D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

SAM/SAH riboswitch (Rfam: RF01727)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

C(UN)C
((A)GC)A
(AA()RN)
((C)U)G
((G)G)A

100.0
97.8
100.0
100.0
100.0

C(UN)C
((A)GC)A
(AA()RN)
((G)G)A

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 99.9 %
(± 0.0557 %)

Decision tree:

5-fold cross-validation: 96.5 %
(± 2.47 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 97.6 %
(± 2.62 %)

of AAFY01026626.1/203-251

AAFY01026626.1/203-251

GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA
(.((((((((..((.(..)).)..)))))))))(..(((..).).)..)
.........1.........2.........3.........4.........
1234567890123456789012345678901234567890123456789

abstract shape: `()()`

					Number of sequences
	Structure	ORBs			(out of 46)	(%)
1		C(UN)C			46	100.0
>AACY023829178.1/189-238 GCGCUGCCACAACGGCUUCCUGGCGUGGCGGUCUGACAGUCAAUGGAGCA ...............(..)............................... >AACY021643013.1/428-383 UGGCACGCAACGGCUUCCUGACGCGUGAGAUUGAAUUAUUGGAGCA .............(..)............................. >AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA ...............(..).............................. >ABCR01000003.1/393478-393430 AACCCGUCACAACGGCUUCCUGGCGUGACGGCUGACAUACAAUGGAGCA ...............(..).............................. >AACY020145469.1/1022-977 UGGCACGCAACGGCUUCCUGACGCGUGAGAUAAAAUUAUUGGAGCA .............(..)............................. >ABIE01000005.1/70619-70571 UUACUGCCACAACGGCUUCCUGGCGUGGCAGGCUAAACCCAACGGAGCA ...............(..).............................. >CP000377.1/211359-211407 AUGCCGCCACAACGGCUUCCUGGCGUGGCGGAUCUCAUCCAAUGGAGCA ...............(..).............................. >ABSH01000031.1/84911-84863 ACUCGUCCGCAACGGCUUCCUGACGCGGAUCGACAUUUAAACUGGAGCA ...............(..).............................. >AACY020255086.1/785-738 UAUUGCACGCAACGGCUUCCUGACGCGUGAGUUUUAAUUAUCGGAGCA ...............(..)............................. >ABID01000011.1/17084-17036 AGAGCAUCACAACGGCUUCCUGACGUGGUGCGUAAUUUUUAUUGGAGCA ...............(..).............................. >AATR01000003.1/91067-91114 UAAGGCUUACAACGGCUACCUGAAGUAAGUUGACAUAAAAACGGAGCA ...............(..)............................. >CP000362.1/3781791-3781742 AGCGAACCACAACGGCUUCCUGACGUGGUUCUUCAUUGGCGAUUGGAGCG ...............(..)............................... >AACY022514310.1/232-279 AAUGUUCUACAACGGCUUCCUGACGUAGGGCAAUUCUUUUUUGGAGCA ...............(..)............................. >ABXF01000008.1/119484-119533 UACCUGCCACAACGGCUUCCUGGCGUGGCGGGCUGAACCUCAAUGGAGCA ...............(..)............................... >AACY021083615.1/454-500 CCGUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA ...............(..)............................ >AACY020533904.1/2663-2615 GCGACCCCACAACGGCUUCCUGGCGUGGGGACACACACAUAAUGGAGCA ...............(..).............................. >AAFZ01022139.1/317-268 AUGCCGCCCCAACGGCUUCCUGACGGGGCGGAUUCACUUUAAAUGGAGCA ...............(..)............................... >AATQ01000051.1/20133-20085 UCCCCGUCACAACGGCUUCCUGGCGUGACGGCUGGUACCCAAUGGAGCA ...............(..).............................. >AAXZ01000012.1/36217-36265 UGUCCCCCUCAACGGCUUCCUGACGAGGCGGGCUUAACAAAACGGAGCA ...............(..).............................. >AACY022370156.1/216-170 UCCUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA ...............(..)............................ >CP000489.1/1874599-1874647 UGACCGCCACAACGGCUUCCUGGCGUGGCGGCGUCAUUUCAACGGAGCA ...............(..).............................. >ABXM01000011.1/241752-241702 UUACUGCCACAACGGCUUCCUGGCGUGGCAGGCUGAACCCCCAACGGAGCA ...............(..)................................ >AACY022603193.1/622-575 UGAAACUUAUAACGGCUACCUGAAGUAAGUUUUUUUAUAAACGGAGCA ...............(..)............................. >AACY020589009.1/251-203 ACGUCGUCACAACGGCUUCCUGGCGUGACGAUACACAUCUAAUGGAGCA ...............(..).............................. >AACY020525991.1/1534-1483 CCGCUGUCACAACGGCUUCCUGGCGUGGCGGCUAAACCAUUUUAUCGGAGCA ...............(..)................................. >ABXS01000051.1/24818-24865 AAUCUGCCACAACGGCUUCCUGACGUGGCUAUUUAAUCUAUUGGAGCA ...............(..)............................. >AACY022220959.1/246-198 GUGCUGUCACAACGGCUUCCUGGCGUGGCGGCGAAAACCUAAUGGAGCA ...............(..).............................. >AACY020081998.1/989-1034 AGACACGCAACGGCUUCCUGACGCGUGAAAUUAAAUUAUUGGAGCA .............(..)............................. >AACY023873338.1/90-135 UAGCACGCAACGGCUUCCUGACGCGUGAGCUUUAAUUAUCGGAGCA .............(..)............................. >ABSK01000009.1/52599-52551 UUUUAUCCACAACGGCUUCCUGAAGUGGAUCGACAUUUAAACUGGAGCA ...............(..).............................. >CP000578.1/343169-343120 CAACCGUCACAACGGCUUCCUGGCGUGACGGGGUUAACCCCAACGGAGCA ...............(..)............................... >CP000032.1/9372-9422 GACCUGCCACAACGGCUUCCUGGCGUGGCGAGGGAAACCUUCAAUGGAGCA ...............(..)................................ >AACY020253271.1/246-293 AAUUGCACGCAACGGCUUCCUGACGCGUGAGUUUUAAUUAUCGGAGCA ...............(..)............................. >CP000264.1/678143-678190 ACUCCUCCACAACGGCUUCCUGACGUGGGGGAUUAUUUGAAUGGAGCA ...............(..)............................. >AACY020245805.1/1080-1127 UCCUACACGCAACGGCUUCCUGACGCGUGAGGUGUAAUCAUUGGAGCA ...............(..)............................. >AACY021789724.1/224-271 UGAUGCACGCAACGGCUUCCUGACGCGUGAGAUUAAAUUAUUGGAGCA ...............(..)............................. >AACY020526688.1/2154-2202 CUCCUGUCACAACGGCUUCCUGGCGUGGCGGGCAACAUCCAAUGGAGCA ...............(..).............................. >ABXE01000008.1/209807-209759 AGACUGCCACAACGGCUUCCUGACGUGGUGGAAAAAUCUUACUGGAGCA ...............(..).............................. >CP000830.1/1046963-1046915 CCGACGCUGCAACGGCUUCCUGGCGCAGCGGUCGCUAUUCAAUGGAGCA ...............(..).............................. >AACY022262901.1/198-151 ACAUGUACGCAACGGCUUCCUGGCGCGUGAACCGUAAUUAUUGGAGCA ...............(..)............................. >AAYC01000001.1/142050-142098 UACCUGUCACAACGGCUUCCUGGCGUGACGAGGUGACCUCAGUGGAGCA ...............(..).............................. >AACY023759949.1/393-346 UAUUGCACGCAACGGCUUCCUGACGCGUGAGUUGUAAUUAUCGGAGCA ...............(..)............................. >AAYB01000002.1/503668-503715 AUUCUGUCACAACGGCUUCCUGACGUGGCAGAGAUUUUUAAUGGAGCA ...............(..)............................. >AAYA01000008.1/121966-121918 ACCCCGUCACAACGGCUUCCUGGCGUGACGGAGAAACCCGAAUGGAGCA ...............(..).............................. >CP000662.1/776419-776468 CAACCGUCACAACGGCUUCCUGGCGUGGCGGGGAUAACCCCAACGGAGCA ...............(..)............................... >AACY020522644.1/2673-2625 AUCUCGCCACAACGGCUUCCUGACGUGGCGGCAGAACCCUAAUGGAGCA ...............(..)..............................
2		C(UN)C ((A)GC)A			40	87.0
>CP000830.1/1046963-1046915 CCGACGCUGCAACGGCUUCCUGGCGCAGCGGUCGCUAUUCAAUGGAGCA ...............(..)...............(..(.......)..) >AATR01000003.1/91067-91114 UAAGGCUUACAACGGCUACCUGAAGUAAGUUGACAUAAAAACGGAGCA ...............(..)...............((........)..) >ABIE01000005.1/70619-70571 UUACUGCCACAACGGCUUCCUGGCGUGGCAGGCUAAACCCAACGGAGCA ...............(..)...............(.(........)..) >AACY023873338.1/90-135 UAGCACGCAACGGCUUCCUGACGCGUGAGCUUUAAUUAUCGGAGCA .............(..)...............(.(.......)..) >CP000377.1/211359-211407 AUGCCGCCACAACGGCUUCCUGGCGUGGCGGAUCUCAUCCAAUGGAGCA ...............(..)...............(.(........)..) >AACY022220959.1/246-198 GUGCUGUCACAACGGCUUCCUGGCGUGGCGGCGAAAACCUAAUGGAGCA ...............(..)...............(.(........)..) >AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA ...............(..)...............((.........)..) >ABXF01000008.1/119484-119533 UACCUGCCACAACGGCUUCCUGGCGUGGCGGGCUGAACCUCAAUGGAGCA ...............(..)...............(.(.........)..) >AACY020081998.1/989-1034 AGACACGCAACGGCUUCCUGACGCGUGAAAUUAAAUUAUUGGAGCA .............(..)...............(.(.......)..) >AACY021643013.1/428-383 UGGCACGCAACGGCUUCCUGACGCGUGAGAUUGAAUUAUUGGAGCA .............(..)...............(.(.......)..) >AACY022603193.1/622-575 UGAAACUUAUAACGGCUACCUGAAGUAAGUUUUUUUAUAAACGGAGCA ...............(..)...............((........)..) >AACY020255086.1/785-738 UAUUGCACGCAACGGCUUCCUGACGCGUGAGUUUUAAUUAUCGGAGCA ...............(..)...............(.(.......)..) >AATQ01000051.1/20133-20085 UCCCCGUCACAACGGCUUCCUGGCGUGACGGCUGGUACCCAAUGGAGCA ...............(..)...............(.(........)..) >AACY020145469.1/1022-977 UGGCACGCAACGGCUUCCUGACGCGUGAGAUAAAAUUAUUGGAGCA .............(..)...............(.(.......)..) >AACY020589009.1/251-203 ACGUCGUCACAACGGCUUCCUGGCGUGACGAUACACAUCUAAUGGAGCA ...............(..)...............(.(........)..) >AACY022370156.1/216-170 UCCUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA ...............(..)...............((.......)..) >AAXZ01000012.1/36217-36265 UGUCCCCCUCAACGGCUUCCUGACGAGGCGGGCUUAACAAAACGGAGCA ...............(..)...............(.(........)..) >AACY023759949.1/393-346 UAUUGCACGCAACGGCUUCCUGACGCGUGAGUUGUAAUUAUCGGAGCA ...............(..)...............(.(.......)..) >AACY020245805.1/1080-1127 UCCUACACGCAACGGCUUCCUGACGCGUGAGGUGUAAUCAUUGGAGCA ...............(..)...............((........)..) >CP000264.1/678143-678190 ACUCCUCCACAACGGCUUCCUGACGUGGGGGAUUAUUUGAAUGGAGCA ...............(..)...............((........)..) >AAYB01000002.1/503668-503715 AUUCUGUCACAACGGCUUCCUGACGUGGCAGAGAUUUUUAAUGGAGCA ...............(..)...............((........)..) >CP000489.1/1874599-1874647 UGACCGCCACAACGGCUUCCUGGCGUGGCGGCGUCAUUUCAACGGAGCA ...............(..)...............(..(.......)..) >AACY022262901.1/198-151 ACAUGUACGCAACGGCUUCCUGGCGCGUGAACCGUAAUUAUUGGAGCA ...............(..)...............(.(.......)..) >AAFZ01022139.1/317-268 AUGCCGCCCCAACGGCUUCCUGACGGGGCGGAUUCACUUUAAAUGGAGCA ...............(..)...............(..(........)..) >ABSK01000009.1/52599-52551 UUUUAUCCACAACGGCUUCCUGAAGUGGAUCGACAUUUAAACUGGAGCA ...............(..)...............(.(........)..) >CP000662.1/776419-776468 CAACCGUCACAACGGCUUCCUGGCGUGGCGGGGAUAACCCCAACGGAGCA ...............(..)...............(..(........)..) >AACY020533904.1/2663-2615 GCGACCCCACAACGGCUUCCUGGCGUGGGGACACACACAUAAUGGAGCA ...............(..)...............(.(........)..) >ABCR01000003.1/393478-393430 AACCCGUCACAACGGCUUCCUGGCGUGACGGCUGACAUACAAUGGAGCA ...............(..)...............(.(........)..) >CP000578.1/343169-343120 CAACCGUCACAACGGCUUCCUGGCGUGACGGGGUUAACCCCAACGGAGCA ...............(..)...............(..(........)..) >AACY022514310.1/232-279 AAUGUUCUACAACGGCUUCCUGACGUAGGGCAAUUCUUUUUUGGAGCA ...............(..)...............((........)..) >ABID01000011.1/17084-17036 AGAGCAUCACAACGGCUUCCUGACGUGGUGCGUAAUUUUUAUUGGAGCA ...............(..)...............(.(........)..) >AACY020253271.1/246-293 AAUUGCACGCAACGGCUUCCUGACGCGUGAGUUUUAAUUAUCGGAGCA ...............(..)...............((........)..) >ABXS01000051.1/24818-24865 AAUCUGCCACAACGGCUUCCUGACGUGGCUAUUUAAUCUAUUGGAGCA ...............(..)...............((........)..) >AACY020526688.1/2154-2202 CUCCUGUCACAACGGCUUCCUGGCGUGGCGGGCAACAUCCAAUGGAGCA ...............(..)...............(.(........)..) >AAYC01000001.1/142050-142098 UACCUGUCACAACGGCUUCCUGGCGUGACGAGGUGACCUCAGUGGAGCA ...............(..)...............(.(........)..) >ABXE01000008.1/209807-209759 AGACUGCCACAACGGCUUCCUGACGUGGUGGAAAAAUCUUACUGGAGCA ...............(..)...............(.(........)..) >ABSH01000031.1/84911-84863 ACUCGUCCGCAACGGCUUCCUGACGCGGAUCGACAUUUAAACUGGAGCA ...............(..)...............(.(........)..) >AAYA01000008.1/121966-121918 ACCCCGUCACAACGGCUUCCUGGCGUGACGGAGAAACCCGAAUGGAGCA ...............(..)...............(.(........)..) >AACY021083615.1/454-500 CCGUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA ...............(..)...............((.......)..) >AACY020522644.1/2673-2625 AUCUCGCCACAACGGCUUCCUGACGUGGCGGCAGAACCCUAAUGGAGCA ...............(..)...............(.(........)..)
3		C(UN)C ((A)GC)A (AA()RN)			32	69.6
>ABSH01000031.1/84911-84863 ACUCGUCCGCAACGGCUUCCUGACGCGGAUCGACAUUUAAACUGGAGCA .........(..(..(..)..)..).........(.(........)..) >AAXZ01000012.1/36217-36265 UGUCCCCCUCAACGGCUUCCUGACGAGGCGGGCUUAACAAAACGGAGCA .........(..(..(..)..)..).........(.(........)..) >AACY020245805.1/1080-1127 UCCUACACGCAACGGCUUCCUGACGCGUGAGGUGUAAUCAUUGGAGCA .........(..(..(..)..)..).........(..(......)..) >AACY023873338.1/90-135 UAGCACGCAACGGCUUCCUGACGCGUGAGCUUUAAUUAUCGGAGCA .......(..(..(..)..)..).........(.(.......)..) >ABXS01000051.1/24818-24865 AAUCUGCCACAACGGCUUCCUGACGUGGCUAUUUAAUCUAUUGGAGCA .........(..(..(..)..)..)........(..(.......)..) >AATQ01000051.1/20133-20085 UCCCCGUCACAACGGCUUCCUGGCGUGACGGCUGGUACCCAAUGGAGCA .........(..(..(..)..)..).........(.(........)..) >AACY022220959.1/246-198 GUGCUGUCACAACGGCUUCCUGGCGUGGCGGCGAAAACCUAAUGGAGCA .........(..(..(..)..)..).........(.(........)..) >AACY020533904.1/2663-2615 GCGACCCCACAACGGCUUCCUGGCGUGGGGACACACACAUAAUGGAGCA .........(..(..(..)..)..).........(.(........)..) >AAFZ01022139.1/317-268 AUGCCGCCCCAACGGCUUCCUGACGGGGCGGAUUCACUUUAAAUGGAGCA .........(..(..(..)..)..).........(..(........)..) >AACY020145469.1/1022-977 UGGCACGCAACGGCUUCCUGACGCGUGAGAUAAAAUUAUUGGAGCA .......(..(..(..)..)..).........(.(.......)..) >AACY022603193.1/622-575 UGAAACUUAUAACGGCUACCUGAAGUAAGUUUUUUUAUAAACGGAGCA .........(..(..(..)..)..).........((........)..) >CP000489.1/1874599-1874647 UGACCGCCACAACGGCUUCCUGGCGUGGCGGCGUCAUUUCAACGGAGCA .........(..(..(..)..)..).........(..(.......)..) >AAYB01000002.1/503668-503715 AUUCUGUCACAACGGCUUCCUGACGUGGCAGAGAUUUUUAAUGGAGCA .........(..(..(..)..)..).........((........)..) >ABSK01000009.1/52599-52551 UUUUAUCCACAACGGCUUCCUGAAGUGGAUCGACAUUUAAACUGGAGCA .........(..(..(..)..)..).........(.(........)..) >AAYC01000001.1/142050-142098 UACCUGUCACAACGGCUUCCUGGCGUGACGAGGUGACCUCAGUGGAGCA .........(..(..(..)..)..).........(.(........)..) >AAYA01000008.1/121966-121918 ACCCCGUCACAACGGCUUCCUGGCGUGACGGAGAAACCCGAAUGGAGCA .........(..(..(..)..)..).........(.(........)..) >ABCR01000003.1/393478-393430 AACCCGUCACAACGGCUUCCUGGCGUGACGGCUGACAUACAAUGGAGCA .........(..(..(..)..)..).........(.(........)..) >CP000830.1/1046963-1046915 CCGACGCUGCAACGGCUUCCUGGCGCAGCGGUCGCUAUUCAAUGGAGCA .........(..(..(..)..)..).........(..(.......)..) >AACY021643013.1/428-383 UGGCACGCAACGGCUUCCUGACGCGUGAGAUUGAAUUAUUGGAGCA .......(..(..(..)..)..).........(.(.......)..) >AACY021083615.1/454-500 CCGUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA .........(..(..(..)..)..).........((.......)..) >AACY020522644.1/2673-2625 AUCUCGCCACAACGGCUUCCUGACGUGGCGGCAGAACCCUAAUGGAGCA .........(..(..(..)..)..).........(.(........)..) >ABIE01000005.1/70619-70571 UUACUGCCACAACGGCUUCCUGGCGUGGCAGGCUAAACCCAACGGAGCA .........(..(..(..)..)..).........(.(........)..) >AACY022370156.1/216-170 UCCUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA .........(..(..(..)..)..).........((.......)..) >ABID01000011.1/17084-17036 AGAGCAUCACAACGGCUUCCUGACGUGGUGCGUAAUUUUUAUUGGAGCA .........(..(..(..)..)..).........(.(........)..) >CP000377.1/211359-211407 AUGCCGCCACAACGGCUUCCUGGCGUGGCGGAUCUCAUCCAAUGGAGCA .........(..(..(..)..)..).........(.(........)..) >AACY020081998.1/989-1034 AGACACGCAACGGCUUCCUGACGCGUGAAAUUAAAUUAUUGGAGCA .......(..(..(..)..)..).........(.(.......)..) >ABXF01000008.1/119484-119533 UACCUGCCACAACGGCUUCCUGGCGUGGCGGGCUGAACCUCAAUGGAGCA .........(..(..(..)..)..).........(.(.........)..) >AACY020526688.1/2154-2202 CUCCUGUCACAACGGCUUCCUGGCGUGGCGGGCAACAUCCAAUGGAGCA .........(..(..(..)..)..).........(.(........)..) >AACY022514310.1/232-279 AAUGUUCUACAACGGCUUCCUGACGUAGGGCAAUUCUUUUUUGGAGCA .........(..(..(..)..)..).........((........)..) >AACY020589009.1/251-203 ACGUCGUCACAACGGCUUCCUGGCGUGACGAUACACAUCUAAUGGAGCA .........(..(..(..)..)..).........(.(........)..) >AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA .........(..(..(..)..)..).........((.........)..) >CP000264.1/678143-678190 ACUCCUCCACAACGGCUUCCUGACGUGGGGGAUUAUUUGAAUGGAGCA .........(..(..(..)..)..).........((........)..)
4		C(UN)C ((A)GC)A (AA()RN) ((C)U)G			30	65.2
>AACY020522644.1/2673-2625 AUCUCGCCACAACGGCUUCCUGACGUGGCGGCAGAACCCUAAUGGAGCA .........(..((.(..)).)..).........(.(........)..) >AACY022603193.1/622-575 UGAAACUUAUAACGGCUACCUGAAGUAAGUUUUUUUAUAAACGGAGCA .........(..((.(..)).)..).........((........)..) >AACY020145469.1/1022-977 UGGCACGCAACGGCUUCCUGACGCGUGAGAUAAAAUUAUUGGAGCA .......(..((.(..)).)..).........(.(.......)..) >AAFZ01022139.1/317-268 AUGCCGCCCCAACGGCUUCCUGACGGGGCGGAUUCACUUUAAAUGGAGCA .........(..((.(..)).)..).........(..(........)..) >AACY020081998.1/989-1034 AGACACGCAACGGCUUCCUGACGCGUGAAAUUAAAUUAUUGGAGCA .......(..((.(..)).)..).........(.(.......)..) >ABXF01000008.1/119484-119533 UACCUGCCACAACGGCUUCCUGGCGUGGCGGGCUGAACCUCAAUGGAGCA .........(..((.(..)).)..).........(.(.........)..) >AACY020526688.1/2154-2202 CUCCUGUCACAACGGCUUCCUGGCGUGGCGGGCAACAUCCAAUGGAGCA .........(..((.(..)).)..).........(.(........)..) >AACY022514310.1/232-279 AAUGUUCUACAACGGCUUCCUGACGUAGGGCAAUUCUUUUUUGGAGCA .........(..((.(..)).)..).........((........)..) >AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA .........(..((.(..)).)..).........((.........)..) >AAYA01000008.1/121966-121918 ACCCCGUCACAACGGCUUCCUGGCGUGACGGAGAAACCCGAAUGGAGCA .........(..((.(..)).)..).........(.(........)..) >ABSH01000031.1/84911-84863 ACUCGUCCGCAACGGCUUCCUGACGCGGAUCGACAUUUAAACUGGAGCA .........(..((.(..)).)..).........(.(........)..) >CP000264.1/678143-678190 ACUCCUCCACAACGGCUUCCUGACGUGGGGGAUUAUUUGAAUGGAGCA .........(..((.(..)).)..).........((........)..) >CP000489.1/1874599-1874647 UGACCGCCACAACGGCUUCCUGGCGUGGCGGCGUCAUUUCAACGGAGCA .........(..((.(..)).)..).........(..(.......)..) >ABIE01000005.1/70619-70571 UUACUGCCACAACGGCUUCCUGGCGUGGCAGGCUAAACCCAACGGAGCA .........(..((.(..)).)..).........(.(........)..) >AAYB01000002.1/503668-503715 AUUCUGUCACAACGGCUUCCUGACGUGGCAGAGAUUUUUAAUGGAGCA .........(..((.(..)).)..).........((........)..) >AACY022220959.1/246-198 GUGCUGUCACAACGGCUUCCUGGCGUGGCGGCGAAAACCUAAUGGAGCA .........(..((.(..)).)..).........(.(........)..) >AACY020533904.1/2663-2615 GCGACCCCACAACGGCUUCCUGGCGUGGGGACACACACAUAAUGGAGCA .........(..((.(..)).)..).........(.(........)..) >AACY023873338.1/90-135 UAGCACGCAACGGCUUCCUGACGCGUGAGCUUUAAUUAUCGGAGCA .......(..((.(..)).)..).........(.(.......)..) >AACY021083615.1/454-500 CCGUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA .........(..((.(..)).)..).........((.......)..) >AATQ01000051.1/20133-20085 UCCCCGUCACAACGGCUUCCUGGCGUGACGGCUGGUACCCAAUGGAGCA .........(..((.(..)).)..).........(.(........)..) >AACY021643013.1/428-383 UGGCACGCAACGGCUUCCUGACGCGUGAGAUUGAAUUAUUGGAGCA .......(..((.(..)).)..).........(.(.......)..) >ABSK01000009.1/52599-52551 UUUUAUCCACAACGGCUUCCUGAAGUGGAUCGACAUUUAAACUGGAGCA .........(..((.(..)).)..).........((.........)..) >CP000830.1/1046963-1046915 CCGACGCUGCAACGGCUUCCUGGCGCAGCGGUCGCUAUUCAAUGGAGCA .........(..((.(..)).)..).........(..(.......)..) >ABCR01000003.1/393478-393430 AACCCGUCACAACGGCUUCCUGGCGUGACGGCUGACAUACAAUGGAGCA .........(..((.(..)).)..).........(.(........)..) >AAYC01000001.1/142050-142098 UACCUGUCACAACGGCUUCCUGGCGUGACGAGGUGACCUCAGUGGAGCA .........(..((.(..)).)..).........(.(........)..) >AAXZ01000012.1/36217-36265 UGUCCCCCUCAACGGCUUCCUGACGAGGCGGGCUUAACAAAACGGAGCA .........(..((.(..)).)..).........(.(........)..) >CP000377.1/211359-211407 AUGCCGCCACAACGGCUUCCUGGCGUGGCGGAUCUCAUCCAAUGGAGCA .........(..((.(..)).)..).........(.(........)..) >ABID01000011.1/17084-17036 AGAGCAUCACAACGGCUUCCUGACGUGGUGCGUAAUUUUUAUUGGAGCA .........(..((.(..)).)..).........(.(........)..) >AACY020589009.1/251-203 ACGUCGUCACAACGGCUUCCUGGCGUGACGAUACACAUCUAAUGGAGCA .........(..((.(..)).)..).........(.(........)..) >AACY022370156.1/216-170 UCCUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA .........(..((.(..)).)..).........((.......)..)
5		C(UN)C ((A)GC)A (AA()RN) ((C)U)G ((G)G)A			25	54.3
>AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA .........(..((.(..)).)..).........((.(.....).)..) >AAYA01000008.1/121966-121918 ACCCCGUCACAACGGCUUCCUGGCGUGACGGAGAAACCCGAAUGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >AACY022220959.1/246-198 GUGCUGUCACAACGGCUUCCUGGCGUGGCGGCGAAAACCUAAUGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >AACY020522644.1/2673-2625 AUCUCGCCACAACGGCUUCCUGACGUGGCGGCAGAACCCUAAUGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >AAYB01000002.1/503668-503715 AUUCUGUCACAACGGCUUCCUGACGUGGCAGAGAUUUUUAAUGGAGCA .........(..((.(..)).)..).........(((.....).)..) >ABSK01000009.1/52599-52551 UUUUAUCCACAACGGCUUCCUGAAGUGGAUCGACAUUUAAACUGGAGCA .........(..((.(..)).)..).........((.(.....).)..) >AACY020081998.1/989-1034 AGACACGCAACGGCUUCCUGACGCGUGAAAUUAAAUUAUUGGAGCA .......(..((.(..)).)..).........(.((....).)..) >AACY022370156.1/216-170 UCCUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA .........(..((.(..)).)..).........(((....).)..) >ABID01000011.1/17084-17036 AGAGCAUCACAACGGCUUCCUGACGUGGUGCGUAAUUUUUAUUGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >AACY021083615.1/454-500 CCGUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA .........(..((.(..)).)..).........(((....).)..) >AACY022603193.1/622-575 UGAAACUUAUAACGGCUACCUGAAGUAAGUUUUUUUAUAAACGGAGCA .........(..((.(..)).)..).........(((.....).)..) >CP000264.1/678143-678190 ACUCCUCCACAACGGCUUCCUGACGUGGGGGAUUAUUUGAAUGGAGCA .........(..((.(..)).)..).........(((.....).)..) >CP000377.1/211359-211407 AUGCCGCCACAACGGCUUCCUGGCGUGGCGGAUCUCAUCCAAUGGAGCA .........(..((.(..)).)..).........(..((....).)..) >AATQ01000051.1/20133-20085 UCCCCGUCACAACGGCUUCCUGGCGUGACGGCUGGUACCCAAUGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >ABSH01000031.1/84911-84863 ACUCGUCCGCAACGGCUUCCUGACGCGGAUCGACAUUUAAACUGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >AACY021643013.1/428-383 UGGCACGCAACGGCUUCCUGACGCGUGAGAUUGAAUUAUUGGAGCA .......(..((.(..)).)..).........(.((....).)..) >AAFZ01022139.1/317-268 AUGCCGCCCCAACGGCUUCCUGACGGGGCGGAUUCACUUUAAAUGGAGCA .........(..((.(..)).)..).........(..((.....).)..) >AAYC01000001.1/142050-142098 UACCUGUCACAACGGCUUCCUGGCGUGACGAGGUGACCUCAGUGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >ABIE01000005.1/70619-70571 UUACUGCCACAACGGCUUCCUGGCGUGGCAGGCUAAACCCAACGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >ABCR01000003.1/393478-393430 AACCCGUCACAACGGCUUCCUGGCGUGACGGCUGACAUACAAUGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >CP000830.1/1046963-1046915 CCGACGCUGCAACGGCUUCCUGGCGCAGCGGUCGCUAUUCAAUGGAGCA .........(..((.(..)).)..).........(..((....).)..) >ABXF01000008.1/119484-119533 UACCUGCCACAACGGCUUCCUGGCGUGGCGGGCUGAACCUCAAUGGAGCA .........(..((.(..)).)..).........(.(.(.....).)..) >AAXZ01000012.1/36217-36265 UGUCCCCCUCAACGGCUUCCUGACGAGGCGGGCUUAACAAAACGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >AACY020533904.1/2663-2615 GCGACCCCACAACGGCUUCCUGGCGUGGGGACACACACAUAAUGGAGCA .........(..((.(..)).)..).........(.((.....).)..) >CP000489.1/1874599-1874647 UGACCGCCACAACGGCUUCCUGGCGUGGCGGCGUCAUUUCAACGGAGCA .........(..((.(..)).)..).........(..((....).)..)

>AACY021643013.1/428-383 UGGCACGCAACGGCUUCCUGACGCGUGAGAUUGAAUUAUUGGAGCA .............(..)............................. .............(..)...............(.(.......)..) .......(..(..(..)..)..).........(.(.......)..) .......(..((.(..)).)..).........(.(.......)..) .......(..((.(..)).)..).........(.((....).)..) >AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA ...............(..).............................. ...............(..)...............((.........)..) .........(..(..(..)..)..).........((.........)..) .........(..((.(..)).)..).........((.........)..) .........(..((.(..)).)..).........((.(.....).)..) >ABCR01000003.1/393478-393430 AACCCGUCACAACGGCUUCCUGGCGUGACGGCUGACAUACAAUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >ABIE01000005.1/70619-70571 UUACUGCCACAACGGCUUCCUGGCGUGGCAGGCUAAACCCAACGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >CP000377.1/211359-211407 AUGCCGCCACAACGGCUUCCUGGCGUGGCGGAUCUCAUCCAAUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(..((....).)..) >ABSH01000031.1/84911-84863 ACUCGUCCGCAACGGCUUCCUGACGCGGAUCGACAUUUAAACUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >ABID01000011.1/17084-17036 AGAGCAUCACAACGGCUUCCUGACGUGGUGCGUAAUUUUUAUUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >ABXF01000008.1/119484-119533 UACCUGCCACAACGGCUUCCUGGCGUGGCGGGCUGAACCUCAAUGGAGCA ...............(..)............................... ...............(..)...............(.(.........)..) .........(..(..(..)..)..).........(.(.........)..) .........(..((.(..)).)..).........(.(.........)..) .........(..((.(..)).)..).........(.(.(.....).)..) >AACY021083615.1/454-500 CCGUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA ...............(..)............................ ...............(..)...............((.......)..) .........(..(..(..)..)..).........((.......)..) .........(..((.(..)).)..).........((.......)..) .........(..((.(..)).)..).........(((....).)..) >AACY020533904.1/2663-2615 GCGACCCCACAACGGCUUCCUGGCGUGGGGACACACACAUAAUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >AAFZ01022139.1/317-268 AUGCCGCCCCAACGGCUUCCUGACGGGGCGGAUUCACUUUAAAUGGAGCA ...............(..)............................... ...............(..)...............(..(........)..) .........(..(..(..)..)..).........(..(........)..) .........(..((.(..)).)..).........(..(........)..) .........(..((.(..)).)..).........(..((.....).)..) >AATQ01000051.1/20133-20085 UCCCCGUCACAACGGCUUCCUGGCGUGACGGCUGGUACCCAAUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >AAXZ01000012.1/36217-36265 UGUCCCCCUCAACGGCUUCCUGACGAGGCGGGCUUAACAAAACGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >AACY022370156.1/216-170 UCCUAGCUGCAACGGCUUCCUGGCGCAGCUUACAUUUUAUUGGAGCA ...............(..)............................ ...............(..)...............((.......)..) .........(..(..(..)..)..).........((.......)..) .........(..((.(..)).)..).........((.......)..) .........(..((.(..)).)..).........(((....).)..) >CP000489.1/1874599-1874647 UGACCGCCACAACGGCUUCCUGGCGUGGCGGCGUCAUUUCAACGGAGCA ...............(..).............................. ...............(..)...............(..(.......)..) .........(..(..(..)..)..).........(..(.......)..) .........(..((.(..)).)..).........(..(.......)..) .........(..((.(..)).)..).........(..((....).)..) >AACY022603193.1/622-575 UGAAACUUAUAACGGCUACCUGAAGUAAGUUUUUUUAUAAACGGAGCA ...............(..)............................. ...............(..)...............((........)..) .........(..(..(..)..)..).........((........)..) .........(..((.(..)).)..).........((........)..) .........(..((.(..)).)..).........(((.....).)..) >AACY022220959.1/246-198 GUGCUGUCACAACGGCUUCCUGGCGUGGCGGCGAAAACCUAAUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >AACY020081998.1/989-1034 AGACACGCAACGGCUUCCUGACGCGUGAAAUUAAAUUAUUGGAGCA .............(..)............................. .............(..)...............(.(.......)..) .......(..(..(..)..)..).........(.(.......)..) .......(..((.(..)).)..).........(.(.......)..) .......(..((.(..)).)..).........(.((....).)..) >ABSK01000009.1/52599-52551 UUUUAUCCACAACGGCUUCCUGAAGUGGAUCGACAUUUAAACUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........((.........)..) .........(..((.(..)).)..).........((.(.....).)..) >CP000264.1/678143-678190 ACUCCUCCACAACGGCUUCCUGACGUGGGGGAUUAUUUGAAUGGAGCA ...............(..)............................. ...............(..)...............((........)..) .........(..(..(..)..)..).........((........)..) .........(..((.(..)).)..).........((........)..) .........(..((.(..)).)..).........(((.....).)..) >CP000830.1/1046963-1046915 CCGACGCUGCAACGGCUUCCUGGCGCAGCGGUCGCUAUUCAAUGGAGCA ...............(..).............................. ...............(..)...............(..(.......)..) .........(..(..(..)..)..).........(..(.......)..) .........(..((.(..)).)..).........(..(.......)..) .........(..((.(..)).)..).........(..((....).)..) >AAYC01000001.1/142050-142098 UACCUGUCACAACGGCUUCCUGGCGUGACGAGGUGACCUCAGUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >AAYB01000002.1/503668-503715 AUUCUGUCACAACGGCUUCCUGACGUGGCAGAGAUUUUUAAUGGAGCA ...............(..)............................. ...............(..)...............((........)..) .........(..(..(..)..)..).........((........)..) .........(..((.(..)).)..).........((........)..) .........(..((.(..)).)..).........(((.....).)..) >AAYA01000008.1/121966-121918 ACCCCGUCACAACGGCUUCCUGGCGUGACGGAGAAACCCGAAUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >AACY020522644.1/2673-2625 AUCUCGCCACAACGGCUUCCUGACGUGGCGGCAGAACCCUAAUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) .........(..((.(..)).)..).........(.((.....).)..) >AACY020145469.1/1022-977 UGGCACGCAACGGCUUCCUGACGCGUGAGAUAAAAUUAUUGGAGCA .............(..)............................. .............(..)...............(.(.......)..) .......(..(..(..)..)..).........(.(.......)..) .......(..((.(..)).)..).........(.(.......)..) >AACY022514310.1/232-279 AAUGUUCUACAACGGCUUCCUGACGUAGGGCAAUUCUUUUUUGGAGCA ...............(..)............................. ...............(..)...............((........)..) .........(..(..(..)..)..).........((........)..) .........(..((.(..)).)..).........((........)..) >AACY020589009.1/251-203 ACGUCGUCACAACGGCUUCCUGGCGUGACGAUACACAUCUAAUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) >AACY023873338.1/90-135 UAGCACGCAACGGCUUCCUGACGCGUGAGCUUUAAUUAUCGGAGCA .............(..)............................. .............(..)...............(.(.......)..) .......(..(..(..)..)..).........(.(.......)..) .......(..((.(..)).)..).........(.(.......)..) >AACY020526688.1/2154-2202 CUCCUGUCACAACGGCUUCCUGGCGUGGCGGGCAACAUCCAAUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) .........(..(..(..)..)..).........(.(........)..) .........(..((.(..)).)..).........(.(........)..) >ABXS01000051.1/24818-24865 AAUCUGCCACAACGGCUUCCUGACGUGGCUAUUUAAUCUAUUGGAGCA ...............(..)............................. ...............(..)...............((........)..) .........(..(..(..)..)..)........(..(.......)..) >AACY020245805.1/1080-1127 UCCUACACGCAACGGCUUCCUGACGCGUGAGGUGUAAUCAUUGGAGCA ...............(..)............................. ...............(..)...............((........)..) .........(..(..(..)..)..).........(..(......)..) >AACY020255086.1/785-738 UAUUGCACGCAACGGCUUCCUGACGCGUGAGUUUUAAUUAUCGGAGCA ...............(..)............................. ...............(..)...............(.(.......)..) >AATR01000003.1/91067-91114 UAAGGCUUACAACGGCUACCUGAAGUAAGUUGACAUAAAAACGGAGCA ...............(..)............................. ...............(..)...............((........)..) >CP000578.1/343169-343120 CAACCGUCACAACGGCUUCCUGGCGUGACGGGGUUAACCCCAACGGAGCA ...............(..)............................... ...............(..)...............(..(........)..) >AACY020253271.1/246-293 AAUUGCACGCAACGGCUUCCUGACGCGUGAGUUUUAAUUAUCGGAGCA ...............(..)............................. ...............(..)...............((........)..) >ABXE01000008.1/209807-209759 AGACUGCCACAACGGCUUCCUGACGUGGUGGAAAAAUCUUACUGGAGCA ...............(..).............................. ...............(..)...............(.(........)..) >AACY022262901.1/198-151 ACAUGUACGCAACGGCUUCCUGGCGCGUGAACCGUAAUUAUUGGAGCA ...............(..)............................. ...............(..)...............(.(.......)..) >AACY023759949.1/393-346 UAUUGCACGCAACGGCUUCCUGACGCGUGAGUUGUAAUUAUCGGAGCA ...............(..)............................. ...............(..)...............(.(.......)..) >CP000662.1/776419-776468 CAACCGUCACAACGGCUUCCUGGCGUGGCGGGGAUAACCCCAACGGAGCA ...............(..)............................... ...............(..)...............(..(........)..) >AACY023829178.1/189-238 GCGCUGCCACAACGGCUUCCUGGCGUGGCGGUCUGACAGUCAAUGGAGCA ...............(..)............................... >CP000362.1/3781791-3781742 AGCGAACCACAACGGCUUCCUGACGUGGUUCUUCAUUGGCGAUUGGAGCG ...............(..)............................... >ABXM01000011.1/241752-241702 UUACUGCCACAACGGCUUCCUGGCGUGGCAGGCUGAACCCCCAACGGAGCA ...............(..)................................ >AACY020525991.1/1534-1483 CCGCUGUCACAACGGCUUCCUGGCGUGGCGGCUAAACCAUUUUAUCGGAGCA ...............(..)................................. >CP000032.1/9372-9422 GACCUGCCACAACGGCUUCCUGGCGUGGCGAGGGAAACCUUCAAUGGAGCA ...............(..)................................ >AACY021789724.1/224-271 UGAUGCACGCAACGGCUUCCUGACGCGUGAGAUUAAAUUAUUGGAGCA ...............(..).............................

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	C(UN)C			< 0.001		172

AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA .........1.........2.........3.........4......... 1234567890123456789012345678901234567890123456789
2	((A)GC)A			< 0.001		89.8

AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA .........1.........2.........3.........4......... 1234567890123456789012345678901234567890123456789
3	(AA()RN)			< 0.001		31.7

AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA .........1.........2.........3.........4......... 1234567890123456789012345678901234567890123456789
4	((C)U)G			< 0.001		5.72

AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA .........1.........2.........3.........4......... 1234567890123456789012345678901234567890123456789
5	((G)G)A			< 0.001		7.94

AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA .........1.........2.........3.........4......... 1234567890123456789012345678901234567890123456789
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	C(UN)C			< 0.001		172

AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA .........1.........2.........3.........4......... 1234567890123456789012345678901234567890123456789
2	Y(UNY)Y			< 0.001		10.3

AAFY01026626.1/203-251 GAAUUGCUACAACGGCUUCCUGACGUGGCGAUCUAUAUGAACUGGAGCA .........1.........2.........3.........4......... 1234567890123456789012345678901234567890123456789
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).