D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

mir-135 microRNA precursor family   (Rfam: RF00246)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
(UY()R)
(YU()G)
((A)UR)U
G(RU(N))
(.UNNYN.)
((N)N)A
100.0
96.2
100.0
100.0
88.5
100.0
(UY()R)
(.UNNYN.)
((N)N)A

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.6 %
(± 0.183 %)
Decision tree:

5-fold cross-validation: 87.5 %
(± 7.63 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 92.9 %
(± 4.84 %)
of AAGV020089264.1/878-968
AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
(((((((((.((((((((((((((..((..((((..((..((.......)...)))..)))).).).))))))))))))))))))))).))
.........1.........2.........3.........4.........5.........6.........7.........8.........9.
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901

abstract shape: ()

Number of sequences
Structure ORBs (out of 26) (%)
1 (UY()R)
 25 96.2
>AC018659.35/133427-133338
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..(.....................................).).......................
>AAGU03032128.1/66433-66343
CAUCUCUGCUGCGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCCAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
........................(..(....................................).)........................
>AAGW02025372.1/952-862
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUCCUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
........................(..(....................................).)........................
>CAAE01014729.1/2152458-2152549
AACCACGAUUGUGUCUUAUGGCUUUCUAUUCCUAUGUGAGUUAUUUACAGCAGGUCAUGUAGGGUUUAAAGCCAUUGGACACGCGGUGGGCA
.......................(..(.......................................).).......................
>AAPE02029537.1/1917-1828
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCCGUUGGAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..(.....................................).).......................
>AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
........................(..(....................................).)........................
>AC125204.4/96061-95972
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUCGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..(.....................................).).......................
>AB513653.1/330-419
AUUCACUGUGGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAUGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..(.....................................).).......................
>BAAF04047621.1/18500-18411
GUGCACCAUUGUGUAUUAUGGCUUUUUAUUCCUAUGUGAUGGUGAAAAAUGUUCAUGUAGGAACAGAAGCCAUUUUACACGUGGCGAUAC
.......................(..(.....................................).).......................
>AAFR03023061.1/3870-3780
GCUCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCCAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGGGAGGGGA
........................(..(....................................).)........................
>AAVX01101128.1/378-289
ACUCGCUCCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGUGACAUGAUCUCAUGUAGGGAGAGAAGCCAUGAAAUACACAGUGAGAA
.......................(..(.....................................).).......................
>AANH01002554.1/13894-13804
AGCCACAUUUGUGUCUUAUGGCUUUCUAUUCCUAUGUGAGUUGGUUUGGCAUGUCAUGUAGGGUCUAAAGCCAUUAGAUACUCAGUGGACA
.......................(..(......................................).).......................
>AC098936.2/102185-102095
CCACUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUCCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
........................(..(....................................).)........................
>BX855597.6/51414-51323
AAACACUACUGUGCUUUAUGGCUUUCUAUUCCUAUGUGAUUUUGAUAUGAUGUAUCAUGUAGGGUUCAAAGCCAUUAGGUACAGAGUGGCUU
.......................(..(.......................................).).......................
>AAIY01255743.1/1211-1301
CGGCUCCGCUGCGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGAUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
........................(..(....................................).)........................
>AAPN01269426.1/3344-3254
GCUCUCUGCUGUGGCCUAUGGCUUUUUAUUCCUAUGUGAUUGCUGCUUUGAACUCAUGUAGGGCUGAAAGCCAUGGGCUACAGAGAGGGGA
........................(..(....................................).)........................
>AAWZ02020739.1/53045-52955
GCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCAUAACUCAUGUAGGGCUAAAAGCCAUGGGCUACACAGAGGAAU
........................(..(....................................).)........................
>BC025935.1/2921-2832
AGGCCUCACUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUAUUGCUCGCUCAUAUAGGGAUUGGAGCCGUGGCGUACGGUGAGGAUA
.......................(..(.....................................).).......................
>AAPY01288096.1/117-27
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGACCCAA
........................(..(....................................).)........................
>AY865877.1/420-509
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACG
.......................(..(.....................................).).......................
>AY865882.1/491-580
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGCACCACAUAAUGUAAA
.......................(..(.....................................).).......................
>AC094021.2/73294-73205
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACA
.......................(..(.....................................).).......................
>CAAB02007023.1/26915-27005
ACUCGCUGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUUCUCUAGCAUGUCACAUAGGGUCUAAAGCCAUUGGGUACAGAGUGGGAG
.......................(..(......................................).).......................
>ADDD01008157.1/1751-1661
GCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCCUAACUCAUGUAGGGCGAAAAGCCAUGGGCUACUCAGGGGAGG
........................(..(....................................).)........................
>AAEX03018256.1/46864-46774
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUUCUAAUUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
........................(..(....................................).)........................
2 (UY()R)
(YU()G)
 20 76.9
>AAEX03018256.1/46864-46774
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUUCUAAUUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..............................).).).).......................
>AAPY01288096.1/117-27
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGACCCAA
.......................(..((..(..............................).).).).......................
>CAAB02007023.1/26915-27005
ACUCGCUGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUUCUCUAGCAUGUCACAUAGGGUCUAAAGCCAUUGGGUACAGAGUGGGAG
.......................(..((..(..............................).).).).......................
>BX855597.6/51414-51323
AAACACUACUGUGCUUUAUGGCUUUCUAUUCCUAUGUGAUUUUGAUAUGAUGUAUCAUGUAGGGUUCAAAGCCAUUAGGUACAGAGUGGCUU
.......................(..((..(...............................).).).).......................
>AANH01002554.1/13894-13804
AGCCACAUUUGUGUCUUAUGGCUUUCUAUUCCUAUGUGAGUUGGUUUGGCAUGUCAUGUAGGGUCUAAAGCCAUUAGAUACUCAGUGGACA
.......................(..((..(..............................).).).).......................
>AY865877.1/420-509
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACG
......................(..(.(..(.............................).)..).)......................
>AC094021.2/73294-73205
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACA
......................(..(.(..(.............................).)..).)......................
>BAAF04047621.1/18500-18411
GUGCACCAUUGUGUAUUAUGGCUUUUUAUUCCUAUGUGAUGGUGAAAAAUGUUCAUGUAGGAACAGAAGCCAUUUUACACGUGGCGAUAC
.......(..(............(..(.....................................).)............).)........
>AAIY01255743.1/1211-1301
CGGCUCCGCUGCGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGAUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..............................).).).).......................
>AAPE02029537.1/1917-1828
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCCGUUGGAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(.............................).).).).......................
>CAAE01014729.1/2152458-2152549
AACCACGAUUGUGUCUUAUGGCUUUCUAUUCCUAUGUGAGUUAUUUACAGCAGGUCAUGUAGGGUUUAAAGCCAUUGGACACGCGGUGGGCA
.......................(..((..(...............................).).).).......................
>AC018659.35/133427-133338
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(.............................).).).).......................
>BC025935.1/2921-2832
AGGCCUCACUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUAUUGCUCGCUCAUAUAGGGAUUGGAGCCGUGGCGUACGGUGAGGAUA
......................(..(.(..(.............................).)..).)......................
>AAFR03023061.1/3870-3780
GCUCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCCAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGGGAGGGGA
.......................(..((..(..............................).).).).......................
>AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(..............................).).).).......................
>AC125204.4/96061-95972
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUCGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(.............................).).).).......................
>AAVX01101128.1/378-289
ACUCGCUCCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGUGACAUGAUCUCAUGUAGGGAGAGAAGCCAUGAAAUACACAGUGAGAA
.......................(..((..(.............................).).).).......................
>AAPN01269426.1/3344-3254
GCUCUCUGCUGUGGCCUAUGGCUUUUUAUUCCUAUGUGAUUGCUGCUUUGAACUCAUGUAGGGCUGAAAGCCAUGGGCUACAGAGAGGGGA
.......................(..((..(..............................).).).).......................
>AAGW02025372.1/952-862
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUCCUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..............................).).).).......................
>AAWZ02020739.1/53045-52955
GCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCAUAACUCAUGUAGGGCUAAAAGCCAUGGGCUACACAGAGGAAU
......................(..(.(..(..............................).)..).)......................
3 (UY()R)
(YU()G)
((A)UR)U
 18 69.2
>AC125204.4/96061-95972
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUCGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(..((...................)..)..).).).).......................
>AY865877.1/420-509
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACG
......................(..(.(..(..((...................)..)..).)..).)......................
>AAEX03018256.1/46864-46774
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUUCUAAUUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..(..................)..)..).).).).......................
>AAFR03023061.1/3870-3780
GCUCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCCAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGGGAGGGGA
.......................(..((..(..(..(..................)..)..).).).).......................
>AAWZ02020739.1/53045-52955
GCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCAUAACUCAUGUAGGGCUAAAAGCCAUGGGCUACACAGAGGAAU
......................(..(.(..(..(..(..................)..)..).)..).)......................
>CAAE01014729.1/2152458-2152549
AACCACGAUUGUGUCUUAUGGCUUUCUAUUCCUAUGUGAGUUAUUUACAGCAGGUCAUGUAGGGUUUAAAGCCAUUGGACACGCGGUGGGCA
.......................(..((..(..(..(...................)..)..).).).).......................
>AAVX01101128.1/378-289
ACUCGCUCCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGUGACAUGAUCUCAUGUAGGGAGAGAAGCCAUGAAAUACACAGUGAGAA
.......................(..((..(..((...................)..)..).).).).......................
>BX855597.6/51414-51323
AAACACUACUGUGCUUUAUGGCUUUCUAUUCCUAUGUGAUUUUGAUAUGAUGUAUCAUGUAGGGUUCAAAGCCAUUAGGUACAGAGUGGCUU
.......................(..((..(..(..(...................)..)..).).).).......................
>BC025935.1/2921-2832
AGGCCUCACUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUAUUGCUCGCUCAUAUAGGGAUUGGAGCCGUGGCGUACGGUGAGGAUA
......................(..(.(..(..(..(.................)..)..).)..).)......................
>AAIY01255743.1/1211-1301
CGGCUCCGCUGCGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGAUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..(..................)..)..).).).).......................
>AAPE02029537.1/1917-1828
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCCGUUGGAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..(.................)..)..).).).).......................
>AC094021.2/73294-73205
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACA
......................(..(.(..(..((...................)..)..).)..).)......................
>AANH01002554.1/13894-13804
AGCCACAUUUGUGUCUUAUGGCUUUCUAUUCCUAUGUGAGUUGGUUUGGCAUGUCAUGUAGGGUCUAAAGCCAUUAGAUACUCAGUGGACA
.......................(..((..(..(..(..................)..)..).).).).......................
>AAPN01269426.1/3344-3254
GCUCUCUGCUGUGGCCUAUGGCUUUUUAUUCCUAUGUGAUUGCUGCUUUGAACUCAUGUAGGGCUGAAAGCCAUGGGCUACAGAGAGGGGA
.......................(..((..(..(..(..................)..)..).).).).......................
>AAPY01288096.1/117-27
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGACCCAA
.......................(..((..(..(..(..................)..)..).).).).......................
>AC018659.35/133427-133338
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(..((...................)..)..).).).).......................
>AAGW02025372.1/952-862
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUCCUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..(..................)..)..).).).).......................
>AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(..(..(..................)..)..).).).).......................
4 (UY()R)
(YU()G)
((A)UR)U
G(RU(N))
 16 61.5
>BX855597.6/51414-51323
AAACACUACUGUGCUUUAUGGCUUUCUAUUCCUAUGUGAUUUUGAUAUGAUGUAUCAUGUAGGGUUCAAAGCCAUUAGGUACAGAGUGGCUU
.......................(..((..(..(..((..(.............)))..)..).).).).......................
>AAPY01288096.1/117-27
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGACCCAA
.......................(..((..(..(..((..(............)))..)..).).).).......................
>AAPN01269426.1/3344-3254
GCUCUCUGCUGUGGCCUAUGGCUUUUUAUUCCUAUGUGAUUGCUGCUUUGAACUCAUGUAGGGCUGAAAGCCAUGGGCUACAGAGAGGGGA
.......................(..((..(..(..((..(............)))..)..).).).).......................
>AAGW02025372.1/952-862
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUCCUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..((..(............)))..)..).).).).......................
>AAFR03023061.1/3870-3780
GCUCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCCAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGGGAGGGGA
.......................(..((..(..(..((..(............)))..)..).).).).......................
>AC018659.35/133427-133338
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(..((..(..(...........)))..)..).).).).......................
>BC025935.1/2921-2832
AGGCCUCACUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUAUUGCUCGCUCAUAUAGGGAUUGGAGCCGUGGCGUACGGUGAGGAUA
......................(..(.(..(..(..((..(...........)))..)..).)..).)......................
>AC094021.2/73294-73205
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACA
......................(..(.(..(..((..(..(...........)))..)..).)..).)......................
>AC125204.4/96061-95972
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUCGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(..((..(..(...........)))..)..).).).).......................
>AAVX01101128.1/378-289
ACUCGCUCCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGUGACAUGAUCUCAUGUAGGGAGAGAAGCCAUGAAAUACACAGUGAGAA
.......................(..((..(..((..(..(...........)))..)..).).).).......................
>AY865877.1/420-509
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACG
......................(..(.(..(..((..(..(...........)))..)..).)..).)......................
>AAIY01255743.1/1211-1301
CGGCUCCGCUGCGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGAUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..((..(............)))..)..).).).).......................
>AAPE02029537.1/1917-1828
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCCGUUGGAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..((..(...........)))..)..).).).).......................
>AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(..(..((..(............)))..)..).).).).......................
>AAWZ02020739.1/53045-52955
GCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCAUAACUCAUGUAGGGCUAAAAGCCAUGGGCUACACAGAGGAAU
......................(..(.(..(..(..((..(............)))..)..).)..).)......................
>AAEX03018256.1/46864-46774
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUUCUAAUUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..((..(............)))..)..).).).).......................
5 (UY()R)
(YU()G)
((A)UR)U
G(RU(N))
(.UNNYN.)
 15 57.7
>AAPY01288096.1/117-27
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGACCCAA
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
>AC094021.2/73294-73205
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACA
......................(..(.(..(..((..(..((......)...)))..)..).)..).)......................
>AC125204.4/96061-95972
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUCGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(..((..(..((......)...)))..)..).).).).......................
>AC018659.35/133427-133338
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(..((..(..((......)...)))..)..).).).).......................
>AAPN01269426.1/3344-3254
GCUCUCUGCUGUGGCCUAUGGCUUUUUAUUCCUAUGUGAUUGCUGCUUUGAACUCAUGUAGGGCUGAAAGCCAUGGGCUACAGAGAGGGGA
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
>BC025935.1/2921-2832
AGGCCUCACUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUAUUGCUCGCUCAUAUAGGGAUUGGAGCCGUGGCGUACGGUGAGGAUA
......................(..(.(..(..(..((..((......)...)))..)..).)..).)......................
>AY865877.1/420-509
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACG
......................(..(.(..(..((..(..((......)...)))..)..).)..).)......................
>AAGW02025372.1/952-862
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUCCUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
>BX855597.6/51414-51323
AAACACUACUGUGCUUUAUGGCUUUCUAUUCCUAUGUGAUUUUGAUAUGAUGUAUCAUGUAGGGUUCAAAGCCAUUAGGUACAGAGUGGCUU
.......................(..((..(..(..((..((........)...)))..)..).).).).......................
>AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..((..(..(..((..((.......)...)))..)..).).).).......................
>AAIY01255743.1/1211-1301
CGGCUCCGCUGCGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGAUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
>AAVX01101128.1/378-289
ACUCGCUCCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGUGACAUGAUCUCAUGUAGGGAGAGAAGCCAUGAAAUACACAGUGAGAA
.......................(..((..(..((..(..((......)...)))..)..).).).).......................
>AAFR03023061.1/3870-3780
GCUCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCCAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGGGAGGGGA
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
>AAWZ02020739.1/53045-52955
GCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCAUAACUCAUGUAGGGCUAAAAGCCAUGGGCUACACAGAGGAAU
......................(..(.(..(..(..((..(.(......)...)))..)..).)..).)......................
>AAEX03018256.1/46864-46774
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUUCUAAUUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
6 (UY()R)
(YU()G)
((A)UR)U
G(RU(N))
(.UNNYN.)
((N)N)A
 11 42.3
>AAPY01288096.1/117-27
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGACCCAA
.((....................(..((..(..(..((..(.(......)...)))..)..).).).)...................).).
>AAFR03023061.1/3870-3780
GCUCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCCAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGGGAGGGGA
(.(....................(..((..(..(..((..(.(......)...)))..)..).).).)....................).)
>AC018659.35/133427-133338
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.((....................(..((..(..((..(..((......)...)))..)..).).).)...................).).
>BC025935.1/2921-2832
AGGCCUCACUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUAUUGCUCGCUCAUAUAGGGAUUGGAGCCGUGGCGUACGGUGAGGAUA
((....................(..(.(..(..(..((..((......)...)))..)..).)..).)...................).)
>AAVX01101128.1/378-289
ACUCGCUCCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGUGACAUGAUCUCAUGUAGGGAGAGAAGCCAUGAAAUACACAGUGAGAA
(.(....................(..((..(..((..(..((......)...)))..)..).).).)...................).).
>AC125204.4/96061-95972
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUCGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.((....................(..((..(..((..(..((......)...)))..)..).).).)...................).).
>AY865877.1/420-509
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACG
..(.(.................(..(.(..(..((..(..((......)...)))..)..).)..).).................).)..
>AAWZ02020739.1/53045-52955
GCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCAUAACUCAUGUAGGGCUAAAAGCCAUGGGCUACACAGAGGAAU
((....................(..(.(..(..(..((..(.(......)...)))..)..).)..).)..................).).
>AC094021.2/73294-73205
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACA
(.(...................(..(.(..(..((..(..((......)...)))..)..).)..).)...................).)
>AAPN01269426.1/3344-3254
GCUCUCUGCUGUGGCCUAUGGCUUUUUAUUCCUAUGUGAUUGCUGCUUUGAACUCAUGUAGGGCUGAAAGCCAUGGGCUACAGAGAGGGGA
(.(....................(..((..(..(..((..(.(......)...)))..)..).).).)....................).)
>AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.((....................(..((..(..(..((..((.......)...)))..)..).).).)...................).).

>AC018659.35/133427-133338
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..(.....................................).).......................
.......................(..((..(.............................).).).).......................
.......................(..((..(..((...................)..)..).).).).......................
.......................(..((..(..((..(..(...........)))..)..).).).).......................
.......................(..((..(..((..(..((......)...)))..)..).).).).......................
.((....................(..((..(..((..(..((......)...)))..)..).).).)...................).).
>AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
........................(..(....................................).)........................
.......................(..((..(..............................).).).).......................
.......................(..((..(..(..(..................)..)..).).).).......................
.......................(..((..(..(..((..(............)))..)..).).).).......................
.......................(..((..(..(..((..((.......)...)))..)..).).).).......................
.((....................(..((..(..(..((..((.......)...)))..)..).).).)...................).).
>AC125204.4/96061-95972
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUCGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..(.....................................).).......................
.......................(..((..(.............................).).).).......................
.......................(..((..(..((...................)..)..).).).).......................
.......................(..((..(..((..(..(...........)))..)..).).).).......................
.......................(..((..(..((..(..((......)...)))..)..).).).).......................
.((....................(..((..(..((..(..((......)...)))..)..).).).)...................).).
>AAFR03023061.1/3870-3780
GCUCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCCAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGGGAGGGGA
........................(..(....................................).)........................
.......................(..((..(..............................).).).).......................
.......................(..((..(..(..(..................)..)..).).).).......................
.......................(..((..(..(..((..(............)))..)..).).).).......................
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
(.(....................(..((..(..(..((..(.(......)...)))..)..).).).)....................).)
>AAVX01101128.1/378-289
ACUCGCUCCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGUGACAUGAUCUCAUGUAGGGAGAGAAGCCAUGAAAUACACAGUGAGAA
.......................(..(.....................................).).......................
.......................(..((..(.............................).).).).......................
.......................(..((..(..((...................)..)..).).).).......................
.......................(..((..(..((..(..(...........)))..)..).).).).......................
.......................(..((..(..((..(..((......)...)))..)..).).).).......................
(.(....................(..((..(..((..(..((......)...)))..)..).).).)...................).).
>AAPN01269426.1/3344-3254
GCUCUCUGCUGUGGCCUAUGGCUUUUUAUUCCUAUGUGAUUGCUGCUUUGAACUCAUGUAGGGCUGAAAGCCAUGGGCUACAGAGAGGGGA
........................(..(....................................).)........................
.......................(..((..(..............................).).).).......................
.......................(..((..(..(..(..................)..)..).).).).......................
.......................(..((..(..(..((..(............)))..)..).).).).......................
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
(.(....................(..((..(..(..((..(.(......)...)))..)..).).).)....................).)
>AAWZ02020739.1/53045-52955
GCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCAUAACUCAUGUAGGGCUAAAAGCCAUGGGCUACACAGAGGAAU
........................(..(....................................).)........................
......................(..(.(..(..............................).)..).)......................
......................(..(.(..(..(..(..................)..)..).)..).)......................
......................(..(.(..(..(..((..(............)))..)..).)..).)......................
......................(..(.(..(..(..((..(.(......)...)))..)..).)..).)......................
((....................(..(.(..(..(..((..(.(......)...)))..)..).)..).)..................).).
>BC025935.1/2921-2832
AGGCCUCACUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUAUUGCUCGCUCAUAUAGGGAUUGGAGCCGUGGCGUACGGUGAGGAUA
.......................(..(.....................................).).......................
......................(..(.(..(.............................).)..).)......................
......................(..(.(..(..(..(.................)..)..).)..).)......................
......................(..(.(..(..(..((..(...........)))..)..).)..).)......................
......................(..(.(..(..(..((..((......)...)))..)..).)..).)......................
((....................(..(.(..(..(..((..((......)...)))..)..).)..).)...................).)
>AAPY01288096.1/117-27
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGACCCAA
........................(..(....................................).)........................
.......................(..((..(..............................).).).).......................
.......................(..((..(..(..(..................)..)..).).).).......................
.......................(..((..(..(..((..(............)))..)..).).).).......................
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
.((....................(..((..(..(..((..(.(......)...)))..)..).).).)...................).).
>AY865877.1/420-509
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACG
.......................(..(.....................................).).......................
......................(..(.(..(.............................).)..).)......................
......................(..(.(..(..((...................)..)..).)..).)......................
......................(..(.(..(..((..(..(...........)))..)..).)..).)......................
......................(..(.(..(..((..(..((......)...)))..)..).)..).)......................
..(.(.................(..(.(..(..((..(..((......)...)))..)..).)..).).................).)..
>AC094021.2/73294-73205
AGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACA
.......................(..(.....................................).).......................
......................(..(.(..(.............................).)..).)......................
......................(..(.(..(..((...................)..)..).)..).)......................
......................(..(.(..(..((..(..(...........)))..)..).)..).)......................
......................(..(.(..(..((..(..((......)...)))..)..).)..).)......................
(.(...................(..(.(..(..((..(..((......)...)))..)..).)..).)...................).)
>AAGW02025372.1/952-862
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUCCUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
........................(..(....................................).)........................
.......................(..((..(..............................).).).).......................
.......................(..((..(..(..(..................)..)..).).).).......................
.......................(..((..(..(..((..(............)))..)..).).).).......................
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
>BX855597.6/51414-51323
AAACACUACUGUGCUUUAUGGCUUUCUAUUCCUAUGUGAUUUUGAUAUGAUGUAUCAUGUAGGGUUCAAAGCCAUUAGGUACAGAGUGGCUU
.......................(..(.......................................).).......................
.......................(..((..(...............................).).).).......................
.......................(..((..(..(..(...................)..)..).).).).......................
.......................(..((..(..(..((..(.............)))..)..).).).).......................
.......................(..((..(..(..((..((........)...)))..)..).).).).......................
>AAIY01255743.1/1211-1301
CGGCUCCGCUGCGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGAUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
........................(..(....................................).)........................
.......................(..((..(..............................).).).).......................
.......................(..((..(..(..(..................)..)..).).).).......................
.......................(..((..(..(..((..(............)))..)..).).).).......................
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
>AAEX03018256.1/46864-46774
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUUCUAAUUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
........................(..(....................................).)........................
.......................(..((..(..............................).).).).......................
.......................(..((..(..(..(..................)..)..).).).).......................
.......................(..((..(..(..((..(............)))..)..).).).).......................
.......................(..((..(..(..((..(.(......)...)))..)..).).).).......................
>AAPE02029537.1/1917-1828
CAGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCCGUUGGAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
.......................(..(.....................................).).......................
.......................(..((..(.............................).).).).......................
.......................(..((..(..(..(.................)..)..).).).).......................
.......................(..((..(..(..((..(...........)))..)..).).).).......................
>CAAE01014729.1/2152458-2152549
AACCACGAUUGUGUCUUAUGGCUUUCUAUUCCUAUGUGAGUUAUUUACAGCAGGUCAUGUAGGGUUUAAAGCCAUUGGACACGCGGUGGGCA
.......................(..(.......................................).).......................
.......................(..((..(...............................).).).).......................
.......................(..((..(..(..(...................)..)..).).).).......................
>AANH01002554.1/13894-13804
AGCCACAUUUGUGUCUUAUGGCUUUCUAUUCCUAUGUGAGUUGGUUUGGCAUGUCAUGUAGGGUCUAAAGCCAUUAGAUACUCAGUGGACA
.......................(..(......................................).).......................
.......................(..((..(..............................).).).).......................
.......................(..((..(..(..(..................)..)..).).).).......................
>BAAF04047621.1/18500-18411
GUGCACCAUUGUGUAUUAUGGCUUUUUAUUCCUAUGUGAUGGUGAAAAAUGUUCAUGUAGGAACAGAAGCCAUUUUACACGUGGCGAUAC
.......................(..(.....................................).).......................
.......(..(............(..(.....................................).)............).)........
>CAAB02007023.1/26915-27005
ACUCGCUGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUUCUCUAGCAUGUCACAUAGGGUCUAAAGCCAUUGGGUACAGAGUGGGAG
.......................(..(......................................).).......................
.......................(..((..(..............................).).).).......................
>AAGU03032128.1/66433-66343
CAUCUCUGCUGCGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCCAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
........................(..(....................................).)........................
>AB513653.1/330-419
AUUCACUGUGGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAUGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.......................(..(.....................................).).......................
>AC098936.2/102185-102095
CCACUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUCCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGC
........................(..(....................................).)........................
>AY865882.1/491-580
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGCACCACAUAAUGUAAA
.......................(..(.....................................).).......................
>ADDD01008157.1/1751-1661
GCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCCUAACUCAUGUAGGGCGAAAAGCCAUGGGCUACUCAGGGGAGG
........................(..(....................................).)........................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 (UY()R) < 0.001 10.7
AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.........1.........2.........3.........4.........5.........6.........7.........8.........9.
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2 (YU()G) < 0.001 41
AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.........1.........2.........3.........4.........5.........6.........7.........8.........9.
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3 ((A)UR)U < 0.001 13.7
AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.........1.........2.........3.........4.........5.........6.........7.........8.........9.
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4 G(RU(N)) < 0.001 6.63
AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.........1.........2.........3.........4.........5.........6.........7.........8.........9.
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5 (.UNNYN.) < 0.001 3.86
AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.........1.........2.........3.........4.........5.........6.........7.........8.........9.
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6 ((N)N)A < 0.001 1.26
AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.........1.........2.........3.........4.........5.........6.........7.........8.........9.
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ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 (UY()R) < 0.001 10.7
AAGV020089264.1/878-968
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
AUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAA
.........1.........2.........3.........4.........5.........6.........7.........8.........9.
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NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).