D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major

D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences

J. Mol. Biol., 435 (2023)

mir-30 microRNA precursor (Rfam: RF00131)

Options

Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN

Rfam

D-ORB

Augmented

(CYN()G)
(.YG.().NN.)
(G()C)
(G()Y)
A(A(A))
(.NNNNR.)

100.0
100.0
100.0
100.0
100.0
100.0

(.NNNNR.)

% of positive sequence with ORB

Job*

Email*

Sequence(s)*

Obtain

One structure matching the consensus structure ORBs
Several structures containing instances of most discriminative ORBs

Up to structures per sequence

Position offset nucleotides

Job*

Email*

Wildtype sequence*

Mutant sequences

All SNPs
Submit mutant sequences

Use the mutation generator

Deep neural network:

5-fold cross-validation: 99.6 %
(± 0.221 %)

Decision tree:

5-fold cross-validation: 97.4 %
(± 3.02 %)

D-ORB structure

D-ORB structure decision tree:

5-fold cross-validation: 98.3 %
(± 2.59 %)

of AAFC03016105.1/17756-17816

AAFC03016105.1/17756-17816

UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA
(.((.(((((...(((((.((((....((......))...)))).))))).))))).)).)
.........1.........2.........3.........4.........5.........6.
1234567890123456789012345678901234567890123456789012345678901

abstract shape: `()`

					Number of sequences
	Structure	ORBs			(out of 42)	(%)
1		(CYN()G)			38	90.5
>AAQQ01060122.1/527-468 UGUAAACAUCCCCGACUGGAAGCUGUAGGACACAGCUGAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ >AAPN01319291.1/18051-18110 UGUAAACAUCCCCGACUGGAAGCUGUAAAAUACCUUCAAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ >AAVX01365666.1/262-201 UGUAAACAUCCCCGACUGGAAGCUGUAAAACAGCAGCUCCAGCUUUCAGUCCGAUGUUUGCG ........(...(......................................).)........ >AL354914.9/34109-34170 UGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUCAGAGGAGCUUUCAGUCGGAUGUUUACA .........(...(....................................).)......... >AAPN01350711.1/16343-16283 UGUAAACAUCCUUGACUGGAAGCUGGAAGGUGCCGAAGGAGCUUUCAGUCGGAUGUUUACA .........(...(...................................).)......... >CR356236.12/41533-41474 UGUAAACAUCCUUGACUGGAAGCUGGUGCACAUGAUGGAGCUUUCAGUCGGAUGUUUGCA .........(...(..................................).)......... >AL606904.12/11306-11245 UGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUGAGAGGAGCUUUCAGUCGGAUGUUUACA .........(...(....................................).)......... >AC108837.9/196937-196996 UGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ >AAEX03008842.1/69098-69041 UGUAAACAUCCCCGACUGGAAGCUGGAAGACAGCAAAGCUUUCAGUCAGAUGUUUGCU ........(...(..................................).)........ >AAWZ02018601.1/2233-2179 UGUAAACAUCCCCGACUGGAAGCUGUAAAUUUCAGCUUUCAGUCAGAUGUUUGCU ........(...(...............................).)........ >AAWR02021647.1/29439-29380 UGUAAACAUCCCCGACUGGAAGCUGUGAGACAUGGCUAAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ >AAGW02013551.1/32871-32814 UGUAAACAUCCCCGACUGGAAGCUGUAAAACAACUAAGCUUUCAGUCAGAUGUUUGCU ........(...(..................................).)........ >AF159227.7/97022-97081 UGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ >AANN01559436.1/74-14 UGUAAACAUCCUCGACUGGAAGCUGUGAACUCUCAAAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(...................................).)......... >CAAB02003142.1/36971-37033 UGUAAACAUCCUUGACUGGAAGCUGGGGUUUAAAUUGUGAAGGCUUUCAGUCGGAUGUUUACA .........(...(.....................................).)......... >AAYZ01122954.1/1089-1030 UGUAAACAUCCCCGACUGGAAGCUGUAAGAAGCGGCUAAGCUUUCAGUCAGAUGUUUGCA ........(...(....................................).)........ >AAFR03044146.1/42124-42063 UGUAAACAUCCUUGACUGGAAGCUGUAAGGUGCUUGGAGGAGCUUUCAGUCGGAUGUUUACA .........(...(....................................).)......... >AAGW02018778.1/56781-56722 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCGCAGACGGGCUUUCAGUCGGAUGUUUGCA .........(...(..................................).)......... >CAAE01014597.1/2003600-2003540 UGUAAACAUCCUUGACUGGAAGCUGGUGUUUAGUUCUGGGGCUUUCAGUCGGAUGUUUGCA .........(...(...................................).)......... >AAQR03067152.1/13148-13089 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCAUGGACGGGCUUUCAGUCGGAUGUUUGCA .........(...(..................................).)......... >AAYZ01071033.1/327-268 UGUAAACAUCCUCGACUGGAAGCUGUGACCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(..................................).)......... >AADN03002007.1/424995-424939 UGUAAACAUCCCCGACUGGAAGCUGUAGCAGCUUGAGCUUUCAGUCAGAUGUUUGCU ........(...(.................................).)........ >AF480569.1/10-70 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(...................................).)......... >AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........(...(...................................).)......... >AANH01002293.1/5342-5405 UGUAAACAUCCUUGACUGGAAGCUGUGGUUUUGGACGUCAAGGGCUUUCAGUCGGAUGUUUGCA .........(...(......................................).)......... >AAWZ02024328.1/46503-46564 UGUAAACAUCCUUGACUGGAAGCUGUGCAAGGCUCAAAGGGGCUUUCAGUCGGAUGUUUACA .........(...(....................................).)......... >AAWZ02015179.1/23146-23207 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGUAGAUGAAGCUUUCAGUCGGAUGUUUGCA .........(...(....................................).)......... >AADN03008176.1/18084-18145 UGUAAACAUCCUUGACUGGAAGCUGUGAGGUGUCAGCGGGGGCUUUCAGUCGGAUGUUUACA .........(...(....................................).)......... >AAFR03002164.1/5580-5641 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCA .........(...(....................................).)......... >AAVX01474940.1/155-214 UGUAAACAUCCUCGACUGGAAGCUGUGAGGGGCCAAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(..................................).)......... >CAAE01014785.1/265034-265091 UGUAAACAUCCCCGACUGGAAGCUGUCACUCAGCAGAGCUUUCAGUCUGAUGUUUACC ........(...(..................................).)........ >BAAE01018124.1/650-593 UGUAAACAUCCCCGACUGGAAGCUGUGUCUGCGCAGAGCUUUCAGUCUGAUGUUUGCA ........(...(..................................).)........ >BAAE01224429.1/689-751 UGUAAACAUCCUUGACUGGAAGCUGGGAUUUUGUCAGUGUGGGCUUUCAGUCGGAUGUUUGCA .........(...(.....................................).)......... >AANH01002465.1/73021-72964 UGUAAACAUCCCCGACUGGAAGCUGUCCAUCUGCAGAGCUUUCAGUCCGAUGUUUGCU ........(...(..................................).)........ >ABQF01000883.1/17684-17743 UGUAAACAUCCUACACUCUCAGCUGUGGAAACUAAGAAAGCUGGGAGAAGGCUGUUUACU .........(...(..................................).)......... >AY866282.1/409-468 UGUAAACAUCCUACACUCUCAGCUGUGGAAAGUAAGAAAGCUGGGAGAAGGCUGUUUACU .........(...(..................................).)......... >BX323874.4/7995-7933 UGUAAACAUCCCCGACUGGAAGCUGUGCUACGCGGAAAACGAGCUUUCAGUUGGAUGUUUGCU .........(...(.....................................).)......... >AAKN02041734.1/70427-70486 UGUAAACAUCCCCGACUGGAAGCUGUACAACACAGCUGAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........
2		(CYN()G) (.YG.().NN.)			32	76.2
>AAWZ02015179.1/23146-23207 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGUAGAUGAAGCUUUCAGUCGGAUGUUUGCA .........(...(.........(....(........)..).........).)......... >AAGW02018778.1/56781-56722 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCGCAGACGGGCUUUCAGUCGGAUGUUUGCA .........(...(.........(...(.......)..).........).)......... >AAQQ01060122.1/527-468 UGUAAACAUCCCCGACUGGAAGCUGUAGGACACAGCUGAGCUUUCAGUCAGAUGUUUGCU ........(...(.........(..(........)....).........).)........ >AADN03002007.1/424995-424939 UGUAAACAUCCCCGACUGGAAGCUGUAGCAGCUUGAGCUUUCAGUCAGAUGUUUGCU ........(...(.........(..(.......)..).........).)........ >CAAE01014597.1/2003600-2003540 UGUAAACAUCCUUGACUGGAAGCUGGUGUUUAGUUCUGGGGCUUUCAGUCGGAUGUUUGCA .........(...(........(..(........)....).........).)......... >AAYZ01071033.1/327-268 UGUAAACAUCCUCGACUGGAAGCUGUGACCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(.........(...(.......)..).........).)......... >AAYZ01122954.1/1089-1030 UGUAAACAUCCCCGACUGGAAGCUGUAAGAAGCGGCUAAGCUUUCAGUCAGAUGUUUGCA ........(...(.........(....(........)..).........).)........ >BAAE01018124.1/650-593 UGUAAACAUCCCCGACUGGAAGCUGUGUCUGCGCAGAGCUUUCAGUCUGAUGUUUGCA ........(...(.........(..(........)..).........).)........ >AC108837.9/196937-196996 UGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCU ........(...(.........(....(........)..).........).)........ >CAAE01014785.1/265034-265091 UGUAAACAUCCCCGACUGGAAGCUGUCACUCAGCAGAGCUUUCAGUCUGAUGUUUACC ........(...(.........(..(........)..).........).)........ >AAGW02013551.1/32871-32814 UGUAAACAUCCCCGACUGGAAGCUGUAAAACAACUAAGCUUUCAGUCAGAUGUUUGCU ........(...(.........(...(.......)..).........).)........ >AANH01002465.1/73021-72964 UGUAAACAUCCCCGACUGGAAGCUGUCCAUCUGCAGAGCUUUCAGUCCGAUGUUUGCU ........(...(.........(..(........)..).........).)........ >AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........(...(.........(...(........)..).........).)......... >BX323874.4/7995-7933 UGUAAACAUCCCCGACUGGAAGCUGUGCUACGCGGAAAACGAGCUUUCAGUUGGAUGUUUGCU .........(...(.........(...(........)....).........).)......... >AAQR03067152.1/13148-13089 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCAUGGACGGGCUUUCAGUCGGAUGUUUGCA .........(...(.........(...(.......)..).........).)......... >BAAE01224429.1/689-751 UGUAAACAUCCUUGACUGGAAGCUGGGAUUUUGUCAGUGUGGGCUUUCAGUCGGAUGUUUGCA .........(...(........(..(........)......).........).)......... >AF159227.7/97022-97081 UGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCU ........(...(.........(....(........)..).........).)........ >AF480569.1/10-70 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(.........(...(........)..).........).)......... >AAFR03044146.1/42124-42063 UGUAAACAUCCUUGACUGGAAGCUGUAAGGUGCUUGGAGGAGCUUUCAGUCGGAUGUUUACA .........(...(........(...(........)....).........).)......... >AAPN01319291.1/18051-18110 UGUAAACAUCCCCGACUGGAAGCUGUAAAAUACCUUCAAGCUUUCAGUCAGAUGUUUGCU ........(...(.........(....(........)..).........).)........ >AAWR02021647.1/29439-29380 UGUAAACAUCCCCGACUGGAAGCUGUGAGACAUGGCUAAGCUUUCAGUCAGAUGUUUGCU ........(...(.........(....(........)..).........).)........ >AANN01559436.1/74-14 UGUAAACAUCCUCGACUGGAAGCUGUGAACUCUCAAAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(.........(...(........)..).........).)......... >AANH01002293.1/5342-5405 UGUAAACAUCCUUGACUGGAAGCUGUGGUUUUGGACGUCAAGGGCUUUCAGUCGGAUGUUUGCA .........(...(.........(...(.......)......).........).)......... >AAKN02041734.1/70427-70486 UGUAAACAUCCCCGACUGGAAGCUGUACAACACAGCUGAGCUUUCAGUCAGAUGUUUGCU ........(...(.........(...(........)...).........).)........ >AADN03008176.1/18084-18145 UGUAAACAUCCUUGACUGGAAGCUGUGAGGUGUCAGCGGGGGCUUUCAGUCGGAUGUUUACA .........(...(.........(....(........)..).........).)......... >AAVX01474940.1/155-214 UGUAAACAUCCUCGACUGGAAGCUGUGAGGGGCCAAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(.........(...(.......)..).........).)......... >AAFR03002164.1/5580-5641 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCA .........(...(.........(....(........)..).........).)......... >AAEX03008842.1/69098-69041 UGUAAACAUCCCCGACUGGAAGCUGGAAGACAGCAAAGCUUUCAGUCAGAUGUUUGCU ........(...(.........(..(........)..).........).)........ >CAAB02003142.1/36971-37033 UGUAAACAUCCUUGACUGGAAGCUGGGGUUUAAAUUGUGAAGGCUUUCAGUCGGAUGUUUACA .........(...(........(...(........).....).........).)......... >AAPN01350711.1/16343-16283 UGUAAACAUCCUUGACUGGAAGCUGGAAGGUGCCGAAGGAGCUUUCAGUCGGAUGUUUACA .........(...(........(...(........)...).........).)......... >CR356236.12/41533-41474 UGUAAACAUCCUUGACUGGAAGCUGGUGCACAUGAUGGAGCUUUCAGUCGGAUGUUUGCA .........(...(........(..(........)...).........).)......... >AAWZ02024328.1/46503-46564 UGUAAACAUCCUUGACUGGAAGCUGUGCAAGGCUCAAAGGGGCUUUCAGUCGGAUGUUUACA .........(...(.........(....(........)..).........).).........
3		(CYN()G) (.YG.().NN.) (G()C)			26	61.9
>AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA (.(......(...(.........(...(........)..).........).)......).) >AC108837.9/196937-196996 UGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(.........(....(........)..).........).).....).) >AAGW02018778.1/56781-56722 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCGCAGACGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(.........(...(.......)..).........).)......).) >AAKN02041734.1/70427-70486 UGUAAACAUCCCCGACUGGAAGCUGUACAACACAGCUGAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(.........(...(........)...).........).).....).) >AAVX01474940.1/155-214 UGUAAACAUCCUCGACUGGAAGCUGUGAGGGGCCAAUGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(.........(...(.......)..).........).)......).) >CAAE01014785.1/265034-265091 UGUAAACAUCCCCGACUGGAAGCUGUCACUCAGCAGAGCUUUCAGUCUGAUGUUUACC (.(.....(...(.........(..(........)..).........).).....).) >AAYZ01122954.1/1089-1030 UGUAAACAUCCCCGACUGGAAGCUGUAAGAAGCGGCUAAGCUUUCAGUCAGAUGUUUGCA (.(.....(...(.........(....(........)..).........).).....).) >AAWZ02024328.1/46503-46564 UGUAAACAUCCUUGACUGGAAGCUGUGCAAGGCUCAAAGGGGCUUUCAGUCGGAUGUUUACA (.(......(...(.........(....(........)..).........).)......).) >AANH01002465.1/73021-72964 UGUAAACAUCCCCGACUGGAAGCUGUCCAUCUGCAGAGCUUUCAGUCCGAUGUUUGCU (.(.....(...(.........(..(........)..).........).).....).) >BAAE01018124.1/650-593 UGUAAACAUCCCCGACUGGAAGCUGUGUCUGCGCAGAGCUUUCAGUCUGAUGUUUGCA (.(.....(...(.........(..(........)..).........).).....).) >AAQR03067152.1/13148-13089 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCAUGGACGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(.........(...(.......)..).........).)......).) >AAQQ01060122.1/527-468 UGUAAACAUCCCCGACUGGAAGCUGUAGGACACAGCUGAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(.........(..(........)....).........).).....).) >BX323874.4/7995-7933 UGUAAACAUCCCCGACUGGAAGCUGUGCUACGCGGAAAACGAGCUUUCAGUUGGAUGUUUGCU (.(......(...(.........(...(........)....).........).)......).) >AF159227.7/97022-97081 UGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(.........(....(........)..).........).).....).) >AADN03008176.1/18084-18145 UGUAAACAUCCUUGACUGGAAGCUGUGAGGUGUCAGCGGGGGCUUUCAGUCGGAUGUUUACA (.(......(...(.........(....(........)..).........).)......).) >AADN03002007.1/424995-424939 UGUAAACAUCCCCGACUGGAAGCUGUAGCAGCUUGAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(.........(..(.......)..).........).).....).) >AAPN01319291.1/18051-18110 UGUAAACAUCCCCGACUGGAAGCUGUAAAAUACCUUCAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(.........(....(........)..).........).).....).) >AAYZ01071033.1/327-268 UGUAAACAUCCUCGACUGGAAGCUGUGACCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(.........(...(.......)..).........).)......).) >AAWR02021647.1/29439-29380 UGUAAACAUCCCCGACUGGAAGCUGUGAGACAUGGCUAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(.........(....(........)..).........).).....).) >AAGW02013551.1/32871-32814 UGUAAACAUCCCCGACUGGAAGCUGUAAAACAACUAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(.........(...(.......)..).........).).....).) >AANH01002293.1/5342-5405 UGUAAACAUCCUUGACUGGAAGCUGUGGUUUUGGACGUCAAGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(.........(...(.......)......).........).)......).) >AF480569.1/10-70 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(.........(...(........)..).........).)......).) >AAWZ02015179.1/23146-23207 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGUAGAUGAAGCUUUCAGUCGGAUGUUUGCA (.(......(...(.........(....(........)..).........).)......).) >AANN01559436.1/74-14 UGUAAACAUCCUCGACUGGAAGCUGUGAACUCUCAAAUGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(.........(...(........)..).........).)......).) >AAFR03002164.1/5580-5641 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(.........(....(........)..).........).)......).) >AAEX03008842.1/69098-69041 UGUAAACAUCCCCGACUGGAAGCUGGAAGACAGCAAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(.........(..(........)..).........).).....).)
4		(CYN()G) (.YG.().NN.) (G()C) (G()Y)			26	61.9
>AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA (.(......(...(...(.(...(...(........)..)...).)...).)......).) >AAQR03067152.1/13148-13089 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCAUGGACGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(...(.(...(...(.......)..)...).)...).)......).) >AF159227.7/97022-97081 UGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(....(.(..(....(........)..)..).)....).).....).) >AANN01559436.1/74-14 UGUAAACAUCCUCGACUGGAAGCUGUGAACUCUCAAAUGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(...(.(...(...(........)..)...).)...).)......).) >AAYZ01071033.1/327-268 UGUAAACAUCCUCGACUGGAAGCUGUGACCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(...(.(...(...(.......)..)...).)...).)......).) >AANH01002465.1/73021-72964 UGUAAACAUCCCCGACUGGAAGCUGUCCAUCUGCAGAGCUUUCAGUCCGAUGUUUGCU (.(.....(...(....(.(..(..(........)..)..).)....).).....).) >AANH01002293.1/5342-5405 UGUAAACAUCCUUGACUGGAAGCUGUGGUUUUGGACGUCAAGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(...(.(...(...(.......)......)...).)...).)......).) >AAYZ01122954.1/1089-1030 UGUAAACAUCCCCGACUGGAAGCUGUAAGAAGCGGCUAAGCUUUCAGUCAGAUGUUUGCA (.(.....(...(....(.(..(....(........)..)..).)....).).....).) >AAGW02018778.1/56781-56722 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCGCAGACGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(...(.(...(...(.......)..)...).)...).)......).) >AAGW02013551.1/32871-32814 UGUAAACAUCCCCGACUGGAAGCUGUAAAACAACUAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(....(.(..(...(.......)..)..).)....).).....).) >BX323874.4/7995-7933 UGUAAACAUCCCCGACUGGAAGCUGUGCUACGCGGAAAACGAGCUUUCAGUUGGAUGUUUGCU (.(......(...(...(.(...(...(........)....)...).)...).)......).) >AAWZ02024328.1/46503-46564 UGUAAACAUCCUUGACUGGAAGCUGUGCAAGGCUCAAAGGGGCUUUCAGUCGGAUGUUUACA (.(......(...(...(.(...(....(........)..)...).)...).)......).) >CAAE01014785.1/265034-265091 UGUAAACAUCCCCGACUGGAAGCUGUCACUCAGCAGAGCUUUCAGUCUGAUGUUUACC (.(.....(...(....(.(..(..(........)..)..).)....).).....).) >AAVX01474940.1/155-214 UGUAAACAUCCUCGACUGGAAGCUGUGAGGGGCCAAUGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(...(.(...(...(.......)..)...).)...).)......).) >AADN03002007.1/424995-424939 UGUAAACAUCCCCGACUGGAAGCUGUAGCAGCUUGAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(....(.(..(..(.......)..)..).)....).).....).) >AADN03008176.1/18084-18145 UGUAAACAUCCUUGACUGGAAGCUGUGAGGUGUCAGCGGGGGCUUUCAGUCGGAUGUUUACA (.(......(...(...(.(...(....(........)..)...).)...).)......).) >AAWR02021647.1/29439-29380 UGUAAACAUCCCCGACUGGAAGCUGUGAGACAUGGCUAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(....(.(..(....(........)..)..).)....).).....).) >AAKN02041734.1/70427-70486 UGUAAACAUCCCCGACUGGAAGCUGUACAACACAGCUGAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(....(.(..(...(........)...)..).)....).).....).) >AC108837.9/196937-196996 UGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(....(.(..(....(........)..)..).)....).).....).) >AAWZ02015179.1/23146-23207 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGUAGAUGAAGCUUUCAGUCGGAUGUUUGCA (.(......(...(...(.(...(....(........)..)...).)...).)......).) >AAPN01319291.1/18051-18110 UGUAAACAUCCCCGACUGGAAGCUGUAAAAUACCUUCAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(....(.(..(....(........)..)..).)....).).....).) >AAFR03002164.1/5580-5641 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(...(.(...(....(........)..)...).)...).)......).) >AAEX03008842.1/69098-69041 UGUAAACAUCCCCGACUGGAAGCUGGAAGACAGCAAAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(....(.(..(..(........)..)..).)....).).....).) >AF480569.1/10-70 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA (.(......(...(...(.(...(...(........)..)...).)...).)......).) >BAAE01018124.1/650-593 UGUAAACAUCCCCGACUGGAAGCUGUGUCUGCGCAGAGCUUUCAGUCUGAUGUUUGCA (.(.....(...(....(.(..(..(........)..)..).)....).).....).) >AAQQ01060122.1/527-468 UGUAAACAUCCCCGACUGGAAGCUGUAGGACACAGCUGAGCUUUCAGUCAGAUGUUUGCU (.(.....(...(....(.(..(..(........)....)..).)....).).....).)
5		(CYN()G) (.YG.().NN.) (G()C) (G()Y) A(A(A))			24	57.1
>AAQR03067152.1/13148-13089 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCAUGGACGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...(.......)..)...).)...).)...).)).) >AF480569.1/10-70 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...(........)..)...).)...).)...).)).) >AC108837.9/196937-196996 UGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(....(........)..)..).)....).)..).)).) >CAAE01014785.1/265034-265091 UGUAAACAUCCCCGACUGGAAGCUGUCACUCAGCAGAGCUUUCAGUCUGAUGUUUACC (.((.(..(...(....(.(..(..(........)..)..).)....).)..).)).) >AF159227.7/97022-97081 UGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(....(........)..)..).)....).)..).)).) >AAWR02021647.1/29439-29380 UGUAAACAUCCCCGACUGGAAGCUGUGAGACAUGGCUAAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(....(........)..)..).)....).)..).)).) >AAEX03008842.1/69098-69041 UGUAAACAUCCCCGACUGGAAGCUGGAAGACAGCAAAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(..(........)..)..).)....).)..).)).) >AADN03002007.1/424995-424939 UGUAAACAUCCCCGACUGGAAGCUGUAGCAGCUUGAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(..(.......)..)..).)....).)...))).) >BX323874.4/7995-7933 UGUAAACAUCCCCGACUGGAAGCUGUGCUACGCGGAAAACGAGCUUUCAGUUGGAUGUUUGCU (.((.(...(...(...(.(...(...(........)....)...).)...).)...).)).) >AAYZ01122954.1/1089-1030 UGUAAACAUCCCCGACUGGAAGCUGUAAGAAGCGGCUAAGCUUUCAGUCAGAUGUUUGCA (.((.(..(...(....(.(..(....(........)..)..).)....).)..).)).) >AAVX01474940.1/155-214 UGUAAACAUCCUCGACUGGAAGCUGUGAGGGGCCAAUGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...(.......)..)...).)...).)...).)).) >AAQQ01060122.1/527-468 UGUAAACAUCCCCGACUGGAAGCUGUAGGACACAGCUGAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(..(........)....)..).)....).)..).)).) >AANH01002293.1/5342-5405 UGUAAACAUCCUUGACUGGAAGCUGUGGUUUUGGACGUCAAGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...(.......)......)...).)...).)...).)).) >AANN01559436.1/74-14 UGUAAACAUCCUCGACUGGAAGCUGUGAACUCUCAAAUGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...(........)..)...).)...).)...).)).) >BAAE01018124.1/650-593 UGUAAACAUCCCCGACUGGAAGCUGUGUCUGCGCAGAGCUUUCAGUCUGAUGUUUGCA (.((.(..(...(....(.(..(..(........)..)..).)....).)...))).) >AANH01002465.1/73021-72964 UGUAAACAUCCCCGACUGGAAGCUGUCCAUCUGCAGAGCUUUCAGUCCGAUGUUUGCU (.((.(..(...(....(.(..(..(........)..)..).)....).)...))).) >AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...(........)..)...).)...).)...).)).) >AAWZ02015179.1/23146-23207 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGUAGAUGAAGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(....(........)..)...).)...).)...).)).) >AAGW02018778.1/56781-56722 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCGCAGACGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...(.......)..)...).)...).)...).)).) >AAKN02041734.1/70427-70486 UGUAAACAUCCCCGACUGGAAGCUGUACAACACAGCUGAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(...(........)...)..).)....).)..).)).) >AAWZ02024328.1/46503-46564 UGUAAACAUCCUUGACUGGAAGCUGUGCAAGGCUCAAAGGGGCUUUCAGUCGGAUGUUUACA (.((.(...(...(...(.(...(....(........)..)...).)...).)...).)).) >AAYZ01071033.1/327-268 UGUAAACAUCCUCGACUGGAAGCUGUGACCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...(.......)..)...).)...).)...).)).) >AADN03008176.1/18084-18145 UGUAAACAUCCUUGACUGGAAGCUGUGAGGUGUCAGCGGGGGCUUUCAGUCGGAUGUUUACA (.((.(...(...(...(.(...(....(........)..)...).)...).)...).)).) >AAFR03002164.1/5580-5641 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(....(........)..)...).)...).)...).)).)
6		(CYN()G) (.YG.().NN.) (G()C) (G()Y) A(A(A)) (.NNNNR.)			22	52.4
>AAQR03067152.1/13148-13089 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCAUGGACGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...((.....))..)...).)...).)...).)).) >AAKN02041734.1/70427-70486 UGUAAACAUCCCCGACUGGAAGCUGUACAACACAGCUGAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(...((......))...)..).)....).)..).)).) >AAYZ01122954.1/1089-1030 UGUAAACAUCCCCGACUGGAAGCUGUAAGAAGCGGCUAAGCUUUCAGUCAGAUGUUUGCA (.((.(..(...(....(.(..(....((......))..)..).)....).)..).)).) >AC108837.9/196937-196996 UGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(....((......))..)..).)....).)..).)).) >AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(..(..((.........))..)..).)...).)...).)).) >AAFR03002164.1/5580-5641 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(....((......))..)...).)...).)...).)).) >AF159227.7/97022-97081 UGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(....((......))..)..).)....).)..).)).) >AAEX03008842.1/69098-69041 UGUAAACAUCCCCGACUGGAAGCUGGAAGACAGCAAAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(..((......))..)..).)....).)..).)).) >AAWR02021647.1/29439-29380 UGUAAACAUCCCCGACUGGAAGCUGUGAGACAUGGCUAAGCUUUCAGUCAGAUGUUUGCU (.((.(..(...(....(.(..(....((......))..)..).)....).)..).)).) >AF480569.1/10-70 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...((......))..)...).)...).)...).)).) >AAWZ02015179.1/23146-23207 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGUAGAUGAAGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(....((......))..)...).)...).)...).)).) >AANH01002465.1/73021-72964 UGUAAACAUCCCCGACUGGAAGCUGUCCAUCUGCAGAGCUUUCAGUCCGAUGUUUGCU (.((.(..(...(....(.(..(..((......))..)..).)....).)...))).) >AAVX01474940.1/155-214 UGUAAACAUCCUCGACUGGAAGCUGUGAGGGGCCAAUGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(..(..((.......))...)..).)...).)...).)).) >AAWZ02024328.1/46503-46564 UGUAAACAUCCUUGACUGGAAGCUGUGCAAGGCUCAAAGGGGCUUUCAGUCGGAUGUUUACA (.((.(...(...(...(.(..(....((........))..)..).)...).)...).)).) >AANN01559436.1/74-14 UGUAAACAUCCUCGACUGGAAGCUGUGAACUCUCAAAUGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...((......))..)...).)...).)...).)).) >BX323874.4/7995-7933 UGUAAACAUCCCCGACUGGAAGCUGUGCUACGCGGAAAACGAGCUUUCAGUUGGAUGUUUGCU (.((.(...(...(...(.(...(...((......))....)...).)...).)...).)).) >BAAE01018124.1/650-593 UGUAAACAUCCCCGACUGGAAGCUGUGUCUGCGCAGAGCUUUCAGUCUGAUGUUUGCA (.((.(..(...(....(.(..(..((......))..)..).)....).)...))).) >AAYZ01071033.1/327-268 UGUAAACAUCCUCGACUGGAAGCUGUGACCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...((.....))..)...).)...).)...).)).) >AANH01002293.1/5342-5405 UGUAAACAUCCUUGACUGGAAGCUGUGGUUUUGGACGUCAAGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(...(...((.....))......)...).)...).)...).)).) >AADN03008176.1/18084-18145 UGUAAACAUCCUUGACUGGAAGCUGUGAGGUGUCAGCGGGGGCUUUCAGUCGGAUGUUUACA (.((.(...(...(...(.(...(....((......))..)...).)...).)...).)).) >CAAE01014785.1/265034-265091 UGUAAACAUCCCCGACUGGAAGCUGUCACUCAGCAGAGCUUUCAGUCUGAUGUUUACC (.((.(..(...(....(.(..(..((......))..)..).)....).)..).)).) >AAGW02018778.1/56781-56722 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCGCAGACGGGCUUUCAGUCGGAUGUUUGCA (.((.(...(...(...(.(..(...((.......))..)..).)...).)...).)).)

>AC108837.9/196937-196996 UGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ ........(...(.........(....(........)..).........).)........ (.(.....(...(.........(....(........)..).........).).....).) (.(.....(...(....(.(..(....(........)..)..).)....).).....).) (.((.(..(...(....(.(..(....(........)..)..).)....).)..).)).) (.((.(..(...(....(.(..(....((......))..)..).)....).)..).)).) >AAEX03008842.1/69098-69041 UGUAAACAUCCCCGACUGGAAGCUGGAAGACAGCAAAGCUUUCAGUCAGAUGUUUGCU ........(...(..................................).)........ ........(...(.........(..(........)..).........).)........ (.(.....(...(.........(..(........)..).........).).....).) (.(.....(...(....(.(..(..(........)..)..).)....).).....).) (.((.(..(...(....(.(..(..(........)..)..).)....).)..).)).) (.((.(..(...(....(.(..(..((......))..)..).)....).)..).)).) >AAWR02021647.1/29439-29380 UGUAAACAUCCCCGACUGGAAGCUGUGAGACAUGGCUAAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ ........(...(.........(....(........)..).........).)........ (.(.....(...(.........(....(........)..).........).).....).) (.(.....(...(....(.(..(....(........)..)..).)....).).....).) (.((.(..(...(....(.(..(....(........)..)..).)....).)..).)).) (.((.(..(...(....(.(..(....((......))..)..).)....).)..).)).) >AF159227.7/97022-97081 UGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ ........(...(.........(....(........)..).........).)........ (.(.....(...(.........(....(........)..).........).).....).) (.(.....(...(....(.(..(....(........)..)..).)....).).....).) (.((.(..(...(....(.(..(....(........)..)..).)....).)..).)).) (.((.(..(...(....(.(..(....((......))..)..).)....).)..).)).) >AANN01559436.1/74-14 UGUAAACAUCCUCGACUGGAAGCUGUGAACUCUCAAAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(...................................).)......... .........(...(.........(...(........)..).........).)......... (.(......(...(.........(...(........)..).........).)......).) (.(......(...(...(.(...(...(........)..)...).)...).)......).) (.((.(...(...(...(.(...(...(........)..)...).)...).)...).)).) (.((.(...(...(...(.(...(...((......))..)...).)...).)...).)).) >AAYZ01122954.1/1089-1030 UGUAAACAUCCCCGACUGGAAGCUGUAAGAAGCGGCUAAGCUUUCAGUCAGAUGUUUGCA ........(...(....................................).)........ ........(...(.........(....(........)..).........).)........ (.(.....(...(.........(....(........)..).........).).....).) (.(.....(...(....(.(..(....(........)..)..).)....).).....).) (.((.(..(...(....(.(..(....(........)..)..).)....).)..).)).) (.((.(..(...(....(.(..(....((......))..)..).)....).)..).)).) >AAGW02018778.1/56781-56722 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCGCAGACGGGCUUUCAGUCGGAUGUUUGCA .........(...(..................................).)......... .........(...(.........(...(.......)..).........).)......... (.(......(...(.........(...(.......)..).........).)......).) (.(......(...(...(.(...(...(.......)..)...).)...).)......).) (.((.(...(...(...(.(...(...(.......)..)...).)...).)...).)).) (.((.(...(...(...(.(..(...((.......))..)..).)...).)...).)).) >AAQR03067152.1/13148-13089 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCAUGGACGGGCUUUCAGUCGGAUGUUUGCA .........(...(..................................).)......... .........(...(.........(...(.......)..).........).)......... (.(......(...(.........(...(.......)..).........).)......).) (.(......(...(...(.(...(...(.......)..)...).)...).)......).) (.((.(...(...(...(.(...(...(.......)..)...).)...).)...).)).) (.((.(...(...(...(.(...(...((.....))..)...).)...).)...).)).) >AAYZ01071033.1/327-268 UGUAAACAUCCUCGACUGGAAGCUGUGACCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(..................................).)......... .........(...(.........(...(.......)..).........).)......... (.(......(...(.........(...(.......)..).........).)......).) (.(......(...(...(.(...(...(.......)..)...).)...).)......).) (.((.(...(...(...(.(...(...(.......)..)...).)...).)...).)).) (.((.(...(...(...(.(...(...((.....))..)...).)...).)...).)).) >AF480569.1/10-70 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAGAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(...................................).)......... .........(...(.........(...(........)..).........).)......... (.(......(...(.........(...(........)..).........).)......).) (.(......(...(...(.(...(...(........)..)...).)...).)......).) (.((.(...(...(...(.(...(...(........)..)...).)...).)...).)).) (.((.(...(...(...(.(...(...((......))..)...).)...).)...).)).) >AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........(...(...................................).)......... .........(...(.........(...(........)..).........).)......... (.(......(...(.........(...(........)..).........).)......).) (.(......(...(...(.(...(...(........)..)...).)...).)......).) (.((.(...(...(...(.(...(...(........)..)...).)...).)...).)).) (.((.(...(...(...(.(..(..((.........))..)..).)...).)...).)).) >AANH01002293.1/5342-5405 UGUAAACAUCCUUGACUGGAAGCUGUGGUUUUGGACGUCAAGGGCUUUCAGUCGGAUGUUUGCA .........(...(......................................).)......... .........(...(.........(...(.......)......).........).)......... (.(......(...(.........(...(.......)......).........).)......).) (.(......(...(...(.(...(...(.......)......)...).)...).)......).) (.((.(...(...(...(.(...(...(.......)......)...).)...).)...).)).) (.((.(...(...(...(.(...(...((.....))......)...).)...).)...).)).) >AAWZ02024328.1/46503-46564 UGUAAACAUCCUUGACUGGAAGCUGUGCAAGGCUCAAAGGGGCUUUCAGUCGGAUGUUUACA .........(...(....................................).)......... .........(...(.........(....(........)..).........).)......... (.(......(...(.........(....(........)..).........).)......).) (.(......(...(...(.(...(....(........)..)...).)...).)......).) (.((.(...(...(...(.(...(....(........)..)...).)...).)...).)).) (.((.(...(...(...(.(..(....((........))..)..).)...).)...).)).) >AAWZ02015179.1/23146-23207 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGUAGAUGAAGCUUUCAGUCGGAUGUUUGCA .........(...(....................................).)......... .........(...(.........(....(........)..).........).)......... (.(......(...(.........(....(........)..).........).)......).) (.(......(...(...(.(...(....(........)..)...).)...).)......).) (.((.(...(...(...(.(...(....(........)..)...).)...).)...).)).) (.((.(...(...(...(.(...(....((......))..)...).)...).)...).)).) >AADN03008176.1/18084-18145 UGUAAACAUCCUUGACUGGAAGCUGUGAGGUGUCAGCGGGGGCUUUCAGUCGGAUGUUUACA .........(...(....................................).)......... .........(...(.........(....(........)..).........).)......... (.(......(...(.........(....(........)..).........).)......).) (.(......(...(...(.(...(....(........)..)...).)...).)......).) (.((.(...(...(...(.(...(....(........)..)...).)...).)...).)).) (.((.(...(...(...(.(...(....((......))..)...).)...).)...).)).) >AAFR03002164.1/5580-5641 UGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCA .........(...(....................................).)......... .........(...(.........(....(........)..).........).)......... (.(......(...(.........(....(........)..).........).)......).) (.(......(...(...(.(...(....(........)..)...).)...).)......).) (.((.(...(...(...(.(...(....(........)..)...).)...).)...).)).) (.((.(...(...(...(.(...(....((......))..)...).)...).)...).)).) >AAVX01474940.1/155-214 UGUAAACAUCCUCGACUGGAAGCUGUGAGGGGCCAAUGGGCUUUCAGUCGGAUGUUUGCA .........(...(..................................).)......... .........(...(.........(...(.......)..).........).)......... (.(......(...(.........(...(.......)..).........).)......).) (.(......(...(...(.(...(...(.......)..)...).)...).)......).) (.((.(...(...(...(.(...(...(.......)..)...).)...).)...).)).) (.((.(...(...(...(.(..(..((.......))...)..).)...).)...).)).) >CAAE01014785.1/265034-265091 UGUAAACAUCCCCGACUGGAAGCUGUCACUCAGCAGAGCUUUCAGUCUGAUGUUUACC ........(...(..................................).)........ ........(...(.........(..(........)..).........).)........ (.(.....(...(.........(..(........)..).........).).....).) (.(.....(...(....(.(..(..(........)..)..).)....).).....).) (.((.(..(...(....(.(..(..(........)..)..).)....).)..).)).) (.((.(..(...(....(.(..(..((......))..)..).)....).)..).)).) >BAAE01018124.1/650-593 UGUAAACAUCCCCGACUGGAAGCUGUGUCUGCGCAGAGCUUUCAGUCUGAUGUUUGCA ........(...(..................................).)........ ........(...(.........(..(........)..).........).)........ (.(.....(...(.........(..(........)..).........).).....).) (.(.....(...(....(.(..(..(........)..)..).)....).).....).) (.((.(..(...(....(.(..(..(........)..)..).)....).)...))).) (.((.(..(...(....(.(..(..((......))..)..).)....).)...))).) >AANH01002465.1/73021-72964 UGUAAACAUCCCCGACUGGAAGCUGUCCAUCUGCAGAGCUUUCAGUCCGAUGUUUGCU ........(...(..................................).)........ ........(...(.........(..(........)..).........).)........ (.(.....(...(.........(..(........)..).........).).....).) (.(.....(...(....(.(..(..(........)..)..).)....).).....).) (.((.(..(...(....(.(..(..(........)..)..).)....).)...))).) (.((.(..(...(....(.(..(..((......))..)..).)....).)...))).) >BX323874.4/7995-7933 UGUAAACAUCCCCGACUGGAAGCUGUGCUACGCGGAAAACGAGCUUUCAGUUGGAUGUUUGCU .........(...(.....................................).)......... .........(...(.........(...(........)....).........).)......... (.(......(...(.........(...(........)....).........).)......).) (.(......(...(...(.(...(...(........)....)...).)...).)......).) (.((.(...(...(...(.(...(...(........)....)...).)...).)...).)).) (.((.(...(...(...(.(...(...((......))....)...).)...).)...).)).) >AAKN02041734.1/70427-70486 UGUAAACAUCCCCGACUGGAAGCUGUACAACACAGCUGAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ ........(...(.........(...(........)...).........).)........ (.(.....(...(.........(...(........)...).........).).....).) (.(.....(...(....(.(..(...(........)...)..).)....).).....).) (.((.(..(...(....(.(..(...(........)...)..).)....).)..).)).) (.((.(..(...(....(.(..(...((......))...)..).)....).)..).)).) >AAQQ01060122.1/527-468 UGUAAACAUCCCCGACUGGAAGCUGUAGGACACAGCUGAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ ........(...(.........(..(........)....).........).)........ (.(.....(...(.........(..(........)....).........).).....).) (.(.....(...(....(.(..(..(........)....)..).)....).).....).) (.((.(..(...(....(.(..(..(........)....)..).)....).)..).)).) >AADN03002007.1/424995-424939 UGUAAACAUCCCCGACUGGAAGCUGUAGCAGCUUGAGCUUUCAGUCAGAUGUUUGCU ........(...(.................................).)........ ........(...(.........(..(.......)..).........).)........ (.(.....(...(.........(..(.......)..).........).).....).) (.(.....(...(....(.(..(..(.......)..)..).)....).).....).) (.((.(..(...(....(.(..(..(.......)..)..).)....).)...))).) >AAPN01319291.1/18051-18110 UGUAAACAUCCCCGACUGGAAGCUGUAAAAUACCUUCAAGCUUUCAGUCAGAUGUUUGCU ........(...(....................................).)........ ........(...(.........(....(........)..).........).)........ (.(.....(...(.........(....(........)..).........).).....).) (.(.....(...(....(.(..(....(........)..)..).)....).).....).) >AAGW02013551.1/32871-32814 UGUAAACAUCCCCGACUGGAAGCUGUAAAACAACUAAGCUUUCAGUCAGAUGUUUGCU ........(...(..................................).)........ ........(...(.........(...(.......)..).........).)........ (.(.....(...(.........(...(.......)..).........).).....).) (.(.....(...(....(.(..(...(.......)..)..).)....).).....).) >AAPN01350711.1/16343-16283 UGUAAACAUCCUUGACUGGAAGCUGGAAGGUGCCGAAGGAGCUUUCAGUCGGAUGUUUACA .........(...(...................................).)......... .........(...(........(...(........)...).........).)......... >CR356236.12/41533-41474 UGUAAACAUCCUUGACUGGAAGCUGGUGCACAUGAUGGAGCUUUCAGUCGGAUGUUUGCA .........(...(..................................).)......... .........(...(........(..(........)...).........).)......... >CAAB02003142.1/36971-37033 UGUAAACAUCCUUGACUGGAAGCUGGGGUUUAAAUUGUGAAGGCUUUCAGUCGGAUGUUUACA .........(...(.....................................).)......... .........(...(........(...(........).....).........).)......... >AAFR03044146.1/42124-42063 UGUAAACAUCCUUGACUGGAAGCUGUAAGGUGCUUGGAGGAGCUUUCAGUCGGAUGUUUACA .........(...(....................................).)......... .........(...(........(...(........)....).........).)......... >CAAE01014597.1/2003600-2003540 UGUAAACAUCCUUGACUGGAAGCUGGUGUUUAGUUCUGGGGCUUUCAGUCGGAUGUUUGCA .........(...(...................................).)......... .........(...(........(..(........)....).........).)......... >BAAE01224429.1/689-751 UGUAAACAUCCUUGACUGGAAGCUGGGAUUUUGUCAGUGUGGGCUUUCAGUCGGAUGUUUGCA .........(...(.....................................).)......... .........(...(........(..(........)......).........).)......... >AAVX01365666.1/262-201 UGUAAACAUCCCCGACUGGAAGCUGUAAAACAGCAGCUCCAGCUUUCAGUCCGAUGUUUGCG ........(...(......................................).)........ >AL354914.9/34109-34170 UGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUCAGAGGAGCUUUCAGUCGGAUGUUUACA .........(...(....................................).)......... >AL606904.12/11306-11245 UGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUGAGAGGAGCUUUCAGUCGGAUGUUUACA .........(...(....................................).)......... >AAWZ02018601.1/2233-2179 UGUAAACAUCCCCGACUGGAAGCUGUAAAUUUCAGCUUUCAGUCAGAUGUUUGCU ........(...(...............................).)........ >ABQF01000883.1/17684-17743 UGUAAACAUCCUACACUCUCAGCUGUGGAAACUAAGAAAGCUGGGAGAAGGCUGUUUACU .........(...(..................................).)......... >AY866282.1/409-468 UGUAAACAUCCUACACUCUCAGCUGUGGAAAGUAAGAAAGCUGGGAGAAGGCUGUUUACU .........(...(..................................).).........

	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio
1	(CYN()G)			< 0.001		182

AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........1.........2.........3.........4.........5.........6. 1234567890123456789012345678901234567890123456789012345678901
2	(.YG.().NN.)			< 0.001		13.8

AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........1.........2.........3.........4.........5.........6. 1234567890123456789012345678901234567890123456789012345678901
3	(G()C)			< 0.001		14.3

AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........1.........2.........3.........4.........5.........6. 1234567890123456789012345678901234567890123456789012345678901
4	(G()Y)			< 0.001		6.21

AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........1.........2.........3.........4.........5.........6. 1234567890123456789012345678901234567890123456789012345678901
5	A(A(A))			< 0.001		2.15

AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........1.........2.........3.........4.........5.........6. 1234567890123456789012345678901234567890123456789012345678901
6	(.NNNNR.)			< 0.001		2.43

AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........1.........2.........3.........4.........5.........6. 1234567890123456789012345678901234567890123456789012345678901
	ORB			p-value	ORB frequency (per structure per nucleotide)	Means ratio

	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio
1	(CYN()G)			< 0.001		182

AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........1.........2.........3.........4.........5.........6. 1234567890123456789012345678901234567890123456789012345678901
2	G(U(A))			< 0.001		5.43

AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........1.........2.........3.........4.........5.........6. 1234567890123456789012345678901234567890123456789012345678901
3	C(A(U))			< 0.001		0.845

AAFC03016105.1/17756-17816 UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA UGUAAACAUCCUCGACUGGAAGCUGUGAGGCUGCAGAAAGGCUUUCAGUCGGAUGUUUGCA .........1.........2.........3.........4.........5.........6. 1234567890123456789012345678901234567890123456789012345678901
	NCM			p-value	NCM frequency (per structure per nucleotide)	Means ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).