D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

Cyclic di-GMP-II riboswitch (Rfam: RF01786)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

(()(R)C)C
G(NG)N
(.GN.)
((G)R)C

97.9
97.9
100.0
89.6

G(NG)N
((G)R)C

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 96.9 %
(± 0.434 %)

Decision tree:

5-fold cross-validation: 81.6 %
(± 13.2 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 86.3 %
(± 7.85 %)

of ABSO01005747.1/296-213

ABSO01005747.1/296-213

GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU
...((..(((((.((((.(((((((((((((((..(....)))))))))))))))))))(.(.(..))).)).))))....).)
.........1.........2.........3.........4.........5.........6.........7.........8....
123456789012345678901234567890123456789012345678901234567890123456789012345678901234

abstract shape: `(()())`

					Number of sequences
	Structure	ORBs			(out of 48)	(%)
1		(()(R)C)C			47	97.9
>BA000016.3/197260-197343 AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUGGAAUAUGCUGAGUUAGUGAUGCAACCGACUAUAUUUAUA ..........((.......................)(...............................).)............. >CP000382.1/1875256-1875172 UUUUUAAAAGGAGACAUUUGAACUAUAUACUUUAUUUGGGCACUUUGUAUAUAGGGAGUCAUUAGUGCAACCGACCUUAUUUUAU ..........((....)(...................................................).)............. >AE001437.1/3752962-3752879 UUAAGCGUUGGAGACUGUGAAGAAUUUCUUGUAUUUGGGCACCUUAGAAAUUUGGAGUUAGUGGUGCAACCUGCCAACAAUAAU ............((.....................)(...............................).)............. >CP001825.1/388010-388096 AAUUAGCGUAGAGGCGACGAAGUCCGCUUACCUAUAUGGGCACCAUGGGAGCGGAUGGAGCCACUGGUGCAACCGGCUACUGAGAAG ............((.................................................)(......).)............. >CP000721.1/3552610-3552527 AGAACAAUUGGAAGCGAUGAAAAAUUCUCUAUAUCUGGGCACUUUGAGAAUUUGGAGCUAGUUGUGCAACCGACCAAUUAAAAC .............((.............................................)(......).)............. >CP001720.1/3973350-3973434 GAGUUUCUUGGGAACUAUGACAUCAACUCUUUAUCUGGGCAUCUUAGAGUUGAUUGAGUUAGUGAUGCAACCGACCUUGAAGAAA .............(.(...........................................)(........).)............. >BAAW01001404.1/567-484 AAUAAAUCUGGAAGUAAUGAUAAAUUCUCUUUAUUUGGGCACUUUGAGGAUUUUGAACUAGUAGUGCAACCCGCCAACAAUUAA ..........((.......................)(...............................).)............. >AAWL01000006.1/67971-67888 ACUGCAAUGGGUGUGAUGAAGUCCGGACAGUAAUGUGGGCACUUAGUCCGGACCGAGCAAGUAGUGCAACCGACCAGAUGCAAA ..............(..(...................................)(.............).)............. >BA000004.3/387918-388001 AAUCAAUAGGGAAGCAACGAAGCAUAGCCUUUAUAUGGACACUUGGGUUAUGUGGAGCUACUAGUGUAACCGGCCCUCCUUUAA .............((.....................)(..............................).)............. >CP000724.1/3560727-3560645 AAAAAUGUAGAGCAAAUGAACUGCAGGUAUACAUGGACGCCUUAAACUGCAGGGAUGUAGUGGCGUAACCGACUAACAAUAUU ...........((.....................)(...............................).)............. >AM180355.1/3826693-3826610 AAUAUUUUAGAAACUGAGAAGUAUAUCUUAUUAUUGGGCAUCUGGAGAUAUAUGGAGUUAGUGGUGCAACCGGCUAUGAAUAUA ...........((.....................)(................................).)............. >AAOX01000007.1/31274-31356 AAGAAUAUAGAACACUGUGAUGAGCGGUUUUUAUUUGCACUUUAAACCGCUUGGAGUGACUAGUGCAGCCGGCCAAUGAUCUA .........(.(..........)(...............................................).)......... >CP000721.1/1272636-1272718 UGUAUAUAAGGAAACUGUGAUUCGAAUAUUUACUUGGGCACUUUAUAUUCGAUGAGUUAAUAGUGCAACCGACCUUUUUAUUA ...........((.....................)(...............................).)............. >CP000721.1/2550212-2550295 AUUACAAUUGGAAGCUAUGAAGAAUUCUUUCUAAGUGGGCACUUUAAGAGUUUGGAGCUAGUUGUGCAACCGACCAAUUAAGAU .............(..(..................)(...............................).)............. >AE000513.1/692045-692129 AAGUGGUUUUGAAGCAGGGAAGCAUCUGACGCAUUCGGGCGCCUUGUCAGAUGUGGAGCGAGUGGCGCGACCGGCAAAGCUGUGG .............((............)(........................................).)............. >AM180355.1/3306767-3306682 AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUAUGGAUAUACUGAGUCAGUGGUGCAACCGGCUAUGAAUAUA ............(..(............................................)(........).)............. >CP001824.1/1154935-1155018 GUGAGCGCGGAGGCGAUGACGCGCGGGCUGUAAUUUGGGCACCUCGCCCGCGCCGAGCCUGGGGUGCAACCGGCCGGCUAAGAC ......((..............)(................................................).)......... >ACOM01000005.1/2090470-2090387 CAUGUAGUUGGAAACGAAGAAUAGUUCUCUCAAUCUGGGCACCUUGGGAACUAGGAGUUAGUGGUGCAACCCGCCAGCAAAUUA ................((.................)(...............................).)............. >AP009389.1/2908378-2908465 GAGAUAGUGUGAAGCAGUGAUCUUGCAGCUAAUAUGGUCACUUUUUACGGCUGCAAGUGAGCUAAUAGUGAAACCGGCACACUGAUGC .............(..(............................................)(.........).)............. >AAFX01024083.1/557-455 CACCACUGUGGACGCUUUGAUCCGGUGUCUUGAUUUGGUCGCUUAACGUCUGGAACUUUUGACGAGGGCGCCGGGGAGCGAGUAGCGAAACCGGCCACUGGUA .............(...(.................)(....................................................).)........... >AM180355.1/3801149-3801064 CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAAGAUAUAUGGAGUUAGUAGUGCAACCUGCUAUAAAUAUA .............(.(............................................)(........).)............. >CP001791.1/1643284-1643367 ACGACAAUUGGAUGCUGAGAAGAAAUGGGUACUAUCUGGGCACUUAACCAUUUUGGAGCUGCUAGUGCAACCGGCCGGAGACAU .........((..............)(..........................................).)............ >ABSO01005747.1/296-213 GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU ..........(.(...............................................)(..............).)..... >CP000721.1/2207052-2207135 ACAAAGAUUGGGAACUAUGAAGAAUUCUCUGUAUUUGGGCAUCUUGAGAAUUUAGAGUUAAUGAUGCAACCCACCAAUCAAAAC ...........((......................)(...............................).)............. >CP001078.1/3290558-3290475 UAUAAAGUUGGAGAUUAUGAAUAGUUCUCUUUAUUUGGGCACCUUGAGAACUAGGAAUCAGUGGUGCACCCGGCCAACAAAUUA ............((......................)(.............................).).............. >AP009049.1/1160074-1160160 CAAAUUGAGGGGAACGAUGAGGUACACACUUUAAUUUGGGCAUCCUUGUGUGUAUUGGAGUUAGUGAUGCAACCGACCCUGUAUUCA ...........(.(......................)(.................................).)............. >ABVK02000002.1/96520-96604 AGGCACCUCGGAGGCGACGAAGCCUGUCCUGCAAUCUGGGCGCCUGGGACAGGUGGAGCCAGUGGCGCAACCGGCCGAGGGCGGG .........(.(................................)....(.......................).)......... >CP000923.1/1535517-1535600 AUUUUAUAAAGAGUAGAUGAAGUGAGGCUAUAUGUGGGCACUUUAUGCCUCACGGAUACAGUGGUGCAACCGGCUUUAUGUCGG ...............((.......................................)..(........).)............. >AACY020292692.1/343-428 GAGGCGUCCGGAGGCGAUGACCCGCUGAUCCCCAUUUGGGCAUCAAGGGACGCGGCGAGCCAGUGAUGCAACCGGCCGGACGGCUA .........((......................).(......................................).)......... >CP001276.1/419946-420032 CGACACCCCGGAGGCGAAGAAGCGCUGCCUGAGCGUUGGGCGCCAGUGGGCAGCGUGGAGCCAGUGGCGCACCCGGCCGGGAUAUCC .............((......................)(...............................).).............. >AE001437.1/648479-648561 UAUUUGUUUGGAAACAAUGAUGAAUUUCUUUAAAUUGGGCACUUGAGAAAUUUUGAGUUAGUAGUGCAACCGACCAACGAUUA ............((.....................)(...............................).)............ >AACY020292692.1/175-258 UCGCGAUUCGAGGGCGAUGACGCUCGUUCUGCAACAUGGGCGCUUGGAACGAGCCGAGCCAGUAGCGCAACCGAUCGGUCGACG .........((.........................)(...............................).)............ >CP000359.1/298588-298670 UUCUUGUUCCGGGGCGAAGAGGCGUGUGGUGUAUCCGGGCACCUGCCACACGCGGAGCCAGUGGUGCGACCGACGAACCGUGA .....((............)(.......................................................).).... >CP001743.1/2770688-2770773 ACCAAGUUCGGAGGUGAUGAUCCGUGAUUCCCAAUCUGGGCACCAAGGGAAACGGGGAGCCAGUGGUGCAACCGGCCGAACCCAAA .........((......................).(......................................).)......... >AAFX01078109.1/475-391 UCACCCUUCAGAGGCUUAGAUGCCUACCCCGCAACUUGGGCGCUUGGGGUACGCGGAGCCAGUAGCGCAACCGGCCGAGGGCUUC .............(..(...................)(...............................).)............. >CP000721.1/4369760-4369677 AUAGUAAUUGAGAGCUAUGAAGAAUUCUUUUUAUGUGGAUAUUUUAAGAAUUUCGAGCUAUCUGUGCAGUCGACCAAUUUAAAC .........(..(.............................................)(............).)......... >CP000721.1/4868650-4868568 UGUCAUAAGGAAACUUUGAUCCAUAUAUUUUAAUUGGGCACUUUAUAUAUGGUGAGUUAGUAGUGCAACCGACCUUUAUAUUU .........(....(............................................)(..........).)......... >AAFX01082705.1/413-329 AUCGAUUUCGGAUGCCUUGAUCCGACCGCUGAAUGUGGGCACUUAGGCGGCCGGGGAGCAGGUAGUGCAACCGACCGUUCCGCAC ...............(..(.....................................)(...............).)......... >AACY023761929.1/1009-1091 AUAAUUUGGUGGGCGUUGAUGUGCCCUUUGUAUCUGGUCGCUUGAGGGGUACGGAGCCAAUAGCGAAACCGCCGCCGUCAUAG ............((....................)(...............................).)............. >AJ965256.1/1260708-1260792 AAAUUAAGGGGAAGCGUUGAGCCGCUACCCAUAUGUGGUUCACUCGGAUAGCGGGGAGCUAAUAGUGAAACCGGCCCUUUAGGGG .......((....................)..(........................................).)......... >ABHE02000039.1/57574-57489 UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAAUGUGGGCACCUUAGAGCAUAUUGAGUUAGUGGUGCAACCGGCUAUGAAAUUG ...............(..(........................................).(........).)............. >CP000312.1/175590-175673 AUAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUGGAAUAUGCUGAGUUAGUGAUGCAACCGACUAUAUUUAUA ...............((.......................................)(..........).)............. >AM180355.1/4105882-4105797 UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAAUGUGGGCACCUUGGAGCAUAUUGAGUUAGUGGUGCAACCGGCUAUGAAAUUG ...............(..(........................................).(........).)............. >CP001098.1/2206138-2206055 UAUUGAAUGGGAAGCUAUGAACUCUUCUUUGUACGUGGUCACUUGAAGGAGAGGGAGCUAGUAGUGAAACCGCCCCGACCGGGG ..........(.(...................)(.....................................).).......... >AE000513.1/1919839-1919755 CUGUCGAAGAGACGCGAUGAAUCCCGCCCUGUAAUUCGGGCACCUCGGACGGGAGGAGCAAGUGGUGCGACCGGCUUUUCGUUGG .............((.............)(.......................................).)............. >AE015927.1/474745-474827 AUUUUAAGAGGAAAUUUUGAACUAUAUACUUAUUUGGGCACUUUGUAUAUAGGGAGUUAGUAGUGCAACCGACCUUGAUUAAU .......((......................).(.....................................).)......... >CP002042.1/3024809-3024724 GGGGGGUUCGGAGGCGACGAACUGUGUCACCCAAUAUGGGCACCAAGGGGCACAGGGAGCUAGUGGUGCAACCGGCCGAACACCGC .............(....(.................)(................................).).............
2		(()(R)C)C G(NG)N			39	81.2
>AAFX01078109.1/475-391 UCACCCUUCAGAGGCUUAGAUGCCUACCCCGCAACUUGGGCGCUUGGGGUACGCGGAGCCAGUAGCGCAACCGGCCGAGGGCUUC .............(..(...................)(.................(..)..........).)............. >AAWL01000006.1/67971-67888 ACUGCAAUGGGUGUGAUGAAGUCCGGACAGUAAUGUGGGCACUUAGUCCGGACCGAGCAAGUAGUGCAACCGACCAGAUGCAAA ............((............................................)(...(..).).)............. >ABSO01005747.1/296-213 GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU .............((...........................................)(...(..).).)............. >AM180355.1/4105882-4105797 UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAAUGUGGGCACCUUGGAGCAUAUUGAGUUAGUGGUGCAACCGGCUAUGAAAUUG ...............((.............................................)(.(..).).)............. >CP000359.1/298588-298670 UUCUUGUUCCGGGGCGAAGAGGCGUGUGGUGUAUCCGGGCACCUGCCACACGCGGAGCCAGUGGUGCGACCGACGAACCGUGA .....((............)(.................................(..)..................).).... >CP000923.1/1535517-1535600 AUUUUAUAAAGAGUAGAUGAAGUGAGGCUAUAUGUGGGCACUUUAUGCCUCACGGAUACAGUGGUGCAACCGGCUUUAUGUCGG ............((.............................................)(..(..).).)............. >AE001437.1/648479-648561 UAUUUGUUUGGAAACAAUGAUGAAUUUCUUUAAAUUGGGCACUUGAGAAAUUUUGAGUUAGUAGUGCAACCGACCAACGAUUA .............(.(..........................................)(...(..).).)............ >CP001825.1/388010-388096 AAUUAGCGUAGAGGCGACGAAGUCCGCUUACCUAUAUGGGCACCAUGGGAGCGGAUGGAGCCACUGGUGCAACCGGCUACUGAGAAG ............((.................................................)(.(..).).)............. >AP009389.1/2908378-2908465 GAGAUAGUGUGAAGCAGUGAUCUUGCAGCUAAUAUGGUCACUUUUUACGGCUGCAAGUGAGCUAAUAGUGAAACCGGCACACUGAUGC .............(..(............................................)(....(..).).)............. >AACY020292692.1/175-258 UCGCGAUUCGAGGGCGAUGACGCUCGUUCUGCAACAUGGGCGCUUGGAACGAGCCGAGCCAGUAGCGCAACCGAUCGGUCGACG .........((.........................)(.................(..)..........).)............ >CP000312.1/175590-175673 AUAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUGGAAUAUGCUGAGUUAGUGAUGCAACCGACUAUAUUUAUA ...............((.......................................)(..(..)....).)............. >AE015927.1/474745-474827 AUUUUAAGAGGAAAUUUUGAACUAUAUACUUAUUUGGGCACUUUGUAUAUAGGGAGUUAGUAGUGCAACCGACCUUGAUUAAU .......((.....)(...................................(..)................).)......... >AP009049.1/1160074-1160160 CAAAUUGAGGGGAACGAUGAGGUACACACUUUAAUUUGGGCAUCCUUGUGUGUAUUGGAGUUAGUGAUGCAACCGACCCUGUAUUCA ...........(.(..................................)(.............(..)....).)............. >AM180355.1/3801149-3801064 CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAAGAUAUAUGGAGUUAGUAGUGCAACCUGCUAUAAAUAUA .............((...............................................)(.(..).).)............. >CP000721.1/4868650-4868568 UGUCAUAAGGAAACUUUGAUCCAUAUAUUUUAAUUGGGCACUUUAUAUAUGGUGAGUUAGUAGUGCAACCGACCUUUAUAUUU .........((...............................................).(.(..).....).)......... >CP000721.1/4369760-4369677 AUAGUAAUUGAGAGCUAUGAAGAAUUCUUUUUAUGUGGAUAUUUUAAGAAUUUCGAGCUAUCUGUGCAGUCGACCAAUUUAAAC .........(..(.............................................)(...(..).....).)......... >CP000724.1/3560727-3560645 AAAAAUGUAGAGCAAAUGAACUGCAGGUAUACAUGGACGCCUUAAACUGCAGGGAUGUAGUGGCGUAACCGACUAACAAUAUU ...........((.....................)(...............(..)............).)............. >AACY023761929.1/1009-1091 AUAAUUUGGUGGGCGUUGAUGUGCCCUUUGUAUCUGGUCGCUUGAGGGGUACGGAGCCAAUAGCGAAACCGCCGCCGUCAUAG ............((....................)(.................(..)..........).)............. >CP001743.1/2770688-2770773 ACCAAGUUCGGAGGUGAUGAUCCGUGAUUCCCAAUCUGGGCACCAAGGGAAACGGGGAGCCAGUGGUGCAACCGGCCGAACCCAAA .........((......................).(....................(..)..............).)......... >ABVK02000002.1/96520-96604 AGGCACCUCGGAGGCGACGAAGCCUGUCCUGCAAUCUGGGCGCCUGGGACAGGUGGAGCCAGUGGCGCAACCGGCCGAGGGCGGG .........(.(................................)....(..............(..).....).)......... >AAFX01082705.1/413-329 AUCGAUUUCGGAUGCCUUGAUCCGACCGCUGAAUGUGGGCACUUAGGCGGCCGGGGAGCAGGUAGUGCAACCGACCGUUCCGCAC .............(.(.............................................)(.(..).....).)......... >ABHE02000039.1/57574-57489 UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAAUGUGGGCACCUUAGAGCAUAUUGAGUUAGUGGUGCAACCGGCUAUGAAAUUG ...............((.............................................)(.(..).).)............. >BA000016.3/197260-197343 AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUGGAAUAUGCUGAGUUAGUGAUGCAACCGACUAUAUUUAUA ..........((.......................)(.................(..)..........).)............. >CP002042.1/3024809-3024724 GGGGGGUUCGGAGGCGACGAACUGUGUCACCCAAUAUGGGCACCAAGGGGCACAGGGAGCUAGUGGUGCAACCGGCCGAACACCGC .........((........)(..........................(..).......................).)......... >AM180355.1/3306767-3306682 AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUAUGGAUAUACUGAGUCAGUGGUGCAACCGGCUAUGAAUAUA ............(..(............................................)(...(..).).)............. >AACY020292692.1/343-428 GAGGCGUCCGGAGGCGAUGACCCGCUGAUCCCCAUUUGGGCAUCAAGGGACGCGGCGAGCCAGUGAUGCAACCGGCCGGACGGCUA .........((......................).(....................(..)..............).)......... >CP001276.1/419946-420032 CGACACCCCGGAGGCGAAGAAGCGCUGCCUGAGCGUUGGGCGCCAGUGGGCAGCGUGGAGCCAGUGGCGCACCCGGCCGGGAUAUCC .............((......................)(..................(..).........).).............. >CP000721.1/2550212-2550295 AUUACAAUUGGAAGCUAUGAAGAAUUCUUUCUAAGUGGGCACUUUAAGAGUUUGGAGCUAGUUGUGCAACCGACCAAUUAAGAU .............((.............................................)(.(..).).)............. >CP000721.1/3552610-3552527 AGAACAAUUGGAAGCGAUGAAAAAUUCUCUAUAUCUGGGCACUUUGAGAAUUUGGAGCUAGUUGUGCAACCGACCAAUUAAAAC .............((.............................................)(.(..).).)............. >AAOX01000007.1/31274-31356 AAGAAUAUAGAACACUGUGAUGAGCGGUUUUUAUUUGCACUUUAAACCGCUUGGAGUGACUAGUGCAGCCGGCCAAUGAUCUA .........(.(..........)(.............................(..)..............).)......... >BA000004.3/387918-388001 AAUCAAUAGGGAAGCAACGAAGCAUAGCCUUUAUAUGGACACUUGGGUUAUGUGGAGCUACUAGUGUAACCGGCCCUCCUUUAA .............((.....................)(................(..)..........).)............. >AM180355.1/3826693-3826610 AAUAUUUUAGAAACUGAGAAGUAUAUCUUAUUAUUGGGCAUCUGGAGAUAUAUGGAGUUAGUGGUGCAACCGGCUAUGAAUAUA ...........((.....................)(........(..)....................).)............. >CP001824.1/1154935-1155018 GUGAGCGCGGAGGCGAUGACGCGCGGGCUGUAAUUUGGGCACCUCGCCCGCGCCGAGCCUGGGGUGCAACCGGCCGGCUAAGAC ......((..............)(.........................(..)...................).)......... >AE000513.1/692045-692129 AAGUGGUUUUGAAGCAGGGAAGCAUCUGACGCAUUCGGGCGCCUUGUCAGAUGUGGAGCGAGUGGCGCGACCGGCAAAGCUGUGG .............((............)(.......................(..).............).)............. >AE000513.1/1919839-1919755 CUGUCGAAGAGACGCGAUGAAUCCCGCCCUGUAAUUCGGGCACCUCGGACGGGAGGAGCAAGUGGUGCGACCGGCUUUUCGUUGG .............((.............)(....................(..)...............).)............. >CP001791.1/1643284-1643367 ACGACAAUUGGAUGCUGAGAAGAAAUGGGUACUAUCUGGGCACUUAACCAUUUUGGAGCUGCUAGUGCAACCGGCCGGAGACAU ..........((.............)(............................(..)..........).)............ >CP001098.1/2206138-2206055 UAUUGAAUGGGAAGCUAUGAACUCUUCUUUGUACGUGGUCACUUGAAGGAGAGGGAGCUAGUAGUGAAACCGCCCCGACCGGGG ..........(.(...................)(..................(..)...............).).......... >AJ965256.1/1260708-1260792 AAAUUAAGGGGAAGCGUUGAGCCGCUACCCAUAUGUGGUUCACUCGGAUAGCGGGGAGCUAAUAGUGAAACCGGCCCUUUAGGGG .......((....................)..(....................(..)................).)......... >CP001078.1/3290558-3290475 UAUAAAGUUGGAGAUUAUGAAUAGUUCUCUUUAUUUGGGCACCUUGAGAACUAGGAAUCAGUGGUGCACCCGGCCAACAAAUUA ............(...(................)(............................(..).....).).........
3		(()(R)C)C G(NG)N (.GN.)			31	64.6
>AP009389.1/2908378-2908465 GAGAUAGUGUGAAGCAGUGAUCUUGCAGCUAAUAUGGUCACUUUUUACGGCUGCAAGUGAGCUAAUAGUGAAACCGGCACACUGAUGC .............((...................(......).....................).(.(..).).)............. >AAFX01078109.1/475-391 UCACCCUUCAGAGGCUUAGAUGCCUACCCCGCAACUUGGGCGCUUGGGGUACGCGGAGCCAGUAGCGCAACCGGCCGAGGGCUUC .............(..(...(..)............)(.................(..)..........).)............. >AE000513.1/1919839-1919755 CUGUCGAAGAGACGCGAUGAAUCCCGCCCUGUAAUUCGGGCACCUCGGACGGGAGGAGCAAGUGGUGCGACCGGCUUUUCGUUGG .............((..(..).......)(....................(..)...............).)............. >CP001791.1/1643284-1643367 ACGACAAUUGGAUGCUGAGAAGAAAUGGGUACUAUCUGGGCACUUAACCAUUUUGGAGCUGCUAGUGCAACCGGCCGGAGACAU ..........((...(....)....)(............................(..)..........).)............ >CP000923.1/1535517-1535600 AUUUUAUAAAGAGUAGAUGAAGUGAGGCUAUAUGUGGGCACUUUAUGCCUCACGGAUACAGUGGUGCAACCGGCUUUAUGUCGG ............((....................(....)...................)(..(..).).)............. >AJ965256.1/1260708-1260792 AAAUUAAGGGGAAGCGUUGAGCCGCUACCCAUAUGUGGUUCACUCGGAUAGCGGGGAGCUAAUAGUGAAACCGGCCCUUUAGGGG ........((.........(..).....)(.......................(..)................).)......... >AACY023761929.1/1009-1091 AUAAUUUGGUGGGCGUUGAUGUGCCCUUUGUAUCUGGUCGCUUGAGGGGUACGGAGCCAAUAGCGAAACCGCCGCCGUCAUAG ..............(.(...........(..)..)(.................(..)..........).)............. >ABHE02000039.1/57574-57489 UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAAUGUGGGCACCUUAGAGCAUAUUGAGUUAGUGGUGCAACCGGCUAUGAAAUUG ...............((....................(....)...................)(.(..).).)............. >AP009049.1/1160074-1160160 CAAAUUGAGGGGAACGAUGAGGUACACACUUUAAUUUGGGCAUCCUUGUGUGUAUUGGAGUUAGUGAUGCAACCGACCCUGUAUUCA ...........(.(......................(..)........)(.............(..)....).)............. >CP000724.1/3560727-3560645 AAAAAUGUAGAGCAAAUGAACUGCAGGUAUACAUGGACGCCUUAAACUGCAGGGAUGUAGUGGCGUAACCGACUAACAAUAUU .............(.(.........(..)....)(................(..)............).)............. >CP000721.1/2550212-2550295 AUUACAAUUGGAAGCUAUGAAGAAUUCUUUCUAAGUGGGCACUUUAAGAGUUUGGAGCUAGUUGUGCAACCGACCAAUUAAGAU .............((.....................(....)..................)(.(..).).)............. >AAWL01000006.1/67971-67888 ACUGCAAUGGGUGUGAUGAAGUCCGGACAGUAAUGUGGGCACUUAGUCCGGACCGAGCAAGUAGUGCAACCGACCAGAUGCAAA ............((....................(......)................)(...(..).).)............. >AM180355.1/4105882-4105797 UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAAUGUGGGCACCUUGGAGCAUAUUGAGUUAGUGGUGCAACCGGCUAUGAAAUUG ...............((....................(....)...................)(.(..).).)............. >CP000721.1/4868650-4868568 UGUCAUAAGGAAACUUUGAUCCAUAUAUUUUAAUUGGGCACUUUAUAUAUGGUGAGUUAGUAGUGCAACCGACCUUUAUAUUU .........((...................(........)..................).(.(..).....).)......... >ABSO01005747.1/296-213 GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU .............((....................(....).................)(...(..).).)............. >CP000312.1/175590-175673 AUAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUGGAAUAUGCUGAGUUAGUGAUGCAACCGACUAUAUUUAUA ...............((.................(.....)...............)(..(..)....).)............. >AACY020292692.1/175-258 UCGCGAUUCGAGGGCGAUGACGCUCGUUCUGCAACAUGGGCGCUUGGAACGAGCCGAGCCAGUAGCGCAACCGAUCGGUCGACG .........((.............(...).......)(.................(..)..........).)............ >AAFX01082705.1/413-329 AUCGAUUUCGGAUGCCUUGAUCCGACCGCUGAAUGUGGGCACUUAGGCGGCCGGGGAGCAGGUAGUGCAACCGACCGUUCCGCAC .............(.(...................(....)....................)(.(..).....).)......... >CP001098.1/2206138-2206055 UAUUGAAUGGGAAGCUAUGAACUCUUCUUUGUACGUGGUCACUUGAAGGAGAGGGAGCUAGUAGUGAAACCGCCCCGACCGGGG ..........((........................(....).................).(.(..)....).).......... >CP001743.1/2770688-2770773 ACCAAGUUCGGAGGUGAUGAUCCGUGAUUCCCAAUCUGGGCACCAAGGGAAACGGGGAGCCAGUGGUGCAACCGGCCGAACCCAAA .........((..........(...).......).(....................(..)..............).)......... >AE001437.1/648479-648561 UAUUUGUUUGGAAACAAUGAUGAAUUUCUUUAAAUUGGGCACUUGAGAAAUUUUGAGUUAGUAGUGCAACCGACCAACGAUUA .............(.(..................(.....).................)(...(..).).)............ >BA000004.3/387918-388001 AAUCAAUAGGGAAGCAACGAAGCAUAGCCUUUAUAUGGACACUUGGGUUAUGUGGAGCUACUAGUGUAACCGGCCCUCCUUUAA .............(.(......(.....)......)(.................(..)..........).)............. >CP001078.1/3290558-3290475 UAUAAAGUUGGAGAUUAUGAAUAGUUCUCUUUAUUUGGGCACCUUGAGAACUAGGAAUCAGUGGUGCACCCGGCCAACAAAUUA ............(...(.....(..).......)(............................(..).....).)......... >CP000721.1/4369760-4369677 AUAGUAAUUGAGAGCUAUGAAGAAUUCUUUUUAUGUGGAUAUUUUAAGAAUUUCGAGCUAUCUGUGCAGUCGACCAAUUUAAAC .........(..(....................(......).................)(...(..).....).)......... >CP000359.1/298588-298670 UUCUUGUUCCGGGGCGAAGAGGCGUGUGGUGUAUCCGGGCACCUGCCACACGCGGAGCCAGUGGUGCGACCGACGAACCGUGA .....((.....(..).).(..................................(..)..................).).... >CP001825.1/388010-388096 AAUUAGCGUAGAGGCGACGAAGUCCGCUUACCUAUAUGGGCACCAUGGGAGCGGAUGGAGCCACUGGUGCAACCGGCUACUGAGAAG ............((....................(.........)..................)(.(..).).)............. >AM180355.1/3306767-3306682 AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUAUGGAUAUACUGAGUCAGUGGUGCAACCGGCUAUGAAUAUA ............((.......................(....)...................)(.(..).).)............. >CP001276.1/419946-420032 CGACACCCCGGAGGCGAAGAAGCGCUGCCUGAGCGUUGGGCGCCAGUGGGCAGCGUGGAGCCAGUGGCGCACCCGGCCGGGAUAUCC ..................((.........(..)....)(..................(..).........).).............. >AM180355.1/3801149-3801064 CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAAGAUAUAUGGAGUUAGUAGUGCAACCUGCUAUAAAUAUA .............((.....................(.....)...................)(.(..).).)............. >ABVK02000002.1/96520-96604 AGGCACCUCGGAGGCGACGAAGCCUGUCCUGCAAUCUGGGCGCCUGGGACAGGUGGAGCCAGUGGCGCAACCGGCCGAGGGCGGG .........((..................(..)............)...(..............(..).....).)......... >CP000721.1/3552610-3552527 AGAACAAUUGGAAGCGAUGAAAAAUUCUCUAUAUCUGGGCACUUUGAGAAUUUGGAGCUAGUUGUGCAACCGACCAAUUAAAAC .............((.................(.........).................)(.(..).).).............
4		(()(R)C)C G(NG)N (.GN.) ((G)R)C			18	37.5
>AAWL01000006.1/67971-67888 ACUGCAAUGGGUGUGAUGAAGUCCGGACAGUAAUGUGGGCACUUAGUCCGGACCGAGCAAGUAGUGCAACCGACCAGAUGCAAA ..........((((....................(......)................)(...(..).).)).).......... >CP000721.1/2550212-2550295 AUUACAAUUGGAAGCUAUGAAGAAUUCUUUCUAAGUGGGCACUUUAAGAGUUUGGAGCUAGUUGUGCAACCGACCAAUUAAGAU ..........((.((.....................(....)..................)(.(..).).)).).......... >CP001276.1/419946-420032 CGACACCCCGGAGGCGAAGAAGCGCUGCCUGAGCGUUGGGCGCCAGUGGGCAGCGUGGAGCCAGUGGCGCACCCGGCCGGGAUAUCC ..........(...(...((.........(..)....)(..................(..).........).).).).......... >AP009389.1/2908378-2908465 GAGAUAGUGUGAAGCAGUGAUCUUGCAGCUAAUAUGGUCACUUUUUACGGCUGCAAGUGAGCUAAUAGUGAAACCGGCACACUGAUGC ..........((.((....................(....)......................).(.(..).).)).).......... >ABVK02000002.1/96520-96604 AGGCACCUCGGAGGCGACGAAGCCUGUCCUGCAAUCUGGGCGCCUGGGACAGGUGGAGCCAGUGGCGCAACCGGCCGAGGGCGGG ....((...((.......(....).....................)...(..............(..).....).)...).)... >AM180355.1/3306767-3306682 AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUAUGGAUAUACUGAGUCAGUGGUGCAACCGGCUAUGAAUAUA ..........((((.......................(....)...................)(.(..).).)).).......... >CP000923.1/1535517-1535600 AUUUUAUAAAGAGUAGAUGAAGUGAGGCUAUAUGUGGGCACUUUAUGCCUCACGGAUACAGUGGUGCAACCGGCUUUAUGUCGG ..........((((....................(....)...................)(..(..).).)).).......... >AM180355.1/4105882-4105797 UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAAUGUGGGCACCUUGGAGCAUAUUGAGUUAGUGGUGCAACCGGCUAUGAAAUUG ..........(..(.((....................(....)...................)(.(..).).)).).......... >CP001825.1/388010-388096 AAUUAGCGUAGAGGCGACGAAGUCCGCUUACCUAUAUGGGCACCAUGGGAGCGGAUGGAGCCACUGGUGCAACCGGCUACUGAGAAG ..........((((....................(.........)..................)(.(..).).)).).......... >CP001098.1/2206138-2206055 UAUUGAAUGGGAAGCUAUGAACUCUUCUUUGUACGUGGUCACUUGAAGGAGAGGGAGCUAGUAGUGAAACCGCCCCGACCGGGG .....(.(..((........................(....).................).(.(..)....).)..).)..... >CP000312.1/175590-175673 AUAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUGGAAUAUGCUGAGUUAGUGAUGCAACCGACUAUAUUUAUA ..........(..(.((.................(.....)...............)(..(..)....).)).).......... >CP000724.1/3560727-3560645 AAAAAUGUAGAGCAAAUGAACUGCAGGUAUACAUGGACGCCUUAAACUGCAGGGAUGUAGUGGCGUAACCGACUAACAAUAUU .........(.(.(.(.........(..)....)(................(..)............).)).).......... >BA000004.3/387918-388001 AAUCAAUAGGGAAGCAACGAAGCAUAGCCUUUAUAUGGACACUUGGGUUAUGUGGAGCUACUAGUGUAACCGGCCCUCCUUUAA ..........((.(.(......(.....)......)(.................(..)..........).)).).......... >ABSO01005747.1/296-213 GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU ..........((.((....................(....).................)(...(..).).)).).......... >CP000721.1/3552610-3552527 AGAACAAUUGGAAGCGAUGAAAAAUUCUCUAUAUCUGGGCACUUUGAGAAUUUGGAGCUAGUUGUGCAACCGACCAAUUAAAAC ..........((.((.................(.........).................)(.(..).).)).).......... >ABHE02000039.1/57574-57489 UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAAUGUGGGCACCUUAGAGCAUAUUGAGUUAGUGGUGCAACCGGCUAUGAAAUUG ..........(..(.((....................(....)...................)(.(..).).)).).......... >AAFX01078109.1/475-391 UCACCCUUCAGAGGCUUAGAUGCCUACCCCGCAACUUGGGCGCUUGGGGUACGCGGAGCCAGUAGCGCAACCGGCCGAGGGCUUC ..........((.(..(...(..)............)(.................(..)..........).)).).......... >AE001437.1/648479-648561 UAUUUGUUUGGAAACAAUGAUGAAUUUCUUUAAAUUGGGCACUUGAGAAAUUUUGAGUUAGUAGUGCAACCGACCAACGAUUA ..........((.(.(..................(.....).................)(...(..).).)).).........

>CP001825.1/388010-388096 AAUUAGCGUAGAGGCGACGAAGUCCGCUUACCUAUAUGGGCACCAUGGGAGCGGAUGGAGCCACUGGUGCAACCGGCUACUGAGAAG ............((.................................................)(......).)............. ............((.................................................)(.(..).).)............. ............((....................(.........)..................)(.(..).).)............. ..........((((....................(.........)..................)(.(..).).)).).......... >CP000721.1/3552610-3552527 AGAACAAUUGGAAGCGAUGAAAAAUUCUCUAUAUCUGGGCACUUUGAGAAUUUGGAGCUAGUUGUGCAACCGACCAAUUAAAAC .............((.............................................)(......).)............. .............((.............................................)(.(..).).)............. .............((.................(.........).................)(.(..).).)............. ..........((.((.................(.........).................)(.(..).).)).).......... >AAWL01000006.1/67971-67888 ACUGCAAUGGGUGUGAUGAAGUCCGGACAGUAAUGUGGGCACUUAGUCCGGACCGAGCAAGUAGUGCAACCGACCAGAUGCAAA ..............(..(...................................)(.............).)............. ............((............................................)(...(..).).)............. ............((....................(......)................)(...(..).).)............. ..........((((....................(......)................)(...(..).).)).).......... >BA000004.3/387918-388001 AAUCAAUAGGGAAGCAACGAAGCAUAGCCUUUAUAUGGACACUUGGGUUAUGUGGAGCUACUAGUGUAACCGGCCCUCCUUUAA .............((.....................)(..............................).)............. .............((.....................)(................(..)..........).)............. .............(.(......(.....)......)(.................(..)..........).)............. ..........((.(.(......(.....)......)(.................(..)..........).)).).......... >CP000724.1/3560727-3560645 AAAAAUGUAGAGCAAAUGAACUGCAGGUAUACAUGGACGCCUUAAACUGCAGGGAUGUAGUGGCGUAACCGACUAACAAUAUU ...........((.....................)(...............................).)............. ...........((.....................)(...............(..)............).)............. .............(.(.........(..)....)(................(..)............).)............. .........(.(.(.(.........(..)....)(................(..)............).)).).......... >CP000721.1/2550212-2550295 AUUACAAUUGGAAGCUAUGAAGAAUUCUUUCUAAGUGGGCACUUUAAGAGUUUGGAGCUAGUUGUGCAACCGACCAAUUAAGAU .............(..(..................)(...............................).)............. .............((.............................................)(.(..).).)............. .............((.....................(....)..................)(.(..).).)............. ..........((.((.....................(....)..................)(.(..).).)).).......... >AM180355.1/3306767-3306682 AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUAUGGAUAUACUGAGUCAGUGGUGCAACCGGCUAUGAAUAUA ............(..(............................................)(........).)............. ............(..(............................................)(...(..).).)............. ............((.......................(....)...................)(.(..).).)............. ..........((((.......................(....)...................)(.(..).).)).).......... >AP009389.1/2908378-2908465 GAGAUAGUGUGAAGCAGUGAUCUUGCAGCUAAUAUGGUCACUUUUUACGGCUGCAAGUGAGCUAAUAGUGAAACCGGCACACUGAUGC .............(..(............................................)(.........).)............. .............(..(............................................)(....(..).).)............. .............((...................(......).....................).(.(..).).)............. ..........((.((....................(....)......................).(.(..).).)).).......... >ABSO01005747.1/296-213 GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU ..........(.(...............................................)(..............).)..... .............((...........................................)(...(..).).)............. .............((....................(....).................)(...(..).).)............. ..........((.((....................(....).................)(...(..).).)).).......... >ABVK02000002.1/96520-96604 AGGCACCUCGGAGGCGACGAAGCCUGUCCUGCAAUCUGGGCGCCUGGGACAGGUGGAGCCAGUGGCGCAACCGGCCGAGGGCGGG .........(.(................................)....(.......................).)......... .........(.(................................)....(..............(..).....).)......... .........((..................(..)............)...(..............(..).....).)......... ....((...((.......(....).....................)...(..............(..).....).)...).)... >CP000923.1/1535517-1535600 AUUUUAUAAAGAGUAGAUGAAGUGAGGCUAUAUGUGGGCACUUUAUGCCUCACGGAUACAGUGGUGCAACCGGCUUUAUGUCGG ...............((.......................................)..(........).)............. ............((.............................................)(..(..).).)............. ............((....................(....)...................)(..(..).).)............. ..........((((....................(....)...................)(..(..).).)).).......... >CP001276.1/419946-420032 CGACACCCCGGAGGCGAAGAAGCGCUGCCUGAGCGUUGGGCGCCAGUGGGCAGCGUGGAGCCAGUGGCGCACCCGGCCGGGAUAUCC .............((......................)(...............................).).............. .............((......................)(..................(..).........).).............. ..................((.........(..)....)(..................(..).........).).............. ..........(...(...((.........(..)....)(..................(..).........).).).).......... >AE001437.1/648479-648561 UAUUUGUUUGGAAACAAUGAUGAAUUUCUUUAAAUUGGGCACUUGAGAAAUUUUGAGUUAGUAGUGCAACCGACCAACGAUUA ............((.....................)(...............................).)............ .............(.(..........................................)(...(..).).)............ .............(.(..................(.....).................)(...(..).).)............ ..........((.(.(..................(.....).................)(...(..).).)).)......... >AAFX01078109.1/475-391 UCACCCUUCAGAGGCUUAGAUGCCUACCCCGCAACUUGGGCGCUUGGGGUACGCGGAGCCAGUAGCGCAACCGGCCGAGGGCUUC .............(..(...................)(...............................).)............. .............(..(...................)(.................(..)..........).)............. .............(..(...(..)............)(.................(..)..........).)............. ..........((.(..(...(..)............)(.................(..)..........).)).).......... >ABHE02000039.1/57574-57489 UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAAUGUGGGCACCUUAGAGCAUAUUGAGUUAGUGGUGCAACCGGCUAUGAAAUUG ...............(..(........................................).(........).)............. ...............((.............................................)(.(..).).)............. ...............((....................(....)...................)(.(..).).)............. ..........(..(.((....................(....)...................)(.(..).).)).).......... >CP000312.1/175590-175673 AUAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUGGAAUAUGCUGAGUUAGUGAUGCAACCGACUAUAUUUAUA ...............((.......................................)(..........).)............. ...............((.......................................)(..(..)....).)............. ...............((.................(.....)...............)(..(..)....).)............. ..........(..(.((.................(.....)...............)(..(..)....).)).).......... >AM180355.1/4105882-4105797 UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAAUGUGGGCACCUUGGAGCAUAUUGAGUUAGUGGUGCAACCGGCUAUGAAAUUG ...............(..(........................................).(........).)............. ...............((.............................................)(.(..).).)............. ...............((....................(....)...................)(.(..).).)............. ..........(..(.((....................(....)...................)(.(..).).)).).......... >CP001098.1/2206138-2206055 UAUUGAAUGGGAAGCUAUGAACUCUUCUUUGUACGUGGUCACUUGAAGGAGAGGGAGCUAGUAGUGAAACCGCCCCGACCGGGG ..........(.(...................)(.....................................).).......... ..........(.(...................)(..................(..)...............).).......... ..........((........................(....).................).(.(..)....).).......... .....(.(..((........................(....).................).(.(..)....).)..).)..... >AM180355.1/3801149-3801064 CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAAGAUAUAUGGAGUUAGUAGUGCAACCUGCUAUAAAUAUA .............(.(............................................)(........).)............. .............((...............................................)(.(..).).)............. .............((.....................(.....)...................)(.(..).).)............. >CP001791.1/1643284-1643367 ACGACAAUUGGAUGCUGAGAAGAAAUGGGUACUAUCUGGGCACUUAACCAUUUUGGAGCUGCUAGUGCAACCGGCCGGAGACAU .........((..............)(..........................................).)............ ..........((.............)(............................(..)..........).)............ ..........((...(....)....)(............................(..)..........).)............ >CP001078.1/3290558-3290475 UAUAAAGUUGGAGAUUAUGAAUAGUUCUCUUUAUUUGGGCACCUUGAGAACUAGGAAUCAGUGGUGCACCCGGCCAACAAAUUA ............((......................)(.............................).).............. ............(...(................)(............................(..).....).)......... ............(...(.....(..).......)(............................(..).....).)......... >AP009049.1/1160074-1160160 CAAAUUGAGGGGAACGAUGAGGUACACACUUUAAUUUGGGCAUCCUUGUGUGUAUUGGAGUUAGUGAUGCAACCGACCCUGUAUUCA ...........(.(......................)(.................................).)............. ...........(.(..................................)(.............(..)....).)............. ...........(.(......................(..)........)(.............(..)....).)............. >AACY020292692.1/175-258 UCGCGAUUCGAGGGCGAUGACGCUCGUUCUGCAACAUGGGCGCUUGGAACGAGCCGAGCCAGUAGCGCAACCGAUCGGUCGACG .........((.........................)(...............................).)............ .........((.........................)(.................(..)..........).)............ .........((.............(...).......)(.................(..)..........).)............ >CP000359.1/298588-298670 UUCUUGUUCCGGGGCGAAGAGGCGUGUGGUGUAUCCGGGCACCUGCCACACGCGGAGCCAGUGGUGCGACCGACGAACCGUGA .....((............)(.......................................................).).... .....((............)(.................................(..)..................).).... .....((.....(..).).(..................................(..)..................).).... >CP001743.1/2770688-2770773 ACCAAGUUCGGAGGUGAUGAUCCGUGAUUCCCAAUCUGGGCACCAAGGGAAACGGGGAGCCAGUGGUGCAACCGGCCGAACCCAAA .........((......................).(......................................).)......... .........((......................).(....................(..)..............).)......... .........((..........(...).......).(....................(..)..............).)......... >CP000721.1/4369760-4369677 AUAGUAAUUGAGAGCUAUGAAGAAUUCUUUUUAUGUGGAUAUUUUAAGAAUUUCGAGCUAUCUGUGCAGUCGACCAAUUUAAAC .........(..(.............................................)(............).)......... .........(..(.............................................)(...(..).....).)......... .........(..(....................(......).................)(...(..).....).)......... >CP000721.1/4868650-4868568 UGUCAUAAGGAAACUUUGAUCCAUAUAUUUUAAUUGGGCACUUUAUAUAUGGUGAGUUAGUAGUGCAACCGACCUUUAUAUUU .........(....(............................................)(..........).)......... .........((...............................................).(.(..).....).)......... .........((...................(........)..................).(.(..).....).)......... >AAFX01082705.1/413-329 AUCGAUUUCGGAUGCCUUGAUCCGACCGCUGAAUGUGGGCACUUAGGCGGCCGGGGAGCAGGUAGUGCAACCGACCGUUCCGCAC ...............(..(.....................................)(...............).)......... .............(.(.............................................)(.(..).....).)......... .............(.(...................(....)....................)(.(..).....).)......... >AACY023761929.1/1009-1091 AUAAUUUGGUGGGCGUUGAUGUGCCCUUUGUAUCUGGUCGCUUGAGGGGUACGGAGCCAAUAGCGAAACCGCCGCCGUCAUAG ............((....................)(...............................).)............. ............((....................)(.................(..)..........).)............. ..............(.(...........(..)..)(.................(..)..........).)............. >AJ965256.1/1260708-1260792 AAAUUAAGGGGAAGCGUUGAGCCGCUACCCAUAUGUGGUUCACUCGGAUAGCGGGGAGCUAAUAGUGAAACCGGCCCUUUAGGGG .......((....................)..(........................................).)......... .......((....................)..(....................(..)................).)......... ........((.........(..).....)(.......................(..)................).)......... >AE000513.1/1919839-1919755 CUGUCGAAGAGACGCGAUGAAUCCCGCCCUGUAAUUCGGGCACCUCGGACGGGAGGAGCAAGUGGUGCGACCGGCUUUUCGUUGG .............((.............)(.......................................).)............. .............((.............)(....................(..)...............).)............. .............((..(..).......)(....................(..)...............).)............. >BA000016.3/197260-197343 AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUGGAAUAUGCUGAGUUAGUGAUGCAACCGACUAUAUUUAUA ..........((.......................)(...............................).)............. ..........((.......................)(.................(..)..........).)............. >AM180355.1/3826693-3826610 AAUAUUUUAGAAACUGAGAAGUAUAUCUUAUUAUUGGGCAUCUGGAGAUAUAUGGAGUUAGUGGUGCAACCGGCUAUGAAUAUA ...........((.....................)(................................).)............. ...........((.....................)(........(..)....................).)............. >AAOX01000007.1/31274-31356 AAGAAUAUAGAACACUGUGAUGAGCGGUUUUUAUUUGCACUUUAAACCGCUUGGAGUGACUAGUGCAGCCGGCCAAUGAUCUA .........(.(..........)(...............................................).)......... .........(.(..........)(.............................(..)..............).)......... >AE000513.1/692045-692129 AAGUGGUUUUGAAGCAGGGAAGCAUCUGACGCAUUCGGGCGCCUUGUCAGAUGUGGAGCGAGUGGCGCGACCGGCAAAGCUGUGG .............((............)(........................................).)............. .............((............)(.......................(..).............).)............. >CP001824.1/1154935-1155018 GUGAGCGCGGAGGCGAUGACGCGCGGGCUGUAAUUUGGGCACCUCGCCCGCGCCGAGCCUGGGGUGCAACCGGCCGGCUAAGAC ......((..............)(................................................).)......... ......((..............)(.........................(..)...................).)......... >AACY020292692.1/343-428 GAGGCGUCCGGAGGCGAUGACCCGCUGAUCCCCAUUUGGGCAUCAAGGGACGCGGCGAGCCAGUGAUGCAACCGGCCGGACGGCUA .........((......................).(......................................).)......... .........((......................).(....................(..)..............).)......... >AE015927.1/474745-474827 AUUUUAAGAGGAAAUUUUGAACUAUAUACUUAUUUGGGCACUUUGUAUAUAGGGAGUUAGUAGUGCAACCGACCUUGAUUAAU .......((......................).(.....................................).)......... .......((.....)(...................................(..)................).)......... >CP002042.1/3024809-3024724 GGGGGGUUCGGAGGCGACGAACUGUGUCACCCAAUAUGGGCACCAAGGGGCACAGGGAGCUAGUGGUGCAACCGGCCGAACACCGC .............(....(.................)(................................).)............. .........((........)(..........................(..).......................).)......... >CP000382.1/1875256-1875172 UUUUUAAAAGGAGACAUUUGAACUAUAUACUUUAUUUGGGCACUUUGUAUAUAGGGAGUCAUUAGUGCAACCGACCUUAUUUUAU ..........((....)(...................................................).)............. >AE001437.1/3752962-3752879 UUAAGCGUUGGAGACUGUGAAGAAUUUCUUGUAUUUGGGCACCUUAGAAAUUUGGAGUUAGUGGUGCAACCUGCCAACAAUAAU ............((.....................)(...............................).)............. >CP001720.1/3973350-3973434 GAGUUUCUUGGGAACUAUGACAUCAACUCUUUAUCUGGGCAUCUUAGAGUUGAUUGAGUUAGUGAUGCAACCGACCUUGAAGAAA .............(.(...........................................)(........).)............. >BAAW01001404.1/567-484 AAUAAAUCUGGAAGUAAUGAUAAAUUCUCUUUAUUUGGGCACUUUGAGGAUUUUGAACUAGUAGUGCAACCCGCCAACAAUUAA ..........((.......................)(...............................).)............. >CP000721.1/1272636-1272718 UGUAUAUAAGGAAACUGUGAUUCGAAUAUUUACUUGGGCACUUUAUAUUCGAUGAGUUAAUAGUGCAACCGACCUUUUUAUUA ...........((.....................)(...............................).)............. >ACOM01000005.1/2090470-2090387 CAUGUAGUUGGAAACGAAGAAUAGUUCUCUCAAUCUGGGCACCUUGGGAACUAGGAGUUAGUGGUGCAACCCGCCAGCAAAUUA ................((.................)(...............................).)............. >AAFX01024083.1/557-455 CACCACUGUGGACGCUUUGAUCCGGUGUCUUGAUUUGGUCGCUUAACGUCUGGAACUUUUGACGAGGGCGCCGGGGAGCGAGUAGCGAAACCGGCCACUGGUA .............(...(.................)(....................................................).)........... >CP000721.1/2207052-2207135 ACAAAGAUUGGGAACUAUGAAGAAUUCUCUGUAUUUGGGCAUCUUGAGAAUUUAGAGUUAAUGAUGCAACCCACCAAUCAAAAC ...........((......................)(...............................).).............

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	(()(R)C)C			< 0.001		2.98

ABSO01005747.1/296-213 GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU .........1.........2.........3.........4.........5.........6.........7.........8.... 123456789012345678901234567890123456789012345678901234567890123456789012345678901234
2	G(NG)N			< 0.001		3.11

ABSO01005747.1/296-213 GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU .........1.........2.........3.........4.........5.........6.........7.........8.... 123456789012345678901234567890123456789012345678901234567890123456789012345678901234
3	((G)R)C			< 0.001		1.39

ABSO01005747.1/296-213 GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU .........1.........2.........3.........4.........5.........6.........7.........8.... 123456789012345678901234567890123456789012345678901234567890123456789012345678901234
4	(.GN.)			< 0.001		1.64

ABSO01005747.1/296-213 GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU .........1.........2.........3.........4.........5.........6.........7.........8.... 123456789012345678901234567890123456789012345678901234567890123456789012345678901234
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	(()(A)C)C			< 0.001		5.4

ABSO01005747.1/296-213 GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU GUCAAUAUCGGACGCGCGGAUGCCUCGCCUGAAAUGGGCACUUAGGGUGAGGCGGAGCGAGUAGUGCAACCGACCGACCCCAGU .........1.........2.........3.........4.........5.........6.........7.........8.... 123456789012345678901234567890123456789012345678901234567890123456789012345678901234
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).