D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

Small nucleolar RNA SNORA27   (Rfam: RF00443)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
A(CY(Y))
R(YNA)R
((Y)U)U
(.UNNU.)
(.UCAR.)
91.3
91.3
91.3
100.0
82.6

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.8 %
(± 0.101 %)
Decision tree:

5-fold cross-validation: 86.9 %
(± 6.59 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 89.8 %
(± 4.85 %)
of AAFC03084615.1/7567-7693
AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
(((((((((((((..(((((((((((((....)))).)))))).))))))))))))).(((((((..))))))).((((((((((...)))))))))))))((((((((((.....))))))))).)
...................................................................................................1...........................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567

abstract shape: (()()())()

Number of sequences
Structure ORBs (out of 23) (%)
1 A(CY(Y))
 18 78.3
>AAPE02035995.1/48107-48232
CACCCCCUUUUCACUUUGUCAAUUGGACUUAUGUCUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUGUCCUUUUAAAACUCAGGCAAACGGGGUGUUUGUUUUGUAUCCUGUCAGAGGAAACAAAA
............(..(.............................))...............................................................................
>FJ915962.1/1-128
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAAUCCUUUUAAAACUCAGGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGUAAACAAAU
............(..(..............................))................................................................................
>AANU01212081.1/6652-6777
AACCCCCUAUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGAUCAUUCAAGUGGGCAAAGGAAAUAUGCUUCAAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAUCCUGUCAGAGGAAGCAAAU
..........................(..(................))..............................................................................
>AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
............(..(..............................))...............................................................................
>AAQR03131808.1/6552-6427
GCCCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGAAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUAUCAAAGGAAAAAAAU
............(..(..............................))..............................................................................
>AAKN02010429.1/3339-3465
AAAGCCCCUUUCACUUUGCCAGUGGGACUUAAUGUCUUCAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCUGGCAAACUAGUGUUUGUCCUGUAACCUGUCAGAGGGAACAGUC
............(..(..............................).)..............................................................................
>CR352531.1/338-470
CACCCUCCUUUCACUUUGCCAGUUAGACACUUUUUUGUCUUGAUUGGUCAUUCAAGGUGGGUAAAGUAUACAUCCUUUUAAAACCCAAGCAAAUGGUGGUCAUUUGUCUUGGAUCCUGUCAGAGGAAACAGGU
............(..(.................................))..................................................................................
>AJ609439.1/1-126
UACCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUGUAUCCUGUCAGAGGAAACAAAU
............(..(..............................))..............................................................................
>AAIY01376848.1/1110-1236
CACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAAGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGGAUCCUGUCAGAGGAAACAGGU
............(..(..............................))...............................................................................
>ABDC01394715.1/4253-4128
AAACCCCUUUUCACUUUGCCAAUCGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUGUCAACGGAAACAAAU
............(..(..............................))..............................................................................
>AAWR02035292.1/38650-38777
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAGGUGGGGGAAAGGAAAAGAUCCUUUUAAAACUCAAGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGGAAACAAAU
............(..(..............................))................................................................................
>AAFR03025660.1/72910-73039
CUCCCCUCUUUCACUUUACCAAUUAGACACAUCAUGUCUUUAUUGGUCAUUCAAGUGGGGUAGAAGAAAUAUCCUUUUAAAACUCAAGCAAACUGGUUGUUUGUCUUGCAUCCUGUCAGAGGAAACAAUC
............(..(................................))................................................................................
>AC124828.14/64217-64345
ACCCCCCCUUUCACUUUGCCAAUUGGACUUAAUGUCUUCAUUGGCCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUUAAGUGUUUGUCUUGUAACCUGUCAGGGGAAACAUUA
............(..(..............................)).................................................................................
>AC005214.1/14143-14018
AAACCCCUGUUCACUUUGCCAAAUGGAUUUGUGUCUUUAUUGCUCAUUAAUUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGGAAAGAAAU
............(..(.............................))...............................................................................
>AAGW02066083.1/70455-70583
CGCCCCCUUUUCACUUUGCCAAUUUGACUUUUUUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAACUAUCCUUUUAAAACUCAAGCAAGCUGAGUGUUUGUCUUGUAACCUGUCAGAGGAAACAAAC
............(..(...............................).)...............................................................................
>EU093991.1/1-131
CCCCCCCUUUCACUUUGCCAGUUAGACAUUUCUCUUGUCUUUAUUGGUCAUUCAAAUGGGGUAAAUUAAUUUCCUUUUAAAACUCAAGCAAACAAAUUUGUUUGUCUUGUAUCCUAUCAGGGGAGACAUUU
...........(..(..................................).)...............................................................................
>AAPN01100359.1/2880-3011
UCCCCCCCUUUCACUUUGCCAGUUAGACAUUUCUCUUGUCUUUAUUGGUCAUUCAAAUGGGGUAAAUUAAUUUCCUUUUAAAACUCAAGCAAACAAAUUUGUUUGUCUUGUAUCCUAUCAGGGGAGACAUUU
............(..(..................................).)...............................................................................
>AANN01406612.1/485-609
UUUUCCCCUUUCACUUUGCCAAUUGGACUUGUCUUUAUUGGUCAUUCAAGUGAGGCAAAGGAAAUACCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAUCCUGUCAGAGGAAACAAAA
..........................(..(.............))................................................................................
2 A(CY(Y))
R(YNA)R
 16 69.6
>AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
............(..(..............................))....................................(...)......................................
>AAPN01100359.1/2880-3011
UCCCCCCCUUUCACUUUGCCAGUUAGACAUUUCUCUUGUCUUUAUUGGUCAUUCAAAUGGGGUAAAUUAAUUUCCUUUUAAAACUCAAGCAAACAAAUUUGUUUGUCUUGUAUCCUAUCAGGGGAGACAUUU
............(..(..................................).)............(...)..............................................................
>EU093991.1/1-131
CCCCCCCUUUCACUUUGCCAGUUAGACAUUUCUCUUGUCUUUAUUGGUCAUUCAAAUGGGGUAAAUUAAUUUCCUUUUAAAACUCAAGCAAACAAAUUUGUUUGUCUUGUAUCCUAUCAGGGGAGACAUUU
...........(..(..................................).)............(...)..............................................................
>AC005214.1/14143-14018
AAACCCCUGUUCACUUUGCCAAAUGGAUUUGUGUCUUUAUUGCUCAUUAAUUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGGAAAGAAAU
............(..(.............................))....................................(...)......................................
>AAPE02035995.1/48107-48232
CACCCCCUUUUCACUUUGUCAAUUGGACUUAUGUCUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUGUCCUUUUAAAACUCAGGCAAACGGGGUGUUUGUUUUGUAUCCUGUCAGAGGAAACAAAA
............(..(.............................))....................................(...)......................................
>ABDC01394715.1/4253-4128
AAACCCCUUUUCACUUUGCCAAUCGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUGUCAACGGAAACAAAU
............(..(..............................))....................................(...).....................................
>AAKN02010429.1/3339-3465
AAAGCCCCUUUCACUUUGCCAGUGGGACUUAAUGUCUUCAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCUGGCAAACUAGUGUUUGUCCUGUAACCUGUCAGAGGGAACAGUC
............(..(..............................).)..............................................................(...)...........
>AAFR03025660.1/72910-73039
CUCCCCUCUUUCACUUUACCAAUUAGACACAUCAUGUCUUUAUUGGUCAUUCAAGUGGGGUAGAAGAAAUAUCCUUUUAAAACUCAAGCAAACUGGUUGUUUGUCUUGCAUCCUGUCAGAGGAAACAAUC
............(..(................................))................................................................(...)...........
>AAIY01376848.1/1110-1236
CACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAAGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGGAUCCUGUCAGAGGAAACAGGU
............(..(..............................))....................................(...)......................................
>AJ609439.1/1-126
UACCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUGUAUCCUGUCAGAGGAAACAAAU
............(..(..............................))....................................(...).....................................
>AAWR02035292.1/38650-38777
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAGGUGGGGGAAAGGAAAAGAUCCUUUUAAAACUCAAGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGGAAACAAAU
............(..(..............................)).....................................(...)......................................
>FJ915962.1/1-128
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAAUCCUUUUAAAACUCAGGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGUAAACAAAU
............(..(..............................)).....................................(...)......................................
>AAGW02066083.1/70455-70583
CGCCCCCUUUUCACUUUGCCAAUUUGACUUUUUUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAACUAUCCUUUUAAAACUCAAGCAAGCUGAGUGUUUGUCUUGUAACCUGUCAGAGGAAACAAAC
............(..(...............................).)...............................................................(...)...........
>AC124828.14/64217-64345
ACCCCCCCUUUCACUUUGCCAAUUGGACUUAAUGUCUUCAUUGGCCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUUAAGUGUUUGUCUUGUAACCUGUCAGGGGAAACAUUA
............(..(..............................)).....................................(...).......................................
>AAQR03131808.1/6552-6427
GCCCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGAAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUAUCAAAGGAAAAAAAU
............(..(..............................))....................................(...).....................................
>CR352531.1/338-470
CACCCUCCUUUCACUUUGCCAGUUAGACACUUUUUUGUCUUGAUUGGUCAUUCAAGGUGGGUAAAGUAUACAUCCUUUUAAAACCCAAGCAAAUGGUGGUCAUUUGUCUUGGAUCCUGUCAGAGGAAACAGGU
............(..(.................................)).....................................(...)........................................
3 A(CY(Y))
R(YNA)R
((Y)U)U
 14 60.9
>AAIY01376848.1/1110-1236
CACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAAGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGGAUCCUGUCAGAGGAAACAGGU
............(..(.......((..........).)........))....................................(...)......................................
>AC124828.14/64217-64345
ACCCCCCCUUUCACUUUGCCAAUUGGACUUAAUGUCUUCAUUGGCCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUUAAGUGUUUGUCUUGUAACCUGUCAGGGGAAACAUUA
............(..(........((.........).)........)).....................................(...).......................................
>ABDC01394715.1/4253-4128
AAACCCCUUUUCACUUUGCCAAUCGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUGUCAACGGAAACAAAU
............(..(.......((..........).)........))....................................(...).....................................
>AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
............(..(.......((..........).)........))....................................(...)......................................
>AAQR03131808.1/6552-6427
GCCCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGAAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUAUCAAAGGAAAAAAAU
............(..(.......((..........).)........))....................................(...).....................................
>AAKN02010429.1/3339-3465
AAAGCCCCUUUCACUUUGCCAGUGGGACUUAAUGUCUUCAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCUGGCAAACUAGUGUUUGUCCUGUAACCUGUCAGAGGGAACAGUC
............(..(........((.........).)........).)..............................................................(...)...........
>AAFR03025660.1/72910-73039
CUCCCCUCUUUCACUUUACCAAUUAGACACAUCAUGUCUUUAUUGGUCAUUCAAGUGGGGUAGAAGAAAUAUCCUUUUAAAACUCAAGCAAACUGGUUGUUUGUCUUGCAUCCUGUCAGAGGAAACAAUC
............(..(........((...........).)........))................................................................(...)...........
>CR352531.1/338-470
CACCCUCCUUUCACUUUGCCAGUUAGACACUUUUUUGUCUUGAUUGGUCAUUCAAGGUGGGUAAAGUAUACAUCCUUUUAAAACCCAAGCAAAUGGUGGUCAUUUGUCUUGGAUCCUGUCAGAGGAAACAGGU
............(..(........((............).)........)).....................................(...)........................................
>FJ915962.1/1-128
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAAUCCUUUUAAAACUCAGGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGUAAACAAAU
............(..(.......((..........).)........)).....................................(...)......................................
>AJ609439.1/1-126
UACCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUGUAUCCUGUCAGAGGAAACAAAU
............(..(.......((..........).)........))....................................(...).....................................
>AAWR02035292.1/38650-38777
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAGGUGGGGGAAAGGAAAAGAUCCUUUUAAAACUCAAGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGGAAACAAAU
............(..(.......((..........).)........)).....................................(...)......................................
>AAGW02066083.1/70455-70583
CGCCCCCUUUUCACUUUGCCAAUUUGACUUUUUUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAACUAUCCUUUUAAAACUCAAGCAAGCUGAGUGUUUGUCUUGUAACCUGUCAGAGGAAACAAAC
............(..(........((..........).)........).)...............................................................(...)...........
>AAPE02035995.1/48107-48232
CACCCCCUUUUCACUUUGUCAAUUGGACUUAUGUCUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUGUCCUUUUAAAACUCAGGCAAACGGGGUGUUUGUUUUGUAUCCUGUCAGAGGAAACAAAA
............(..(.......(.(........).)........))....................................(...)......................................
>AC005214.1/14143-14018
AAACCCCUGUUCACUUUGCCAAAUGGAUUUGUGUCUUUAUUGCUCAUUAAUUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGGAAAGAAAU
............(..(.......(.(........).).......).)....................................(...)......................................
4 A(CY(Y))
R(YNA)R
((Y)U)U
(.UNNU.)
 9 39.1
>AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
............(..(.......((..(....)..).)........))....................................(...)......................................
>AAPE02035995.1/48107-48232
CACCCCCUUUUCACUUUGUCAAUUGGACUUAUGUCUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUGUCCUUUUAAAACUCAGGCAAACGGGGUGUUUGUUUUGUAUCCUGUCAGAGGAAACAAAA
............(..(.......(.(.(....).).)........))....................................(...)......................................
>AC124828.14/64217-64345
ACCCCCCCUUUCACUUUGCCAAUUGGACUUAAUGUCUUCAUUGGCCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUUAAGUGUUUGUCUUGUAACCUGUCAGGGGAAACAUUA
............(..(........((.(.....).).)........)).....................................(...).......................................
>FJ915962.1/1-128
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAAUCCUUUUAAAACUCAGGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGUAAACAAAU
............(..(.......((..(....)..).)........)).....................................(...)......................................
>ABDC01394715.1/4253-4128
AAACCCCUUUUCACUUUGCCAAUCGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUGUCAACGGAAACAAAU
............(..(.......((..(....)..).)........))....................................(...).....................................
>AAQR03131808.1/6552-6427
GCCCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGAAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUAUCAAAGGAAAAAAAU
............(..(.......((..(....)..).)........))....................................(...).....................................
>AAWR02035292.1/38650-38777
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAGGUGGGGGAAAGGAAAAGAUCCUUUUAAAACUCAAGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGGAAACAAAU
............(..(.......((..(....)..).)........)).....................................(...)......................................
>AAIY01376848.1/1110-1236
CACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAAGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGGAUCCUGUCAGAGGAAACAGGU
............(..(.......((..(....)..).)........))....................................(...)......................................
>AJ609439.1/1-126
UACCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUGUAUCCUGUCAGAGGAAACAAAU
............(..(.......((..(....)..).)........))....................................(...).....................................
5 A(CY(Y))
R(YNA)R
((Y)U)U
(.UNNU.)
(.UCAR.)
 8 34.8
>AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
............(..(.......((..(....)..).)........))....................................(...).....................(.....)..........
>ABDC01394715.1/4253-4128
AAACCCCUUUUCACUUUGCCAAUCGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUGUCAACGGAAACAAAU
............(..(.......((..(....)..).)........))....................................(...).....................(....)..........
>FJ915962.1/1-128
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAAUCCUUUUAAAACUCAGGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGUAAACAAAU
............(..(.......((..(....)..).)........)).....................................(...).....................(.....)..........
>AJ609439.1/1-126
UACCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUGUAUCCUGUCAGAGGAAACAAAU
............(..(.......((..(....)..).)........))....................................(...)....................(.....)..........
>AAQR03131808.1/6552-6427
GCCCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGAAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUAUCAAAGGAAAAAAAU
............(..(.......((..(....)..).)........))....................................(...)....................(.....)..........
>AAWR02035292.1/38650-38777
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAGGUGGGGGAAAGGAAAAGAUCCUUUUAAAACUCAAGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGGAAACAAAU
............(..(.......((..(....)..).)........)).....................................(...).....................(.....)..........
>AAIY01376848.1/1110-1236
CACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAAGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGGAUCCUGUCAGAGGAAACAGGU
............(..(.......((..(....)..).)........))....................................(...).....................(.....)..........
>AAPE02035995.1/48107-48232
CACCCCCUUUUCACUUUGUCAAUUGGACUUAUGUCUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUGUCCUUUUAAAACUCAGGCAAACGGGGUGUUUGUUUUGUAUCCUGUCAGAGGAAACAAAA
............(..(.......(.(.(....).).)........))....................................(...).....................(.....)..........

>AAPE02035995.1/48107-48232
CACCCCCUUUUCACUUUGUCAAUUGGACUUAUGUCUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUGUCCUUUUAAAACUCAGGCAAACGGGGUGUUUGUUUUGUAUCCUGUCAGAGGAAACAAAA
............(..(.............................))...............................................................................
............(..(.............................))....................................(...)......................................
............(..(.......(.(........).)........))....................................(...)......................................
............(..(.......(.(.(....).).)........))....................................(...)......................................
............(..(.......(.(.(....).).)........))....................................(...).....................(.....)..........
>FJ915962.1/1-128
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAAUCCUUUUAAAACUCAGGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGUAAACAAAU
............(..(..............................))................................................................................
............(..(..............................)).....................................(...)......................................
............(..(.......((..........).)........)).....................................(...)......................................
............(..(.......((..(....)..).)........)).....................................(...)......................................
............(..(.......((..(....)..).)........)).....................................(...).....................(.....)..........
>AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
............(..(..............................))...............................................................................
............(..(..............................))....................................(...)......................................
............(..(.......((..........).)........))....................................(...)......................................
............(..(.......((..(....)..).)........))....................................(...)......................................
............(..(.......((..(....)..).)........))....................................(...).....................(.....)..........
>AAQR03131808.1/6552-6427
GCCCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGAAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUAUCAAAGGAAAAAAAU
............(..(..............................))..............................................................................
............(..(..............................))....................................(...).....................................
............(..(.......((..........).)........))....................................(...).....................................
............(..(.......((..(....)..).)........))....................................(...).....................................
............(..(.......((..(....)..).)........))....................................(...)....................(.....)..........
>AJ609439.1/1-126
UACCCCCUUUUCACUUUGCCAGUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUGUAUCCUGUCAGAGGAAACAAAU
............(..(..............................))..............................................................................
............(..(..............................))....................................(...).....................................
............(..(.......((..........).)........))....................................(...).....................................
............(..(.......((..(....)..).)........))....................................(...).....................................
............(..(.......((..(....)..).)........))....................................(...)....................(.....)..........
>AAIY01376848.1/1110-1236
CACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAAGAAAUAUCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGGAUCCUGUCAGAGGAAACAGGU
............(..(..............................))...............................................................................
............(..(..............................))....................................(...)......................................
............(..(.......((..........).)........))....................................(...)......................................
............(..(.......((..(....)..).)........))....................................(...)......................................
............(..(.......((..(....)..).)........))....................................(...).....................(.....)..........
>ABDC01394715.1/4253-4128
AAACCCCUUUUCACUUUGCCAAUCGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGGUGUUUGUCUUGUAUCCUGUCAACGGAAACAAAU
............(..(..............................))..............................................................................
............(..(..............................))....................................(...).....................................
............(..(.......((..........).)........))....................................(...).....................................
............(..(.......((..(....)..).)........))....................................(...).....................................
............(..(.......((..(....)..).)........))....................................(...).....................(....)..........
>AAWR02035292.1/38650-38777
UACCCCCUUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAGGUGGGGGAAAGGAAAAGAUCCUUUUAAAACUCAAGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGGAAACAAAU
............(..(..............................))................................................................................
............(..(..............................)).....................................(...)......................................
............(..(.......((..........).)........)).....................................(...)......................................
............(..(.......((..(....)..).)........)).....................................(...)......................................
............(..(.......((..(....)..).)........)).....................................(...).....................(.....)..........
>AC124828.14/64217-64345
ACCCCCCCUUUCACUUUGCCAAUUGGACUUAAUGUCUUCAUUGGCCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUUAAGUGUUUGUCUUGUAACCUGUCAGGGGAAACAUUA
............(..(..............................)).................................................................................
............(..(..............................)).....................................(...).......................................
............(..(........((.........).)........)).....................................(...).......................................
............(..(........((.(.....).).)........)).....................................(...).......................................
>AAKN02010429.1/3339-3465
AAAGCCCCUUUCACUUUGCCAGUGGGACUUAAUGUCUUCAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAUCCUUUUAAAACUCUGGCAAACUAGUGUUUGUCCUGUAACCUGUCAGAGGGAACAGUC
............(..(..............................).)..............................................................................
............(..(..............................).)..............................................................(...)...........
............(..(........((.........).)........).)..............................................................(...)...........
>CR352531.1/338-470
CACCCUCCUUUCACUUUGCCAGUUAGACACUUUUUUGUCUUGAUUGGUCAUUCAAGGUGGGUAAAGUAUACAUCCUUUUAAAACCCAAGCAAAUGGUGGUCAUUUGUCUUGGAUCCUGUCAGAGGAAACAGGU
............(..(.................................))..................................................................................
............(..(.................................)).....................................(...)........................................
............(..(........((............).)........)).....................................(...)........................................
>AAFR03025660.1/72910-73039
CUCCCCUCUUUCACUUUACCAAUUAGACACAUCAUGUCUUUAUUGGUCAUUCAAGUGGGGUAGAAGAAAUAUCCUUUUAAAACUCAAGCAAACUGGUUGUUUGUCUUGCAUCCUGUCAGAGGAAACAAUC
............(..(................................))................................................................................
............(..(................................))................................................................(...)...........
............(..(........((...........).)........))................................................................(...)...........
>AC005214.1/14143-14018
AAACCCCUGUUCACUUUGCCAAAUGGAUUUGUGUCUUUAUUGCUCAUUAAUUGGGGCAAAGGAAAUAUCCUUUUAAAACUCAGGCAAACUGAGUGUUUGUCUUGUAUCCUGUCAGAGGAAAGAAAU
............(..(.............................))...............................................................................
............(..(.............................))....................................(...)......................................
............(..(.......(.(........).).......).)....................................(...)......................................
>AAGW02066083.1/70455-70583
CGCCCCCUUUUCACUUUGCCAAUUUGACUUUUUUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAACUAUCCUUUUAAAACUCAAGCAAGCUGAGUGUUUGUCUUGUAACCUGUCAGAGGAAACAAAC
............(..(...............................).)...............................................................................
............(..(...............................).)...............................................................(...)...........
............(..(........((..........).)........).)...............................................................(...)...........
>EU093991.1/1-131
CCCCCCCUUUCACUUUGCCAGUUAGACAUUUCUCUUGUCUUUAUUGGUCAUUCAAAUGGGGUAAAUUAAUUUCCUUUUAAAACUCAAGCAAACAAAUUUGUUUGUCUUGUAUCCUAUCAGGGGAGACAUUU
...........(..(..................................).)...............................................................................
...........(..(..................................).)............(...)..............................................................
>AAPN01100359.1/2880-3011
UCCCCCCCUUUCACUUUGCCAGUUAGACAUUUCUCUUGUCUUUAUUGGUCAUUCAAAUGGGGUAAAUUAAUUUCCUUUUAAAACUCAAGCAAACAAAUUUGUUUGUCUUGUAUCCUAUCAGGGGAGACAUUU
............(..(..................................).)...............................................................................
............(..(..................................).)............(...)..............................................................
>AANU01212081.1/6652-6777
AACCCCCUAUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGAUCAUUCAAGUGGGCAAAGGAAAUAUGCUUCAAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAUCCUGUCAGAGGAAGCAAAU
..........................(..(................))..............................................................................
>AANN01406612.1/485-609
UUUUCCCCUUUCACUUUGCCAAUUGGACUUGUCUUUAUUGGUCAUUCAAGUGAGGCAAAGGAAAUACCCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAUCCUGUCAGAGGAAACAAAA
..........................(..(.............))................................................................................

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 A(CY(Y)) < 0.001 9.79
AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
...................................................................................................1...........................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
2 R(YNA)R < 0.001 25.9
AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
...................................................................................................1...........................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
3 ((Y)U)U < 0.001 11.6
AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
...................................................................................................1...........................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
4 (.UCAR.) < 0.001 11.4
AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
...................................................................................................1...........................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
5 (.UNNU.) < 0.001 5.55
AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
...................................................................................................1...........................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 .CG. (URB) < 0.001 0.00749
2 A(CY(Y)) < 0.001 9.79
AAFC03084615.1/7567-7693
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
ACACCCCCUUUCACUUUGCCAAUUGGACUUAUGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAAUAACCUUUUAAAACUCAGGCAAACUGGGUGUUUGUCUUGUAACCUGUCAGAGGAAACAUUG
...................................................................................................1...........................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.......
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).