D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

5.8S ribosomal RNA   (Rfam: RF00002)


Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented

(()()(Y)N)Y
G(A(U))

90.0
88.3

% of positive sequence with ORB






Deep neural network:

5-fold cross-validation: 98.5 %
(± 0.425 %)

Decision tree:

5-fold cross-validation: 80 %
(± 5.74 %)

D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 76.8 %
(± 5.96 %)
of X66325.1/2369-2523
X66325.1/2369-2523
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
(((((((((((((((.((((((((..(((((((((((..)))))))))))((((((((((..))))))))))))))))))))))....(.((((((((..)))))))))((((((((((((((....)))))))))))))).)))).))))))).
...................................................................................................1.......................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.....
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345

abstract shape: ((()())()())

Number of sequences
Structure ORBs (out of 60) (%)
1 (()()(Y)N)Y
47 78.3
>AF422961.1/176-329
AACUUUCAACAACGGAUCUCUUGGUUCUGGCAUCGAUGAAGAACGCAGCGAAAUGCGAUAAGUAAUGUGAAUUGCAGAAUUCAGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCGCCGGUAUUCCGGCGGGCAUGCCUGUUCGAGCGUCA
..........(.(........................................................................................)(........)(..........................).)............
>M63701.1/247-415
AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUCAAUUACCGAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCCUCAGAGUCAUCCCCGUGCAUGCCAUAUUUCUCAGUGUCG
.............((..................................................................................)(..........).(........................................).)..............
>AF306774.1/466-634
AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUUCAUUGCCCAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCUCUCGAGCCAUCCCCGUGCAUGCCACAUUUCUCAGUGUCG
.............((.................................................................................)(............)(........................................).)..............
>AF468917.1/611-763
AACUCGUAACGGUGGAUGUCUCGGCUCCUACAUCGAUGAAGAACGUAGCAAACUGCGAAACGUAAUGCGAAUUGCAGAACUCGUGAAUCAUCAAAUUUUUGAACGCAAGUGGCGCUCGCGGGUAACCCUGCGAGCAUGUCUGUUUGAGUGUCC
............((..............................................................................)(................)(........................).)..............
>AF307619.1/287-442
GACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
.............((.............................................................................)(...................)(......................).)................
>AF403508.1/235-389
AACUUUCAGCAGUGGAUGUCUAGGCUCGCACAUCGAUGAAGAACGCUGCGAACUGCGAUACGUAAUGCGAAUUGCAGGAUUCAGUGAGUCAUCGAAAUUUUGAACGCAUAUUGCACUUCCGGGUUAGUCCUGGGAGUAUGCCUGUAUCAGUGUCC
...............(.(.....................................................................................).(.......)(.....................).)................
>M21017.1/2722-2844
AACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGCAGUCCAUGCUG
..........((..............................................................)(.......)(...............................).)....
>AF196778.1/2-154
AACUUUAAGCAAUGGAUCACUUGGUUCUCGCAUCGAUGAAGAACGUAGCAAAUUGCGAAAAGUAAUGCGAUCUGCAACCUUUGCGAAUCAUCGAAUUCUCGAACGCAUCUUGCACCCUUUGGUCAUCCAAUGGGUACGUCUAGUUCAGUAUCU
.................((....................................................................................)(.......)(....................).)................
>AF158725.1/345-497
AUCUCUUAGCGGUGGAUCACUCGGCUCGAGCGUCGAUGAAGGACGGAGCUAGCUCCGAGAAGUAAUGUGAAUUGCAGGACACAUUGAGCAUCGAUAUUCUGAACGCGUAUUGCGGCCUCGGGUAAUCCUGGGGCCACGUCCGUCUCAGGGUCU
............((.............................................................................)(.................)(........................).)..............
>AF026388.1/2852-3006
AACUUUCAGCAAUGGAUGUCUUGGCUCACGCAUCGAUGAAGGACGCAGCGAAAUGCGAUACGCAUUGUGAAUUGCAGAUUUCAGUGAACCAUCAGAUUUCUGAACGCACAUGGCGCUGCUGGUAUUUUGCCCGCAGCACGUCUGUUUCAGUGUCU
.................((..........................................................................)(..................)(.....................).)................
>V01159.1/185-331
ACCGUUGGGCGAUGGAUUGCUUGGUGCCUGCUUCGACGAAGAGCGCAGUGAAACGCGAUAACUUUUGUGACUCGCACUCUCUGUGAUCAACGUCUCCUUGAACAUUAGUGCGGCCUUGCCUUCGGGCACUGGCCCCCUUGGGAUGCC
.......((...........................................................................................)(........)(.....................).)...........
>AF093014.1/662-809
CACUUUAAGUAAUGGAUGUCUUGGUUCUCAUAACGAUGAAGGACGCAGCAAAGUGCGAUAAGCAAUGUGAACUGCAUAAUUCUAUGAACAAUCAGAUCUCUCAACGCAAAUAGCAGUAAUUUACAUUACUAUAUUUAUAUCAGUGUCU
.............((....................................................................................)(............)(..............).)................
>X99212.1/685-824
AACCCUAGACAGGGGAUCACUUGGCUCAUGGGUCGAUGAAGACCGCAGCAAACUGCGCGUCGCCAUGUGAACUGCAGGACACAUGAUCAUUGACAUGUUGAACGCAUAUUGCGCCUUAUACAUUUGGUUCUCUUUAUAAU
...........................(..(...............................................................)(....)(...........).)........................
>AF158724.1/274-427
GACUCUUAACGGUGGAUCACUCGGCUCGCGAGUCGAUGAAGGACGCAGCCAAGUGCGAGAAGUAAUGUGAAUUGCAGAACACAUUGAACGUCGACCUUCUGAACGCGAAUUGCGGUCUCGGGUCAAUCCCGGGACCGCGUCUGCCUCAGGGUCG
...............(.(..................................................................................)(........)(.........................).)..............
>Y07978.1/48-201
AACUUUCAGCGACGGAUAUCUAGGCUCCCACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUCUUGCGACUUGCAGAACCCAGUGAAUCAUCAAACCUUCGAACGCACCUUGCGCUCUCGGGCAUUCCCGGGAGCAUGCUUGUCGGAGUGUCC
.................((...................................................................................)..(.......)(....................).)................
>AF169230.1/225-380
GACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACCUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAGGCCAUCCGGCCGAGGGCACGCCUGCCUGGGCGUCA
.............((.............................................................................)(...................)(......................).)................
>X80346.1/67-220
AACUUUCAGCGAUGGAUAUCUUGGCUCUCGCAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAAUUCAGUGAAUCAUCAAAACUUUGAACGCAAAUUGCGCUUCCGGGUAUCCCUGGGAGCAUGCCUGUAUGAGUGUCU
.........((.................................................................................)(.................)(........................).)..............
>X66325.1/2369-2523
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
..........((.......................................................................)....(...................)(..............................).)............
>X53538.1/2090-2241
GACUCUCAACGGUGGAUCACUCGGCUCGCGAGUCGAUGAAGGACGCAGCUAAGUGCGAGAAGUGGUGUGAAUUGCAGAACACAUUGAACGUCGACCUUCGAACGCGAAUGGCGGUCUCGGGUUAAUCCGGGACCACGUCUGCCUCAGGGUUG
..........((...............................................................................)(..................)(....................).)................
>X03680.1/3159-3308
UAGCUUCAGCGAUGGAUCGGUUGCAUCGAGUAUCGAUGAAGAACGCAGCUUGCUGCGUUACUUACCACGAAUUGCAGACGCUUAGAGUGGUGAAAUUUCGAACGCAUAGCACCAACUGGGCCUCCAGUUGGUACGUCUGGUUCAGGGUUG
......................((..............................................................................)(.....)(....................).)................
>X80212.2/2104-2256
AACUCUCAGCAACGGAUAUCUUGGCUCUUGCAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAGUGUGAAUUGCAGAAUUCCGCGAAUCAUCGAGUUUUUGAACGCAAGUUGCGCCCGAGGCUCGUCCGAGGGCAUUCCUGCCAGAGCGUCA
.............................(.(..............................................................)(........)(....................).)........................
>L25635.1/211-360
AAUUUUCAGCAAUGGAUGUCUUGGCUCGCGCAACGAUGAAGGACGCAGCGAACUGCGAAACGCAAUGUGGAAUUGCAGAAUUCAGUGAAUCAUCAGAUUUCUGAACGCAAUGCACCUGGGAUAUCUCCUGGUACGUCUGUUUCAGUGUCU
.(..(..........................................................................)(.......................)...(....................................).)..
>AF319429.1/172-325
AACUUUCAACAACGGAUCUCUUGGCUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUAAGUAAUGUGAAUUGCAGAAUUCAGUGAAUCAUCGAAUCUUUGAACGCACCUUGCGCUCCUUGGUAUUCCGAGGAGCAUGCCUGUUUGAGUGUCA
................((.....................................................................................).(.......)(....................).)................
>D10840.1/200-355
GACUCUCGGCAACGGAUAUCUCGGCUCUCACAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
.............((.............................................................................)(...................)(......................).)................
>Y07976.1/124-271
CACUUUCAGCAACGGAUGUCUCGGUUCCCAUAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAACGCAUCAGUAGUGAGUCAUCGAAACUUUGAACGCAACUUGCACUUCCCUUUGGGGAGUAUAUCUAUUGGAGUGUCU
.................((.........................................................)(.................................).(...............).)................
>U09322.1/209-362
AACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAUUGCGAUAAGUAUUGUGAAUUGCAGAUUUUCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGUCCUCUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCA
..........((........................................................................).(........................)(..........................).)............
>U35394.1/2008-2158
AACUUUUGACGAUGGAUCUCUCGGCUCUCUCAUCGAUGAAGAACGUAGUAGAAUGCGAUACAUAAUGUGAAUUGCAAAUCCUGUGAAUCAUUGAGUUUUUGAACGCACAUUGCACCGACAGUUUACUGUUGGUUUGUUUGUUUGAAUUGCU
..........((..............................................................................)(................)(..........................).)............
>L07796.1/2-156
AACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCCGAUACGUAAUAUGAAUUGCAGAUAUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCUCUGGUAUUCCGGAGGGCAUGCCUGUUUGAGCGUCG
..........((.........................................................................)..(......................).(..........................).)............
>U48228.1/7-166
CAAUCUUAACGAUGGAUGUCUUGGUUCCUAUAGCGAUGAAGGCCGCAGCAAAGUGCGAUAUGCAAUGAAAAAUGCAAUUACUGUGAAUCAUCAGAAUGCUGAAUGUAAACUAUACCAUAUUUACCCUUAUGGGCAAAUUAACGUGGUAUUCCUACAGAAA
..........((..............................................................................).(.................)(....................................).).........
>U58510.1/2022-2198
AACCCUAGUGAUGGAUGUCUAGGCUCCCGUAUCGAUGAAGAACGUAGCAGAAAGCGACAUGCGAUGAUACGCGCAUAGACCAGGAUUCCGCGGACUCGUGAAUCAUUGAAUCUUCGAACGCAUCUGGCGCUCAGCAGUGGAGCCGUAGCAGGCUGAGCAUGCCCUGGAGUAGUGACA
............((.................................................................................................)(.................................)(.............).).............
>X60210.1/1-148
ACCGUUAGGCGAUGGAUUGCUGGGUACCCGCUUCGACGAAGAGCGCAGUGAAACGCGAUAACGCUUGUGAUUCGCACUCUCUGUGAUCAACGUCACCUCGAACAUCGAUGCGGCCUUGCCUUCGGGCACUGGCCCCCCUGGUUUGCCU
.............((................................................................................)(............)(.......................).)...........
>M36008.1/959-1112
GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAGUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACCUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGGGUCG
......................((...............................................................................)(.......)(.....................).)................
>D16558.1/2710-2862
AACUUUCAGCGACGGAUGUCUUGGCUCCCACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUCUUGCGACUUGCAGAAUCCAGUGAAUCAUCAAAACUUUGAACGCAUCUGCGUUCCGGGAUAUGCCUGGGAGCAUGCUUGUCGGAGUGUCU
............((...............................................................................).(..........................)(............).)..............
>Y00055.1/4327-4494
AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUCUCGUUGAAGAACGCAGUAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUCAAUUACCGAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCUUUUGAGUCAUCCCCGUGCAUGCCAUAUUCUCAGUGUCG
.............((..................................................................................)(..........).(........................................).).............
>U13369.1/6624-6776
GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG
......................((...............................................................................)(......)(.....................).)................
>AF223066.1/5881-6030
GACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAAGCCACUAGGGCACGUCUGCCUGGGCGUCA
.............((.............................................................................)(...................)(................).)................
>X53361.2/1206-1368
ACCUGUUGUGGUGGAUGUCUUGGCCCAGGUUCUGAGGAAGGACACAGCAGCCUUGCGAUACGUUCGGUGAUACGCAGAGUCUUGUGAUCUGGACAAAGGAACAGCUUCGAACGCAACUGGCCAGCAAGGGGUUCCCCCCCGAGCUGCCUGUGCGCCAGUGUUG
..............((....................................................................................).(..............)(.............................).)............
>X54512.1/4422-4569
AACUUUCAACGGUGGAUAUCUAGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGCAAUGCGAAUUGCAGAACCGCGAGUCAUCAGAUCUUUGAACGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUUUCAGUGUGG
............((....................................................................................).(........)(....................).)..............
>AB021684.1/14108-14260
GACUCUCAGCAACGGAUAUCUUGGCUCCCGCAACGAUGAAGAACGCAGCGAAAUGCGAUAUCUAGUGUGAAUUGCAGAAUUCCGCGAAUCAUCGAGUUUUUGAACGCAUGUUGCGCCCGAGGCUUUGCCGAGGGCAUGUCUGCCUGAGCGUCA
..........((........................................................................)..(.......................)(.........................).)............
>X01533.1/5-152
AACUUUCAACGGUGGAUAUCUUGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAACCGCGAGUCAACAGAUCUUUGAAAGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUAUUAGUGUGG
.......(.(..................................................................................)(.......).(.................................).)........
>AF223571.1/210-358
AACCUUCAACGGUGGAUGUCUUGGCUCUCAUAUCGAUGAAGAACGCAGCAAAGUGCGAUAAGCAAUGCGAAUUGCAGACCGUGAGUCAUUAGAAUUUCGAAAGCAAUCUGCACCUCCGCCUAGCGAGAGGUAUGUCUGCUUCAGUGUUC
............((............................................................................)(................)(......................).)..............
>AF444327.1/152-305
AACUUUCAACAACGGAUCUCUUGGCUUCCACAUCGAUGAAGAACGCAGCGAAAUGCGAUAAGUAAUGUGAAUUGCAGAAUUCAGUGAAUCAUCGAGUCUUUGAACGCAACUUGCGCCCUUUGGUAUUCCGAAGGGCAUGCCUGUUUGAGAGUCA
.......((.....................................................................)(.......................)....(..................................).)........
>U10409.1/2025-2178
AACUUUCAGCAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAUUGCGAUAAGUAAUGUGAAUUGCAGAUUUUCGUGAAUCAUCGAAUCUUUGAACGCAUAUUGCGCUCUAUAGUAUUCUAUAGAGCAUGCCUGUUUGAGCGUCA
..........((........................................................................).(........................)(..........................).)............
>U21939.1/68-218
CAGUCUUAACGAUGGAUGUCUUGGUUCCUACAGCGAUGAAGGCCGCAGCAAAAUGCGAUACGCAAUGAAAAUUGCAGUGACUGUGAAUCAUCAGAAUGCUGAAUGUAAACUACACCAAUUCCUUCGGGGAAUAGUGGUACUCCUACAGAAA
............((..............................................................................)(..................)(.......................).)...........
>AY029385.1/986-1138
AACUCGUGACGGAGGAUAUCUUGGCUCCCACAUCGAUGAAGAACGCAGCAAAAUGCGAUACGUAGUGUGAAUUGCAGAACAUGUGAAUCAUCGAAUUUUUGAACGCAAGUGGCGCUCGCGGGCAAUCCUGCGAGCAUGUCUGUUUGAGUGUCC
............(.(...............................................................................)(..............)(........................).)..............
>Y07974.1/75-229
AACUUUCAGCAACGGAUGUCUUGGCUCCCACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAAUUCCGCGAGUCAUCAAACCUUUGAACGCACCUUGCGCUUUCGGGAUAUGCCCGUUAGCAUGUUUGUUGGAGUGUCU
.............((....................................................................................).(...........)(.....................).)................
>Y11511.1/115-268
AACUUUUAGCAAUGGAUGUCUUGGGUCACACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAACUUCGUGAAUCAUCAAAAUUUUGAACGCACAUUGCGCUACUGAGUAAUCUCAGUAGCAUGCUUAUCUGAGUGUCU
.............((.............................................................................).(................)(........................).)..............
2 (()()(Y)N)Y
G(A(U))
31 51.7
>V01159.1/185-331
ACCGUUGGGCGAUGGAUUGCUUGGUGCCUGCUUCGACGAAGAGCGCAGUGAAACGCGAUAACUUUUGUGACUCGCACUCUCUGUGAUCAACGUCUCCUUGAACAUUAGUGCGGCCUUGCCUUCGGGCACUGGCCCCCUUGGGAUGCC
.......((.....(.(.......................................................................))..........)(........)(.....................).)...........
>X53538.1/2090-2241
GACUCUCAACGGUGGAUCACUCGGCUCGCGAGUCGAUGAAGGACGCAGCUAAGUGCGAGAAGUGGUGUGAAUUGCAGAACACAUUGAACGUCGACCUUCGAACGCGAAUGGCGGUCUCGGGUUAAUCCGGGACCACGUCUGCCUCAGGGUUG
..........((..(.(.....................................................................))...)(..................)(....................).)................
>L07796.1/2-156
AACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCCGAUACGUAAUAUGAAUUGCAGAUAUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCUCUGGUAUUCCGGAGGGCAUGCCUGUUUGAGCGUCG
..........((......................(.(.....)).........................................)..(......................).(..........................).)............
>Y07976.1/124-271
CACUUUCAGCAACGGAUGUCUCGGUUCCCAUAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAACGCAUCAGUAGUGAGUCAUCGAAACUUUGAACGCAACUUGCACUUCCCUUUGGGGAGUAUAUCUAUUGGAGUGUCU
.................((...............(.(......................))...............)(.................................).(...............).)................
>AF444327.1/152-305
AACUUUCAACAACGGAUCUCUUGGCUUCCACAUCGAUGAAGAACGCAGCGAAAUGCGAUAAGUAAUGUGAAUUGCAGAAUUCAGUGAAUCAUCGAGUCUUUGAACGCAACUUGCGCCCUUUGGUAUUCCGAAGGGCAUGCCUGUUUGAGAGUCA
.......((.....(.(....................................................)).......)(.......................)....(..................................).)........
>Y11511.1/115-268
AACUUUUAGCAAUGGAUGUCUUGGGUCACACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAACUUCGUGAAUCAUCAAAAUUUUGAACGCACAUUGCGCUACUGAGUAAUCUCAGUAGCAUGCUUAUCUGAGUGUCU
.......((.....(.(............................................................................))..................)(....................)(......).)........
>AF026388.1/2852-3006
AACUUUCAGCAAUGGAUGUCUUGGCUCACGCAUCGAUGAAGGACGCAGCGAAAUGCGAUACGCAUUGUGAAUUGCAGAUUUCAGUGAACCAUCAGAUUUCUGAACGCACAUGGCGCUGCUGGUAUUUUGCCCGCAGCACGUCUGUUUCAGUGUCU
.......((.........................(.(........................................................))..................)(.....................)(......).)........
>X80346.1/67-220
AACUUUCAGCGAUGGAUAUCUUGGCUCUCGCAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAAUUCAGUGAAUCAUCAAAACUUUGAACGCAAAUUGCGCUUCCGGGUAUCCCUGGGAGCAUGCCUGUAUGAGUGUCU
.........((.......................(.(...............................))......................)(.................)(........................).)..............
>X01533.1/5-152
AACUUUCAACGGUGGAUAUCUUGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAACCGCGAGUCAACAGAUCUUUGAAAGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUAUUAGUGUGG
.......(.(....(.(.....................................................................))....)(.......).(.................................).)........
>X99212.1/685-824
AACCCUAGACAGGGGAUCACUUGGCUCAUGGGUCGAUGAAGACCGCAGCAAACUGCGCGUCGCCAUGUGAACUGCAGGACACAUGAUCAUUGACAUGUUGAACGCAUAUUGCGCCUUAUACAUUUGGUUCUCUUUAUAAU
.............................((...(.(...................................................).)...).(.....)(.......).)..........................
>X03680.1/3159-3308
UAGCUUCAGCGAUGGAUCGGUUGCAUCGAGUAUCGAUGAAGAACGCAGCUUGCUGCGUUACUUACCACGAAUUGCAGACGCUUAGAGUGGUGAAAUUUCGAACGCAUAGCACCAACUGGGCCUCCAGUUGGUACGUCUGGUUCAGGGUUG
......................(.(.........(.(.............................)).................................).(.....)(....................).)................
>M21017.1/2722-2844
AACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGCAGUCCAUGCUG
..........((..(.(....................................................))...)(.......)(...............................).)....
>Y07978.1/48-201
AACUUUCAGCGACGGAUAUCUAGGCUCCCACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUCUUGCGACUUGCAGAACCCAGUGAAUCAUCAAACCUUCGAACGCACCUUGCGCUCUCGGGCAUUCCCGGGAGCAUGCUUGUCGGAGUGUCC
.................((...............(.(........................................................)).......)..(.......)(....................).)................
>U35394.1/2008-2158
AACUUUUGACGAUGGAUCUCUCGGCUCUCUCAUCGAUGAAGAACGUAGUAGAAUGCGAUACAUAAUGUGAAUUGCAAAUCCUGUGAAUCAUUGAGUUUUUGAACGCACAUUGCACCGACAGUUUACUGUUGGUUUGUUUGUUUGAAUUGCU
..........((..(.(....................................................................).)..)(................)(..........................).)............
>AF403508.1/235-389
AACUUUCAGCAGUGGAUGUCUAGGCUCGCACAUCGAUGAAGAACGCUGCGAACUGCGAUACGUAAUGCGAAUUGCAGGAUUCAGUGAGUCAUCGAAAUUUUGAACGCAUAUUGCACUUCCGGGUUAGUCCUGGGAGUAUGCCUGUAUCAGUGUCC
...............((.................(.(........................................................)).........)(.......)(.....................).)................
>Y07974.1/75-229
AACUUUCAGCAACGGAUGUCUUGGCUCCCACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAAUUCCGCGAGUCAUCAAACCUUUGAACGCACCUUGCGCUUUCGGGAUAUGCCCGUUAGCAUGUUUGUUGGAGUGUCU
...........((.....................(.(........................................................))......)(........)(.........................).)..............
>U13369.1/6624-6776
GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG
.......((.....(.(.................................).).........................................)...(......)(...................................).)........
>AF169230.1/225-380
GACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACCUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAGGCCAUCCGGCCGAGGGCACGCCUGCCUGGGCGUCA
..........((..(.(............................................................)...)..).(........................)(............................).)............
>U09322.1/209-362
AACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAUUGCGAUAAGUAUUGUGAAUUGCAGAUUUUCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGUCCUCUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCA
..........((..(.(.................................).)...............................).(........................)(..........................).)............
>U10409.1/2025-2178
AACUUUCAGCAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAUUGCGAUAAGUAAUGUGAAUUGCAGAUUUUCGUGAAUCAUCGAAUCUUUGAACGCAUAUUGCGCUCUAUAGUAUUCUAUAGAGCAUGCCUGUUUGAGCGUCA
..........((..(.(....................................................).)............).(........................)(..........................).)............
>U58510.1/2022-2198
AACCCUAGUGAUGGAUGUCUAGGCUCCCGUAUCGAUGAAGAACGUAGCAGAAAGCGACAUGCGAUGAUACGCGCAUAGACCAGGAUUCCGCGGACUCGUGAAUCAUUGAAUCUUCGAACGCAUCUGGCGCUCAGCAGUGGAGCCGUAGCAGGCUGAGCAUGCCCUGGAGUAGUGACA
.......((....(.(............................................................................................).)....)(.............................)(.............).).............
>X60210.1/1-148
ACCGUUAGGCGAUGGAUUGCUGGGUACCCGCUUCGACGAAGAGCGCAGUGAAACGCGAUAACGCUUGUGAUUCGCACUCUCUGUGAUCAACGUCACCUCGAACAUCGAUGCGGCCUUGCCUUCGGGCACUGGCCCCCCUGGUUUGCCU
...........(.((.(.............................................................................)))(.........)(...........................).).........
>X66325.1/2369-2523
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
..........((..(.(..............................................................))..)....(...................)(..............................).)............
>U48228.1/7-166
CAAUCUUAACGAUGGAUGUCUUGGUUCCUAUAGCGAUGAAGGCCGCAGCAAAGUGCGAUAUGCAAUGAAAAAUGCAAUUACUGUGAAUCAUCAGAAUGCUGAAUGUAAACUAUACCAUAUUUACCCUUAUGGGCAAAUUAACGUGGUAUUCCUACAGAAA
..........((..(.(....................................................................))...).(.................)(....................................).).........
>X54512.1/4422-4569
AACUUUCAACGGUGGAUAUCUAGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGCAAUGCGAAUUGCAGAACCGCGAGUCAUCAGAUCUUUGAACGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUUUCAGUGUGG
.......((.....(.(....................................................................))....)(.........)(.................................).)........
>D10840.1/200-355
GACUCUCGGCAACGGAUAUCUCGGCUCUCACAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
..........((..(.(..............................................................).)..).(........................)(............................).)............
>AF307619.1/287-442
GACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
...........((.(.(...............................................................))...................)(........)(..........................).)..............
>L25635.1/211-360
AAUUUUCAGCAAUGGAUGUCUUGGCUCGCGCAACGAUGAAGGACGCAGCGAACUGCGAAACGCAAUGUGGAAUUGCAGAAUUCAGUGAAUCAUCAGAUUUCUGAACGCAAUGCACCUGGGAUAUCUCCUGGUACGUCUGUUUCAGUGUCU
.(..(.........(.(...........................)..)...............................)(.......................)...(....................................).)..
>AF223066.1/5881-6030
GACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAAGCCACUAGGGCACGUCUGCCUGGGCGUCA
...........((.(.(............................................................)...)...................)(........)(....................).)..............
>AF158725.1/345-497
AUCUCUUAGCGGUGGAUCACUCGGCUCGAGCGUCGAUGAAGGACGGAGCUAGCUCCGAGAAGUAAUGUGAAUUGCAGGACACAUUGAGCAUCGAUAUUCUGAACGCGUAUUGCGGCCUCGGGUAAUCCUGGGGCCACGUCCGUCUCAGGGUCU
............(((.(.....................................................................))...)(.................)(........................).)..............
>U21939.1/68-218
CAGUCUUAACGAUGGAUGUCUUGGUUCCUACAGCGAUGAAGGCCGCAGCAAAAUGCGAUACGCAAUGAAAAUUGCAGUGACUGUGAAUCAUCAGAAUGCUGAAUGUAAACUACACCAAUUCCUUCGGGGAAUAGUGGUACUCCUACAGAAA
............(((.(........................................................................)).)(..................)(.......................).)...........

>AF307619.1/287-442
GACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
.............((.............................................................................)(...................)(......................).)................
...........((.(.(...............................................................))...................)(........)(..........................).)..............
>AF403508.1/235-389
AACUUUCAGCAGUGGAUGUCUAGGCUCGCACAUCGAUGAAGAACGCUGCGAACUGCGAUACGUAAUGCGAAUUGCAGGAUUCAGUGAGUCAUCGAAAUUUUGAACGCAUAUUGCACUUCCGGGUUAGUCCUGGGAGUAUGCCUGUAUCAGUGUCC
...............(.(.....................................................................................).(.......)(.....................).)................
...............((.................(.(........................................................)).........)(.......)(.....................).)................
>M21017.1/2722-2844
AACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGCAGUCCAUGCUG
..........((..............................................................)(.......)(...............................).)....
..........((..(.(....................................................))...)(.......)(...............................).)....
>AF158725.1/345-497
AUCUCUUAGCGGUGGAUCACUCGGCUCGAGCGUCGAUGAAGGACGGAGCUAGCUCCGAGAAGUAAUGUGAAUUGCAGGACACAUUGAGCAUCGAUAUUCUGAACGCGUAUUGCGGCCUCGGGUAAUCCUGGGGCCACGUCCGUCUCAGGGUCU
............((.............................................................................)(.................)(........................).)..............
............(((.(.....................................................................))...)(.................)(........................).)..............
>AF026388.1/2852-3006
AACUUUCAGCAAUGGAUGUCUUGGCUCACGCAUCGAUGAAGGACGCAGCGAAAUGCGAUACGCAUUGUGAAUUGCAGAUUUCAGUGAACCAUCAGAUUUCUGAACGCACAUGGCGCUGCUGGUAUUUUGCCCGCAGCACGUCUGUUUCAGUGUCU
.................((..........................................................................)(..................)(.....................).)................
.......((.........................(.(........................................................))..................)(.....................)(......).)........
>V01159.1/185-331
ACCGUUGGGCGAUGGAUUGCUUGGUGCCUGCUUCGACGAAGAGCGCAGUGAAACGCGAUAACUUUUGUGACUCGCACUCUCUGUGAUCAACGUCUCCUUGAACAUUAGUGCGGCCUUGCCUUCGGGCACUGGCCCCCUUGGGAUGCC
.......((...........................................................................................)(........)(.....................).)...........
.......((.....(.(.......................................................................))..........)(........)(.....................).)...........
>X99212.1/685-824
AACCCUAGACAGGGGAUCACUUGGCUCAUGGGUCGAUGAAGACCGCAGCAAACUGCGCGUCGCCAUGUGAACUGCAGGACACAUGAUCAUUGACAUGUUGAACGCAUAUUGCGCCUUAUACAUUUGGUUCUCUUUAUAAU
...........................(..(...............................................................)(....)(...........).)........................
.............................((...(.(...................................................).)...).(.....)(.......).)..........................
>Y07978.1/48-201
AACUUUCAGCGACGGAUAUCUAGGCUCCCACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUCUUGCGACUUGCAGAACCCAGUGAAUCAUCAAACCUUCGAACGCACCUUGCGCUCUCGGGCAUUCCCGGGAGCAUGCUUGUCGGAGUGUCC
.................((...................................................................................)..(.......)(....................).)................
.................((...............(.(........................................................)).......)..(.......)(....................).)................
>AF169230.1/225-380
GACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACCUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAGGCCAUCCGGCCGAGGGCACGCCUGCCUGGGCGUCA
.............((.............................................................................)(...................)(......................).)................
..........((..(.(............................................................)...)..).(........................)(............................).)............
>X80346.1/67-220
AACUUUCAGCGAUGGAUAUCUUGGCUCUCGCAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAAUUCAGUGAAUCAUCAAAACUUUGAACGCAAAUUGCGCUUCCGGGUAUCCCUGGGAGCAUGCCUGUAUGAGUGUCU
.........((.................................................................................)(.................)(........................).)..............
.........((.......................(.(...............................))......................)(.................)(........................).)..............
>X66325.1/2369-2523
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
..........((.......................................................................)....(...................)(..............................).)............
..........((..(.(..............................................................))..)....(...................)(..............................).)............
>X53538.1/2090-2241
GACUCUCAACGGUGGAUCACUCGGCUCGCGAGUCGAUGAAGGACGCAGCUAAGUGCGAGAAGUGGUGUGAAUUGCAGAACACAUUGAACGUCGACCUUCGAACGCGAAUGGCGGUCUCGGGUUAAUCCGGGACCACGUCUGCCUCAGGGUUG
..........((...............................................................................)(..................)(....................).)................
..........((..(.(.....................................................................))...)(..................)(....................).)................
>X03680.1/3159-3308
UAGCUUCAGCGAUGGAUCGGUUGCAUCGAGUAUCGAUGAAGAACGCAGCUUGCUGCGUUACUUACCACGAAUUGCAGACGCUUAGAGUGGUGAAAUUUCGAACGCAUAGCACCAACUGGGCCUCCAGUUGGUACGUCUGGUUCAGGGUUG
......................((..............................................................................)(.....)(....................).)................
......................(.(.........(.(.............................)).................................).(.....)(....................).)................
>L25635.1/211-360
AAUUUUCAGCAAUGGAUGUCUUGGCUCGCGCAACGAUGAAGGACGCAGCGAACUGCGAAACGCAAUGUGGAAUUGCAGAAUUCAGUGAAUCAUCAGAUUUCUGAACGCAAUGCACCUGGGAUAUCUCCUGGUACGUCUGUUUCAGUGUCU
.(..(..........................................................................)(.......................)...(....................................).)..
.(..(.........(.(...........................)..)...............................)(.......................)...(....................................).)..
>D10840.1/200-355
GACUCUCGGCAACGGAUAUCUCGGCUCUCACAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
.............((.............................................................................)(...................)(......................).)................
..........((..(.(..............................................................).)..).(........................)(............................).)............
>Y07976.1/124-271
CACUUUCAGCAACGGAUGUCUCGGUUCCCAUAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAACGCAUCAGUAGUGAGUCAUCGAAACUUUGAACGCAACUUGCACUUCCCUUUGGGGAGUAUAUCUAUUGGAGUGUCU
.................((.........................................................)(.................................).(...............).)................
.................((...............(.(......................))...............)(.................................).(...............).)................
>U09322.1/209-362
AACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAUUGCGAUAAGUAUUGUGAAUUGCAGAUUUUCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGUCCUCUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCA
..........((........................................................................).(........................)(..........................).)............
..........((..(.(.................................).)...............................).(........................)(..........................).)............
>U35394.1/2008-2158
AACUUUUGACGAUGGAUCUCUCGGCUCUCUCAUCGAUGAAGAACGUAGUAGAAUGCGAUACAUAAUGUGAAUUGCAAAUCCUGUGAAUCAUUGAGUUUUUGAACGCACAUUGCACCGACAGUUUACUGUUGGUUUGUUUGUUUGAAUUGCU
..........((..............................................................................)(................)(..........................).)............
..........((..(.(....................................................................).)..)(................)(..........................).)............
>L07796.1/2-156
AACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCCGAUACGUAAUAUGAAUUGCAGAUAUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCUCUGGUAUUCCGGAGGGCAUGCCUGUUUGAGCGUCG
..........((.........................................................................)..(......................).(..........................).)............
..........((......................(.(.....)).........................................)..(......................).(..........................).)............
>U48228.1/7-166
CAAUCUUAACGAUGGAUGUCUUGGUUCCUAUAGCGAUGAAGGCCGCAGCAAAGUGCGAUAUGCAAUGAAAAAUGCAAUUACUGUGAAUCAUCAGAAUGCUGAAUGUAAACUAUACCAUAUUUACCCUUAUGGGCAAAUUAACGUGGUAUUCCUACAGAAA
..........((..............................................................................).(.................)(....................................).).........
..........((..(.(....................................................................))...).(.................)(....................................).).........
>U58510.1/2022-2198
AACCCUAGUGAUGGAUGUCUAGGCUCCCGUAUCGAUGAAGAACGUAGCAGAAAGCGACAUGCGAUGAUACGCGCAUAGACCAGGAUUCCGCGGACUCGUGAAUCAUUGAAUCUUCGAACGCAUCUGGCGCUCAGCAGUGGAGCCGUAGCAGGCUGAGCAUGCCCUGGAGUAGUGACA
............((.................................................................................................)(.................................)(.............).).............
.......((....(.(............................................................................................).)....)(.............................)(.............).).............
>X60210.1/1-148
ACCGUUAGGCGAUGGAUUGCUGGGUACCCGCUUCGACGAAGAGCGCAGUGAAACGCGAUAACGCUUGUGAUUCGCACUCUCUGUGAUCAACGUCACCUCGAACAUCGAUGCGGCCUUGCCUUCGGGCACUGGCCCCCCUGGUUUGCCU
.............((................................................................................)(............)(.......................).)...........
...........(.((.(.............................................................................)))(.........)(...........................).).........
>U13369.1/6624-6776
GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCG
......................((...............................................................................)(......)(.....................).)................
.......((.....(.(.................................).).........................................)...(......)(...................................).)........
>AF223066.1/5881-6030
GACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAAGCCACUAGGGCACGUCUGCCUGGGCGUCA
.............((.............................................................................)(...................)(................).)................
...........((.(.(............................................................)...)...................)(........)(....................).)..............
>X54512.1/4422-4569
AACUUUCAACGGUGGAUAUCUAGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGCAAUGCGAAUUGCAGAACCGCGAGUCAUCAGAUCUUUGAACGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUUUCAGUGUGG
............((....................................................................................).(........)(....................).)..............
.......((.....(.(....................................................................))....)(.........)(.................................).)........
>X01533.1/5-152
AACUUUCAACGGUGGAUAUCUUGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAACCGCGAGUCAACAGAUCUUUGAAAGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUAUUAGUGUGG
.......(.(..................................................................................)(.......).(.................................).)........
.......(.(....(.(.....................................................................))....)(.......).(.................................).)........
>AF444327.1/152-305
AACUUUCAACAACGGAUCUCUUGGCUUCCACAUCGAUGAAGAACGCAGCGAAAUGCGAUAAGUAAUGUGAAUUGCAGAAUUCAGUGAAUCAUCGAGUCUUUGAACGCAACUUGCGCCCUUUGGUAUUCCGAAGGGCAUGCCUGUUUGAGAGUCA
.......((.....................................................................)(.......................)....(..................................).)........
.......((.....(.(....................................................)).......)(.......................)....(..................................).)........
>U10409.1/2025-2178
AACUUUCAGCAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAUUGCGAUAAGUAAUGUGAAUUGCAGAUUUUCGUGAAUCAUCGAAUCUUUGAACGCAUAUUGCGCUCUAUAGUAUUCUAUAGAGCAUGCCUGUUUGAGCGUCA
..........((........................................................................).(........................)(..........................).)............
..........((..(.(....................................................).)............).(........................)(..........................).)............
>U21939.1/68-218
CAGUCUUAACGAUGGAUGUCUUGGUUCCUACAGCGAUGAAGGCCGCAGCAAAAUGCGAUACGCAAUGAAAAUUGCAGUGACUGUGAAUCAUCAGAAUGCUGAAUGUAAACUACACCAAUUCCUUCGGGGAAUAGUGGUACUCCUACAGAAA
............((..............................................................................)(..................)(.......................).)...........
............(((.(........................................................................)).)(..................)(.......................).)...........
>Y07974.1/75-229
AACUUUCAGCAACGGAUGUCUUGGCUCCCACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAAUUCCGCGAGUCAUCAAACCUUUGAACGCACCUUGCGCUUUCGGGAUAUGCCCGUUAGCAUGUUUGUUGGAGUGUCU
.............((....................................................................................).(...........)(.....................).)................
...........((.....................(.(........................................................))......)(........)(.........................).)..............
>Y11511.1/115-268
AACUUUUAGCAAUGGAUGUCUUGGGUCACACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGCGAAUUGCAGAACUUCGUGAAUCAUCAAAAUUUUGAACGCACAUUGCGCUACUGAGUAAUCUCAGUAGCAUGCUUAUCUGAGUGUCU
.............((.............................................................................).(................)(........................).)..............
.......((.....(.(............................................................................))..................)(....................)(......).)........
>AF422961.1/176-329
AACUUUCAACAACGGAUCUCUUGGUUCUGGCAUCGAUGAAGAACGCAGCGAAAUGCGAUAAGUAAUGUGAAUUGCAGAAUUCAGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCGCCGGUAUUCCGGCGGGCAUGCCUGUUCGAGCGUCA
..........(.(........................................................................................)(........)(..........................).)............
>M63701.1/247-415
AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUCAAUUACCGAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCCUCAGAGUCAUCCCCGUGCAUGCCAUAUUUCUCAGUGUCG
.............((..................................................................................)(..........).(........................................).)..............
>AF306774.1/466-634
AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUUCAUUGCCCAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCUCUCGAGCCAUCCCCGUGCAUGCCACAUUUCUCAGUGUCG
.............((.................................................................................)(............)(........................................).)..............
>AF468917.1/611-763
AACUCGUAACGGUGGAUGUCUCGGCUCCUACAUCGAUGAAGAACGUAGCAAACUGCGAAACGUAAUGCGAAUUGCAGAACUCGUGAAUCAUCAAAUUUUUGAACGCAAGUGGCGCUCGCGGGUAACCCUGCGAGCAUGUCUGUUUGAGUGUCC
............((..............................................................................)(................)(........................).)..............
>AF196778.1/2-154
AACUUUAAGCAAUGGAUCACUUGGUUCUCGCAUCGAUGAAGAACGUAGCAAAUUGCGAAAAGUAAUGCGAUCUGCAACCUUUGCGAAUCAUCGAAUUCUCGAACGCAUCUUGCACCCUUUGGUCAUCCAAUGGGUACGUCUAGUUCAGUAUCU
.................((....................................................................................)(.......)(....................).)................
>AF093014.1/662-809
CACUUUAAGUAAUGGAUGUCUUGGUUCUCAUAACGAUGAAGGACGCAGCAAAGUGCGAUAAGCAAUGUGAACUGCAUAAUUCUAUGAACAAUCAGAUCUCUCAACGCAAAUAGCAGUAAUUUACAUUACUAUAUUUAUAUCAGUGUCU
.............((....................................................................................)(............)(..............).)................
>AF158724.1/274-427
GACUCUUAACGGUGGAUCACUCGGCUCGCGAGUCGAUGAAGGACGCAGCCAAGUGCGAGAAGUAAUGUGAAUUGCAGAACACAUUGAACGUCGACCUUCUGAACGCGAAUUGCGGUCUCGGGUCAAUCCCGGGACCGCGUCUGCCUCAGGGUCG
...............(.(..................................................................................)(........)(.........................).)..............
>X80212.2/2104-2256
AACUCUCAGCAACGGAUAUCUUGGCUCUUGCAACGAUGAAGAACGCAGCGAAAUGCGAUACGUAGUGUGAAUUGCAGAAUUCCGCGAAUCAUCGAGUUUUUGAACGCAAGUUGCGCCCGAGGCUCGUCCGAGGGCAUUCCUGCCAGAGCGUCA
.............................(.(..............................................................)(........)(....................).)........................
>AF319429.1/172-325
AACUUUCAACAACGGAUCUCUUGGCUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUAAGUAAUGUGAAUUGCAGAAUUCAGUGAAUCAUCGAAUCUUUGAACGCACCUUGCGCUCCUUGGUAUUCCGAGGAGCAUGCCUGUUUGAGUGUCA
................((.....................................................................................).(.......)(....................).)................
>M36008.1/959-1112
GACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAGUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACCUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGGGUCG
......................((...............................................................................)(.......)(.....................).)................
>D16558.1/2710-2862
AACUUUCAGCGACGGAUGUCUUGGCUCCCACAACGAUGAAGAACGCAGCGAAAUGCGAUACGUCUUGCGACUUGCAGAAUCCAGUGAAUCAUCAAAACUUUGAACGCAUCUGCGUUCCGGGAUAUGCCUGGGAGCAUGCUUGUCGGAGUGUCU
............((...............................................................................).(..........................)(............).)..............
>Y00055.1/4327-4494
AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUCUCGUUGAAGAACGCAGUAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUCAAUUACCGAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCUUUUGAGUCAUCCCCGUGCAUGCCAUAUUCUCAGUGUCG
.............((..................................................................................)(..........).(........................................).).............
>X53361.2/1206-1368
ACCUGUUGUGGUGGAUGUCUUGGCCCAGGUUCUGAGGAAGGACACAGCAGCCUUGCGAUACGUUCGGUGAUACGCAGAGUCUUGUGAUCUGGACAAAGGAACAGCUUCGAACGCAACUGGCCAGCAAGGGGUUCCCCCCCGAGCUGCCUGUGCGCCAGUGUUG
..............((....................................................................................).(..............)(.............................).)............
>AB021684.1/14108-14260
GACUCUCAGCAACGGAUAUCUUGGCUCCCGCAACGAUGAAGAACGCAGCGAAAUGCGAUAUCUAGUGUGAAUUGCAGAAUUCCGCGAAUCAUCGAGUUUUUGAACGCAUGUUGCGCCCGAGGCUUUGCCGAGGGCAUGUCUGCCUGAGCGUCA
..........((........................................................................)..(.......................)(.........................).)............
>AF223571.1/210-358
AACCUUCAACGGUGGAUGUCUUGGCUCUCAUAUCGAUGAAGAACGCAGCAAAGUGCGAUAAGCAAUGCGAAUUGCAGACCGUGAGUCAUUAGAAUUUCGAAAGCAAUCUGCACCUCCGCCUAGCGAGAGGUAUGUCUGCUUCAGUGUUC
............((............................................................................)(................)(......................).)..............
>AY029385.1/986-1138
AACUCGUGACGGAGGAUAUCUUGGCUCCCACAUCGAUGAAGAACGCAGCAAAAUGCGAUACGUAGUGUGAAUUGCAGAACAUGUGAAUCAUCGAAUUUUUGAACGCAAGUGGCGCUCGCGGGCAAUCCUGCGAGCAUGUCUGUUUGAGUGUCC
............(.(...............................................................................)(..............)(........................).)..............

ORB p-value ORB frequency
(per structure per nucleotide)
Means
ratio
1 G(A(U)) < 0.001 1.35
X66325.1/2369-2523
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
...................................................................................................1.......................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.....
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
2 (()()(Y)N)Y < 0.001 6.44
X66325.1/2369-2523
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
...................................................................................................1.......................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.....
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
ORB p-value ORB frequency
(per structure per nucleotide)
Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide)
Means
ratio
1 G(AA)C < 0.001 1.8
X66325.1/2369-2523
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
GACUCUCGGCAACGGAUAUCUUGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCCAAGCCUUCUGGCCGAGGGCACGUCUGCCUGGGUGUCA
...................................................................................................1.......................................................
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2.........3.........4.........5.....
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
NCM p-value NCM frequency
(per structure per nucleotide)
Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).