D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-128   (Rfam: RF00649)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
U(NN(G))
(G()U)
(R()U)
(NNUAN)
A(G(A))
A(G(N))
((A)C)C
((G)A)A
G(G(C))
C(U(R))
100.0
100.0
100.0
93.3
93.3
100.0
100.0
100.0
100.0
100.0
U(NN(G))
(G()U)
(NNUAN)
A(G(N))
((A)C)C
((G)A)A

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.8 %
(± 0.11 %)
Decision tree:

5-fold cross-validation: 86.7 %
(± 13.2 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 93.4 %
(± 6.15 %)
of AADB02231623.1/453-371
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
(.((((((.((((((((.(((.(.(((.((..((.(.((.....)).))..))).))).).))).))))))).).)))))).)
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123

abstract shape: ()

Number of sequences
Structure ORBs (out of 15) (%)
1 U(NN(G))
 14 93.3
>CAAK05043402.1/2817-2901
UCAGUAGUAGGACAGGGGGCCGUUUCUACUGUCAGAGAUGCUGCCACUCGUCUCACAGUGAACCGGUCUCUUUUCCUGCUAUUCA
...............................(..(..................))..............................
>CAAB02004088.1/15719-15636
AGAGAGCCUGGGUACGGGGCCGGGACGCUGUUUGAGAGUCCUCUAUGAAUCUCACAGUGAACCGGUCUCUUUUCCAGCCCCUCA
..............................(..(..................))..............................
>AAPN01333292.1/110-29
UGAGCCGCUGGAUUCGGGGCCGAUACACGGUCUGAGGGGUUUACGAGUCUCACAGUGAACCGGUCUCUUUUUCAGUUGCUCC
..............................(..(..................))............................
>AADN03002591.1/50849-50766
UGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUC
..............................(..(..................))..............................
>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.............................(..(..................))..............................
>BAAF04005951.1/319-236
CAAGGGGCGGGACGCGGGGCCGGGACGCUGUCUGAGAGGCCGCUACGAAUCUCACAGUGAACCGGUCUCUUUUCCCGCCCCUCA
..............................(..(..................))..............................
>CAAE01014622.1/402657-402574
GGAGAGGCUGCAUACGGGGCCGGGACGCUGUUUGAGAGUCCACUAUGAAUCUCACAGUGAACCGGUCUCUUUUGCAGCCCCUUA
..............................(..(..................))..............................
>CU459063.8/87923-87839
GGAGUGCUGGGAGACGGGGCCGUGGCACUGUAUGAGAUUCAUGUAGGCUUUCUCACAGUGAACCGGUCUCUUUUUCCAGCCCUCA
..............................(..(..................).)..............................
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
..............................(..(..................))..............................
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
.............................(..(..................))..............................
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
..............................(..(..................))..............................
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
..............................(..(..................))..............................
>BAAF04002274.1/1102-1018
GUGGCAGUAGAGGAGGGGGCCGUUACACUGUCAGAGAUGUACUCUGAGGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGCUUC
..............................(..(..................).)..............................
>AAVX01050759.1/9619-9536
GGAGCAGCUGGAGAGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCAGGGGCCAC
..............................(..(..................))..............................
2 U(NN(G))
(G()U)
 14 93.3
>AADN03002591.1/50849-50766
UGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUC
............(.(...............(..(..................))...............).)............
>CAAK05043402.1/2817-2901
UCAGUAGUAGGACAGGGGGCCGUUUCUACUGUCAGAGAUGCUGCCACUCGUCUCACAGUGAACCGGUCUCUUUUCCUGCUAUUCA
..(.(..........................(..(..................)).........................).)..
>CAAB02004088.1/15719-15636
AGAGAGCCUGGGUACGGGGCCGGGACGCUGUUUGAGAGUCCUCUAUGAAUCUCACAGUGAACCGGUCUCUUUUCCAGCCCCUCA
..........(.(.................(..(..................)).................).)..........
>CU459063.8/87923-87839
GGAGUGCUGGGAGACGGGGCCGUGGCACUGUAUGAGAUUCAUGUAGGCUUUCUCACAGUGAACCGGUCUCUUUUUCCAGCCCUCA
.........(.(..................(..(..................).)..................).).........
>AAVX01050759.1/9619-9536
GGAGCAGCUGGAGAGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCAGGGGCCAC
...........(.(................(..(..................))................).)...........
>AAPN01333292.1/110-29
UGAGCCGCUGGAUUCGGGGCCGAUACACGGUCUGAGGGGUUUACGAGUCUCACAGUGAACCGGUCUCUUUUUCAGUUGCUCC
.....(.(......................(..(..................))....................).).....
>BAAF04005951.1/319-236
CAAGGGGCGGGACGCGGGGCCGGGACGCUGUCUGAGAGGCCGCUACGAAUCUCACAGUGAACCGGUCUCUUUUCCCGCCCCUCA
............(.(...............(..(..................))...............).)............
>BAAF04002274.1/1102-1018
GUGGCAGUAGAGGAGGGGGCCGUUACACUGUCAGAGAUGUACUCUGAGGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGCUUC
..........(.(.................(..(..................).).................).)..........
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
..(.(.........................(..(..................)).........................).)..
>CAAE01014622.1/402657-402574
GGAGAGGCUGCAUACGGGGCCGGGACGCUGUUUGAGAGUCCACUAUGAAUCUCACAGUGAACCGGUCUCUUUUGCAGCCCCUUA
(.(...........................(..(..................))..........................).).
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
.......(.(....................(..(..................))....................).).......
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
............(.(...............(..(..................))...............).)............
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
.......(.(...................(..(..................))....................).).......
>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.......(.(...................(..(..................))....................).).......
3 U(NN(G))
(G()U)
(R()U)
 12 80.0
>CU459063.8/87923-87839
GGAGUGCUGGGAGACGGGGCCGUGGCACUGUAUGAGAUUCAUGUAGGCUUUCUCACAGUGAACCGGUCUCUUUUUCCAGCCCUCA
.(.(.....(.(..................(..(...................))..................).).....).).
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
(.(....(.(...................(..(..................))....................).)....).)
>CAAB02004088.1/15719-15636
AGAGAGCCUGGGUACGGGGCCGGGACGCUGUUUGAGAGUCCUCUAUGAAUCUCACAGUGAACCGGUCUCUUUUCCAGCCCCUCA
.................(.(.....(.(..(..(..................))..).).....).).................
>CAAE01014622.1/402657-402574
GGAGAGGCUGCAUACGGGGCCGGGACGCUGUUUGAGAGUCCACUAUGAAUCUCACAGUGAACCGGUCUCUUUUGCAGCCCCUUA
.................(.(.....(.(..(..(..................))..).).....).).................
>AADN03002591.1/50849-50766
UGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUC
....(.(.....(.(...............(..(..................))...............).).....).)....
>BAAF04002274.1/1102-1018
GUGGCAGUAGAGGAGGGGGCCGUUACACUGUCAGAGAUGUACUCUGAGGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGCUUC
....(.(....(.(................(..(...................))................).)....).)....
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
(.(....(.(....................(..(..................))....................).)....).)
>BAAF04005951.1/319-236
CAAGGGGCGGGACGCGGGGCCGGGACGCUGUCUGAGAGGCCGCUACGAAUCUCACAGUGAACCGGUCUCUUUUCCCGCCCCUCA
.................(.(.....(.(..(..(..................))..).).....).).................
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
....(.(.....(.(...............(..(..................))...............).).....).)....
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
....(.(.....(.(...............(..(..................))...............).).....).)....
>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
(.(....(.(...................(..(..................))....................).)....).)
>CAAK05043402.1/2817-2901
UCAGUAGUAGGACAGGGGGCCGUUUCUACUGUCAGAGAUGCUGCCACUCGUCUCACAGUGAACCGGUCUCUUUUCCUGCUAUUCA
....(.(......(.(...............(..(..................))..............).)......).)....
4 U(NN(G))
(G()U)
(R()U)
(NNUAN)
 10 66.7
>AADN03002591.1/50849-50766
UGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUC
....(.(.....(.(...............(..(.....(.....)......))...............).).....).)....
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
(.(....(.(....................(..(.....(.....)......))....................).)....).)
>CAAE01014622.1/402657-402574
GGAGAGGCUGCAUACGGGGCCGGGACGCUGUUUGAGAGUCCACUAUGAAUCUCACAGUGAACCGGUCUCUUUUGCAGCCCCUUA
.................(.(.....(.(..(..(......(.....).....))..).).....).).................
>CAAB02004088.1/15719-15636
AGAGAGCCUGGGUACGGGGCCGGGACGCUGUUUGAGAGUCCUCUAUGAAUCUCACAGUGAACCGGUCUCUUUUCCAGCCCCUCA
.................(.(.....(.(..(..(......(.....).....))..).).....).).................
>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
(.(....(.(...................(..(.....(.....)......))....................).)....).)
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
(.(....(.(...................(..(.....(.....)......))....................).)....).)
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
....(.(.....(.(...............(..(.....(.....)......))...............).).....).)....
>CU459063.8/87923-87839
GGAGUGCUGGGAGACGGGGCCGUGGCACUGUAUGAGAUUCAUGUAGGCUUUCUCACAGUGAACCGGUCUCUUUUUCCAGCCCUCA
.(.(.....(.(..................(..(......(.....)......))..................).).....).).
>BAAF04005951.1/319-236
CAAGGGGCGGGACGCGGGGCCGGGACGCUGUCUGAGAGGCCGCUACGAAUCUCACAGUGAACCGGUCUCUUUUCCCGCCCCUCA
.................(.(.....(.(..(..(......(.....).....))..).).....).).................
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
....(.(.....(.(...............(..(.....(.....)......))...............).).....).)....
5 U(NN(G))
(G()U)
(R()U)
(NNUAN)
A(G(A))
 9 60.0
>BAAF04005951.1/319-236
CAAGGGGCGGGACGCGGGGCCGGGACGCUGUCUGAGAGGCCGCUACGAAUCUCACAGUGAACCGGUCUCUUUUCCCGCCCCUCA
.................(.(.....(.(..(..((.(...(.....).))..))..).).....).).................
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
....(.(.....(.(...............(..((.(..(.....)..))..))...............).).....).)....
>CAAE01014622.1/402657-402574
GGAGAGGCUGCAUACGGGGCCGGGACGCUGUUUGAGAGUCCACUAUGAAUCUCACAGUGAACCGGUCUCUUUUGCAGCCCCUUA
.................(.(.....(.(..(..((.(...(.....).))..))..).).....).).................
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
....(.(.....(.(...............(..((.(..(.....)..))..))...............).).....).)....
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
(.(....(.(....................(..((.(..(.....)..))..))....................).)....).)
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
(.(....(.(...................(..((.(..(.....)..))..))....................).)....).)
>CU459063.8/87923-87839
GGAGUGCUGGGAGACGGGGCCGUGGCACUGUAUGAGAUUCAUGUAGGCUUUCUCACAGUGAACCGGUCUCUUUUUCCAGCCCUCA
.(.(.....(.(..................(..((.(...(.....)..))..))..................).).....).).
>AADN03002591.1/50849-50766
UGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUC
....(.(.....(.(...............(..((.(..(.....)..))..))...............).).....).)....
>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
(.(....(.(...................(..((.(..(.....)..))..))....................).)....).)
6 U(NN(G))
(G()U)
(R()U)
(NNUAN)
A(G(A))
A(G(N))
 8 53.3
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
....(.(.....(.(...............(..((.(.((.....)).))..))...............).).....).)....
>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
(.(....(.(...................(..((.(.((.....)).))..))....................).)....).)
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
(.(....(.(...................(..((.(.((.....)).))..))....................).)....).)
>CAAE01014622.1/402657-402574
GGAGAGGCUGCAUACGGGGCCGGGACGCUGUUUGAGAGUCCACUAUGAAUCUCACAGUGAACCGGUCUCUUUUGCAGCCCCUUA
.................(.(.....(.(..(..((.(.(.(.....))))..))..).).....).).................
>BAAF04005951.1/319-236
CAAGGGGCGGGACGCGGGGCCGGGACGCUGUCUGAGAGGCCGCUACGAAUCUCACAGUGAACCGGUCUCUUUUCCCGCCCCUCA
.................(.(.....(.(..(..((.(.(.(.....))))..))..).).....).).................
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
(.(....(.(....................(..((.(.((.....)).))..))....................).)....).)
>AADN03002591.1/50849-50766
UGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUC
....(.(.....(.(...............(..((.(.((.....)).))..))...............).).....).)....
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
....(.(.....(.(...............(..((.(.((.....)).))..))...............).).....).)....
7 U(NN(G))
(G()U)
(R()U)
(NNUAN)
A(G(A))
A(G(N))
((A)C)C
 6 40.0
>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
(.(....(.(..........(.(......(..((.(.((.....)).))..))......).)...........).)....).)
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
(.(....(.(..........(.(......(..((.(.((.....)).))..))......).)...........).)....).)
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
....(.(.....(.(......(.(......(..((.(.((.....)).))..))......).)......).).....).)....
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
(.(....(.(...........(.(......(..((.(.((.....)).))..))......).)...........).)....).)
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
....(.(.....(.(......(.(......(..((.(.((.....)).))..))......).)......).).....).)....
>AADN03002591.1/50849-50766
UGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUC
....(.(.....(.(......(.(......(..((.(.((.....)).))..))......).)......).).....).)....
8 U(NN(G))
(G()U)
(R()U)
(NNUAN)
A(G(A))
A(G(N))
((A)C)C
((G)A)A
 6 40.0
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
(.(....(.(...........(.(.(....(..((.(.((.....)).))..))....).).)...........).)....).)
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
....(.(.....(.(......(.(.(....(..((.(.((.....)).))..))....).).)......).).....).)....
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
....(.(.....(.(......(.(.(....(..((.(.((.....)).))..))....).).)......).).....).)....
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
(.(....(.(..........(.(.(....(..((.(.((.....)).))..))....).).)...........).)....).)
>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
(.(....(.(..........(.(.(....(..((.(.((.....)).))..))....).).)...........).)....).)
>AADN03002591.1/50849-50766
UGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUC
....(.(.....(.(......(.(.(....(..((.(.((.....)).))..))....).).)......).).....).)....
9 U(NN(G))
(G()U)
(R()U)
(NNUAN)
A(G(A))
A(G(N))
((A)C)C
((G)A)A
G(G(C))
 6 40.0
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
(.(....(.(......(.(.(.(.(....(..((.(.((.....)).))..))....).).).).).......).)....).)
>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
(.(....(.(......(.(.(.(.(....(..((.(.((.....)).))..))....).).).).).......).)....).)
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
(.(....(.(.......(.(.(.(.(....(..((.(.((.....)).))..))....).).).).).......).)....).)
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
....(.(.....(.(..(.(.(.(.(....(..((.(.((.....)).))..))....).).).))...).).....).)....
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
....(.(.....(.(..(.(.(.(.(....(..((.(.((.....)).))..))....).).).))...).).....).)....
>AADN03002591.1/50849-50766
UGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUC
....(.(.....(.(..(.(.(.(.(....(..((.(.((.....)).))..))....).).).))...).).....).)....
10 U(NN(G))
(G()U)
(R()U)
(NNUAN)
A(G(A))
A(G(N))
((A)C)C
((G)A)A
G(G(C))
C(U(R))
 5 33.3
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
....(.(.....(.(..(.(.(.(.(.(.((..((.(.((.....)).))..))).).).).).))...).).....).)....
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
....(.(.....(.(..(.(.(.(.(.(.((..((.(.((.....)).))..))).).).).).))...).).....).)....
>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
(.(....(.(......(.(.(.(.(.(.((..((.(.((.....)).))..))).).).).).).).......).)....).)
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
(.(....(.(.......(.(.(.(.(.(.((..((.(.((.....)).))..))).).).).).).).......).)....).)
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
(.(....(.(......(.(.(.(.(.(.((..((.(.((.....)).))..))).).).).).).).......).)....).)

>AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.............................(..(..................))..............................
.......(.(...................(..(..................))....................).).......
(.(....(.(...................(..(..................))....................).)....).)
(.(....(.(...................(..(.....(.....)......))....................).)....).)
(.(....(.(...................(..((.(..(.....)..))..))....................).)....).)
(.(....(.(...................(..((.(.((.....)).))..))....................).)....).)
(.(....(.(..........(.(......(..((.(.((.....)).))..))......).)...........).)....).)
(.(....(.(..........(.(.(....(..((.(.((.....)).))..))....).).)...........).)....).)
(.(....(.(......(.(.(.(.(....(..((.(.((.....)).))..))....).).).).).......).)....).)
(.(....(.(......(.(.(.(.(.(.((..((.(.((.....)).))..))).).).).).).).......).)....).)
>AAHY01081787.1/13703-13786
UGUGCAGUGGGAAGGGGGGCCGAUGCACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUC
..............................(..(..................))..............................
.......(.(....................(..(..................))....................).).......
(.(....(.(....................(..(..................))....................).)....).)
(.(....(.(....................(..(.....(.....)......))....................).)....).)
(.(....(.(....................(..((.(..(.....)..))..))....................).)....).)
(.(....(.(....................(..((.(.((.....)).))..))....................).)....).)
(.(....(.(...........(.(......(..((.(.((.....)).))..))......).)...........).)....).)
(.(....(.(...........(.(.(....(..((.(.((.....)).))..))....).).)...........).)....).)
(.(....(.(.......(.(.(.(.(....(..((.(.((.....)).))..))....).).).).).......).)....).)
(.(....(.(.......(.(.(.(.(.(.((..((.(.((.....)).))..))).).).).).).).......).)....).)
>AAYZ01088765.1/13723-13805
UGUGCAGUGGGAAGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCUCUACUGUGUC
.............................(..(..................))..............................
.......(.(...................(..(..................))....................).).......
(.(....(.(...................(..(..................))....................).)....).)
(.(....(.(...................(..(.....(.....)......))....................).)....).)
(.(....(.(...................(..((.(..(.....)..))..))....................).)....).)
(.(....(.(...................(..((.(.((.....)).))..))....................).)....).)
(.(....(.(..........(.(......(..((.(.((.....)).))..))......).)...........).)....).)
(.(....(.(..........(.(.(....(..((.(.((.....)).))..))....).).)...........).)....).)
(.(....(.(......(.(.(.(.(....(..((.(.((.....)).))..))....).).).).).......).)....).)
(.(....(.(......(.(.(.(.(.(.((..((.(.((.....)).))..))).).).).).).).......).)....).)
>AAFR03062124.1/28552-28469
UGUGCAGCAGGAAGGGGGGCCGUUACACUGUCAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUGCUGUGGC
..............................(..(..................))..............................
..(.(.........................(..(..................)).........................).)..
....(.(.....(.(...............(..(..................))...............).).....).)....
....(.(.....(.(...............(..(.....(.....)......))...............).).....).)....
....(.(.....(.(...............(..((.(..(.....)..))..))...............).).....).)....
....(.(.....(.(...............(..((.(.((.....)).))..))...............).).....).)....
....(.(.....(.(......(.(......(..((.(.((.....)).))..))......).)......).).....).)....
....(.(.....(.(......(.(.(....(..((.(.((.....)).))..))....).).)......).).....).)....
....(.(.....(.(..(.(.(.(.(....(..((.(.((.....)).))..))....).).).))...).).....).)....
....(.(.....(.(..(.(.(.(.(.(.((..((.(.((.....)).))..))).).).).).))...).).....).)....
>AAPN01083252.1/12750-12833
UGGACAGCCGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUACCAGGUCUCACAGUGAACCGGUCUCUUUCCCGACUGGAUC
..............................(..(..................))..............................
............(.(...............(..(..................))...............).)............
....(.(.....(.(...............(..(..................))...............).).....).)....
....(.(.....(.(...............(..(.....(.....)......))...............).).....).)....
....(.(.....(.(...............(..((.(..(.....)..))..))...............).).....).)....
....(.(.....(.(...............(..((.(.((.....)).))..))...............).).....).)....
....(.(.....(.(......(.(......(..((.(.((.....)).))..))......).)......).).....).)....
....(.(.....(.(......(.(.(....(..((.(.((.....)).))..))....).).)......).).....).)....
....(.(.....(.(..(.(.(.(.(....(..((.(.((.....)).))..))....).).).))...).).....).)....
....(.(.....(.(..(.(.(.(.(.(.((..((.(.((.....)).))..))).).).).).))...).).....).)....
>AADN03002591.1/50849-50766
UGUCCAGCUGGAAGGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGUGUC
..............................(..(..................))..............................
............(.(...............(..(..................))...............).)............
....(.(.....(.(...............(..(..................))...............).).....).)....
....(.(.....(.(...............(..(.....(.....)......))...............).).....).)....
....(.(.....(.(...............(..((.(..(.....)..))..))...............).).....).)....
....(.(.....(.(...............(..((.(.((.....)).))..))...............).).....).)....
....(.(.....(.(......(.(......(..((.(.((.....)).))..))......).)......).).....).)....
....(.(.....(.(......(.(.(....(..((.(.((.....)).))..))....).).)......).).....).)....
....(.(.....(.(..(.(.(.(.(....(..((.(.((.....)).))..))....).).).))...).).....).)....
>BAAF04005951.1/319-236
CAAGGGGCGGGACGCGGGGCCGGGACGCUGUCUGAGAGGCCGCUACGAAUCUCACAGUGAACCGGUCUCUUUUCCCGCCCCUCA
..............................(..(..................))..............................
............(.(...............(..(..................))...............).)............
.................(.(.....(.(..(..(..................))..).).....).).................
.................(.(.....(.(..(..(......(.....).....))..).).....).).................
.................(.(.....(.(..(..((.(...(.....).))..))..).).....).).................
.................(.(.....(.(..(..((.(.(.(.....))))..))..).).....).).................
>CAAE01014622.1/402657-402574
GGAGAGGCUGCAUACGGGGCCGGGACGCUGUUUGAGAGUCCACUAUGAAUCUCACAGUGAACCGGUCUCUUUUGCAGCCCCUUA
..............................(..(..................))..............................
(.(...........................(..(..................))..........................).).
.................(.(.....(.(..(..(..................))..).).....).).................
.................(.(.....(.(..(..(......(.....).....))..).).....).).................
.................(.(.....(.(..(..((.(...(.....).))..))..).).....).).................
.................(.(.....(.(..(..((.(.(.(.....))))..))..).).....).).................
>CU459063.8/87923-87839
GGAGUGCUGGGAGACGGGGCCGUGGCACUGUAUGAGAUUCAUGUAGGCUUUCUCACAGUGAACCGGUCUCUUUUUCCAGCCCUCA
..............................(..(..................).)..............................
.........(.(..................(..(..................).)..................).).........
.(.(.....(.(..................(..(...................))..................).).....).).
.(.(.....(.(..................(..(......(.....)......))..................).).....).).
.(.(.....(.(..................(..((.(...(.....)..))..))..................).).....).).
>CAAB02004088.1/15719-15636
AGAGAGCCUGGGUACGGGGCCGGGACGCUGUUUGAGAGUCCUCUAUGAAUCUCACAGUGAACCGGUCUCUUUUCCAGCCCCUCA
..............................(..(..................))..............................
..........(.(.................(..(..................)).................).)..........
.................(.(.....(.(..(..(..................))..).).....).).................
.................(.(.....(.(..(..(......(.....).....))..).).....).).................
>CAAK05043402.1/2817-2901
UCAGUAGUAGGACAGGGGGCCGUUUCUACUGUCAGAGAUGCUGCCACUCGUCUCACAGUGAACCGGUCUCUUUUCCUGCUAUUCA
...............................(..(..................))..............................
..(.(..........................(..(..................)).........................).)..
....(.(......(.(...............(..(..................))..............).)......).)....
>BAAF04002274.1/1102-1018
GUGGCAGUAGAGGAGGGGGCCGUUACACUGUCAGAGAUGUACUCUGAGGGUCUCACAGUGAACCGGUCUCUUUUCCUGCUGCUUC
..............................(..(..................).)..............................
..........(.(.................(..(..................).).................).)..........
....(.(....(.(................(..(...................))................).)....).)....
>AAPN01333292.1/110-29
UGAGCCGCUGGAUUCGGGGCCGAUACACGGUCUGAGGGGUUUACGAGUCUCACAGUGAACCGGUCUCUUUUUCAGUUGCUCC
..............................(..(..................))............................
.....(.(......................(..(..................))....................).).....
>AAVX01050759.1/9619-9536
GGAGCAGCUGGAGAGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCAGGGGCCAC
..............................(..(..................))..............................
...........(.(................(..(..................))................).)...........

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 U(NN(G)) < 0.001 16.5
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
2 (G()U) < 0.001 5.9
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
3 (R()U) < 0.001 3.51
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
4 (NNUAN) < 0.001 15
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
5 ((A)C)C < 0.001 8.32
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
6 A(G(A)) < 0.001 6.82
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
7 ((G)A)A < 0.001 2.35
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
8 G(G(C)) < 0.001 2.9
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
9 A(G(N)) 0.00203 1.67
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
10 C(U(R)) 0.00418 1.9
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 U(NN(G)) < 0.001 16.5
AADB02231623.1/453-371
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
UGUGCAGUGGAAGGGGGGCCAAUCCACUGUAGGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUCUCCCUACUGUGUC
.........1.........2.........3.........4.........5.........6.........7.........8...
12345678901234567890123456789012345678901234567890123456789012345678901234567890123
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).