(.(.....(....)....)(......(..)......).).........)..) >ABYC01000016.1/10010-10084 CUUGACCGAGCCGAGCAGCAGCGGCCGGUCCUCCGGGCGGUCCUGGCCGUAGGUGGCGAGGAGCGCCUGGGCCUC ............(.(........................................................)..) (.(...)..)..(.(........................................................)..) (.(...)..)..(.(..................................(..)..................)..) (.(...)..)..(.(......(.(.............)(..........(..)..........))......)..) (.(...)..)..(.(......(.(...(....)....)(..........(..)..........))......)..) >DQ174320.1/1017-943 CUUCACCGAGCCGAGCAGCAGCGGCCGCUCCGGGUCGCGGUCCUGGCCGUACGCGGCCAGCAGCGCCUGCGCCUC ............(.(........................................................)..) (.(...)..)..(.(........................................................)..) (.(...)..)..(.(..................................(..)..................)..) (.(...)..)..(.(......(.(................)(.......(..).......).)........)..) (.(...)..)..(.(......(.(....(....)......)(.......(..).......).)........)..) >DQ149987.1/24965-24891 CUUCAACGAGCCCAGCCAGAGCGGCCGGUCCACCGGGCGGCCCUGGCCGUAGGUGGCCAGCAGUGCCUGUGCCUC ........((.............................................................)..) (.(..)).((.............................................................)..) (.(..)).((.......................................(..)..................)..) (.(..)).((........(.(..................)(........(..)........))........)..) (.(..)).((........(.(......(....)......)(........(..)........))........)..) >AF357202.1/6136-6062 CUUCACCGAGCCGAGCAGCAGCGGCUUGUCCUCGUCGCGCUGCUGACCGUAGGUGGCGAGCAGCGCCUGCGCCUC ............(.(........................................................)..) (.(...)..)..(.(........................................................)..) (.(...)..)..(.(..................................(..)..................)..) (.(...)..)..(.(......(.(.............)(..........(..)..........))......)..) (.(...)..)..(.(......(.(...(....)....)(..........(..)..........))......)..) >AB363939.1/62008-62082 CUUCACCGAGCCCAGCCACAACGGCUGUUCCCCGGAACGCUCCUGGCCAUAUGUGUCGAGCAGGGCCUGGGCUUC .......(.(.............................................................)..) (.(..))(.(.............................................................)..) (.(..))(.(.......................................(..)..................)..) (.(..))(.(........(.(..................)(........(..)........))........)..) (.(..))(.(........(.(........(....)....)(........(..)........))........)..) >AF453501.1/66079-66147 CUUGACCGAGCCCAGCAGCACCGGUUCGGCCCGGUCCUGCCCGUAGGUGGCCAGGAUCGCCUGCGCCUC ........((.......................................................)..) (.(..)).((.......................................................)..) (.(..)).((.................................(..)..................)..) (.(..)).((.......(.(..............)(.......(..).......)..).......)..) (.(..)).((.......(.(....(....)....)(.......(..).......)..).......)..) >DQ116941.2/41188-41114 CUUGAUCGAGCCCAGCCACAGCGGCUGUUCAGGCUCCCGGUCCUGCCCGUAAGUGGCGAGCAGUGCCUGGGCCUC ...........(..(........................................................)..) (.(...))...(..(........................................................)..) (.(...))...(..(..................................(..)..................)..) (.(...))...(..(...(.(..............)..(..........(..)........))........)..) (.(...))...(..(...(.(......(....)..)..(..........(..)........))........)..) >ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC ......(..(.............................................................)..) (.(..))(.(.............................................................)..) (.(..))(.(.......................................(..)..................)..) (.(..))(.(........(.(................)..(........(..)........))........)..) (.(..))(.(........(.(......(....)....)..(........(..)........))........)..) >AJ278573.1/57317-57243 CUUCACCGACCCCAGCCACAACGGCCGUUCCACAGGCCGCUGUUGGCCGUACGUGGCCAGCAGCGCCUGCGCCUC ...........(..(........................................................)..) (.(...))...(..(........................................................)..) (.(...))...(..(..................................(..)..................)..) (.(...))...(..(.....(.(..............)(..........(..)..........))......)..) >AM992894.1/57327-57253 CUUGACGGAGCCCAGCCACAGCGGCCGGUCCGCGGGACGGUCCUGCCCGUACGUGGCGAGCAGCGCCUGCGCCUC .......(.(.............................................................)..) (.(..))(.(.............................................................)..) (.(..))(.(.......................................(..)..................)..) (.(..))(.(..........(.(..................)(......(..).........)).......)..) >AM420293.1/4575606-4575680 CUUGAUCGAGCCCAGCCACAGCGGUCGGCCGGCGGGGCGGUCCUGCCCGUAGGUGGCCAGCAACGCCUGGGCCUC ...........(..(........................................................)..) (.(...))...(..(........................................................)..) (.(...))...(..(..................................(..)..................)..) (.(...))...(..(.........(.(..............)(......(..)......).).........)..) >AB241068.1/31162-31088 CUUGAUCGAGCCCAGCCUCAGCGGCCGAUCCUCGGGACGAUCCUGACCGUAGGUGGCAAGCAGCGCCUGAGCCUC ..............((.......................................................)..) (.(....).)....((.......................................................)..) (.(....).)....((.................................(..)..................)..) (.(....).)....((........(.(..............)(......(..)......)..)........)..) >EU301739.1/21169-21243 CUUCACCGAGCCGAGCCACAGCGGCCGGUCCGCGGGCCGGUCCCGCCCGUAGGUGGCCAGCAGCGCGUGCGCCUC ............(.(........................................................)..) (.(...)..)..(.(........................................................)..) (.(...)..)..(.(..................................(..)..................)..) (.(...)..)..(.(......(.(................)(.......(..).....))...........)..) >BA000030.3/3537854-3537780 CUUGACCGAGCCCAGCCACAGCGGCUGCUCGGCGCUCCGCUCCCGGCCGUAGGUGGCCAGCAGCGCCUGUGCCUC .............((........................................................)..) (.(...)..)...((........................................................)..) (.(...)..)...((..................................(..)..................)..) (.(...)..)...((.....(.(.............)(...........(..)...........)).....)..) >DQ272520.1/44029-43955 CUUCAACGAGCCGAGCCACAGCGGCCGUUCCGCGGGCCGCCCCUGCCCGUACGUGGCCAGCAGCGCCUGCGCCUC .........((............................................................)..) (.(..))..((............................................................)..) (.(..))..((......................................(..)..................)..) (.(..))..((.......(.(..................)(........(..)........))........)..) >AY509120.1/55569-55498 CUUCAACGAACCAAGCCGCAACGGCCGACCCGCAUCCCGCUGCCCAUACGUCGCCAACAACGCCUGCGCCUC ...........(..(.....................................................)..) (.(.....)).(..(.....................................................)..) (.(.....)).(..(...............................(..)..................)..) (.(.....)).(..(.....(.(............).(........(..)........)....)....)..) >AJ300302.1/38594-38668 CUUCACCGAACCGAGCCAGAGCGGCCGGCCCUCCUCACGCUCCUGCCCGUACGUGGCCAGGAGCGCCUGCGCCUC ............(.(........................................................)..) (.(.....))..(.(........................................................)..) (.(.....))..(.(..................................(..)..................)..) (.(.....))..(.(......(.(.............)(..........(..)..........))......)..) >AB193609.1/28918-28992 CUUCACCGCACCCAGCCACAACGGCCGCUCCGCAGAAUGCGCCUGACCAUAGGUGGCCAGCAGCGCCUGUGCCUC ..............((.......................................................)..) (.(.....)..)..((.......................................................)..) (.(.....)..)..((.................................(..)..................)..) (.(.....)..)..((........(.(............)(........(..)..........))......)..) >AF079138.1/34082-34008 CUUCAGCGUCCCCAGCCGCAGCGGCUGCCCCGGGGCGCGCCCCUGCCCGUACGUGGCGAGCAGCGCCUGCGCCUC ..............((.......................................................)..) (.(....)...)..((.......................................................)..) (.(....)...)..((.................................(..)..................)..) (.(....)...)..((....(.(.................)(.......(..)......))..........)..) >ABYA01000007.1/18827-18759 CUUCAGCGAACCCAGCCACAGCGGCCGCUCGCGGUCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC .......((........................................................)..) (.(..))((........................................................)..) (.(..))((..................................(..)..................)..) (.(..))((.........(.(..............)(......(..)......)..)........)..) >ACES01000072.1/521-453 CUUGAGCGAGCCGAGCCAGAGCGGCCGGUCCCGGUCCUGGCCGUAGGUGGCCAGGAGCGCCUGGGCCUC .......(.(.......................................................)..) (.(..))(.(.......................................................)..) (.(..))(.(.................................(..)..................)..) (.(..))(.(......(.(............)(..........(..)..........))......)..) >AF040570.3/33112-33038 CUUGACCGAGCCCAGCCACAGCGGUUGCUGCGGGUCGCGGCCCUGGCCGUAGGUGGCCAGCAGCGCCUGGACCUC .............((........................................................)..) (.(....).)...((........................................................)..) (.(....).)...((..................................(..)..................)..) (.(....).)...((.........(.(.............)(.......(..).......)).........)..) >EU443633.1/90996-90922 CUUGACCGAGCCCAGCCACAGCGGCUGGCCCGUGGGCCGGUCCUGCCCGUACGUGGCCAGGAGCGCCUGCGCCUC .............((........................................................)..) (.(....).)...((........................................................)..) (.(....).)...((..................................(..)..................)..) (.(....).)...((......(.(................)(.......(..).......).)........)..) >AJ575648.1/7360-7286 CUUCAGCGAGCCGAGCCACAGCGGCUGGUCCGCCGGACGGCCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC ............(.(........................................................)..) (.(...)..)..(.(........................................................)..) (.(...)..)..(.(..................................(..)..................)..) (.(...)..)..(.(.....(.(..............)....(......(..)......))..........)..) >ACHP01000061.1/2873-2947 CUUGAUUGAGCCCACCCACAGCGGCUGCUCCGCUGGACGUCCCUGCCCGUAGGUGGACAGCAAUGCCUGCGCUUC ...........(.(.........................................................)..) (.(...))...(.(.........................................................)..) (.(...))...(.(...................................(..)..................)..) (.(...))...(.(......(.(..................)(......(..)......))..........)..) >ABYX01000217.1/5176-5102 CUUCACGGAGCCGAGCCACAGCGGCUGCUCCGCCGGGCGGUCCGCGCCGUACGUCGCGAGCAGGGCCUGCGCCUC .........((............................................................)..) (.(..))..((............................................................)..) (.(..))..((......................................(..)..................)..) (.(..))..((.......(.(..............)..(..........(..)........))........)..) >AM238664.2/537680-537754 CUUCAAGGACCCCAGCCACAGGGGUCGUUCCGCGUCCCGCUCCUGCCCGUAGGUGGCCAACAGCGCCUGCGCCUC .............((........................................................)..) (.(....)..)..((........................................................)..) (.(....)..)..((..................................(..)..................)..) (.(....)..)..((.....(.(.............)(...........(..)...........)).....)..) >AY310323.2/100244-100318 CUUGAUGGAGCCGAGCAGCAGCGGCCGGUCCUCGGGCCGGUCCUGCCCGUACGUCGCCAGCAGCGCCUGGGCCUC ............(.(........................................................)..) (.(....).)..(.(........................................................)..) (.(....).)..(.(..................................(..)..................)..) (.(....).)..(.(.....(.(..................)(......(..)......).).........)..) >AY330485.1/49895-49821 CUUCACCGAACCCAGCCACAGCGGGUGGCCGGCAGGACGGUUCUGCCCGUAGGUGGCCAGCAACGCGUGCGCCUC .............((........................................................)..) (.(.....).)..((........................................................)..) (.(.....).)..((..................................(..)..................)..) >AB088224.2/78764-78838 CUUCACCGACCCCAGCCACAACGGCCGACCCGGAUCACGCCCCUGCCCAUACGUCGCCAGCAGCGCCUGCGCCUC .........((............................................................)..) (.(...)).((............................................................)..) (.(...)).((......................................(..)..................)..) >DQ897668.1/47801-47727 CUUGAUCGAGCCGAGCCAGAGCGGCCGCUCCGCUGUGUGCGCCUUGCCGUAGGUCGCCAGCAGCGCCUGCGCCUC ............(.(........................................................)..) (.(....).)..(.(........................................................)..) (.(....).)..(.(..................................(..)..................)..) >AY354515.1/26777-26703 CUUCAGCGAGCCCAGCCAGAGCGGCUUGGCGGGAUCCCGGUCCCGGCCAUAGGUCGCCAGCAGUGCCUGGGCCUC .......(.(.............................................................)..) (.(..))(.(.............................................................)..) (.(..))(.(.......................................(..)..................)..) >EU827593.1/24706-24638 CUUGAGCGAGCCCAGCCACAGCGGCUGCUCGCGGUCCUGCCCGUAGGUGGCGAGCAGCGCCUGCGCCUC .......((........................................................)..) (.(..))((........................................................)..) (.(..))((..................................(..)..................)..) >AF440781.1/18383-18309 CUUCACCGACCCGAGCCACAACGGCCGCUCCGCCGAACGCCCUUGGCCGUACGUGGCGAGCAGGGCCUGCGCCUC ............(.(........................................................)..) (.(....))...(.(........................................................)..) (.(....))...(.(..................................(..)..................)..) >CP001630.1/3075151-3075083 CUUGAUCGAGCCCAGCCACAGCGGCUCGGUGCGGUCCUGACCGUAGGUGGCCAGCAGCGCCUGCGCCUC ..........((.....................................................)..) (.(...))..((.....................................................)..) (.(...))..((...............................(..)..................)..) >AB435553.1/54914-54840 CUUCAGCGAACCCAGCCACAACGGCCGGUCCGCCGACCGGGCCUGUCCGUAGGUGGCGAUCAACGCCUGCGCCUC ...........(..(........................................................)..) (.(.....)).(..(........................................................)..) (.(.....)).(..(..................................(..)..................)..) >DQ884175.1/58497-58429 CUUCACCGACCCCAGCCACAACGGCUCCUCGCGAUCCUGGCCAUAGGUGGCGAGCAAGGCCUGUGCCUC ..........((.....................................................)..) (.(...))..((.....................................................)..) (.(...))..((...............................(..)..................)..) >CT573213.2/2804363-2804289 CUUCAGCGACCCCAGCCACAGCGGGUCGGCCGCGUCCCGGUCCUGCCCGUAGGUCGCCAGGAUCGCCUGCGCCUC ..............((.......................................................)..) (.(.....)..)..((.......................................................)..) (.(.....)..)..((.................................(..)..................)..) >DQ176871.1/41145-41071 CUUCAACGAGCCCAGCCACAGCGGCCGUUCGGCAGGACGCUCCUGCCCGUAGGUGGCCUGGAGCGCCUGCACCUC ...........(..(........................................................)..) (.(...))...(..(........................................................)..) (.(...))...(..(..................................(..)..................)..) >CP000667.1/3498019-3497946 CUUGACUGAUCCGAGCCAUACCGGUUGCUCCGGCGCCCGCCCCUGCCCGUAGGUGGCCAGAAUCGCCUCGGCUU ............(.(..................................................)..)..... (.(....))...(.(..................................................)..)..... >CP000850.1/1439122-1439048 CUUGAUCGAGCCCAGCCACAGCGGCCGGUCCGGCUCGCGGCCCUGACCGUAGGUUGCCAACAGCGCCUGUGCCUC .............((........................................................)..) (.(....).)...((........................................................)..) >U78289.1/37388-37314 CUUCAGCGAGCCGAGCCACAGCGGGUGGUCGCCGGAACGGUUCCGUCCGGAGGCGGCGAGCAGCGCCCCGGCCUC ..............((.......................................................)..) (.(.....).)...((.......................................................)..) >AY899214.1/12042-11968 CUUGAUGGAACCCAGCCACAGCGGACGGCCCGCGGGCCGGUCCUGCCCGUACGUCGCCAGCAGCGCCUGCGCCUC ..............((.......................................................)..) (.(...))......((.......................................................)..) >ABYB01000295.1/8504-8430 CUUGACGGAGCCGAGCCAGAGCGGCUGUCCGGCGUCGCGUGCCGCCCCGUAGGUGGCGAGGAGGGCCUGUGCCUC ...............(..(....................................................)..) (.(.....)).....(..(....................................................)..) >ACHO01000102.1/1739-1816 CUUCACCGACCCCAACCACAAAGGUUCUCCCGGCUCCCCCCGAUCUUGCCCAUAAGUGGCCAACAACGCCUGAGCCUC .......................(.(................................................)..) >ACEV01000078.1/34422-34496 CUUGAUCGACCCGAGCCACAGCGGCUGGUCCCCGGAACGGUCCUGACCGUAGGUGGCCAGCAAUGCCUGCGCCUC ...................((..................................................)..) >CP000325.1/2633019-2633093 CUUGAUCGAACCCACCCACAACGGCCGACCCGGCUCACGAUCUUGCCCAUAAACUGCCAACAACGCCUGAGCCUC .....................((................................................)..) >ABJF01000253.1/13421-13347 UUUGAUCGAGCCGAGCAGCAGCGGCCGGUCCGCCGACCGGUCCUGGCCGUAGGUGGCCAGCAGCGCCUGCGCCUC ............(.(........................................................)..) >AM778535.1/35090-35016 CUUCAGCGAACCCAGCCAGAGCGGCCGUUGGGCCGGACGGUCCUGUCCAUAGGUGGCCAGCAGGGCCUCCGCCUC .......(.(.............................................................)..) >DQ351275.1/34835-34761 CUUCAGGGACCCCAACCACAACGGCCGAUCCGCAUCCCGGUCCUGACCGUAGGUGGCCAGCAGCGCCUGCGCCUC ................(..(...................................................)..) >CP001778.1/4412204-4412278 CUUCAGCGAGCCCAGCCACACCGGGUCCUGUUCGUCACGUCCCUGGCCAUAGGUGGCCAGCAGGGCACGGGCUUC .................((....................................................)..) >DQ450945.1/278-204 CUUGACGGAGCCGAGCCAGAGGGGUUCGUCGCCCGGCCGGUCCUGGCCGUACGUGGCCAGCAGCGCCUGCGCCUC ...................((..................................................)..) >CP000820.1/4103109-4103183 CUUCAGGCUCCCCAGCCACAGCGGCUCGCCGGCCGGCCGGCCCUGCCCGUAGGUGGCCAGCAGCGCCUGCGCCUC ..............((.......................................................)..) >ABIN01000326.1/1855-1781 UUUGAUCGACCCCAGCCACAGCGGCCGGUCCGCGGGCCGGUCCUGCCCGUAGGUGGCCAGAAGCGCUUGCGCCUC .............((........................................................)..) >AJ871581.1/19441-19515 UUUGAGCGAUCCCAGCCACAGGGGCUGGCCGGCGUCGCGGUCCCGGCCGUAGGUGGCCAGCAACGCCUCGGCCUC .............((........................................................)..)

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	((C)YU)C			< 0.001		13.9

ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC .........1.........2.........3.........4.........5.........6.........7..... 123456789012345678901234567890123456789012345678901234567890123456789012345
2	C(U(U))			< 0.001		5.49

ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC .........1.........2.........3.........4.........5.........6.........7..... 123456789012345678901234567890123456789012345678901234567890123456789012345
3	U(AN)G			< 0.001		15.4

ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC .........1.........2.........3.........4.........5.........6.........7..... 123456789012345678901234567890123456789012345678901234567890123456789012345
4	N(N(R)())			< 0.001		1.79

ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC .........1.........2.........3.........4.........5.........6.........7..... 123456789012345678901234567890123456789012345678901234567890123456789012345
5	(NCNN)			< 0.001		1.44

ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC .........1.........2.........3.........4.........5.........6.........7..... 123456789012345678901234567890123456789012345678901234567890123456789012345
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	((C)YU)C			< 0.001		13.9

ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC .........1.........2.........3.........4.........5.........6.........7..... 123456789012345678901234567890123456789012345678901234567890123456789012345
2	((G)C)C			< 0.001		10.5

ACEW01000646.1/24872-24798 CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC CUUCAGGGAGCCCAGCCACAGCGGGCGGUCCGCCGGGCGUUCCUGCCCGUACGUGGCCAGCAGUGCCUGCGCCUC .........1.........2.........3.........4.........5.........6.........7..... 123456789012345678901234567890123456789012345678901234567890123456789012345
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).