D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

microRNA mir-221   (Rfam: RF00651)


Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented

((U)CU)G
(.G.().UC.)
G(UN(U))
((A)G)C
((C)U)A
(.Y.)
C(U(G))

100.0
100.0
100.0
100.0
100.0
100.0
100.0

((U)CU)G
(.Y.)

% of positive sequence with ORB






Deep neural network:

5-fold cross-validation: 98.9 %
(± 0.39 %)

Decision tree:

5-fold cross-validation: 95.3 %
(± 2.32 %)

D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 97.3 %
(± 2.59 %)
of AAQR03181317.1/33319-33250
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
(((...((((((((((.((((.(.(((.(..((....)).).))).).))))..))))))))))..)).)
.........1.........2.........3.........4.........5.........6.........7
1234567890123456789012345678901234567890123456789012345678901234567890

abstract shape: ()

Number of sequences
Structure ORBs (out of 46) (%)
1 ((U)CU)G
45 97.8
>AL831718.6/88302-88233
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
>BAAE01085056.1/1241-1173
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUCAAUUCUACAGCUACAUUGUCUGCUGGGUUUCUG
...........(..(.......................................)..)...........
>CAAB02002407.1/76501-76568
UCUGGACCUGGCAUAUAGUGUAGGAUUCUGUGUGUCAGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(......................................)..)...........
>AALT01657316.1/439-370
CGUGAACCUGGCACACAAUGUAGAUUUCUGUAUUUAUUUAACAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
>AAFR03036723.1/3502-3571
CAUGAACCUGGCAUACAAUGUAGAAUUCUGUGUUUAUUAAGUAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
>AC172026.3/74859-74931
UGGCUGCUCAGUAGUCAGUGUAGGAUCUGUCCGACAGUCUCACUAACAGCUACAUCUGAUUACUGGGUCACCA
...............(.(....................................)..)...............
>AANH01006963.1/44202-44271
UCUGGACCUGGCAUUCAGUGUAGGAUUCUGUGUGUGUCAAUCUACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
>AAPY01377193.1/1697-1628
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
>AANG01530718.1/118-187
CGUGAACCUGGCAUACAAUGUAGAUAUCUGUGUUUCUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAA
...........(..(........................................)..)...........
>AAGW02040329.1/185905-185974
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUUUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
>CU550700.7/20157-20229
CUCUGGCCCUGGCACACAGUGUAUUGGUCUGUGUGUGUGUGUGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
............(..(..........................................)..)...........
>AAVX01067207.1/2671-2602
CGGGUGCUCAGUAGCUAGUGUAGGAUCUGUUUUGUCAUUUCUACAGCUACAUCUGGUUACUGGGUCUCUG
...............((..................................)..)...............
>AL831718.6/88895-88826
CAGUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUGGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>ABQF01021060.1/73180-73249
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCCA
...........(..(........................................)..)...........
>AAPN01358095.1/70-142
CGUCUGCUCAGUAGUUGGUGUAGGAUCUGUCUGACAUGAUUAAGAACAGCUACAUCUGAUUACUGGGUCACCG
...............(.(....................................)..)...............
>AAPE02021676.1/5049-4980
CUUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
>AANH01009585.1/5625-5558
CGGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCCG
...............((................................)..)...............
>CAAK05045962.1/11661-11726
ACUCAGUACUCGGUGUAGAGUCUGUGUGAUUCAGAAGAGCAGCUACAUCUGAAUACUGGGUCAGUG
..........((...................................)..)...............
>AAWZ02010876.1/96576-96509
CCUGAACCUGGCAUACAAUGUAGAAUUCUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(......................................)..)...........
>AAFR03036723.1/2919-2988
CAUUCGCUCAGUAGUCAGUGUAGAUACUGUCUCUUUCCAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>AY866254.1/483-552
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUCGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
>AANH01009585.1/5114-5044
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGGUUAAAUUCAACAGCUACAUUGUCUGCUGGGUUUCUG
...........(..(.........................................)..)...........
>CAAB02004718.1/39836-39906
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCCG
...........(..(.........................................)..)...........
>BAAE01342535.1/103-172
UCUGGACCUGGCAUACAGUGUAGUAUUCUGUGUGCGUCCGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
>AALT01657316.1/1356-1287
CAAUGACUCAGUAGCCGGUGUAGAUCCUGUGUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>CAAB02002407.1/76211-76278
CAGUUGCUCAGUAGUCAGUGUAGAUCCUGUGGGGCUGUCAGCAGCUACAUCUGGCUACUGGGUCUCCG
...............((................................)..)...............
>AANN01137280.1/539-470
CAAUGGCUCAGUAGUCAGUGUAGAUCCUGUGUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>AC194656.3/28401-28470
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUCGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>AAPN01034572.1/4190-4257
CAAUCGCUCAGUAGUCAGUGUAGAUCCUGUAUUCUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((................................)..)...............
>AAQQ01365689.1/55-1
CAAUGGCCCAGUAACCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUG
..............(..(.................................)..)
>AAWZ02029746.1/3142-3211
GGGCUGCUCAGUAGUCGGUGUAGAAUCUGUCUGAUGAUACCCACAGCUACAUCUGAUUACUGGGUUUCCU
...............((..................................)..)...............
>AAPE02021676.1/5735-5666
CAGUGGCUCAGUAGUCAGUGUAGAUCCUGUCUUUUAUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>AGAI01001682.1/35482-35550
CAAUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUUACAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((.................................)..)...............
>AAGU03070171.1/83261-83330
CAAUGGCUCAGUAGCUAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>AAYZ01618848.1/488-419
CUUGAACCUGGCAUACAAUGUAGAUUUCUGUAUUUUCUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
>CAAB02004718.1/39554-39621
CAGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((................................)..)...............
>AGCE01118371.1/24202-24133
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>AY866255.1/442-511
CAGUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>AAWZ02010876.1/97521-97453
CAGUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUCUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((.................................)..)...............
>AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>CU855912.5/22126-22196
UGCAGACUCAGUACUCGGUGUAGAGUCUGUGUGAUUCAGAAGAGCAGCUACAUCUGAAUACUGGGUCAGUG
...............((...................................)..)...............
>AANH01006963.1/43986-44053
CGGGUGCUCAGUAGUCAGUGUAGAUCCUGUGCGGCUGGCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((................................)..)...............
>AAIY01624465.1/478-547
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
>CAAE01017358.1/322-252
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCGG
...........(..(.........................................)..)...........
>AAGV020094308.1/2454-2385
CAAAGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((..................................)..)...............
2 ((U)CU)G
(.G.().UC.)
42 91.3
>CAAB02002407.1/76501-76568
UCUGGACCUGGCAUAUAGUGUAGGAUUCUGUGUGUCAGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(......................................)..)......)..).
>AAPY01377193.1/1697-1628
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(........................................)..)......)...)
>AAPE02021676.1/5049-4980
CUUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAG
.(..(......(..(........................................)..)......)..).
>AANH01009585.1/5625-5558
CGGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCCG
...(..(........(.(...............................)..)........)..)...
>AALT01657316.1/439-370
CGUGAACCUGGCACACAAUGUAGAUUUCUGUAUUUAUUUAACAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(........................................)..)......)...)
>AAFR03036723.1/2919-2988
CAUUCGCUCAGUAGUCAGUGUAGAUACUGUCUCUUUCCAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(.................................)..)........)..)...
>AAGU03070171.1/83261-83330
CAAUGGCUCAGUAGCUAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
.(...(.........(.(.................................)..).........)...).
>AAWZ02010876.1/97521-97453
CAGUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUCUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(................................)..)........)..)...
>AANH01006963.1/43986-44053
CGGGUGCUCAGUAGUCAGUGUAGAUCCUGUGCGGCUGGCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(...............................)..)........)..)...
>AAWZ02010876.1/96576-96509
CCUGAACCUGGCAUACAAUGUAGAAUUCUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(......................................)..)......)..).
>AAWZ02029746.1/3142-3211
GGGCUGCUCAGUAGUCGGUGUAGAAUCUGUCUGAUGAUACCCACAGCUACAUCUGAUUACUGGGUUUCCU
.(...(.........(.(.................................)..).........)...).
>CU550700.7/20157-20229
CUCUGGCCCUGGCACACAGUGUAUUGGUCUGUGUGUGUGUGUGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
.(...(......(..(..........................................)..)......)..).
>AAPN01034572.1/4190-4257
CAAUCGCUCAGUAGUCAGUGUAGAUCCUGUAUUCUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........((................................)..)........)..)...
>AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........(.(.................................)..)........)..)...
>AAPE02021676.1/5735-5666
CAGUGGCUCAGUAGUCAGUGUAGAUCCUGUCUUUUAUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(.................................)..)........)..)...
>AAYZ01618848.1/488-419
CUUGAACCUGGCAUACAAUGUAGAUUUCUGUAUUUUCUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
.(..(......(..(........................................)..)......)..).
>AY866254.1/483-552
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUCGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(........................................)..)......)..).
>AAFR03036723.1/3502-3571
CAUGAACCUGGCAUACAAUGUAGAAUUCUGUGUUUAUUAAGUAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(........................................)..)......)...)
>CAAE01017358.1/322-252
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCGG
.(..(......(..(.........................................)..)......)..).
>AY866255.1/442-511
CAGUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(.................................)..)........)..)...
>AAGW02040329.1/185905-185974
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUUUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(........................................)..)......)..).
>AL831718.6/88302-88233
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(........................................)..)......)..).
>BAAE01342535.1/103-172
UCUGGACCUGGCAUACAGUGUAGUAUUCUGUGUGCGUCCGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(........................................)..)......)..).
>AGAI01001682.1/35482-35550
CAAUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUUACAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........((.................................)..)........)..)...
>AANH01009585.1/5114-5044
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGGUUAAAUUCAACAGCUACAUUGUCUGCUGGGUUUCUG
..(.(......(..(.........................................)..)......)...)
>BAAE01085056.1/1241-1173
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUCAAUUCUACAGCUACAUUGUCUGCUGGGUUUCUG
..(.(......(..(.......................................)..)......)...)
>AAGV020094308.1/2454-2385
CAAAGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(.................................)..)........)..)...
>AGCE01118371.1/24202-24133
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(.................................)..)........)..)...
>AANH01006963.1/44202-44271
UCUGGACCUGGCAUUCAGUGUAGGAUUCUGUGUGUGUCAAUCUACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(........................................)..)......)..).
>CAAB02002407.1/76211-76278
CAGUUGCUCAGUAGUCAGUGUAGAUCCUGUGGGGCUGUCAGCAGCUACAUCUGGCUACUGGGUCUCCG
...(..(........(.(...............................)..)........)..)...
>AC172026.3/74859-74931
UGGCUGCUCAGUAGUCAGUGUAGGAUCUGUCCGACAGUCUCACUAACAGCUACAUCUGAUUACUGGGUCACCA
...(..(........(.(....................................)..)........)..)...
>AAVX01067207.1/2671-2602
CGGGUGCUCAGUAGCUAGUGUAGGAUCUGUUUUGUCAUUUCUACAGCUACAUCUGGUUACUGGGUCUCUG
...(..(........((..................................)..)........)..)...
>CAAB02004718.1/39836-39906
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCCG
..(.(......(..(.........................................)..)......)...)
>AL831718.6/88895-88826
CAGUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUGGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(.................................)..)........)..)...
>ABQF01021060.1/73180-73249
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCCA
..(.(......(..(........................................)..)......)...)
>AAPN01358095.1/70-142
CGUCUGCUCAGUAGUUGGUGUAGGAUCUGUCUGACAUGAUUAAGAACAGCUACAUCUGAUUACUGGGUCACCG
..(...(........(.(....................................)..)........)..)...
>AAIY01624465.1/478-547
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(.................................)..)........)..)...
>AANN01137280.1/539-470
CAAUGGCUCAGUAGUCAGUGUAGAUCCUGUGUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(.................................)..)........)..)...
>AC194656.3/28401-28470
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUCGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(.................................)..)........)..)...
>AALT01657316.1/1356-1287
CAAUGACUCAGUAGCCGGUGUAGAUCCUGUGUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(.................................)..)........)..)...
>AANG01530718.1/118-187
CGUGAACCUGGCAUACAAUGUAGAUAUCUGUGUUUCUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAA
..(.(......(..(........................................)..)......)...)
>CAAB02004718.1/39554-39621
CAGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(...............................)..)........)..)...
3 ((U)CU)G
(.G.().UC.)
G(UN(U))
37 80.4
>AAPE02021676.1/5049-4980
CUUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAG
.(..(......(..(..............(..(........)..)..........)..)......)..).
>AAPN01034572.1/4190-4257
CAAUCGCUCAGUAGUCAGUGUAGAUCCUGUAUUCUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........((...........(..(.....))..........)..)........)..)...
>AGCE01118371.1/24202-24133
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..........(..(......).)..........)..)........)..)...
>AC194656.3/28401-28470
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUCGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..........(..(......).)..........)..)........)..)...
>AL831718.6/88895-88826
CAGUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUGGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..........(..(......).)..........)..)........)..)...
>CAAB02004718.1/39836-39906
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCCG
..(.(......(..(..............(..(......)..).............)..)......)...)
>AAIY01624465.1/478-547
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..........(..(......).)..........)..)........)..)...
>AALT01657316.1/1356-1287
CAAUGACUCAGUAGCCGGUGUAGAUCCUGUGUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..........(..(......).)..........)..)........)..)...
>AY866255.1/442-511
CAGUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..........(..(......).)..........)..)........)..)...
>AL831718.6/88302-88233
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(..............(..(......).).............)..)......)..).
>BAAE01085056.1/1241-1173
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUCAAUUCUACAGCUACAUUGUCUGCUGGGUUUCUG
..(.(......(..(..............(..(......)).............)..)......)...)
>AANN01137280.1/539-470
CAAUGGCUCAGUAGUCAGUGUAGAUCCUGUGUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..........(..(......).)..........)..)........)..)...
>ABQF01021060.1/73180-73249
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCCA
..(.(......(..(..............(..(......).).............)..)......)...)
>CAAB02004718.1/39554-39621
CAGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..........(..(.....))..........)..)........)..)...
>AAPE02021676.1/5735-5666
CAGUGGCUCAGUAGUCAGUGUAGAUCCUGUCUUUUAUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..........(..(......).)..........)..)........)..)...
>CAAB02002407.1/76501-76568
UCUGGACCUGGCAUAUAGUGUAGGAUUCUGUGUGUCAGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(..............(..(......)..)..........)..)......)..).
>AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
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>AAWZ02029746.1/3142-3211
GGGCUGCUCAGUAGUCGGUGUAGAAUCUGUCUGAUGAUACCCACAGCUACAUCUGAUUACUGGGUUUCCU
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>AAWZ02010876.1/97521-97453
CAGUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUCUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
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>AAFR03036723.1/2919-2988
CAUUCGCUCAGUAGUCAGUGUAGAUACUGUCUCUUUCCAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
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>CU550700.7/20157-20229
CUCUGGCCCUGGCACACAGUGUAUUGGUCUGUGUGUGUGUGUGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
.(...(......(..(..............(..(......)...).............)..)......)..).
>CAAE01017358.1/322-252
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCGG
.(..(......(..(..............(..(......).....)..........)..)......)..).
>AANH01009585.1/5625-5558
CGGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCCG
...(..(........(.(..........(..(.....))..........)..)........)..)...
>AANH01009585.1/5114-5044
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGGUUAAAUUCAACAGCUACAUUGUCUGCUGGGUUUCUG
..(.(......(..(..............(..(......)..).............)..)......)...)
>AAGW02040329.1/185905-185974
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUUUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(..............(..(......).).............)..)......)..).
>AANH01006963.1/44202-44271
UCUGGACCUGGCAUUCAGUGUAGGAUUCUGUGUGUGUCAAUCUACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(..............(..(........)..)..........)..)......)..).
>BAAE01342535.1/103-172
UCUGGACCUGGCAUACAGUGUAGUAUUCUGUGUGCGUCCGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(..............(..(........)..)..........)..)......)..).
>AGAI01001682.1/35482-35550
CAAUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUUACAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........((...........(..(......))..........)..)........)..)...
>AANG01530718.1/118-187
CGUGAACCUGGCAUACAAUGUAGAUAUCUGUGUUUCUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAA
..(.(......(..(..............(..(......).).............)..)......)...)
>AAPY01377193.1/1697-1628
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(..............(..(......).).............)..)......)...)
>AAGV020094308.1/2454-2385
CAAAGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..........(..(......).)..........)..)........)..)...
>AY866254.1/483-552
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUCGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(..............(..(........)..)..........)..)......)..).
>AAPN01358095.1/70-142
CGUCUGCUCAGUAGUUGGUGUAGGAUCUGUCUGACAUGAUUAAGAACAGCUACAUCUGAUUACUGGGUCACCG
..(...(........(.(..........(..(......)..)............)..)........)..)...
>AAWZ02010876.1/96576-96509
CCUGAACCUGGCAUACAAUGUAGAAUUCUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(..............(..(.......).)..........)..)......)..).
>AAYZ01618848.1/488-419
CUUGAACCUGGCAUACAAUGUAGAUUUCUGUAUUUUCUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
.(..(......(..(..............(..(......)....)..........)..)......)..).
>AALT01657316.1/439-370
CGUGAACCUGGCACACAAUGUAGAUUUCUGUAUUUAUUUAACAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(..............(..(......).).............)..)......)...)
>AAGU03070171.1/83261-83330
CAAUGGCUCAGUAGCUAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
.(...(.........(.(..........(..(......).)..........)..).........)...).
4 ((U)CU)G
(.G.().UC.)
G(UN(U))
((A)G)C
31 67.4
>AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........(.(....(.(...(..(......).)...).)....)..)........)..)...
>AL831718.6/88302-88233
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.......(..(...(..(......).)...).).......)..)......)..).
>AANN01137280.1/539-470
CAAUGGCUCAGUAGUCAGUGUAGAUCCUGUGUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......).)...).)....)..)........)..)...
>AANH01009585.1/5114-5044
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGGUUAAAUUCAACAGCUACAUUGUCUGCUGGGUUUCUG
..(.(......(..(.......(..(...(..(......)..)...).).......)..)......)...)
>AY866255.1/442-511
CAGUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......).)...).)....)..)........)..)...
>AGAI01001682.1/35482-35550
CAAUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUUACAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........((.....(.(...(..(......))...).)....)..)........)..)...
>AC194656.3/28401-28470
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUCGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......).)...).)....)..)........)..)...
>AAPY01377193.1/1697-1628
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.......(..(...(..(......).)...).).......)..)......)...)
>AL831718.6/88895-88826
CAGUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUGGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......).)...).)....)..)........)..)...
>AANG01530718.1/118-187
CGUGAACCUGGCAUACAAUGUAGAUAUCUGUGUUUCUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAA
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>AAFR03036723.1/2919-2988
CAUUCGCUCAGUAGUCAGUGUAGAUACUGUCUCUUUCCAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......).)...).)....)..)........)..)...
>AAGU03070171.1/83261-83330
CAAUGGCUCAGUAGCUAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
.(...(.........(.(....(.(...(..(......).)...).)....)..).........)...).
>AGCE01118371.1/24202-24133
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......).)...).)....)..)........)..)...
>AALT01657316.1/439-370
CGUGAACCUGGCACACAAUGUAGAUUUCUGUAUUUAUUUAACAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.......(..(...(..(......).)...).).......)..)......)...)
>AAPN01034572.1/4190-4257
CAAUCGCUCAGUAGUCAGUGUAGAUCCUGUAUUCUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........((.....(.(...(..(.....))...).)....)..)........)..)...
>AAWZ02029746.1/3142-3211
GGGCUGCUCAGUAGUCGGUGUAGAAUCUGUCUGAUGAUACCCACAGCUACAUCUGAUUACUGGGUUUCCU
.(...(.........(.(....(.(...(..(......)..)..).)....)..).........)...).
>AAPE02021676.1/5735-5666
CAGUGGCUCAGUAGUCAGUGUAGAUCCUGUCUUUUAUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......).)...).)....)..)........)..)...
>AAWZ02010876.1/96576-96509
CCUGAACCUGGCAUACAAUGUAGAAUUCUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.......(..(...(..(.......).)).).......)..)......)..).
>AAIY01624465.1/478-547
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......).)...).)....)..)........)..)...
>BAAE01085056.1/1241-1173
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUCAAUUCUACAGCUACAUUGUCUGCUGGGUUUCUG
..(.(......(..(.......(..(...(..(......))...).).......)..)......)...)
>ABQF01021060.1/73180-73249
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCCA
..(.(......(..(.......(..(...(..(......).)...).).......)..)......)...)
>CAAB02002407.1/76501-76568
UCUGGACCUGGCAUAUAGUGUAGGAUUCUGUGUGUCAGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.......(..(...(..(......)..)).).......)..)......)..).
>CAAB02004718.1/39554-39621
CAGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(.....))...).)....)..)........)..)...
>CAAB02004718.1/39836-39906
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCCG
..(.(......(..(.......(..(...(..(......)..)...).).......)..)......)...)
>CAAE01017358.1/322-252
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCGG
.(..(......(..(.......(..(...(..(......).....)).).......)..)......)..).
>AANH01009585.1/5625-5558
CGGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCCG
...(..(........(.(....(.(...(..(.....))...).)....)..)........)..)...
>AAYZ01618848.1/488-419
CUUGAACCUGGCAUACAAUGUAGAUUUCUGUAUUUUCUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
.(..(......(..(.......(..(...(..(......)....)).).......)..)......)..).
>AAGW02040329.1/185905-185974
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUUUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.......(..(...(..(......).)...).).......)..)......)..).
>AAGV020094308.1/2454-2385
CAAAGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......).)...).)....)..)........)..)...
>AAWZ02010876.1/97521-97453
CAGUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUCUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......))...).)....)..)........)..)...
>AALT01657316.1/1356-1287
CAAUGACUCAGUAGCCGGUGUAGAUCCUGUGUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(....(.(...(..(......).)...).)....)..)........)..)...
5 ((U)CU)G
(.G.().UC.)
G(UN(U))
((A)G)C
((C)U)A
25 54.3
>AAGU03070171.1/83261-83330
CAAUGGCUCAGUAGCUAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
.(...(.........(.(..(.(.(...(..(......).)...).).)..)..).........)...).
>CAAB02004718.1/39554-39621
CAGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(.....))...).).)..)..)........)..)...
>AAFR03036723.1/2919-2988
CAUUCGCUCAGUAGUCAGUGUAGAUACUGUCUCUUUCCAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
>AC194656.3/28401-28470
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUCGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
>AGCE01118371.1/24202-24133
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
>AAPN01034572.1/4190-4257
CAAUCGCUCAGUAGUCAGUGUAGAUCCUGUAUUCUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........((...(.(.(...(..(.....))...).).)..)..)........)..)...
>AANH01009585.1/5114-5044
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGGUUAAAUUCAACAGCUACAUUGUCUGCUGGGUUUCUG
..(.(......(..(.....(.(..(...(..(......)..)...).).).....)..)......)...)
>AL831718.6/88895-88826
CAGUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUGGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
>AALT01657316.1/1356-1287
CAAUGACUCAGUAGCCGGUGUAGAUCCUGUGUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
>AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
>AALT01657316.1/439-370
CGUGAACCUGGCACACAAUGUAGAUUUCUGUAUUUAUUUAACAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.....(.(..(...(..(......).)...).).).....)..)......)...)
>AGAI01001682.1/35482-35550
CAAUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUUACAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........((...(.(.(...(..(......))...).).)..)..)........)..)...
>AAWZ02029746.1/3142-3211
GGGCUGCUCAGUAGUCGGUGUAGAAUCUGUCUGAUGAUACCCACAGCUACAUCUGAUUACUGGGUUUCCU
.(...(.........(.(..(.(.(...(..(......)..)..).).)..)..).........)...).
>ABQF01021060.1/73180-73249
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCCA
..(.(......(..(.....(.(..(...(..(......).)...).).).....)..)......)...)
>AAIY01624465.1/478-547
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
>AANG01530718.1/118-187
CGUGAACCUGGCAUACAAUGUAGAUAUCUGUGUUUCUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAA
..(.(......(..(.....(.(..(...(..(......).)...).).).....)..)......)...)
>AAPY01377193.1/1697-1628
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.....(.(..(...(..(......).)...).).).....)..)......)...)
>AANH01009585.1/5625-5558
CGGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCCG
...(..(........(.(..(.(.(...(..(.....))...).).)..)..)........)..)...
>AL831718.6/88302-88233
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.....(.(..(...(..(......).)...).).).....)..)......)..).
>AAGW02040329.1/185905-185974
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUUUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.....(.(..(...(..(......).)...).).).....)..)......)..).
>AY866255.1/442-511
CAGUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
>AAPE02021676.1/5735-5666
CAGUGGCUCAGUAGUCAGUGUAGAUCCUGUCUUUUAUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
>AANN01137280.1/539-470
CAAUGGCUCAGUAGUCAGUGUAGAUCCUGUGUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
>AAWZ02010876.1/97521-97453
CAGUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUCUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......))...).).)..)..)........)..)...
>AAGV020094308.1/2454-2385
CAAAGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..(......).)...).).)..)..)........)..)...
6 ((U)CU)G
(.G.().UC.)
G(UN(U))
((A)G)C
((C)U)A
(.Y.)
24 52.2
>AAGV020094308.1/2454-2385
CAAAGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..((....)).)...).).)..)..)........)..)...
>AGAI01001682.1/35482-35550
CAAUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUUACAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........((...(.(.(...(..((....)))...).).)..)..)........)..)...
>AAGU03070171.1/83261-83330
CAAUGGCUCAGUAGCUAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
.(...(.........(.(..(.(.(...(..((....)).)...).).)..)..).........)...).
>AL831718.6/88302-88233
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.....(.(..(...(..((....)).)...).).).....)..)......)..).
>AAPE02021676.1/5735-5666
CAGUGGCUCAGUAGUCAGUGUAGAUCCUGUCUUUUAUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..((....)).)...).).)..)..)........)..)...
>AAWZ02010876.1/97521-97453
CAGUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUCUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..((....)))...).).)..)..)........)..)...
>AGCE01118371.1/24202-24133
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..((....)).)...).).)..)..)........)..)...
>AANG01530718.1/118-187
CGUGAACCUGGCAUACAAUGUAGAUAUCUGUGUUUCUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAA
..(.(......(..(.....(.(..(...(..((....)).)...).).).....)..)......)...)
>AANN01137280.1/539-470
CAAUGGCUCAGUAGUCAGUGUAGAUCCUGUGUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..((....)).)...).).)..)..)........)..)...
>AANH01009585.1/5625-5558
CGGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCCG
...(..(........(.(..(.(.(...(..((...)))...).).)..)..)........)..)...
>AALT01657316.1/1356-1287
CAAUGACUCAGUAGCCGGUGUAGAUCCUGUGUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..((....)).)...).).)..)..)........)..)...
>AAFR03036723.1/2919-2988
CAUUCGCUCAGUAGUCAGUGUAGAUACUGUCUCUUUCCAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..((....)).)...).).)..)..)........)..)...
>AAGW02040329.1/185905-185974
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUUUUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
..(.(......(..(.....(.(..(...(..((....)).)...).).).....)..)......)..).
>AC194656.3/28401-28470
CAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUCGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..((....)).)...).).)..)..)........)..)...
>AAPN01034572.1/4190-4257
CAAUCGCUCAGUAGUCAGUGUAGAUCCUGUAUUCUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........((...(.(.(...(..((...)))...).).)..)..)........)..)...
>CAAB02004718.1/39554-39621
CAGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...(..(........(.(..(.(.(...(..((...)))...).).)..)..)........)..)...
>AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
..(...(........(.(..(.(.(...(..((....)).)...).).)..)..)........)..)...
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.(...(.........(.(.................................)..).........)...).
.(...(.........(.(..........(..(......)..).........)..).........)...).
.(...(.........(.(....(.(...(..(......)..)..).)....)..).........)...).
.(...(.........(.(..(.(.(...(..(......)..)..).).)..)..).........)...).
>BAAE01085056.1/1241-1173
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUCAAUUCUACAGCUACAUUGUCUGCUGGGUUUCUG
...........(..(.......................................)..)...........
..(.(......(..(.......................................)..)......)...)
..(.(......(..(..............(..(......)).............)..)......)...)
..(.(......(..(.......(..(...(..(......))...).).......)..)......)...)
>CAAB02002407.1/76501-76568
UCUGGACCUGGCAUAUAGUGUAGGAUUCUGUGUGUCAGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(......................................)..)...........
..(.(......(..(......................................)..)......)..).
..(.(......(..(..............(..(......)..)..........)..)......)..).
..(.(......(..(.......(..(...(..(......)..)).).......)..)......)..).
>AAWZ02010876.1/96576-96509
CCUGAACCUGGCAUACAAUGUAGAAUUCUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(......................................)..)...........
..(.(......(..(......................................)..)......)..).
..(.(......(..(..............(..(.......).)..........)..)......)..).
..(.(......(..(.......(..(...(..(.......).)).).......)..)......)..).
>CAAB02004718.1/39836-39906
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCCG
...........(..(.........................................)..)...........
..(.(......(..(.........................................)..)......)...)
..(.(......(..(..............(..(......)..).............)..)......)...)
..(.(......(..(.......(..(...(..(......)..)...).).......)..)......)...)
>AAYZ01618848.1/488-419
CUUGAACCUGGCAUACAAUGUAGAUUUCUGUAUUUUCUGGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
.(..(......(..(........................................)..)......)..).
.(..(......(..(..............(..(......)....)..........)..)......)..).
.(..(......(..(.......(..(...(..(......)....)).).......)..)......)..).
>CAAE01017358.1/322-252
CCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGCUUGGAUUCUACAGCUACAUUGUCUGCUGGGUUUCGG
...........(..(.........................................)..)...........
.(..(......(..(.........................................)..)......)..).
.(..(......(..(..............(..(......).....)..........)..)......)..).
.(..(......(..(.......(..(...(..(......).....)).).......)..)......)..).
>AANH01006963.1/44202-44271
UCUGGACCUGGCAUUCAGUGUAGGAUUCUGUGUGUGUCAAUCUACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
..(.(......(..(........................................)..)......)..).
..(.(......(..(..............(..(........)..)..........)..)......)..).
>CU550700.7/20157-20229
CUCUGGCCCUGGCACACAGUGUAUUGGUCUGUGUGUGUGUGUGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
............(..(..........................................)..)...........
.(...(......(..(..........................................)..)......)..).
.(...(......(..(..............(..(......)...).............)..)......)..).
>AAPN01358095.1/70-142
CGUCUGCUCAGUAGUUGGUGUAGGAUCUGUCUGACAUGAUUAAGAACAGCUACAUCUGAUUACUGGGUCACCG
...............(.(....................................)..)...............
..(...(........(.(....................................)..)........)..)...
..(...(........(.(..........(..(......)..)............)..)........)..)...
>AAPE02021676.1/5049-4980
CUUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
.(..(......(..(........................................)..)......)..).
.(..(......(..(..............(..(........)..)..........)..)......)..).
>AY866254.1/483-552
CAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUCGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
..(.(......(..(........................................)..)......)..).
..(.(......(..(..............(..(........)..)..........)..)......)..).
>BAAE01342535.1/103-172
UCUGGACCUGGCAUACAGUGUAGUAUUCUGUGUGCGUCCGUCUACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
..(.(......(..(........................................)..)......)..).
..(.(......(..(..............(..(........)..)..........)..)......)..).
>AAFR03036723.1/3502-3571
CAUGAACCUGGCAUACAAUGUAGAAUUCUGUGUUUAUUAAGUAACAGCUACAUUGUCUGCUGGGUUUCAG
...........(..(........................................)..)...........
..(.(......(..(........................................)..)......)...)
>AC172026.3/74859-74931
UGGCUGCUCAGUAGUCAGUGUAGGAUCUGUCCGACAGUCUCACUAACAGCUACAUCUGAUUACUGGGUCACCA
...............(.(....................................)..)...............
...(..(........(.(....................................)..)........)..)...
>AAVX01067207.1/2671-2602
CGGGUGCUCAGUAGCUAGUGUAGGAUCUGUUUUGUCAUUUCUACAGCUACAUCUGGUUACUGGGUCUCUG
...............((..................................)..)...............
...(..(........((..................................)..)........)..)...
>CAAB02002407.1/76211-76278
CAGUUGCUCAGUAGUCAGUGUAGAUCCUGUGGGGCUGUCAGCAGCUACAUCUGGCUACUGGGUCUCCG
...............((................................)..)...............
...(..(........(.(...............................)..)........)..)...
>AANH01006963.1/43986-44053
CGGGUGCUCAGUAGUCAGUGUAGAUCCUGUGCGGCUGGCAGCAGCUACAUCUGGCUACUGGGUCUCUG
...............((................................)..)...............
...(..(........(.(...............................)..)........)..)...
>CAAK05045962.1/11661-11726
ACUCAGUACUCGGUGUAGAGUCUGUGUGAUUCAGAAGAGCAGCUACAUCUGAAUACUGGGUCAGUG
..........((...................................)..)...............
>AAQQ01365689.1/55-1
CAAUGGCCCAGUAACCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUG
..............(..(.................................)..)
>CU855912.5/22126-22196
UGCAGACUCAGUACUCGGUGUAGAGUCUGUGUGAUUCAGAAGAGCAGCUACAUCUGAAUACUGGGUCAGUG
...............((...................................)..)...............

ORB p-value ORB frequency
(per structure per nucleotide)
Means
ratio
1 ((U)CU)G < 0.001 27.3
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
.........1.........2.........3.........4.........5.........6.........7
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2 (.G.().UC.) < 0.001 24.6
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
.........1.........2.........3.........4.........5.........6.........7
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3 G(UN(U)) < 0.001 12.4
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
.........1.........2.........3.........4.........5.........6.........7
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4 ((A)G)C < 0.001 5.8
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
.........1.........2.........3.........4.........5.........6.........7
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5 ((C)U)A < 0.001 2.96
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
.........1.........2.........3.........4.........5.........6.........7
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6 C(U(G)) < 0.001 2.22
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
.........1.........2.........3.........4.........5.........6.........7
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7 (.Y.) < 0.001 1.44
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
.........1.........2.........3.........4.........5.........6.........7
1234567890123456789012345678901234567890123456789012345678901234567890
ORB p-value ORB frequency
(per structure per nucleotide)
Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide)
Means
ratio
1 ((U)CU)G < 0.001 27.3
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
.........1.........2.........3.........4.........5.........6.........7
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2 (R()UY) < 0.001 23
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
.........1.........2.........3.........4.........5.........6.........7
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3 ((A)C)A < 0.001 4.33
AAQR03181317.1/33319-33250
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
CGAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUAGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUG
.........1.........2.........3.........4.........5.........6.........7
1234567890123456789012345678901234567890123456789012345678901234567890
NCM p-value NCM frequency
(per structure per nucleotide)
Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).