D-ORB

The Overrepresented RNA Blocks

M.J. Dupont, F. Major
D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences
J. Mol. Biol., 435 (2023)

PreQ1-III riboswitch   (Rfam: RF02680)

Seed sequences
All NCMs (CSV file) (all) positive sequences (all) negative sequences (random) (training) positive sequences (training) negative sequences (testing) positive sequences (testing) negative sequences 

Options
Negatives sequences: Random sequences of similar lengths
ORBs positions sequence: Best consensus structure-matching sequence
Motifs: 162,498 motifs on the alphabet ACGURYN
Rfam
D-ORB
Augmented
U(GGC)G
C(GCY)G
(CUC())
(()(U)C)A
Y(RR)C
((G)Y)G
G(G(A))
((G)GA)G
G(G(C))
100.0
100.0
100.0
100.0
100.0
100.0
93.3
100.0
100.0
U(GGC)G
C(GCY)G
(CUC())
(()(U)C)A
Y(RR)C
((G)Y)G
((G)GA)G

% of positive sequence with ORB





Deep neural network:

5-fold cross-validation: 99.9 %
(± 0.056 %)
Decision tree:

5-fold cross-validation: 96.6 %
(± 6.69 %)
D-ORB structure
D-ORB structure decision tree:

5-fold cross-validation: 100 %
(± 0 %)
of FP929045.1/1765647-1765748
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
((((..))))(.((((((((...(((((((((((..))..)))))))))))).((((((((((.((...)).))))))).))).))))))...((...)..)
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012

abstract shape: ()(()())()

Number of sequences
Structure ORBs (out of 15) (%)
1 U(GGC)G
 15 100.0
>FP929046.1/562024-562125
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCCACUCGAGCGGCGCUGGGCAAAACCCACAGGAGCUGGCGGUUCCUGUGCGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)................................
>ADJS01009939.1/10976-11077
GAGCAACUUAGGAUUUUAGGCUCCGCCGUCUCCCCUGCGGGAGGCGGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGCGGUCAAAAUCUAUCCGCCGGAG
................................................................(...).................................
>BABA01026116.1/736-636
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCUGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)...............................
>BAAZ01007046.1/1247-1147
GCAACUUAGGAUUUUAGGCUCCCCGUGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGUGCGGUCAAAAUCAAACCGCUGGAG
................................................................(...)................................
>ADJT01005830.1/328-228
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCUGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
................................................................(...)................................
>BABD01012433.1/319-419
GAGAAACUUAGGAUUUUAGGCUCCGCUGCCGGCUGCUGGUCGGCAGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGCGUGGUCAAAAUCUAUCCGCCGGAG
...............................................................(...).................................
>FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)................................
>BAAU01020333.1/1-83
GGCUCCGCUGUCGGCUGCUGGUCGGCAGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGUGGUCAAAAUCUAUCCGCCGGAG
.............................................(...).................................
>ADJT01007369.1/6381-6474
GAGCAACUUAGGAUUUUAGGCUCCGCCUGGUUUUCAGGCGCAAACCCACCCAAGCCUGGCGGUCUUGGGCGCGGUCAAAAUCUAUCCGCCGGAG
........................................................(...).................................
>ACBY02000013.1/114529-114434
GAGCAACUUAGGAUUUUAGGCUCCGCCGCAGCUUCCGCGGCGCAAACCGGUGUCAGGCUGGCGGUCUGGCAUGCGGUCAAAAUCUAUCCGCCGGAG
..........................................................(...).................................
>ADJS01012726.1/612-517
GAGCAACUUAGGAUUUUAGGCUCCACCGCGGCUUGCUGCGGUGCAAACCCCGCAAGCCUGGCGGUCUUGCGCGCGGUCAAAAUCUAUCCGCCGGAG
..........................................................(...).................................
>BABG01013292.1/257-357
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCCGGGCCAAACCCACAGGGGCUGGCGGUCCUGUGCGGUCAAAAUCUUUCCGCUGGAG
.................................................................(...)...............................
>BAAY01002983.1/1264-1163
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGUGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)................................
>BABA01010993.1/1076-1176
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAUCCCGCUGGAG
.................................................................(...)...............................
>BAAY01013224.1/926-826
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
................................................................(...)................................
2 U(GGC)G
C(GCY)G
 15 100.0
>ADJS01009939.1/10976-11077
GAGCAACUUAGGAUUUUAGGCUCCGCCGUCUCCCCUGCGGGAGGCGGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGCGGUCAAAAUCUAUCCGCCGGAG
................................................................(...).........................(...)...
>BAAZ01007046.1/1247-1147
GCAACUUAGGAUUUUAGGCUCCCCGUGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGUGCGGUCAAAAUCAAACCGCUGGAG
................................................................(...)........................(...)...
>ADJT01007369.1/6381-6474
GAGCAACUUAGGAUUUUAGGCUCCGCCUGGUUUUCAGGCGCAAACCCACCCAAGCCUGGCGGUCUUGGGCGCGGUCAAAAUCUAUCCGCCGGAG
........................................................(...).........................(...)...
>BAAY01013224.1/926-826
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
................................................................(...)........................(...)...
>ADJT01005830.1/328-228
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCUGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
................................................................(...)........................(...)...
>BAAU01020333.1/1-83
GGCUCCGCUGUCGGCUGCUGGUCGGCAGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGUGGUCAAAAUCUAUCCGCCGGAG
.............................................(...).........................(...)...
>FP929046.1/562024-562125
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCCACUCGAGCGGCGCUGGGCAAAACCCACAGGAGCUGGCGGUUCCUGUGCGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)........................(...)...
>BABD01012433.1/319-419
GAGAAACUUAGGAUUUUAGGCUCCGCUGCCGGCUGCUGGUCGGCAGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGCGUGGUCAAAAUCUAUCCGCCGGAG
...............................................................(...).........................(...)...
>BABA01010993.1/1076-1176
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAUCCCGCUGGAG
.................................................................(...).......................(...)...
>BABA01026116.1/736-636
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCUGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAAACCGCUGGAG
.................................................................(...).......................(...)...
>BAAY01002983.1/1264-1163
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGUGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)........................(...)...
>ADJS01012726.1/612-517
GAGCAACUUAGGAUUUUAGGCUCCACCGCGGCUUGCUGCGGUGCAAACCCCGCAAGCCUGGCGGUCUUGCGCGCGGUCAAAAUCUAUCCGCCGGAG
..........................................................(...).........................(...)...
>ACBY02000013.1/114529-114434
GAGCAACUUAGGAUUUUAGGCUCCGCCGCAGCUUCCGCGGCGCAAACCGGUGUCAGGCUGGCGGUCUGGCAUGCGGUCAAAAUCUAUCCGCCGGAG
..........................................................(...).........................(...)...
>BABG01013292.1/257-357
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCCGGGCCAAACCCACAGGGGCUGGCGGUCCUGUGCGGUCAAAAUCUUUCCGCUGGAG
.................................................................(...).......................(...)...
>FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)........................(...)...
3 U(GGC)G
C(GCY)G
(CUC())
 14 93.3
>ADJS01012726.1/612-517
GAGCAACUUAGGAUUUUAGGCUCCACCGCGGCUUGCUGCGGUGCAAACCCCGCAAGCCUGGCGGUCUUGCGCGCGGUCAAAAUCUAUCCGCCGGAG
...................(...(..................))..............(...).........................(...)...
>FP929046.1/562024-562125
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCCACUCGAGCGGCGCUGGGCAAAACCCACAGGAGCUGGCGGUUCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...................(...(........................))...............(...)........................(...)...
>BAAU01020333.1/1-83
GGCUCCGCUGUCGGCUGCUGGUCGGCAGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGUGGUCAAAAUCUAUCCGCCGGAG
.(...(.......................))..............(...).........................(...)...
>FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................(...(........................))...............(...)........................(...)...
>BABA01010993.1/1076-1176
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAUCCCGCUGGAG
...................(...(........................))...............(...).......................(...)...
>ACBY02000013.1/114529-114434
GAGCAACUUAGGAUUUUAGGCUCCGCCGCAGCUUCCGCGGCGCAAACCGGUGUCAGGCUGGCGGUCUGGCAUGCGGUCAAAAUCUAUCCGCCGGAG
...................(...(.................))...............(...).........................(...)...
>BABD01012433.1/319-419
GAGAAACUUAGGAUUUUAGGCUCCGCUGCCGGCUGCUGGUCGGCAGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGCGUGGUCAAAAUCUAUCCGCCGGAG
...................(...(.......................))..............(...).........................(...)...
>BABA01026116.1/736-636
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCUGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...................(...(........................))...............(...).......................(...)...
>BAAY01002983.1/1264-1163
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGUGGUCAAAAUCAAACCGCUGGAG
...................(...(........................))...............(...)........................(...)...
>ADJS01009939.1/10976-11077
GAGCAACUUAGGAUUUUAGGCUCCGCCGUCUCCCCUGCGGGAGGCGGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGCGGUCAAAAUCUAUCCGCCGGAG
...................(...(........................))..............(...).........................(...)...
>BAAZ01007046.1/1247-1147
GCAACUUAGGAUUUUAGGCUCCCCGUGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGUGCGGUCAAAAUCAAACCGCUGGAG
.................(...(.........................))...............(...)........................(...)...
>BAAY01013224.1/926-826
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
...................(...(........................))..............(...)........................(...)...
>ADJT01005830.1/328-228
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCUGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
...................(...(........................))..............(...)........................(...)...
>BABG01013292.1/257-357
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCCGGGCCAAACCCACAGGGGCUGGCGGUCCUGUGCGGUCAAAAUCUUUCCGCUGGAG
...................(...(........................))...............(...).......................(...)...
4 U(GGC)G
C(GCY)G
(CUC())
(()(U)C)A
 11 73.3
>FP929046.1/562024-562125
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCCACUCGAGCGGCGCUGGGCAAAACCCACAGGAGCUGGCGGUUCCUGUGCGGUCAAAAUCAAACCGCUGGAG
................((.(...(........................)).).(...........(...)............).).........(...)...
>ADJS01009939.1/10976-11077
GAGCAACUUAGGAUUUUAGGCUCCGCCGUCUCCCCUGCGGGAGGCGGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGCGGUCAAAAUCUAUCCGCCGGAG
................((.(...(........................)).)(...........(...).............).).........(...)...
>BAAY01002983.1/1264-1163
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGUGGUCAAAAUCAAACCGCUGGAG
................((.(...(........................)).).(...........(...)............).).........(...)...
>FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
................((.(...(........................)).).(...........(...)............).).........(...)...
>BABD01012433.1/319-419
GAGAAACUUAGGAUUUUAGGCUCCGCUGCCGGCUGCUGGUCGGCAGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGCGUGGUCAAAAUCUAUCCGCCGGAG
................((.(...(.......................)).)(...........(...).............).).........(...)...
>BAAY01013224.1/926-826
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
................((.(...(........................)).)(...........(...)............).).........(...)...
>BABG01013292.1/257-357
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCCGGGCCAAACCCACAGGGGCUGGCGGUCCUGUGCGGUCAAAAUCUUUCCGCUGGAG
................((.(...(........................)).).(...........(...)...........).).........(...)...
>ADJT01005830.1/328-228
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCUGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
................((.(...(........................)).)(...........(...)............).).........(...)...
>BABA01010993.1/1076-1176
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAUCCCGCUGGAG
................((.(...(........................)).).(...........(...)...........).).........(...)...
>BAAZ01007046.1/1247-1147
GCAACUUAGGAUUUUAGGCUCCCCGUGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGUGCGGUCAAAAUCAAACCGCUGGAG
..............((.(...(.........................)).).(...........(...)............).).........(...)...
>BABA01026116.1/736-636
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCUGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAAACCGCUGGAG
................((.(...(........................)).).(...........(...)...........).).........(...)...
5 U(GGC)G
C(GCY)G
(CUC())
(()(U)C)A
Y(RR)C
 9 60.0
>BAAY01002983.1/1264-1163
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGUGGUCAAAAUCAAACCGCUGGAG
...(..).........((.(...(........................)).).(...........(...)............).).........(...)...
>FP929046.1/562024-562125
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCCACUCGAGCGGCGCUGGGCAAAACCCACAGGAGCUGGCGGUUCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...(..).........((.(...(........................)).).(...........(...)............).).........(...)...
>ADJT01005830.1/328-228
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCUGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
...(..).........((.(...(........................)).)(...........(...)............).).........(...)...
>BABA01010993.1/1076-1176
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAUCCCGCUGGAG
...(..).........((.(...(........................)).).(...........(...)...........).).........(...)...
>BAAY01013224.1/926-826
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
...(..).........((.(...(........................)).)(...........(...)............).).........(...)...
>BABG01013292.1/257-357
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCCGGGCCAAACCCACAGGGGCUGGCGGUCCUGUGCGGUCAAAAUCUUUCCGCUGGAG
...(..).........((.(...(........................)).).(...........(...)...........).).........(...)...
>FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...(..).........((.(...(........................)).).(...........(...)............).).........(...)...
>BABA01026116.1/736-636
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCUGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...(..).........((.(...(........................)).).(...........(...)...........).).........(...)...
>ADJS01009939.1/10976-11077
GAGCAACUUAGGAUUUUAGGCUCCGCCGUCUCCCCUGCGGGAGGCGGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGCGGUCAAAAUCUAUCCGCCGGAG
...(..).........((.(...(........................)).)(...........(...).............).).........(...)...
6 U(GGC)G
C(GCY)G
(CUC())
(()(U)C)A
Y(RR)C
((G)Y)G
 9 60.0
>BAAY01002983.1/1264-1163
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGUGGUCAAAAUCAAACCGCUGGAG
...(..).........((.(...(........................)).).(.((........(...)........).).).).........(...)...
>FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...(..).........((.(...(........................)).).(.((........(...)........).).).).........(...)...
>BAAY01013224.1/926-826
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
...(..).........((.(...(........................)).)(.(.(.......(...)........).).).).........(...)...
>FP929046.1/562024-562125
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCCACUCGAGCGGCGCUGGGCAAAACCCACAGGAGCUGGCGGUUCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...(..).........((.(...(........................)).).(.((........(...)........).).).).........(...)...
>BABA01010993.1/1076-1176
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAUCCCGCUGGAG
...(..).........((.(...(........................)).).(.((........(...).......).).).).........(...)...
>BABA01026116.1/736-636
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCUGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...(..).........((.(...(........................)).).(.((........(...).......).).).).........(...)...
>ADJS01009939.1/10976-11077
GAGCAACUUAGGAUUUUAGGCUCCGCCGUCUCCCCUGCGGGAGGCGGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGCGGUCAAAAUCUAUCCGCCGGAG
...(..).........((.(...(........................)).)(.((........(...).........).).).).........(...)...
>ADJT01005830.1/328-228
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCUGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
...(..).........((.(...(........................)).)(.(.(.......(...)........).).).).........(...)...
>BABG01013292.1/257-357
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCCGGGCCAAACCCACAGGGGCUGGCGGUCCUGUGCGGUCAAAAUCUUUCCGCUGGAG
...(..).........((.(...(........................)).).(.((........(...).......).).).).........(...)...
7 U(GGC)G
C(GCY)G
(CUC())
(()(U)C)A
Y(RR)C
((G)Y)G
G(G(A))
 8 53.3
>BABA01026116.1/736-636
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCUGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))....(...)...
>BABA01010993.1/1076-1176
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAUCCCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))....(...)...
>BABG01013292.1/257-357
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCCGGGCCAAACCCACAGGGGCUGGCGGUCCUGUGCGGUCAAAAUCUUUCCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))....(...)...
>BAAY01002983.1/1264-1163
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGUGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))....(...)...
>BAAY01013224.1/926-826
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
...(..)...(.(...((.(...(........................)).)(.(.(.......(...)........).).).)...))....(...)...
>FP929046.1/562024-562125
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCCACUCGAGCGGCGCUGGGCAAAACCCACAGGAGCUGGCGGUUCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))....(...)...
>FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))....(...)...
>ADJS01009939.1/10976-11077
GAGCAACUUAGGAUUUUAGGCUCCGCCGUCUCCCCUGCGGGAGGCGGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGCGGUCAAAAUCUAUCCGCCGGAG
...(..)...(.(...((.(...(........................)).)(.((........(...).........).).).)...))....(...)...
8 U(GGC)G
C(GCY)G
(CUC())
(()(U)C)A
Y(RR)C
((G)Y)G
G(G(A))
((G)GA)G
 7 46.7
>FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))...((...)..)
>FP929046.1/562024-562125
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCCACUCGAGCGGCGCUGGGCAAAACCCACAGGAGCUGGCGGUUCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))...((...)..)
>BABG01013292.1/257-357
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCCGGGCCAAACCCACAGGGGCUGGCGGUCCUGUGCGGUCAAAAUCUUUCCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))...((...)..)
>BAAY01002983.1/1264-1163
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGUGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))...((...)..)
>ADJS01009939.1/10976-11077
GAGCAACUUAGGAUUUUAGGCUCCGCCGUCUCCCCUGCGGGAGGCGGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGCGGUCAAAAUCUAUCCGCCGGAG
...(..)...(.(...((.(...(........................)).)(.((........(...).........).).).)...))...((...)..)
>BABA01026116.1/736-636
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCUGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))...((...)..)
>BABA01010993.1/1076-1176
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAUCCCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))...((...)..)
9 U(GGC)G
C(GCY)G
(CUC())
(()(U)C)A
Y(RR)C
((G)Y)G
G(G(A))
((G)GA)G
G(G(C))
 5 33.3
>FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((.....(.((...)).).....).).).)...))...((...)..)
>BABA01026116.1/736-636
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCUGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((.....(.((...))).....).).).)...))...((...)..)
>BABG01013292.1/257-357
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCCGGGCCAAACCCACAGGGGCUGGCGGUCCUGUGCGGUCAAAAUCUUUCCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((.....(.((...))).....).).).)...))...((...)..)
>BAAY01002983.1/1264-1163
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGUGGUCAAAAUCAAACCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((.....(.((...)).).....).).).)...))...((...)..)
>BABA01010993.1/1076-1176
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAUCCCGCUGGAG
...(..)...(.(...((.(...(........................)).).(.((.....(.((...))).....).).).)...))...((...)..)

>BABA01026116.1/736-636
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCUGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)...............................
.................................................................(...).......................(...)...
...................(...(........................))...............(...).......................(...)...
................((.(...(........................)).).(...........(...)...........).).........(...)...
...(..).........((.(...(........................)).).(...........(...)...........).).........(...)...
...(..).........((.(...(........................)).).(.((........(...).......).).).).........(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))....(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))...((...)..)
...(..)...(.(...((.(...(........................)).).(.((.....(.((...))).....).).).)...))...((...)..)
>FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)................................
.................................................................(...)........................(...)...
...................(...(........................))...............(...)........................(...)...
................((.(...(........................)).).(...........(...)............).).........(...)...
...(..).........((.(...(........................)).).(...........(...)............).).........(...)...
...(..).........((.(...(........................)).).(.((........(...)........).).).).........(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))....(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))...((...)..)
...(..)...(.(...((.(...(........................)).).(.((.....(.((...)).).....).).).)...))...((...)..)
>BABG01013292.1/257-357
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCGUCUCGAACCGCGCCGGGCCAAACCCACAGGGGCUGGCGGUCCUGUGCGGUCAAAAUCUUUCCGCUGGAG
.................................................................(...)...............................
.................................................................(...).......................(...)...
...................(...(........................))...............(...).......................(...)...
................((.(...(........................)).).(...........(...)...........).).........(...)...
...(..).........((.(...(........................)).).(...........(...)...........).).........(...)...
...(..).........((.(...(........................)).).(.((........(...).......).).).).........(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))....(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))...((...)..)
...(..)...(.(...((.(...(........................)).).(.((.....(.((...))).....).).).)...))...((...)..)
>BAAY01002983.1/1264-1163
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGUGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)................................
.................................................................(...)........................(...)...
...................(...(........................))...............(...)........................(...)...
................((.(...(........................)).).(...........(...)............).).........(...)...
...(..).........((.(...(........................)).).(...........(...)............).).........(...)...
...(..).........((.(...(........................)).).(.((........(...)........).).).).........(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))....(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))...((...)..)
...(..)...(.(...((.(...(........................)).).(.((.....(.((...)).).....).).).)...))...((...)..)
>BABA01010993.1/1076-1176
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACAGGGGCUGGCGGCCCUGUGCGGUCAAAAUCAUCCCGCUGGAG
.................................................................(...)...............................
.................................................................(...).......................(...)...
...................(...(........................))...............(...).......................(...)...
................((.(...(........................)).).(...........(...)...........).).........(...)...
...(..).........((.(...(........................)).).(...........(...)...........).).........(...)...
...(..).........((.(...(........................)).).(.((........(...).......).).).).........(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))....(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...).......).).).)...))...((...)..)
...(..)...(.(...((.(...(........................)).).(.((.....(.((...))).....).).).)...))...((...)..)
>FP929046.1/562024-562125
GAGCAACUUAGGAUUUUAGGCUCCCCGGUGCCACUCGAGCGGCGCUGGGCAAAACCCACAGGAGCUGGCGGUUCCUGUGCGGUCAAAAUCAAACCGCUGGAG
.................................................................(...)................................
.................................................................(...)........................(...)...
...................(...(........................))...............(...)........................(...)...
................((.(...(........................)).).(...........(...)............).).........(...)...
...(..).........((.(...(........................)).).(...........(...)............).).........(...)...
...(..).........((.(...(........................)).).(.((........(...)........).).).).........(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))....(...)...
...(..)...(.(...((.(...(........................)).).(.((........(...)........).).).)...))...((...)..)
>ADJS01009939.1/10976-11077
GAGCAACUUAGGAUUUUAGGCUCCGCCGUCUCCCCUGCGGGAGGCGGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGCGGUCAAAAUCUAUCCGCCGGAG
................................................................(...).................................
................................................................(...).........................(...)...
...................(...(........................))..............(...).........................(...)...
................((.(...(........................)).)(...........(...).............).).........(...)...
...(..).........((.(...(........................)).)(...........(...).............).).........(...)...
...(..).........((.(...(........................)).)(.((........(...).........).).).).........(...)...
...(..)...(.(...((.(...(........................)).)(.((........(...).........).).).)...))....(...)...
...(..)...(.(...((.(...(........................)).)(.((........(...).........).).).)...))...((...)..)
>BAAY01013224.1/926-826
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
................................................................(...)................................
................................................................(...)........................(...)...
...................(...(........................))..............(...)........................(...)...
................((.(...(........................)).)(...........(...)............).).........(...)...
...(..).........((.(...(........................)).)(...........(...)............).).........(...)...
...(..).........((.(...(........................)).)(.(.(.......(...)........).).).).........(...)...
...(..)...(.(...((.(...(........................)).)(.(.(.......(...)........).).).)...))....(...)...
>ADJT01005830.1/328-228
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCUGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAG
................................................................(...)................................
................................................................(...)........................(...)...
...................(...(........................))..............(...)........................(...)...
................((.(...(........................)).)(...........(...)............).).........(...)...
...(..).........((.(...(........................)).)(...........(...)............).).........(...)...
...(..).........((.(...(........................)).)(.(.(.......(...)........).).).).........(...)...
>BAAZ01007046.1/1247-1147
GCAACUUAGGAUUUUAGGCUCCCCGUGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGUGCGGUCAAAAUCAAACCGCUGGAG
................................................................(...)................................
................................................................(...)........................(...)...
.................(...(.........................))...............(...)........................(...)...
..............((.(...(.........................)).).(...........(...)............).).........(...)...
>BABD01012433.1/319-419
GAGAAACUUAGGAUUUUAGGCUCCGCUGCCGGCUGCUGGUCGGCAGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGCGUGGUCAAAAUCUAUCCGCCGGAG
...............................................................(...).................................
...............................................................(...).........................(...)...
...................(...(.......................))..............(...).........................(...)...
................((.(...(.......................)).)(...........(...).............).).........(...)...
>BAAU01020333.1/1-83
GGCUCCGCUGUCGGCUGCUGGUCGGCAGCGCAAACCCCGCAAGGCUGGCGGUCUUGCGUGUGGUCAAAAUCUAUCCGCCGGAG
.............................................(...).................................
.............................................(...).........................(...)...
.(...(.......................))..............(...).........................(...)...
>ACBY02000013.1/114529-114434
GAGCAACUUAGGAUUUUAGGCUCCGCCGCAGCUUCCGCGGCGCAAACCGGUGUCAGGCUGGCGGUCUGGCAUGCGGUCAAAAUCUAUCCGCCGGAG
..........................................................(...).................................
..........................................................(...).........................(...)...
...................(...(.................))...............(...).........................(...)...
>ADJS01012726.1/612-517
GAGCAACUUAGGAUUUUAGGCUCCACCGCGGCUUGCUGCGGUGCAAACCCCGCAAGCCUGGCGGUCUUGCGCGCGGUCAAAAUCUAUCCGCCGGAG
..........................................................(...).................................
..........................................................(...).........................(...)...
...................(...(..................))..............(...).........................(...)...
>ADJT01007369.1/6381-6474
GAGCAACUUAGGAUUUUAGGCUCCGCCUGGUUUUCAGGCGCAAACCCACCCAAGCCUGGCGGUCUUGGGCGCGGUCAAAAUCUAUCCGCCGGAG
........................................................(...).................................
........................................................(...).........................(...)...

ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio
1 U(GGC)G < 0.001 3.46e+03
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
2 C(GCY)G < 0.001 174
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
3 (CUC()) < 0.001 151
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
4 (()(U)C)A < 0.001 76.6
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
5 Y(RR)C < 0.001 7.81
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
6 ((G)Y)G < 0.001 7.7
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
7 G(G(A)) < 0.001 1.23
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
8 G(G(C)) < 0.001 1.47
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
9 ((G)GA)G < 0.001 14.6
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
ORB p-value ORB frequency
(per structure per nucleotide) 		Means
ratio

NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio
1 U(GGC)G < 0.001 3.46e+03
FP929045.1/1765647-1765748
GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCACGGGGGCUGGCGGUCCCCGCGCGGUCAAAAUCAAACCGCUGGAG
...................................................................................................1..
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0..
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
NCM p-value NCM frequency
(per structure per nucleotide) 		Means
ratio

Structure is visualized using R2R 1.0.6 (Zasha Weinberg).
LOGOS are generated with ggseqlogo (Omar Wagih).